Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015621.t1 | XP_003630990.1 | 96.8 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 1.30E-156 | 562.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015621.t1 | Q9LFD5 | 44.7 | 262 | 138 | 3 | 29 | 290 | 3 | 257 | 1.3e-43 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015621.t1 | G7LBH9 | 96.8 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 9.6e-157 | 562.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015621 | MS.gene79606 | PPI |
| MS.gene015621 | MS.gene043248 | PPI |
| MS.gene015621 | MS.gene021689 | PPI |
| MS.gene015621 | MS.gene92820 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015621.t1 | MTR_8g105910 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 610 |
| MS.gene015621.t1 | MTR_1g032860 | 66.450 | 307 | 101 | 2 | 1 | 307 | 1 | 305 | 8.70e-141 | 400 |
| MS.gene015621.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 3 | 272 | 3.64e-93 | 278 |
| MS.gene015621.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 19 | 288 | 9.70e-93 | 277 |
| MS.gene015621.t1 | MTR_5g029640 | 58.607 | 244 | 97 | 1 | 31 | 270 | 3 | 246 | 6.01e-90 | 276 |
| MS.gene015621.t1 | MTR_5g029640 | 60.000 | 140 | 56 | 0 | 131 | 270 | 279 | 418 | 3.29e-46 | 162 |
| MS.gene015621.t1 | MTR_7g086080 | 40.964 | 249 | 129 | 2 | 32 | 262 | 4 | 252 | 1.66e-62 | 199 |
| MS.gene015621.t1 | MTR_5g039130 | 38.115 | 244 | 128 | 3 | 27 | 251 | 3 | 242 | 1.27e-45 | 155 |
| MS.gene015621.t1 | MTR_7g010100 | 34.818 | 247 | 129 | 6 | 33 | 251 | 7 | 249 | 2.18e-31 | 118 |
| MS.gene015621.t1 | MTR_5g038107 | 63.333 | 60 | 22 | 0 | 31 | 90 | 3 | 62 | 2.08e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015621.t1 | AT4G17720 | 57.037 | 270 | 102 | 5 | 33 | 295 | 5 | 267 | 7.39e-95 | 283 |
| MS.gene015621.t1 | AT1G67950 | 55.906 | 254 | 105 | 1 | 17 | 270 | 14 | 260 | 1.67e-94 | 281 |
| MS.gene015621.t1 | AT1G67950 | 57.613 | 243 | 96 | 1 | 28 | 270 | 26 | 261 | 2.76e-94 | 281 |
| MS.gene015621.t1 | AT1G67950 | 56.078 | 255 | 104 | 2 | 17 | 270 | 14 | 261 | 2.57e-93 | 278 |
| MS.gene015621.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 3.61e-88 | 266 |
| MS.gene015621.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 3.61e-88 | 266 |
| MS.gene015621.t1 | AT5G16840 | 54.741 | 232 | 102 | 2 | 29 | 260 | 3 | 231 | 4.95e-81 | 246 |
| MS.gene015621.t1 | AT5G16840 | 54.741 | 232 | 101 | 2 | 29 | 260 | 3 | 230 | 2.08e-80 | 244 |
| MS.gene015621.t1 | AT5G16840 | 54.783 | 230 | 100 | 2 | 31 | 260 | 3 | 228 | 7.59e-80 | 243 |
| MS.gene015621.t1 | AT1G67950 | 54.808 | 208 | 87 | 1 | 63 | 270 | 1 | 201 | 3.40e-73 | 225 |
| MS.gene015621.t1 | AT5G32450 | 44.400 | 250 | 120 | 2 | 32 | 262 | 5 | 254 | 4.92e-67 | 211 |
| MS.gene015621.t1 | AT1G14340 | 37.021 | 235 | 129 | 3 | 34 | 253 | 9 | 239 | 1.31e-41 | 144 |
| MS.gene015621.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 2.73e-26 | 104 |
| MS.gene015621.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 2.73e-26 | 104 |
Find 59 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAACCCCTTGATCTTTA+TGG | 0.155369 | 4.1:-1325175 | None:intergenic |
| TGCTCCCTGTGTATTCTTAA+AGG | 0.217148 | 4.1:-1325930 | None:intergenic |
| GGACTAAATGGTTGAGCTTC+AGG | 0.256983 | 4.1:-1326177 | None:intergenic |
| GAGACATTAATTGTCCAATT+TGG | 0.261504 | 4.1:-1325221 | None:intergenic |
| CCTGATTTAACAGGATCTTT+TGG | 0.271247 | 4.1:-1327009 | None:intergenic |
| AATCTACAATTACACCAAAT+TGG | 0.277160 | 4.1:+1325207 | MS.gene015621:CDS |
| TCAGGTGATGATAGTAGATT+TGG | 0.285077 | 4.1:+1327027 | MS.gene015621:CDS |
| CAGCAGCAGGAGTCTGCTTT+TGG | 0.298826 | 4.1:-1326480 | None:intergenic |
| ATGGCGTTCGTCAAAGGATT+TGG | 0.339452 | 4.1:-1326578 | None:intergenic |
| ATTTGGTGTAATTGTAGATT+GGG | 0.343560 | 4.1:-1325204 | None:intergenic |
| CTATCATCACCTGATTTAAC+AGG | 0.366026 | 4.1:-1327018 | None:intergenic |
| TAGGTGCTTACAGGACTAAA+TGG | 0.367374 | 4.1:-1326189 | None:intergenic |
| GCTTCCATCGACCGTAAAAT+CGG | 0.392626 | 4.1:+1326631 | MS.gene015621:CDS |
| CCAAAAGATCCTGTTAAATC+AGG | 0.398256 | 4.1:+1327009 | MS.gene015621:CDS |
| AATTTGGTGTAATTGTAGAT+TGG | 0.408821 | 4.1:-1325205 | None:intergenic |
| AAACTCTTTGATATCCTTCT+CGG | 0.411550 | 4.1:-1325726 | None:intergenic |
| TTGACTGATAAACTAAGTAT+TGG | 0.438409 | 4.1:+1326655 | MS.gene015621:CDS |
| GAGCAAAAGGCAAGTGATGC+TGG | 0.451069 | 4.1:+1326763 | MS.gene015621:CDS |
| AGCAATCCTTATGTATCAAC+CGG | 0.460676 | 4.1:+1326799 | MS.gene015621:CDS |
| TCAAATGGCGTGATGGTGAC+AGG | 0.461655 | 4.1:-1326138 | None:intergenic |
| CAGGTGATGATAGTAGATTT+GGG | 0.463823 | 4.1:+1327028 | MS.gene015621:CDS |
| TCAGCCTTCTTAACAGCAGC+AGG | 0.470780 | 4.1:-1326493 | None:intergenic |
| GACCATGGAGAAGGTCGAAA+TGG | 0.472925 | 4.1:+1326885 | MS.gene015621:CDS |
| GACTAAATGGTTGAGCTTCA+GGG | 0.476963 | 4.1:-1326176 | None:intergenic |
| ATGTATCAACCGGAGCTTCG+TGG | 0.477069 | 4.1:+1326809 | MS.gene015621:CDS |
| AAGAGATCATTTACAGTGAA+AGG | 0.479981 | 4.1:+1326923 | MS.gene015621:CDS |
| AACAAAACCTTTGGCAAGCA+TGG | 0.482332 | 4.1:-1326530 | None:intergenic |
| GACTCCTGCTGCTGTTAAGA+AGG | 0.488682 | 4.1:+1326489 | MS.gene015621:CDS |
| CCAGTGGACCATAAAGATCA+AGG | 0.496454 | 4.1:+1325167 | MS.gene015621:CDS |
| TTATGCTGTTGCTGAGCAAA+AGG | 0.504065 | 4.1:+1326750 | MS.gene015621:CDS |
| CCTTGATCTTTATGGTCCAC+TGG | 0.505164 | 4.1:-1325167 | None:intergenic |
| GACAGGAGAATTTGCTATGT+TGG | 0.511315 | 4.1:-1326121 | None:intergenic |
| TAAGTGATGGCGTTCGTCAA+AGG | 0.516029 | 4.1:-1326584 | None:intergenic |
| ACTAAATGGTTGAGCTTCAG+GGG | 0.517698 | 4.1:-1326175 | None:intergenic |
| GCTCGACACCCACGAAGCTC+CGG | 0.518595 | 4.1:-1326818 | None:intergenic |
| GACCATAAAGATCAAGGGGT+TGG | 0.525650 | 4.1:+1325173 | MS.gene015621:CDS |
| GAAGCTCCGGTTGATACATA+AGG | 0.526434 | 4.1:-1326805 | None:intergenic |
| GGCCATTTCGACCTTCTCCA+TGG | 0.533969 | 4.1:-1326887 | None:intergenic |
| TGTATCAACCGGAGCTTCGT+GGG | 0.542390 | 4.1:+1326810 | MS.gene015621:CDS |
| CACTCTGAGAAACCTTCAGT+TGG | 0.554582 | 4.1:+1326976 | MS.gene015621:CDS |
| AGACACAGCGGTGCTCTTGA+CGG | 0.555982 | 4.1:+1325952 | MS.gene015621:CDS |
| GACCTTCTCCATGGTCATTG+TGG | 0.556836 | 4.1:-1326878 | None:intergenic |
| GGAGAAGTACTTCCAACTGA+AGG | 0.564400 | 4.1:-1326988 | None:intergenic |
| TTATTATATGCAGGTTCCAG+TGG | 0.564713 | 4.1:+1325151 | MS.gene015621:intron |
| CAGTGGACCATAAAGATCAA+GGG | 0.577238 | 4.1:+1325168 | MS.gene015621:CDS |
| TTTGGTGTAATTGTAGATTG+GGG | 0.593002 | 4.1:-1325203 | None:intergenic |
| GGAGAAGGTCGAAATGGCCG+AGG | 0.599248 | 4.1:+1326891 | MS.gene015621:CDS |
| GTGAGCACCATGCTTGCCAA+AGG | 0.609575 | 4.1:+1326523 | MS.gene015621:CDS |
| AAGCATTTGAAATTAAGTGA+TGG | 0.611170 | 4.1:-1326597 | None:intergenic |
| ATCAATGACTGCGACCGAGA+AGG | 0.612115 | 4.1:+1325712 | MS.gene015621:CDS |
| GATCTCTTTCTTATCAACCT+CGG | 0.612294 | 4.1:-1326908 | None:intergenic |
| TGTTACCTTTAAGAATACAC+AGG | 0.630422 | 4.1:+1325925 | MS.gene015621:CDS |
| ACGGTCGATGGAAGCAACTG+TGG | 0.631720 | 4.1:-1326623 | None:intergenic |
| AACCACAATGACCATGGAGA+AGG | 0.639861 | 4.1:+1326876 | MS.gene015621:CDS |
| AGATGTAACCACAATGACCA+TGG | 0.653319 | 4.1:+1326870 | MS.gene015621:CDS |
| AGTGGACCATAAAGATCAAG+GGG | 0.658714 | 4.1:+1325169 | MS.gene015621:CDS |
| GTTACCTTTAAGAATACACA+GGG | 0.687476 | 4.1:+1325926 | MS.gene015621:CDS |
| CTAAATGGTTGAGCTTCAGG+GGG | 0.692728 | 4.1:-1326174 | None:intergenic |
| TACACAGGGAGCAGACACAG+CGG | 0.763107 | 4.1:+1325940 | MS.gene015621:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAAAGTAATATAAATA+TGG | + | chr4.1:1324913-1324932 | MS.gene015621:intron | 10.0% |
| !! | TATACATCTTATAAATTTAT+CGG | - | chr4.1:1326338-1326357 | None:intergenic | 10.0% |
| !! | TTATATATTCTATTTATCAA+TGG | - | chr4.1:1326019-1326038 | None:intergenic | 10.0% |
| !!! | CAGATTATTATTATTATTTT+TGG | + | chr4.1:1326057-1326076 | MS.gene015621:intron | 10.0% |
| !! | ATTAAAATGGAAGGAAAAAA+AGG | - | chr4.1:1325815-1325834 | None:intergenic | 20.0% |
| !! | ATTACAAATCATAGATTGAA+TGG | - | chr4.1:1324898-1324917 | None:intergenic | 20.0% |
| !! | TAATAACTAGATCCATATAT+AGG | - | chr4.1:1324737-1324756 | None:intergenic | 20.0% |
| !!! | AGAAGTTCATATTTTAATCA+AGG | - | chr4.1:1325077-1325096 | None:intergenic | 20.0% |
| !!! | AGCATTTTATTATTATATGC+AGG | + | chr4.1:1325142-1325161 | MS.gene015621:intron | 20.0% |
| !!! | TTTTTATGTGTTCCTATATA+TGG | + | chr4.1:1324722-1324741 | MS.gene015621:intron | 20.0% |
| ! | AATCTACAATTACACCAAAT+TGG | + | chr4.1:1325207-1325226 | MS.gene015621:CDS | 25.0% |
| ! | AGCAATGATACTCATTAAAA+TGG | - | chr4.1:1325828-1325847 | None:intergenic | 25.0% |
| ! | AGGTAAAAATGAATCAACTT+AGG | - | chr4.1:1325659-1325678 | None:intergenic | 25.0% |
| ! | ATAAATCCATAAATGCATAG+TGG | + | chr4.1:1325446-1325465 | MS.gene015621:intron | 25.0% |
| ! | ATCACAAATTGATGAATATC+AGG | + | chr4.1:1325002-1325021 | MS.gene015621:intron | 25.0% |
| ! | ATGATACTCATTAAAATGGA+AGG | - | chr4.1:1325824-1325843 | None:intergenic | 25.0% |
| ! | GAACAGATAAAAACTAACTT+AGG | - | chr4.1:1326211-1326230 | None:intergenic | 25.0% |
| ! | TAATTCGATACTGGTATTAT+AGG | - | chr4.1:1326240-1326259 | None:intergenic | 25.0% |
| ! | TCACAAATTGATGAATATCA+GGG | + | chr4.1:1325003-1325022 | MS.gene015621:intron | 25.0% |
| ! | TTCATCAATTTGTGATTTGA+TGG | - | chr4.1:1324998-1325017 | None:intergenic | 25.0% |
| ! | TTGACTGATAAACTAAGTAT+TGG | + | chr4.1:1326655-1326674 | MS.gene015621:CDS | 25.0% |
| !! | AAGCATTTGAAATTAAGTGA+TGG | - | chr4.1:1326600-1326619 | None:intergenic | 25.0% |
| !! | ATTTTCACAATTCACTTACA+TGG | + | chr4.1:1325863-1325882 | MS.gene015621:intron | 25.0% |
| !! | TTTTCCTAAAACAAAACCTT+TGG | - | chr4.1:1326542-1326561 | None:intergenic | 25.0% |
| !!! | AAAGGTTTTGTTTTAGGAAA+AGG | + | chr4.1:1326541-1326560 | MS.gene015621:CDS | 25.0% |
| !!! | AATTTGGTGTAATTGTAGAT+TGG | - | chr4.1:1325208-1325227 | None:intergenic | 25.0% |
| !!! | ATTTGGTGTAATTGTAGATT+GGG | - | chr4.1:1325207-1325226 | None:intergenic | 25.0% |
| AAACTCTTTGATATCCTTCT+CGG | - | chr4.1:1325729-1325748 | None:intergenic | 30.0% | |
| AAATATGGTGATCCCTAATA+AGG | + | chr4.1:1324928-1324947 | MS.gene015621:intron | 30.0% | |
| AAATGAAAAAGTGAGAGAGA+TGG | + | chr4.1:1326690-1326709 | MS.gene015621:CDS | 30.0% | |
| AAGAGATCATTTACAGTGAA+AGG | + | chr4.1:1326923-1326942 | MS.gene015621:CDS | 30.0% | |
| AATACCAACACATGACAATA+AGG | - | chr4.1:1325576-1325595 | None:intergenic | 30.0% | |
| AGAGATGGATGAAAAATTTC+AGG | + | chr4.1:1326705-1326724 | MS.gene015621:CDS | 30.0% | |
| ATATTTATATTGCAGTGTCC+AGG | - | chr4.1:1325349-1325368 | None:intergenic | 30.0% | |
| ATGCTTCTCTTTATAGTACA+GGG | + | chr4.1:1326096-1326115 | MS.gene015621:intron | 30.0% | |
| CTAGAGTGAAAACATGATAT+TGG | - | chr4.1:1325323-1325342 | None:intergenic | 30.0% | |
| GAGACATTAATTGTCCAATT+TGG | - | chr4.1:1325224-1325243 | None:intergenic | 30.0% | |
| GTATGACTCATTTATTTAGC+AGG | + | chr4.1:1326288-1326307 | MS.gene015621:intron | 30.0% | |
| TTATCTTAGCAGTAAAAGTG+TGG | + | chr4.1:1326257-1326276 | MS.gene015621:intron | 30.0% | |
| TTGAATCCACTATGCATTTA+TGG | - | chr4.1:1325455-1325474 | None:intergenic | 30.0% | |
| ! | AAAGAGTTTTTCTCATTCTC+TGG | + | chr4.1:1325740-1325759 | MS.gene015621:CDS | 30.0% |
| ! | ATAATTTTCAAATGGCGTGA+TGG | - | chr4.1:1326148-1326167 | None:intergenic | 30.0% |
| ! | GGAAGCTGATAATTTTCAAA+TGG | - | chr4.1:1326156-1326175 | None:intergenic | 30.0% |
| ! | GTTACCTTTAAGAATACACA+GGG | + | chr4.1:1325926-1325945 | MS.gene015621:CDS | 30.0% |
| ! | TGTTACCTTTAAGAATACAC+AGG | + | chr4.1:1325925-1325944 | MS.gene015621:CDS | 30.0% |
| ! | TTTGGTGTAATTGTAGATTG+GGG | - | chr4.1:1325206-1325225 | None:intergenic | 30.0% |
| ! | TTTTCTGATTATGTTGTAGC+AGG | - | chr4.1:1325377-1325396 | None:intergenic | 30.0% |
| !! | AATGCATAGTGGATTCAAAT+TGG | + | chr4.1:1325457-1325476 | MS.gene015621:intron | 30.0% |
| !! | AGTTGATTCATTTTTACCTC+TGG | + | chr4.1:1325660-1325679 | MS.gene015621:intron | 30.0% |
| !! | ATGCATAGTGGATTCAAATT+GGG | + | chr4.1:1325458-1325477 | MS.gene015621:intron | 30.0% |
| !! | TATCAGTCAAACCGATTTTA+CGG | - | chr4.1:1326645-1326664 | None:intergenic | 30.0% |
| !!! | ACTTACATGGAATTTTTTGC+AGG | + | chr4.1:1325876-1325895 | MS.gene015621:intron | 30.0% |
| !!! | CTTACATGGAATTTTTTGCA+GGG | + | chr4.1:1325877-1325896 | MS.gene015621:intron | 30.0% |
| !!! | TTGCTGATTTTAACTGCTTT+TGG | + | chr4.1:1325521-1325540 | MS.gene015621:intron | 30.0% |
| AAAAAAAGGATTGCATTGCG+AGG | - | chr4.1:1325801-1325820 | None:intergenic | 35.0% | |
| AAACTAACTTAGGTGCTTAC+AGG | - | chr4.1:1326201-1326220 | None:intergenic | 35.0% | |
| AGCAATCCTTATGTATCAAC+CGG | + | chr4.1:1326799-1326818 | MS.gene015621:CDS | 35.0% | |
| CACTACAATTACAAACACAG+TGG | - | chr4.1:1325029-1325048 | None:intergenic | 35.0% | |
| CAGGTGATGATAGTAGATTT+GGG | + | chr4.1:1327028-1327047 | MS.gene015621:CDS | 35.0% | |
| CATGCTTCTCTTTATAGTAC+AGG | + | chr4.1:1326095-1326114 | MS.gene015621:intron | 35.0% | |
| CCAAAAGATCCTGTTAAATC+AGG | + | chr4.1:1327009-1327028 | MS.gene015621:CDS | 35.0% | |
| CGTGCATGAAAATACATCAA+TGG | + | chr4.1:1324970-1324989 | MS.gene015621:intron | 35.0% | |
| CTATCATCACCTGATTTAAC+AGG | - | chr4.1:1327021-1327040 | None:intergenic | 35.0% | |
| CTGCTAAGATAATTCGATAC+TGG | - | chr4.1:1326249-1326268 | None:intergenic | 35.0% | |
| GATCTCTTTCTTATCAACCT+CGG | - | chr4.1:1326911-1326930 | None:intergenic | 35.0% | |
| TAACCTTTGATGTTGATCTC+AGG | + | chr4.1:1326456-1326475 | MS.gene015621:intron | 35.0% | |
| TCAGGTGATGATAGTAGATT+TGG | + | chr4.1:1327027-1327046 | MS.gene015621:CDS | 35.0% | |
| TTACCTCTGGCAGATAAAAA+CGG | + | chr4.1:1325673-1325692 | MS.gene015621:intron | 35.0% | |
| TTATTATATGCAGGTTCCAG+TGG | + | chr4.1:1325151-1325170 | MS.gene015621:intron | 35.0% | |
| ! | CCTGATTTAACAGGATCTTT+TGG | - | chr4.1:1327012-1327031 | None:intergenic | 35.0% |
| ! | TGATCCCTAATAAGGTTGAT+GGG | + | chr4.1:1324936-1324955 | MS.gene015621:intron | 35.0% |
| !!! | CTTGCCAAAGGTTTTGTTTT+AGG | + | chr4.1:1326535-1326554 | MS.gene015621:CDS | 35.0% |
| AACAAAACCTTTGGCAAGCA+TGG | - | chr4.1:1326533-1326552 | None:intergenic | 40.0% | |
| ACTAAATGGTTGAGCTTCAG+GGG | - | chr4.1:1326178-1326197 | None:intergenic | 40.0% | |
| AGATGTAACCACAATGACCA+TGG | + | chr4.1:1326870-1326889 | MS.gene015621:CDS | 40.0% | |
| AGTGGACCATAAAGATCAAG+GGG | + | chr4.1:1325169-1325188 | MS.gene015621:CDS | 40.0% | |
| CAGTGGACCATAAAGATCAA+GGG | + | chr4.1:1325168-1325187 | MS.gene015621:CDS | 40.0% | |
| CTGGCAGATAAAAACGGTTA+AGG | + | chr4.1:1325679-1325698 | MS.gene015621:intron | 40.0% | |
| GACTAAATGGTTGAGCTTCA+GGG | - | chr4.1:1326179-1326198 | None:intergenic | 40.0% | |
| GATTGAATGGTCTACACGTA+CGG | - | chr4.1:1324885-1324904 | None:intergenic | 40.0% | |
| GTGATCCCTAATAAGGTTGA+TGG | + | chr4.1:1324935-1324954 | MS.gene015621:intron | 40.0% | |
| TAGGTGCTTACAGGACTAAA+TGG | - | chr4.1:1326192-1326211 | None:intergenic | 40.0% | |
| TGCTCCCTGTGTATTCTTAA+AGG | - | chr4.1:1325933-1325952 | None:intergenic | 40.0% | |
| TTATGCTGTTGCTGAGCAAA+AGG | + | chr4.1:1326750-1326769 | MS.gene015621:CDS | 40.0% | |
| ! | ATGTTTTCACTCTAGATGCC+TGG | + | chr4.1:1325328-1325347 | MS.gene015621:intron | 40.0% |
| ! | TCTGCCTTATTGTCATGTGT+TGG | + | chr4.1:1325569-1325588 | MS.gene015621:intron | 40.0% |
| !! | GACAGGAGAATTTGCTATGT+TGG | - | chr4.1:1326124-1326143 | None:intergenic | 40.0% |
| !! | TAACCGTTTTTATCTGCCAG+AGG | - | chr4.1:1325679-1325698 | None:intergenic | 40.0% |
| AACCACAATGACCATGGAGA+AGG | + | chr4.1:1326876-1326895 | MS.gene015621:CDS | 45.0% | |
| ACCCTCCCATCAACCTTATT+AGG | - | chr4.1:1324944-1324963 | None:intergenic | 45.0% | |
| ATGGCGTTCGTCAAAGGATT+TGG | - | chr4.1:1326581-1326600 | None:intergenic | 45.0% | |
| CCAGTGGACCATAAAGATCA+AGG | + | chr4.1:1325167-1325186 | MS.gene015621:CDS | 45.0% | |
| CCCTCCCATCAACCTTATTA+GGG | - | chr4.1:1324943-1324962 | None:intergenic | 45.0% | |
| CCTTGATCTTTATGGTCCAC+TGG | - | chr4.1:1325170-1325189 | None:intergenic | 45.0% | |
| CTAAATGGTTGAGCTTCAGG+GGG | - | chr4.1:1326177-1326196 | None:intergenic | 45.0% | |
| CTCCAACCCCTTGATCTTTA+TGG | - | chr4.1:1325178-1325197 | None:intergenic | 45.0% | |
| GACCATAAAGATCAAGGGGT+TGG | + | chr4.1:1325173-1325192 | MS.gene015621:CDS | 45.0% | |
| GCTTCCATCGACCGTAAAAT+CGG | + | chr4.1:1326631-1326650 | MS.gene015621:CDS | 45.0% | |
| GGACTAAATGGTTGAGCTTC+AGG | - | chr4.1:1326180-1326199 | None:intergenic | 45.0% | |
| GGTCCTGAGATCAACATCAA+AGG | - | chr4.1:1326462-1326481 | None:intergenic | 45.0% | |
| ! | CACTCTGAGAAACCTTCAGT+TGG | + | chr4.1:1326976-1326995 | MS.gene015621:CDS | 45.0% |
| ! | GAAGCTCCGGTTGATACATA+AGG | - | chr4.1:1326808-1326827 | None:intergenic | 45.0% |
| ! | TAAGTGATGGCGTTCGTCAA+AGG | - | chr4.1:1326587-1326606 | None:intergenic | 45.0% |
| !! | CAAACCGATTTTACGGTCGA+TGG | - | chr4.1:1326638-1326657 | None:intergenic | 45.0% |
| !! | CCCTAATAAGGTTGATGGGA+GGG | + | chr4.1:1324940-1324959 | MS.gene015621:intron | 45.0% |
| !! | GGAGAAGTACTTCCAACTGA+AGG | - | chr4.1:1326991-1327010 | None:intergenic | 45.0% |
| !! | TCCCTAATAAGGTTGATGGG+AGG | + | chr4.1:1324939-1324958 | MS.gene015621:intron | 45.0% |
| !! | AAAATATAAAATATATGAAT+TGG | + | chr4.1:1325294-1325313 | MS.gene015621:intron | 5.0% |
| !! | AAATATAAAATATATGAATT+GGG | + | chr4.1:1325295-1325314 | MS.gene015621:intron | 5.0% |
| ATCAATGACTGCGACCGAGA+AGG | + | chr4.1:1325712-1325731 | MS.gene015621:CDS | 50.0% | |
| ATGTATCAACCGGAGCTTCG+TGG | + | chr4.1:1326809-1326828 | MS.gene015621:CDS | 50.0% | |
| GACCATGGAGAAGGTCGAAA+TGG | + | chr4.1:1326885-1326904 | MS.gene015621:CDS | 50.0% | |
| GACCTTCTCCATGGTCATTG+TGG | - | chr4.1:1326881-1326900 | None:intergenic | 50.0% | |
| GACTCCTGCTGCTGTTAAGA+AGG | + | chr4.1:1326489-1326508 | MS.gene015621:CDS | 50.0% | |
| GAGCAAAAGGCAAGTGATGC+TGG | + | chr4.1:1326763-1326782 | MS.gene015621:CDS | 50.0% | |
| TCAGCCTTCTTAACAGCAGC+AGG | - | chr4.1:1326496-1326515 | None:intergenic | 50.0% | |
| TGAATGGTCTACACGTACGG+AGG | - | chr4.1:1324882-1324901 | None:intergenic | 50.0% | |
| TGTATCAACCGGAGCTTCGT+GGG | + | chr4.1:1326810-1326829 | MS.gene015621:CDS | 50.0% | |
| ! | TCAAATGGCGTGATGGTGAC+AGG | - | chr4.1:1326141-1326160 | None:intergenic | 50.0% |
| ACGGTCGATGGAAGCAACTG+TGG | - | chr4.1:1326626-1326645 | None:intergenic | 55.0% | |
| AGACACAGCGGTGCTCTTGA+CGG | + | chr4.1:1325952-1325971 | MS.gene015621:CDS | 55.0% | |
| GGCCATTTCGACCTTCTCCA+TGG | - | chr4.1:1326890-1326909 | None:intergenic | 55.0% | |
| GTGAGCACCATGCTTGCCAA+AGG | + | chr4.1:1326523-1326542 | MS.gene015621:CDS | 55.0% | |
| TACACAGGGAGCAGACACAG+CGG | + | chr4.1:1325940-1325959 | MS.gene015621:CDS | 55.0% | |
| ! | CAGCAGCAGGAGTCTGCTTT+TGG | - | chr4.1:1326483-1326502 | None:intergenic | 55.0% |
| CAGCGGTGCTCTTGACGGTA+TGG | + | chr4.1:1325957-1325976 | MS.gene015621:intron | 60.0% | |
| GGAGAAGGTCGAAATGGCCG+AGG | + | chr4.1:1326891-1326910 | MS.gene015621:CDS | 60.0% | |
| GCTCGACACCCACGAAGCTC+CGG | - | chr4.1:1326821-1326840 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1324647 | 1327059 | 1324647 | ID=MS.gene015621 |
| chr4.1 | mRNA | 1324647 | 1327059 | 1324647 | ID=MS.gene015621.t1;Parent=MS.gene015621 |
| chr4.1 | exon | 1324647 | 1324652 | 1324647 | ID=MS.gene015621.t1.exon1;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1324647 | 1324652 | 1324647 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| chr4.1 | exon | 1325164 | 1325247 | 1325164 | ID=MS.gene015621.t1.exon2;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1325164 | 1325247 | 1325164 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| chr4.1 | exon | 1325686 | 1325789 | 1325686 | ID=MS.gene015621.t1.exon3;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1325686 | 1325789 | 1325686 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| chr4.1 | exon | 1325898 | 1325973 | 1325898 | ID=MS.gene015621.t1.exon4;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1325898 | 1325973 | 1325898 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| chr4.1 | exon | 1326117 | 1326200 | 1326117 | ID=MS.gene015621.t1.exon5;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1326117 | 1326200 | 1326117 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| chr4.1 | exon | 1326478 | 1327059 | 1326478 | ID=MS.gene015621.t1.exon6;Parent=MS.gene015621.t1 |
| chr4.1 | CDS | 1326478 | 1327059 | 1326478 | ID=cds.MS.gene015621.t1;Parent=MS.gene015621.t1 |
| Gene Sequence |
| Protein sequence |
