AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015374

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015374.t1 MTR_5g013440 96.429 252 9 0 1 252 1 252 0.0 508
MS.gene015374.t1 MTR_4g099370 75.299 251 62 0 2 252 1 251 1.32e-149 417
MS.gene015374.t1 MTR_4g099400 60.355 169 67 0 82 250 10 178 5.21e-77 231
MS.gene015374.t1 MTR_4g098930 41.036 251 140 2 10 252 3 253 1.38e-64 202
MS.gene015374.t1 MTR_4g075790 41.176 221 126 3 32 251 26 243 1.90e-58 186
MS.gene015374.t1 MTR_4g075790 39.412 170 102 1 82 251 9 177 1.95e-43 145
MS.gene015374.t1 MTR_0809s0010 32.819 259 153 7 10 251 16 270 4.23e-34 124
MS.gene015374.t1 MTR_4g028640 31.739 230 147 7 27 251 40 264 2.00e-30 114
MS.gene015374.t1 MTR_0118s0070 34.802 227 135 8 34 251 53 275 3.57e-30 114
MS.gene015374.t1 MTR_2g090265 31.278 227 141 7 34 252 38 257 4.55e-30 113
MS.gene015374.t1 MTR_2g090270 30.531 226 142 7 34 251 40 258 5.83e-29 110
MS.gene015374.t1 MTR_0122s0020 30.973 226 141 7 34 251 46 264 1.56e-27 106
MS.gene015374.t1 MTR_4g102450 26.538 260 164 9 12 252 11 262 2.71e-23 95.5
MS.gene015374.t1 MTR_1g085460 29.185 233 144 9 32 251 33 257 2.76e-23 95.5
MS.gene015374.t1 MTR_3g435430 28.926 242 156 9 18 251 14 247 8.98e-23 93.6
MS.gene015374.t1 MTR_7g111010 27.132 258 162 11 12 251 5 254 9.15e-23 94.0
MS.gene015374.t1 MTR_7g013140 28.163 245 161 10 15 251 14 251 1.31e-21 90.9
MS.gene015374.t1 MTR_3g094060 26.562 256 173 8 1 248 3 251 1.46e-21 90.5
MS.gene015374.t1 MTR_3g094040 28.829 222 143 8 32 245 34 248 1.52e-21 90.5
MS.gene015374.t1 MTR_5g011210 26.695 236 146 6 32 252 40 263 1.89e-21 90.5
MS.gene015374.t1 MTR_7g110990 27.468 233 148 9 32 251 15 239 2.74e-21 89.7
MS.gene015374.t1 MTR_7g013120 27.642 246 163 8 15 251 14 253 9.83e-21 88.6
MS.gene015374.t1 MTR_8g058990 28.175 252 165 10 9 251 9 253 1.16e-20 88.2
MS.gene015374.t1 MTR_7g011060 29.565 230 148 10 26 252 23 241 2.33e-20 87.0
MS.gene015374.t1 MTR_5g075320 28.829 222 143 8 33 246 33 247 9.26e-20 85.9
MS.gene015374.t1 MTR_7g013150 28.185 259 169 10 2 251 3 253 9.38e-20 85.9
MS.gene015374.t1 MTR_3g466760 25.703 249 161 9 15 246 15 256 1.59e-19 85.1
MS.gene015374.t1 MTR_3g466790 25.397 252 164 9 12 246 6 250 2.05e-19 84.7
MS.gene015374.t1 MTR_5g041700 27.572 243 158 9 15 246 8 243 1.28e-18 82.4
MS.gene015374.t1 MTR_0122s0020 32.704 159 96 5 34 185 46 200 1.30e-18 81.6
MS.gene015374.t1 MTR_4g081950 27.273 242 161 8 12 245 44 278 1.31e-18 83.2
MS.gene015374.t1 MTR_8g464350 26.695 236 142 10 32 251 34 254 3.32e-18 81.6
MS.gene015374.t1 MTR_7g061720 25.214 234 158 8 25 248 28 254 4.52e-17 78.6
MS.gene015374.t1 MTR_4g099380 41.667 108 48 3 113 219 1 94 1.40e-16 77.4
MS.gene015374.t1 MTR_1g026020 23.810 231 158 9 32 251 32 255 3.38e-16 76.3
MS.gene015374.t1 MTR_5g079950 24.335 263 176 11 1 248 1 255 4.82e-16 75.9
MS.gene015374.t1 MTR_0040s0140 28.112 249 160 10 12 248 13 254 5.88e-16 75.5
MS.gene015374.t1 MTR_2g097030 25.439 228 151 9 32 248 37 256 3.17e-15 73.6
MS.gene015374.t1 MTR_2g090255 27.600 250 161 10 12 248 8 250 4.24e-14 70.1
MS.gene015374.t1 MTR_5g076950 27.660 235 143 11 32 252 44 265 6.72e-14 69.7
MS.gene015374.t1 MTR_6g012520 26.613 248 164 10 9 248 3 240 7.26e-13 66.6
MS.gene015374.t1 MTR_4g063975 26.667 180 117 6 32 201 35 209 1.01e-12 66.2
MS.gene015374.t1 MTR_3g064510 26.122 245 151 11 24 248 48 282 1.70e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015374.t1 AT4G17030 63.180 239 85 3 12 249 11 247 1.02e-113 327
MS.gene015374.t1 AT3G45970 39.614 207 122 3 48 251 15 221 9.59e-51 166
MS.gene015374.t1 AT4G38400 40.099 202 119 2 52 251 47 248 1.07e-48 162
MS.gene015374.t1 AT3G45970 38.916 203 121 3 52 251 46 248 7.09e-48 159
MS.gene015374.t1 AT3G45960 38.298 188 115 1 65 251 12 199 2.56e-47 156
MS.gene015374.t1 AT3G45960 37.129 202 125 2 52 251 46 247 3.84e-47 157
MS.gene015374.t1 AT1G65680 32.917 240 141 8 24 251 42 273 1.37e-34 125
MS.gene015374.t1 AT4G28250 30.534 262 163 9 6 252 4 261 4.27e-30 113
MS.gene015374.t1 AT2G20750 29.771 262 158 9 13 252 11 268 6.08e-28 108
MS.gene015374.t1 AT4G28250 29.389 262 160 10 6 252 4 255 4.25e-25 100
MS.gene015374.t1 AT2G40610 29.921 254 163 9 1 245 1 248 9.43e-25 99.4
MS.gene015374.t1 AT5G05290 29.730 222 142 7 33 246 36 251 2.87e-24 97.8
MS.gene015374.t1 AT5G39290 30.769 234 133 11 32 251 61 279 3.15e-23 95.9
MS.gene015374.t1 AT3G60570 29.200 250 152 10 15 251 20 257 9.46e-23 94.0
MS.gene015374.t1 AT5G39270 30.769 234 133 11 32 251 61 279 4.72e-22 92.4
MS.gene015374.t1 AT5G39310 30.531 226 143 9 33 251 94 312 6.48e-22 92.8
MS.gene015374.t1 AT4G01630 24.046 262 180 8 2 251 1 255 1.17e-21 90.9
MS.gene015374.t1 AT2G45110 31.579 228 138 8 35 251 39 259 2.05e-21 90.5
MS.gene015374.t1 AT5G56320 27.419 248 161 9 13 248 9 249 1.44e-20 88.2
MS.gene015374.t1 AT5G56320 27.419 248 161 9 13 248 9 249 1.44e-20 88.2
MS.gene015374.t1 AT3G60570 30.876 217 125 10 48 251 5 209 3.88e-20 85.9
MS.gene015374.t1 AT5G56320 27.419 248 161 9 13 248 9 249 4.79e-20 87.4
MS.gene015374.t1 AT5G39280 30.088 226 145 9 32 251 57 275 4.94e-20 87.0
MS.gene015374.t1 AT5G39300 30.088 226 145 9 32 251 58 276 8.26e-20 86.3
MS.gene015374.t1 AT2G03090 26.721 247 166 8 10 248 11 250 9.73e-20 85.9
MS.gene015374.t1 AT1G65681 27.962 211 140 6 48 251 17 222 1.74e-19 84.3
MS.gene015374.t1 AT2G20750 31.122 196 112 7 13 187 11 204 1.79e-18 81.6
MS.gene015374.t1 AT3G15370 27.734 256 150 11 12 248 8 247 5.16e-18 81.3
MS.gene015374.t1 AT5G02260 27.391 230 150 9 29 248 32 254 9.88e-18 80.5
MS.gene015374.t1 AT1G12560 24.123 228 159 6 32 251 40 261 4.35e-17 78.6
MS.gene015374.t1 AT2G39700 25.446 224 150 8 32 245 34 250 8.72e-17 77.8
MS.gene015374.t1 AT4G28250 30.457 197 115 7 6 188 4 192 1.90e-16 75.9
MS.gene015374.t1 AT4G28250 30.612 196 114 7 6 187 4 191 3.50e-16 75.1
MS.gene015374.t1 AT1G62980 23.228 254 175 7 13 252 10 257 7.26e-16 75.1
MS.gene015374.t1 AT3G29030 28.311 219 147 8 29 245 38 248 1.21e-15 74.7
MS.gene015374.t1 AT2G37640 26.432 227 150 8 32 248 39 258 1.31e-15 74.7
MS.gene015374.t1 AT5G39260 28.251 223 149 9 32 251 48 262 6.89e-15 72.8
MS.gene015374.t1 AT1G20190 25.431 232 151 10 33 251 30 252 4.10e-14 70.5
MS.gene015374.t1 AT2G37640 26.066 211 139 8 48 248 30 233 1.37e-12 65.9
MS.gene015374.t1 AT4G38210 27.600 250 160 12 13 248 10 252 1.47e-12 65.9
MS.gene015374.t1 AT3G03220 26.957 230 151 9 32 252 43 264 1.65e-12 65.9
MS.gene015374.t1 AT3G15370 25.926 216 131 9 48 248 76 277 1.75e-12 66.2

Find 67 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTGGTGCTTAAAATT+AGG 0.152890 5.4:+7292225 None:intergenic
TCCCCGTGGCTATTCAAATT+TGG 0.158342 5.4:-7291322 MS.gene015374:CDS
TGGCTATAATATCTTGTTTA+AGG 0.174105 5.4:-7291217 MS.gene015374:CDS
TGCTCTAGAGCAACCTATTA+TGG 0.246885 5.4:-7292144 MS.gene015374:CDS
CTTGGATTTGCATAACAATC+TGG 0.272291 5.4:+7292117 None:intergenic
ACAATCTGGGCTACCATAAT+AGG 0.288543 5.4:+7292131 None:intergenic
GCTTGTGGCTATGGTGATTA+TGG 0.309081 5.4:-7291710 MS.gene015374:CDS
TACGCATTGGCCTCCATTCT+TGG 0.310288 5.4:+7291007 None:intergenic
TGACACAAACAAAACCAATT+TGG 0.321541 5.4:+7292211 None:intergenic
GTGGTAGTGCTGGGCTGTAT+TGG 0.321854 5.4:-7290915 MS.gene015374:CDS
CCATTCTCGTCACACAATTC+TGG 0.326522 5.4:+7291402 None:intergenic
TGGTAGTGCTGGGCTGTATT+GGG 0.329472 5.4:-7290914 MS.gene015374:CDS
CCCCGTGGCTATTCAAATTT+GGG 0.333249 5.4:-7291321 MS.gene015374:CDS
ATTCCTAGTGATTGGGAAGC+TGG 0.347548 5.4:-7290874 MS.gene015374:CDS
AGAATGTTATTCCTAGTGAT+TGG 0.349568 5.4:-7290882 MS.gene015374:CDS
AGGCCAATGCGTAGGGCATT+TGG 0.356145 5.4:-7290997 MS.gene015374:CDS
ATCACTAGGAATAACATTCT+TGG 0.372273 5.4:+7290885 None:intergenic
CCGATTTCGGTGTGGGAGAT+AGG 0.376563 5.4:-7291362 MS.gene015374:CDS
CCTATCTCCCACACCGAAAT+CGG 0.384864 5.4:+7291362 None:intergenic
GCCATTCTTATTCTCTATGT+TGG 0.402224 5.4:-7291162 MS.gene015374:CDS
CTCCAAGTGAGTGGTAGTGC+TGG 0.409157 5.4:-7290925 MS.gene015374:CDS
TTCCTAGTGATTGGGAAGCT+GGG 0.431541 5.4:-7290873 MS.gene015374:CDS
TTAGAGGGAGCTTGTGGCTA+TGG 0.433052 5.4:-7291719 MS.gene015374:intron
AACTTGATCTCACCTCTTGG+AGG 0.448456 5.4:+7290952 None:intergenic
GAATGTTATTCCTAGTGATT+GGG 0.462804 5.4:-7290881 MS.gene015374:CDS
AACAGGAAGATTGCCAAGAA+TGG 0.466268 5.4:-7291020 MS.gene015374:intron
ATTCTTATTCTCTATGTTGG+TGG 0.472042 5.4:-7291159 MS.gene015374:CDS
TATGTGGTGGTGACCGATTT+CGG 0.479504 5.4:-7291375 MS.gene015374:CDS
TCGCAGGCGTTTCTTCGCTA+TGG 0.490569 5.4:-7291664 MS.gene015374:CDS
TCGCTATGGAAGAATGGATC+TGG 0.490619 5.4:-7291650 MS.gene015374:CDS
CTCAACTTGATCTCACCTCT+TGG 0.495730 5.4:+7290949 None:intergenic
TTGGATTTGCATAACAATCT+GGG 0.496289 5.4:+7292118 None:intergenic
CCAGAATTGTGTGACGAGAA+TGG 0.501363 5.4:-7291402 MS.gene015374:CDS
TCCTAGTGATTGGGAAGCTG+GGG 0.513323 5.4:-7290872 MS.gene015374:CDS
TTATAGCCATTGTATTTGCA+AGG 0.532628 5.4:+7291231 None:intergenic
GCCCAGCACTACCACTCACT+TGG 0.534848 5.4:+7290923 None:intergenic
ACTTGATCTCACCTCTTGGA+GGG 0.535508 5.4:+7290953 None:intergenic
ACCAACATAGAGAATAAGAA+TGG 0.537864 5.4:+7291161 None:intergenic
GCCCAAATTTGAATAGCCAC+GGG 0.544992 5.4:+7291320 None:intergenic
TGCCCAAATTTGAATAGCCA+CGG 0.546821 5.4:+7291319 None:intergenic
GTTCCAAATGCCCTACGCAT+TGG 0.550110 5.4:+7290994 None:intergenic
GTAAATGATGGCAATGTCGC+AGG 0.552094 5.4:-7291680 MS.gene015374:CDS
TCCAAGTGAGTGGTAGTGCT+GGG 0.552324 5.4:-7290924 MS.gene015374:CDS
GTTTCTTCGCTATGGAAGAA+TGG 0.552967 5.4:-7291656 MS.gene015374:CDS
AAGAATGGAGGCCAATGCGT+AGG 0.554025 5.4:-7291005 MS.gene015374:CDS
TGGAAGAATGGATCTGGTTG+TGG 0.555017 5.4:-7291644 MS.gene015374:CDS
TCTTGAGAGGAACACAAGAC+AGG 0.557963 5.4:+7292177 None:intergenic
TATAGCCATTGTATTTGCAA+GGG 0.561411 5.4:+7291232 None:intergenic
GTGGTGACCGATTTCGGTGT+GGG 0.566642 5.4:-7291369 MS.gene015374:CDS
AACTGCTGTTCAGTTGTGGC+AGG 0.569473 5.4:-7291124 MS.gene015374:intron
ATAAGAATGGCTAAGTAGTG+AGG 0.575706 5.4:+7291174 None:intergenic
AGAATGGAGGCCAATGCGTA+GGG 0.588746 5.4:-7291004 MS.gene015374:CDS
TATGGACAGACAGTAAATGA+TGG 0.603311 5.4:-7291692 MS.gene015374:CDS
TAGTGCTGGGCTGTATTGGG+TGG 0.610771 5.4:-7290911 MS.gene015374:CDS
AGGAAGATTGCCAAGAATGG+AGG 0.614849 5.4:-7291017 MS.gene015374:CDS
TGACGAGAATGGAGCATATG+TGG 0.619740 5.4:-7291391 MS.gene015374:CDS
AGAATCCCTTGCAAATACAA+TGG 0.620915 5.4:-7291237 MS.gene015374:CDS
GCAAACAAAAGAGTCTTGAG+AGG 0.624968 5.4:+7292164 None:intergenic
GCCCCAGCTTCCCAATCACT+AGG 0.636884 5.4:+7290871 None:intergenic
ATGTAACTGCTGTTCAGTTG+TGG 0.651186 5.4:-7291128 MS.gene015374:CDS
GGTGGTGACCGATTTCGGTG+TGG 0.653687 5.4:-7291370 MS.gene015374:CDS
AAGTTGAGGCTCCAAGTGAG+TGG 0.655665 5.4:-7290934 MS.gene015374:CDS
GACTTCATCATGAGTCCCCG+TGG 0.688519 5.4:-7291336 MS.gene015374:CDS
GATGCAGAGAACCCTCCAAG+AGG 0.690257 5.4:-7290964 MS.gene015374:CDS
CCCAAATTTGAATAGCCACG+GGG 0.693150 5.4:+7291321 None:intergenic
CAAGAGGTGAGATCAAGTTG+AGG 0.697595 5.4:-7290948 MS.gene015374:CDS
CGAGAATGGAGCATATGTGG+TGG 0.757236 5.4:-7291388 MS.gene015374:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATAATGATGAAAT+AGG - chr5.4:7291635-7291654 MS.gene015374:CDS 10.0%
!! TGAAGTAATATATATTATAA+AGG - chr5.4:7291568-7291587 MS.gene015374:intron 10.0%
!! TATTAACAATCTCAAAATAA+AGG + chr5.4:7291980-7291999 None:intergenic 15.0%
!!! ATTCAATTTTTATCTCAAAT+TGG - chr5.4:7291133-7291152 MS.gene015374:CDS 15.0%
!! ACACATTTATAAAAATTGAC+AGG + chr5.4:7291173-7291192 None:intergenic 20.0%
!! ACATTTCTTGAAATTGAATT+GGG - chr5.4:7292011-7292030 MS.gene015374:intron 20.0%
!! CACATTTATAAAAATTGACA+GGG + chr5.4:7291172-7291191 None:intergenic 20.0%
!! TACATTTCTTGAAATTGAAT+TGG - chr5.4:7292010-7292029 MS.gene015374:intron 20.0%
! AAATAATGATGAAATAGGTG+AGG - chr5.4:7291640-7291659 MS.gene015374:CDS 25.0%
! CATAAAATACATAATCTGAG+TGG - chr5.4:7291319-7291338 MS.gene015374:CDS 25.0%
! TATTCAAATTTGGGCAAAAA+TGG - chr5.4:7291762-7291781 MS.gene015374:intron 25.0%
!! AACTAATTGTTAGTTGATGT+TGG + chr5.4:7291604-7291623 None:intergenic 25.0%
!! CATTGAATCGGTTTATAAAT+CGG + chr5.4:7291240-7291259 None:intergenic 25.0%
!! TGGCTATAATATCTTGTTTA+AGG - chr5.4:7291857-7291876 MS.gene015374:intron 25.0%
!!! CAGTATACAACATTTTTTTC+CGG - chr5.4:7291263-7291282 MS.gene015374:CDS 25.0%
ACCAACATAGAGAATAAGAA+TGG + chr5.4:7291916-7291935 None:intergenic 30.0%
AGAATGTTATTCCTAGTGAT+TGG - chr5.4:7292192-7292211 MS.gene015374:CDS 30.0%
ATCACTAGGAATAACATTCT+TGG + chr5.4:7292192-7292211 None:intergenic 30.0%
ATTAGTAGAAGACACTTACT+TGG + chr5.4:7290978-7290997 None:intergenic 30.0%
ATTCTTATTCTCTATGTTGG+TGG - chr5.4:7291915-7291934 MS.gene015374:intron 30.0%
GAATGTTATTCCTAGTGATT+GGG - chr5.4:7292193-7292212 MS.gene015374:CDS 30.0%
TATAGCCATTGTATTTGCAA+GGG + chr5.4:7291845-7291864 None:intergenic 30.0%
TGAATTGGGTTTACTTGAAA+TGG - chr5.4:7292025-7292044 MS.gene015374:intron 30.0%
TGACACAAACAAAACCAATT+TGG + chr5.4:7290866-7290885 None:intergenic 30.0%
TGTATACTGTCTCATTGAAT+CGG + chr5.4:7291252-7291271 None:intergenic 30.0%
TTATAGCCATTGTATTTGCA+AGG + chr5.4:7291846-7291865 None:intergenic 30.0%
TTGGATTTGCATAACAATCT+GGG + chr5.4:7290959-7290978 None:intergenic 30.0%
! ACTTTTTAAATATGGTGTGG+TGG - chr5.4:7291800-7291819 MS.gene015374:intron 30.0%
! CCTAATTTTAAGCACCAAAT+TGG - chr5.4:7290849-7290868 MS.gene015374:CDS 30.0%
! GGAACTTTTTAAATATGGTG+TGG - chr5.4:7291797-7291816 MS.gene015374:intron 30.0%
! TCTGCGGAACTTTTTAAATA+TGG - chr5.4:7291792-7291811 MS.gene015374:intron 30.0%
!! CCAATTTGGTGCTTAAAATT+AGG + chr5.4:7290852-7290871 None:intergenic 30.0%
AAAAATTGACAGGGTTGAGT+AGG + chr5.4:7291163-7291182 None:intergenic 35.0%
ACCTAGACATTGCATTACTT+TGG - chr5.4:7291289-7291308 MS.gene015374:CDS 35.0%
AGAATCCCTTGCAAATACAA+TGG - chr5.4:7291837-7291856 MS.gene015374:intron 35.0%
ATAAGAATGGCTAAGTAGTG+AGG + chr5.4:7291903-7291922 None:intergenic 35.0%
CTTGGATTTGCATAACAATC+TGG + chr5.4:7290960-7290979 None:intergenic 35.0%
GCCATTCTTATTCTCTATGT+TGG - chr5.4:7291912-7291931 MS.gene015374:intron 35.0%
GGGTTTACTTGAAATGGTAA+TGG - chr5.4:7292031-7292050 MS.gene015374:intron 35.0%
TATGGACAGACAGTAAATGA+TGG - chr5.4:7291382-7291401 MS.gene015374:CDS 35.0%
!! ACTTGAAATGGTAATGGAAC+AGG - chr5.4:7292037-7292056 MS.gene015374:intron 35.0%
!! GGCTATTAACCTGTTTTAGA+GGG - chr5.4:7291340-7291359 MS.gene015374:CDS 35.0%
!! TGGCTATTAACCTGTTTTAG+AGG - chr5.4:7291339-7291358 MS.gene015374:CDS 35.0%
!!! GAGTGTTGTGCACATTTTTT+AGG - chr5.4:7291196-7291215 MS.gene015374:CDS 35.0%
AACAGGAAGATTGCCAAGAA+TGG - chr5.4:7292054-7292073 MS.gene015374:intron 40.0%
AATGCAATGTCTAGGTTCAC+CGG + chr5.4:7291285-7291304 None:intergenic 40.0%
ACAATCTGGGCTACCATAAT+AGG + chr5.4:7290946-7290965 None:intergenic 40.0%
ATGTAACTGCTGTTCAGTTG+TGG - chr5.4:7291946-7291965 MS.gene015374:intron 40.0%
GCAAACAAAAGAGTCTTGAG+AGG + chr5.4:7290913-7290932 None:intergenic 40.0%
GCCAAAGTAATGCAATGTCT+AGG + chr5.4:7291293-7291312 None:intergenic 40.0%
GTTTCTTCGCTATGGAAGAA+TGG - chr5.4:7291418-7291437 MS.gene015374:CDS 40.0%
TGCCCAAATTTGAATAGCCA+CGG + chr5.4:7291758-7291777 None:intergenic 40.0%
! CAAAAATGGTGATGCATCTG+CGG - chr5.4:7291776-7291795 MS.gene015374:intron 40.0%
!! TGCTCTAGAGCAACCTATTA+TGG - chr5.4:7290930-7290949 MS.gene015374:CDS 40.0%
AACTTGATCTCACCTCTTGG+AGG + chr5.4:7292125-7292144 None:intergenic 45.0%
ACTTGATCTCACCTCTTGGA+GGG + chr5.4:7292124-7292143 None:intergenic 45.0%
AGGAAGATTGCCAAGAATGG+AGG - chr5.4:7292057-7292076 MS.gene015374:intron 45.0%
ATTCCTAGTGATTGGGAAGC+TGG - chr5.4:7292200-7292219 MS.gene015374:CDS 45.0%
CCAGAATTGTGTGACGAGAA+TGG - chr5.4:7291672-7291691 MS.gene015374:CDS 45.0%
CCATTCTCGTCACACAATTC+TGG + chr5.4:7291675-7291694 None:intergenic 45.0%
CCCAAATTTGAATAGCCACG+GGG + chr5.4:7291756-7291775 None:intergenic 45.0%
CCCCGTGGCTATTCAAATTT+GGG - chr5.4:7291753-7291772 MS.gene015374:intron 45.0%
CTCAACTTGATCTCACCTCT+TGG + chr5.4:7292128-7292147 None:intergenic 45.0%
GCCCAAATTTGAATAGCCAC+GGG + chr5.4:7291757-7291776 None:intergenic 45.0%
GCTTGTGGCTATGGTGATTA+TGG - chr5.4:7291364-7291383 MS.gene015374:CDS 45.0%
GTAAATGATGGCAATGTCGC+AGG - chr5.4:7291394-7291413 MS.gene015374:CDS 45.0%
TCCCCGTGGCTATTCAAATT+TGG - chr5.4:7291752-7291771 MS.gene015374:intron 45.0%
TCGCTATGGAAGAATGGATC+TGG - chr5.4:7291424-7291443 MS.gene015374:intron 45.0%
TCTTGAGAGGAACACAAGAC+AGG + chr5.4:7290900-7290919 None:intergenic 45.0%
TGACGAGAATGGAGCATATG+TGG - chr5.4:7291683-7291702 MS.gene015374:CDS 45.0%
TGGAAGAATGGATCTGGTTG+TGG - chr5.4:7291430-7291449 MS.gene015374:intron 45.0%
TTCCTAGTGATTGGGAAGCT+GGG - chr5.4:7292201-7292220 MS.gene015374:CDS 45.0%
! CAAGAGGTGAGATCAAGTTG+AGG - chr5.4:7292126-7292145 MS.gene015374:CDS 45.0%
! GAGGATTTTTGCTGCGTTCA+TGG + chr5.4:7291884-7291903 None:intergenic 45.0%
! TATGTGGTGGTGACCGATTT+CGG - chr5.4:7291699-7291718 MS.gene015374:CDS 45.0%
AACTGCTGTTCAGTTGTGGC+AGG - chr5.4:7291950-7291969 MS.gene015374:intron 50.0%
AAGAATGGAGGCCAATGCGT+AGG - chr5.4:7292069-7292088 MS.gene015374:intron 50.0%
AAGTTGAGGCTCCAAGTGAG+TGG - chr5.4:7292140-7292159 MS.gene015374:CDS 50.0%
AGAATGGAGGCCAATGCGTA+GGG - chr5.4:7292070-7292089 MS.gene015374:intron 50.0%
CCTATCTCCCACACCGAAAT+CGG + chr5.4:7291715-7291734 None:intergenic 50.0%
CGAGAATGGAGCATATGTGG+TGG - chr5.4:7291686-7291705 MS.gene015374:CDS 50.0%
GTTCCAAATGCCCTACGCAT+TGG + chr5.4:7292083-7292102 None:intergenic 50.0%
TCCTAGTGATTGGGAAGCTG+GGG - chr5.4:7292202-7292221 MS.gene015374:CDS 50.0%
TTAGAGGGAGCTTGTGGCTA+TGG - chr5.4:7291355-7291374 MS.gene015374:CDS 50.0%
! TACGCATTGGCCTCCATTCT+TGG + chr5.4:7292070-7292089 None:intergenic 50.0%
! TCCAAGTGAGTGGTAGTGCT+GGG - chr5.4:7292150-7292169 MS.gene015374:CDS 50.0%
! TGGTAGTGCTGGGCTGTATT+GGG - chr5.4:7292160-7292179 MS.gene015374:CDS 50.0%
!! CCACAAGCTCCCTCTAAAAC+AGG + chr5.4:7291352-7291371 None:intergenic 50.0%
!!! CCTGTTTTAGAGGGAGCTTG+TGG - chr5.4:7291349-7291368 MS.gene015374:CDS 50.0%
GACTTCATCATGAGTCCCCG+TGG - chr5.4:7291738-7291757 MS.gene015374:intron 55.0%
GATGCAGAGAACCCTCCAAG+AGG - chr5.4:7292110-7292129 MS.gene015374:intron 55.0%
TCGCAGGCGTTTCTTCGCTA+TGG - chr5.4:7291410-7291429 MS.gene015374:CDS 55.0%
! AGGCCAATGCGTAGGGCATT+TGG - chr5.4:7292077-7292096 MS.gene015374:intron 55.0%
! CCGATTTCGGTGTGGGAGAT+AGG - chr5.4:7291712-7291731 MS.gene015374:CDS 55.0%
! CTCCAAGTGAGTGGTAGTGC+TGG - chr5.4:7292149-7292168 MS.gene015374:CDS 55.0%
! GTGGTAGTGCTGGGCTGTAT+TGG - chr5.4:7292159-7292178 MS.gene015374:CDS 55.0%
! GTGGTGACCGATTTCGGTGT+GGG - chr5.4:7291705-7291724 MS.gene015374:CDS 55.0%
! TAGTGCTGGGCTGTATTGGG+TGG - chr5.4:7292163-7292182 MS.gene015374:CDS 55.0%
GCCCAGCACTACCACTCACT+TGG + chr5.4:7292154-7292173 None:intergenic 60.0%
GCCCCAGCTTCCCAATCACT+AGG + chr5.4:7292206-7292225 None:intergenic 60.0%
! GGTGGTGACCGATTTCGGTG+TGG - chr5.4:7291704-7291723 MS.gene015374:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 7290840 7292256 7290840 ID=MS.gene015374
chr5.4 mRNA 7290840 7292256 7290840 ID=MS.gene015374.t1;Parent=MS.gene015374
chr5.4 exon 7292118 7292256 7292118 ID=MS.gene015374.t1.exon1;Parent=MS.gene015374.t1
chr5.4 CDS 7292118 7292256 7292118 ID=cds.MS.gene015374.t1;Parent=MS.gene015374.t1
chr5.4 exon 7291631 7291737 7291631 ID=MS.gene015374.t1.exon2;Parent=MS.gene015374.t1
chr5.4 CDS 7291631 7291737 7291631 ID=cds.MS.gene015374.t1;Parent=MS.gene015374.t1
chr5.4 exon 7291125 7291439 7291125 ID=MS.gene015374.t1.exon3;Parent=MS.gene015374.t1
chr5.4 CDS 7291125 7291439 7291125 ID=cds.MS.gene015374.t1;Parent=MS.gene015374.t1
chr5.4 exon 7290840 7291037 7290840 ID=MS.gene015374.t1.exon4;Parent=MS.gene015374.t1
chr5.4 CDS 7290840 7291037 7290840 ID=cds.MS.gene015374.t1;Parent=MS.gene015374.t1
Gene Sequence

>MS.gene015374

ATGATGGAACCTAATTTTAAGCACCAAATTGGTTTTGTTTGTGTCATATTGCTCTTACCTGTCTTGTGTTCCTCTCAAGACTCTTTTGTTTGCTCTAGAGCAACCTATTATGGTAGCCCAGATTGTTATGCAAATCCAAGTAAGTGTCTTCTACTAATATATACTCGTGCAAAATTTATTATATATAGTGCATGTGACATAGCACATTATTTAAAAAAATTATACATAAAATTTTAATATATTAATTATTATGTTACTATTTTCTTTGTATTTTAATCTCGATCATTTATCTCATTCAATTTTTATCTCAAATTGGTTAACCTACTCAACCCTGTCAATTTTTATAAATGTGTATAGAGTGTTGTGCACATTTTTTAGGTTTGACATGTTTTTGCGACCGATTTATAAACCGATTCAATGAGACAGTATACAACATTTTTTTCCGGTGAACCTAGACATTGCATTACTTTGGCTCTTTGCATAAAATACATAATCTGAGTGGCTATTAACCTGTTTTAGAGGGAGCTTGTGGCTATGGTGATTATGGACAGACAGTAAATGATGGCAATGTCGCAGGCGTTTCTTCGCTATGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTAATAACTTTACTTAACTTTACTATTATTTTACGCGTGTTAATTAATGAATATGAAAAAATATGATTTATCATATATTCATTAAATGATGTGACATTATTTTGAAGTAATATATATTATAAAGGAAAAATTGTACCAACATCAACTAACAATTAGTTACTTATGAAATATAATAAATAATGATGAAATAGGTGAGGTGCAAAATACCAGAATTGTGTGACGAGAATGGAGCATATGTGGTGGTGACCGATTTCGGTGTGGGAGATAGGACAGACTTCATCATGAGTCCCCGTGGCTATTCAAATTTGGGCAAAAATGGTGATGCATCTGCGGAACTTTTTAAATATGGTGTGGTGGATATAGAATATAAAAGAATCCCTTGCAAATACAATGGCTATAATATCTTGTTTAAGGTCCATGAACGCAGCAAAAATCCTCACTACTTAGCCATTCTTATTCTCTATGTTGGTGGAACAAATGATGTAACTGCTGTTCAGTTGTGGCAGGTATACCTTTATTTTGAGATTGTTAATATTTTTTTAGTTACATTTCTTGAAATTGAATTGGGTTTACTTGAAATGGTAATGGAACAGGAAGATTGCCAAGAATGGAGGCCAATGCGTAGGGCATTTGGAACAGTGTTTGATGCAGAGAACCCTCCAAGAGGTGAGATCAAGTTGAGGCTCCAAGTGAGTGGTAGTGCTGGGCTGTATTGGGTGGAGTCCAAGAATGTTATTCCTAGTGATTGGGAAGCTGGGGCTGTTTATGACTCACAAATTCAGTTTGATTAA
Protein sequence

>MS.gene015374.t1

MMEPNFKHQIGFVCVILLLPVLCSSQDSFVCSRATYYGSPDCYANPKGACGYGDYGQTVNDGNVAGVSSLWKNGSGCGACYQVRCKIPELCDENGAYVVVTDFGVGDRTDFIMSPRGYSNLGKNGDASAELFKYGVVDIEYKRIPCKYNGYNILFKVHERSKNPHYLAILILYVGGTNDVTAVQLWQEDCQEWRPMRRAFGTVFDAENPPRGEIKLRLQVSGSAGLYWVESKNVIPSDWEAGAVYDSQIQFD