Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043248.t1 | XP_003621177.1 | 92.5 | 254 | 19 | 0 | 1 | 254 | 1 | 254 | 1.30E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043248.t1 | Q9LFD5 | 31.7 | 202 | 111 | 5 | 7 | 203 | 7 | 186 | 2.1e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043248.t1 | G7KZY3 | 92.5 | 254 | 19 | 0 | 1 | 254 | 1 | 254 | 9.7e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043248 | MS.gene040929 | PPI |
| MS.gene043248 | MS.gene62658 | PPI |
| MS.gene043248 | MS.gene83025 | PPI |
| MS.gene058565 | MS.gene043248 | PPI |
| MS.gene043248 | MS.gene95329 | PPI |
| MS.gene015621 | MS.gene043248 | PPI |
| MS.gene043248 | MS.gene026496 | PPI |
| MS.gene043248 | MS.gene95850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043248.t1 | MTR_7g010100 | 94.882 | 254 | 13 | 0 | 1 | 254 | 1 | 254 | 5.62e-174 | 479 |
| MS.gene043248.t1 | MTR_5g039130 | 50.000 | 250 | 110 | 4 | 5 | 251 | 7 | 244 | 3.85e-81 | 244 |
| MS.gene043248.t1 | MTR_1g032860 | 33.865 | 251 | 125 | 4 | 7 | 249 | 33 | 250 | 5.57e-39 | 138 |
| MS.gene043248.t1 | MTR_7g086080 | 34.286 | 245 | 143 | 5 | 7 | 245 | 5 | 237 | 1.76e-37 | 132 |
| MS.gene043248.t1 | MTR_8g066460 | 33.333 | 255 | 132 | 5 | 7 | 252 | 5 | 230 | 8.47e-35 | 126 |
| MS.gene043248.t1 | MTR_8g066460 | 33.333 | 255 | 132 | 5 | 7 | 252 | 21 | 246 | 1.21e-34 | 126 |
| MS.gene043248.t1 | MTR_8g105910 | 33.198 | 247 | 133 | 5 | 7 | 249 | 33 | 251 | 2.58e-34 | 125 |
| MS.gene043248.t1 | MTR_5g029640 | 34.766 | 256 | 127 | 7 | 7 | 252 | 5 | 230 | 1.32e-32 | 124 |
| MS.gene043248.t1 | MTR_5g029640 | 36.364 | 143 | 75 | 4 | 114 | 252 | 272 | 402 | 1.74e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043248.t1 | AT3G01210 | 52.549 | 255 | 115 | 2 | 1 | 255 | 1 | 249 | 8.08e-73 | 223 |
| MS.gene043248.t1 | AT3G01210 | 52.549 | 255 | 115 | 2 | 1 | 255 | 1 | 249 | 8.08e-73 | 223 |
| MS.gene043248.t1 | AT1G14340 | 45.528 | 246 | 121 | 2 | 5 | 250 | 6 | 238 | 5.55e-65 | 202 |
| MS.gene043248.t1 | AT5G16840 | 34.818 | 247 | 126 | 7 | 9 | 251 | 9 | 224 | 3.62e-38 | 134 |
| MS.gene043248.t1 | AT5G16840 | 34.008 | 247 | 127 | 7 | 9 | 251 | 9 | 223 | 1.97e-37 | 132 |
| MS.gene043248.t1 | AT5G16840 | 34.008 | 247 | 127 | 7 | 9 | 251 | 7 | 221 | 2.20e-37 | 132 |
| MS.gene043248.t1 | AT5G46870 | 33.465 | 254 | 139 | 6 | 7 | 252 | 5 | 236 | 5.93e-37 | 132 |
| MS.gene043248.t1 | AT5G46870 | 33.465 | 254 | 139 | 6 | 7 | 252 | 5 | 236 | 5.93e-37 | 132 |
| MS.gene043248.t1 | AT4G17720 | 32.685 | 257 | 133 | 5 | 7 | 252 | 5 | 232 | 6.52e-36 | 130 |
| MS.gene043248.t1 | AT5G32450 | 34.008 | 247 | 140 | 5 | 7 | 244 | 6 | 238 | 3.26e-35 | 127 |
| MS.gene043248.t1 | AT1G67950 | 33.198 | 247 | 131 | 6 | 4 | 245 | 28 | 245 | 1.86e-30 | 115 |
| MS.gene043248.t1 | AT1G67950 | 33.198 | 247 | 131 | 6 | 4 | 245 | 27 | 244 | 2.00e-30 | 114 |
| MS.gene043248.t1 | AT1G67950 | 33.198 | 247 | 132 | 7 | 4 | 245 | 27 | 245 | 2.61e-30 | 114 |
| MS.gene043248.t1 | AT1G67950 | 33.333 | 213 | 109 | 5 | 38 | 245 | 1 | 185 | 1.24e-24 | 98.2 |
Find 53 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAATGCCTGAATTTA+TGG | 0.074898 | 7.2:-87619068 | None:intergenic |
| GTTTCAGGGATCAATGATTT+TGG | 0.185854 | 7.2:+87617546 | MS.gene043248:intron |
| GCTGAACTCAGCAACAAAAT+TGG | 0.265972 | 7.2:+87619034 | MS.gene043248:CDS |
| CATCATTCTCTGTCGCTCTT+GGG | 0.292251 | 7.2:-87615270 | None:intergenic |
| GGCGAAATCAGCCGCTGATT+TGG | 0.309158 | 7.2:+87619279 | MS.gene043248:CDS |
| ACATCATTCTCTGTCGCTCT+TGG | 0.337209 | 7.2:-87615271 | None:intergenic |
| AAATCAGCTGTGACCGTAAC+GGG | 0.347381 | 7.2:+87619133 | MS.gene043248:CDS |
| TGAGCAGTAATGCAGTTTCC+AGG | 0.355838 | 7.2:-87616605 | None:intergenic |
| CGTTACGGTCACAGCTGATT+TGG | 0.364880 | 7.2:-87619131 | None:intergenic |
| GCGAAATCAGCCGCTGATTT+GGG | 0.367461 | 7.2:+87619280 | MS.gene043248:CDS |
| TTGACTGAAACCATAAATTC+AGG | 0.369568 | 7.2:+87619058 | MS.gene043248:CDS |
| ATACAGATGACAGCAATAAC+TGG | 0.385974 | 7.2:+87617602 | MS.gene043248:CDS |
| GAAAGGAGCTCTCTGGGTTT+CGG | 0.388924 | 7.2:+87619240 | MS.gene043248:CDS |
| ATAGTTGCGGCAACAGTTAC+CGG | 0.400255 | 7.2:+87619166 | MS.gene043248:CDS |
| CCCTGGAGAAGCACTGACTA+TGG | 0.407984 | 7.2:+87618892 | MS.gene043248:CDS |
| ACTTCGCGAAAGGAGCTCTC+TGG | 0.423496 | 7.2:+87619233 | MS.gene043248:CDS |
| GCCATAGTCAGTGCTTCTCC+AGG | 0.433235 | 7.2:-87618893 | None:intergenic |
| AGCACTGACTATGGCCCAAC+AGG | 0.435623 | 7.2:+87618901 | MS.gene043248:CDS |
| GACAAGTTTATTTCTTCCCC+TGG | 0.448188 | 7.2:+87618875 | MS.gene043248:CDS |
| CTTCGCGAAAGGAGCTCTCT+GGG | 0.475824 | 7.2:+87619234 | MS.gene043248:CDS |
| AGTATGTAATACTGTCTTCA+TGG | 0.485803 | 7.2:-87617642 | None:intergenic |
| AGCAGCCATAGCTGCTCTCC+CGG | 0.505893 | 7.2:-87619185 | None:intergenic |
| GTCAAAACAATGGTAGCTAA+AGG | 0.506039 | 7.2:+87618926 | MS.gene043248:CDS |
| ATGCATTTCTATTTCACGCT+GGG | 0.512664 | 7.2:+87617573 | MS.gene043248:CDS |
| ATCATTCTCTGTCGCTCTTG+GGG | 0.518956 | 7.2:-87615269 | None:intergenic |
| CATTGAAAGATTTAAATATG+TGG | 0.523394 | 7.2:+87619081 | MS.gene043248:CDS |
| TATAGCTGTTGTCCCCGTTA+CGG | 0.523895 | 7.2:-87619146 | None:intergenic |
| TGCAGTAGACTCATAATCAC+TGG | 0.524529 | 7.2:-87616556 | None:intergenic |
| AGTTACCGGGAGAGCAGCTA+TGG | 0.540397 | 7.2:+87619180 | MS.gene043248:CDS |
| TTTCGCGAAGTAGCTGCTAC+TGG | 0.543753 | 7.2:-87619221 | None:intergenic |
| TTGAACGTGTTGATGTGATA+AGG | 0.555755 | 7.2:+87615323 | MS.gene043248:CDS |
| AGTAGCAGCTACTTCGCGAA+AGG | 0.561199 | 7.2:+87619223 | MS.gene043248:CDS |
| ATCATCTACAGCAGCAAACA+AGG | 0.563010 | 7.2:+87619009 | MS.gene043248:CDS |
| CAGTTAACAAATATGTATCC+CGG | 0.572446 | 7.2:+87615217 | None:intergenic |
| AGCGTGAAATAGAAATGCAT+TGG | 0.573031 | 7.2:-87617570 | None:intergenic |
| GATTTCAGCAGTATAGCCAC+CGG | 0.578842 | 7.2:-87615236 | None:intergenic |
| GGGAGAGCAGCTATGGCTGC+TGG | 0.580006 | 7.2:+87619187 | MS.gene043248:CDS |
| GAGCAGTAATGCAGTTTCCA+GGG | 0.580206 | 7.2:-87616604 | None:intergenic |
| CCATAGTCAGTGCTTCTCCA+GGG | 0.584544 | 7.2:-87618892 | None:intergenic |
| CAAATCAGCTGTGACCGTAA+CGG | 0.593214 | 7.2:+87619132 | MS.gene043248:CDS |
| GTAATACTGTCTTCATGGTG+TGG | 0.594318 | 7.2:-87617637 | None:intergenic |
| TTCGGACATGTTATCTCGTG+CGG | 0.601464 | 7.2:+87619258 | MS.gene043248:CDS |
| TAGTTGCGGCAACAGTTACC+GGG | 0.619088 | 7.2:+87619167 | MS.gene043248:CDS |
| AATGCATTTCTATTTCACGC+TGG | 0.619462 | 7.2:+87617572 | MS.gene043248:CDS |
| CATAGTCAGTGCTTCTCCAG+GGG | 0.633935 | 7.2:-87618891 | None:intergenic |
| GAGCAAAGATGCATTTGTGA+TGG | 0.651958 | 7.2:+87618958 | MS.gene043248:CDS |
| CCAACAGGTTGTCAAAACAA+TGG | 0.652844 | 7.2:+87618916 | MS.gene043248:CDS |
| TCTTCGACAGGATATGCACA+TGG | 0.669039 | 7.2:+87618853 | MS.gene043248:intron |
| ATTTCAGCAGTATAGCCACC+GGG | 0.672279 | 7.2:-87615235 | None:intergenic |
| AATCAGCTGTGACCGTAACG+GGG | 0.690827 | 7.2:+87619134 | MS.gene043248:CDS |
| TTGATGATGACCCAAATCAG+CGG | 0.695347 | 7.2:-87619290 | None:intergenic |
| GGGGACAACAGCTATAGTTG+CGG | 0.707278 | 7.2:+87619153 | MS.gene043248:CDS |
| TTAACAAATATGTATCCCGG+TGG | 0.755255 | 7.2:+87615220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTACATTTT+CGG | + | chr7.2:87617723-87617742 | MS.gene043248:intron | 10.0% |
| !! | AAATTTATGTTTCAGAATAT+TGG | + | chr7.2:87617874-87617893 | MS.gene043248:intron | 15.0% |
| !!! | CTCTAAAGTATTTATTATTA+TGG | - | chr7.2:87618482-87618501 | None:intergenic | 15.0% |
| !! | AACAAAATACTCTAATGTAA+TGG | - | chr7.2:87617461-87617480 | None:intergenic | 20.0% |
| !! | ACTAAATGAAAAGAAAACAA+TGG | - | chr7.2:87618093-87618112 | None:intergenic | 20.0% |
| !! | AGAAATATGAAATATAGTCA+AGG | - | chr7.2:87616400-87616419 | None:intergenic | 20.0% |
| !! | ATACAAAATAGAAGCTATAA+AGG | + | chr7.2:87617980-87617999 | MS.gene043248:intron | 20.0% |
| !! | ATCTATTAACAAAATACAGT+CGG | - | chr7.2:87617328-87617347 | None:intergenic | 20.0% |
| !! | CATTGAAAGATTTAAATATG+TGG | + | chr7.2:87619081-87619100 | MS.gene043248:CDS | 20.0% |
| !! | GACAAAGTTTAATAATTACA+GGG | + | chr7.2:87616331-87616350 | MS.gene043248:intron | 20.0% |
| !! | GGTTACTAAAATTACATTAA+GGG | + | chr7.2:87615974-87615993 | MS.gene043248:intron | 20.0% |
| !! | GTTCAATATATTTCATTTCT+AGG | - | chr7.2:87616206-87616225 | None:intergenic | 20.0% |
| !! | TGACAAAGTTTAATAATTAC+AGG | + | chr7.2:87616330-87616349 | MS.gene043248:intron | 20.0% |
| !! | TGGTTACTAAAATTACATTA+AGG | + | chr7.2:87615973-87615992 | MS.gene043248:intron | 20.0% |
| !!! | AATTTTAGTAACCATGAATT+TGG | - | chr7.2:87615967-87615986 | None:intergenic | 20.0% |
| !!! | ATTACATTAGAGTATTTTGT+TGG | + | chr7.2:87617460-87617479 | MS.gene043248:intron | 20.0% |
| !!! | TTTTATTTTTGATCCAAATG+TGG | + | chr7.2:87616949-87616968 | MS.gene043248:intron | 20.0% |
| ! | AAATTCATTAACCACAAATC+TGG | + | chr7.2:87615798-87615817 | MS.gene043248:intron | 25.0% |
| ! | AATGAAAAGAAAACAATGGT+TGG | - | chr7.2:87618089-87618108 | None:intergenic | 25.0% |
| ! | AGATGGTTAATAGATATATC+AGG | - | chr7.2:87616021-87616040 | None:intergenic | 25.0% |
| ! | ATAATTCAATGTTCAGAATG+TGG | + | chr7.2:87617850-87617869 | MS.gene043248:intron | 25.0% |
| ! | ATAGTAATGAGATATCCTTA+TGG | - | chr7.2:87618016-87618035 | None:intergenic | 25.0% |
| ! | ATGCAATTTAACTAAGTAAC+AGG | - | chr7.2:87618734-87618753 | None:intergenic | 25.0% |
| ! | ATTGAAAGTTGAAAAGAACA+AGG | - | chr7.2:87616682-87616701 | None:intergenic | 25.0% |
| ! | CAATTCTCTTTCAAATACTA+AGG | - | chr7.2:87615643-87615662 | None:intergenic | 25.0% |
| ! | CTCAAGTCAATATATAAATG+AGG | + | chr7.2:87617071-87617090 | MS.gene043248:intron | 25.0% |
| ! | GGTTACTTAACATTGTTTAT+TGG | + | chr7.2:87615349-87615368 | MS.gene043248:intron | 25.0% |
| ! | GTTCAAATAAGTGGTTAATT+TGG | + | chr7.2:87615722-87615741 | MS.gene043248:intron | 25.0% |
| ! | TAATGAAACACCTGAAATTA+TGG | - | chr7.2:87615904-87615923 | None:intergenic | 25.0% |
| ! | TAATTCAATGTTCAGAATGT+GGG | + | chr7.2:87617851-87617870 | MS.gene043248:intron | 25.0% |
| ! | TCAATAGATAAACTCAAGTA+AGG | - | chr7.2:87618158-87618177 | None:intergenic | 25.0% |
| ! | TCCAAATATAACTCTACAAT+GGG | + | chr7.2:87617402-87617421 | MS.gene043248:intron | 25.0% |
| ! | TTCAAGTCTATCTTACATTT+CGG | - | chr7.2:87616913-87616932 | None:intergenic | 25.0% |
| ! | TTCCAAATATAACTCTACAA+TGG | + | chr7.2:87617401-87617420 | MS.gene043248:intron | 25.0% |
| ! | TTTGCTCTTAATAATGATAC+AGG | + | chr7.2:87616532-87616551 | MS.gene043248:intron | 25.0% |
| !! | CACGAAAAATTGTCTAATTT+TGG | - | chr7.2:87615678-87615697 | None:intergenic | 25.0% |
| !! | GATTCAATTCATCTTGATTT+TGG | + | chr7.2:87617514-87617533 | MS.gene043248:intron | 25.0% |
| !! | GTTGAAATAAGTTGACAAAT+AGG | - | chr7.2:87618825-87618844 | None:intergenic | 25.0% |
| !! | TTAAGTTGCTTATCCAAATA+AGG | + | chr7.2:87618343-87618362 | MS.gene043248:intron | 25.0% |
| !!! | ATAGTTTTTGAATTTGTTCC+TGG | + | chr7.2:87615418-87615437 | MS.gene043248:intron | 25.0% |
| !!! | TTCACAATCTATTTTTACGT+TGG | + | chr7.2:87618380-87618399 | MS.gene043248:intron | 25.0% |
| !!! | TTTGTCAAATTTTGATGACA+TGG | - | chr7.2:87616317-87616336 | None:intergenic | 25.0% |
| AAAGATTGCATGTTGTAAGT+TGG | + | chr7.2:87616429-87616448 | MS.gene043248:intron | 30.0% | |
| AAATTCCTTGATACATTCTC+AGG | - | chr7.2:87615521-87615540 | None:intergenic | 30.0% | |
| ACATGGATAACCATAATTTC+AGG | + | chr7.2:87615891-87615910 | MS.gene043248:intron | 30.0% | |
| ACCCATTGTAGAGTTATATT+TGG | - | chr7.2:87617406-87617425 | None:intergenic | 30.0% | |
| AGATGACAAAGAAACCTTAT+GGG | + | chr7.2:87618629-87618648 | MS.gene043248:intron | 30.0% | |
| AGTATGTAATACTGTCTTCA+TGG | - | chr7.2:87617645-87617664 | None:intergenic | 30.0% | |
| ATAATGATAGACAGCTTCAT+TGG | + | chr7.2:87617368-87617387 | MS.gene043248:intron | 30.0% | |
| ATATAGTTGGATGAGTATGT+TGG | + | chr7.2:87617019-87617038 | MS.gene043248:intron | 30.0% | |
| ATTTGAACACCTGAAAATTG+TGG | + | chr7.2:87615931-87615950 | MS.gene043248:intron | 30.0% | |
| CATGTCAAAATTTGTGGTTA+AGG | - | chr7.2:87615876-87615895 | None:intergenic | 30.0% | |
| CCAATATGTAATCATAAACC+AGG | - | chr7.2:87615439-87615458 | None:intergenic | 30.0% | |
| CCTGGTTTATGATTACATAT+TGG | + | chr7.2:87615436-87615455 | MS.gene043248:intron | 30.0% | |
| CGATCGTTATTAACAGTTAT+AGG | + | chr7.2:87618676-87618695 | MS.gene043248:intron | 30.0% | |
| GATTGTGAAACAATTGACTA+TGG | - | chr7.2:87618369-87618388 | None:intergenic | 30.0% | |
| GCAGCTTATTTACATAATCT+AGG | + | chr7.2:87618252-87618271 | MS.gene043248:intron | 30.0% | |
| GTTAACACAGTTCAAATAAG+TGG | + | chr7.2:87615713-87615732 | MS.gene043248:intron | 30.0% | |
| GTTAACGAAGTTCAAATAAG+TGG | - | chr7.2:87616059-87616078 | None:intergenic | 30.0% | |
| GTTATCCATGTCAAAATTTG+TGG | - | chr7.2:87615882-87615901 | None:intergenic | 30.0% | |
| TAATGATAGACAGCTTCATT+GGG | + | chr7.2:87617369-87617388 | MS.gene043248:intron | 30.0% | |
| TAGTATATGTGAAGAGTTCT+TGG | + | chr7.2:87616490-87616509 | MS.gene043248:intron | 30.0% | |
| TCTTTCAATGCCTGAATTTA+TGG | - | chr7.2:87619071-87619090 | None:intergenic | 30.0% | |
| TGTAAGGTTAGATTGTGATT+AGG | - | chr7.2:87618575-87618594 | None:intergenic | 30.0% | |
| TTGACTGAAACCATAAATTC+AGG | + | chr7.2:87619058-87619077 | MS.gene043248:CDS | 30.0% | |
| TTGGTTCATTAGATGGTTAA+TGG | + | chr7.2:87615741-87615760 | MS.gene043248:intron | 30.0% | |
| TTGTATTGCTCTTCTCTTAT+GGG | - | chr7.2:87617966-87617985 | None:intergenic | 30.0% | |
| TTTGTATTGCTCTTCTCTTA+TGG | - | chr7.2:87617967-87617986 | None:intergenic | 30.0% | |
| ! | AAGGCTTTTATCATCTTTGT+TGG | + | chr7.2:87616632-87616651 | MS.gene043248:intron | 30.0% |
| ! | GGTTAATTTGGTTCATTAGA+TGG | + | chr7.2:87615734-87615753 | MS.gene043248:intron | 30.0% |
| ! | TACTGCATATGTGACTTTTA+GGG | + | chr7.2:87616572-87616591 | MS.gene043248:CDS | 30.0% |
| ! | TCTATAAAGCATGCATGTTT+TGG | + | chr7.2:87616731-87616750 | MS.gene043248:intron | 30.0% |
| ! | TGTTCAACAAACCTATGTTT+TGG | + | chr7.2:87616795-87616814 | MS.gene043248:intron | 30.0% |
| ! | TTAGATGGTTAATGGATACA+CGG | + | chr7.2:87615749-87615768 | MS.gene043248:intron | 30.0% |
| !! | AACATGTCCTAAGTTACTTT+TGG | - | chr7.2:87618128-87618147 | None:intergenic | 30.0% |
| !! | ATAAGTAAGAGAGCATTCTA+AGG | - | chr7.2:87617690-87617709 | None:intergenic | 30.0% |
| !! | CTTAACCACAAATTTTGACA+TGG | + | chr7.2:87615874-87615893 | MS.gene043248:intron | 30.0% |
| !! | TTTCGTGACAACTTTTTAAG+TGG | + | chr7.2:87615691-87615710 | MS.gene043248:intron | 30.0% |
| !! | TTTTTAGCCAGAAATACTGT+TGG | + | chr7.2:87617148-87617167 | MS.gene043248:intron | 30.0% |
| !!! | AAATACTGTTGGTTTTGAGT+AGG | + | chr7.2:87617159-87617178 | MS.gene043248:intron | 30.0% |
| !!! | ACATGTCCTAAGTTACTTTT+GGG | - | chr7.2:87618127-87618146 | None:intergenic | 30.0% |
| !!! | CAGAACTTTTTTGAATACTG+TGG | + | chr7.2:87615295-87615314 | MS.gene043248:CDS | 30.0% |
| AAACATACCTTCTTCCATGA+TGG | + | chr7.2:87618526-87618545 | MS.gene043248:intron | 35.0% | |
| AAAGGCAACTCAAATCCATA+AGG | + | chr7.2:87617998-87618017 | MS.gene043248:intron | 35.0% | |
| AATGCATTTCTATTTCACGC+TGG | + | chr7.2:87617572-87617591 | MS.gene043248:CDS | 35.0% | |
| ACACACTTGTGAGAATGTTT+GGG | + | chr7.2:87618181-87618200 | MS.gene043248:intron | 35.0% | |
| ACTGTAGCGTGAATTTAAGA+AGG | - | chr7.2:87615600-87615619 | None:intergenic | 35.0% | |
| ACTGTTAATAACGATCGAAC+AGG | - | chr7.2:87618673-87618692 | None:intergenic | 35.0% | |
| ACTTCTGACACTAAATCCTT+AGG | + | chr7.2:87618708-87618727 | MS.gene043248:intron | 35.0% | |
| AGCGTGAAATAGAAATGCAT+TGG | - | chr7.2:87617573-87617592 | None:intergenic | 35.0% | |
| AGCGTGAATTTAAGAAGGAA+GGG | - | chr7.2:87615595-87615614 | None:intergenic | 35.0% | |
| ATACAGATGACAGCAATAAC+TGG | + | chr7.2:87617602-87617621 | MS.gene043248:CDS | 35.0% | |
| ATGACTTTATCTCTCCCATA+AGG | - | chr7.2:87618646-87618665 | None:intergenic | 35.0% | |
| ATGCATTTCTATTTCACGCT+GGG | + | chr7.2:87617573-87617592 | MS.gene043248:CDS | 35.0% | |
| ATTAACCACAAATCTGGACT+TGG | + | chr7.2:87615804-87615823 | MS.gene043248:intron | 35.0% | |
| CAGATGACAAAGAAACCTTA+TGG | + | chr7.2:87618628-87618647 | MS.gene043248:intron | 35.0% | |
| CTCAAAACCAACAGTATTTC+TGG | - | chr7.2:87617158-87617177 | None:intergenic | 35.0% | |
| CTCTTTCCCAAAAGTAACTT+AGG | + | chr7.2:87618118-87618137 | MS.gene043248:intron | 35.0% | |
| CTTAAATTCACGCTACAGTT+TGG | + | chr7.2:87615601-87615620 | MS.gene043248:intron | 35.0% | |
| GTCAAAACAATGGTAGCTAA+AGG | + | chr7.2:87618926-87618945 | MS.gene043248:CDS | 35.0% | |
| GTGATCTCAAATTGTTACCA+TGG | - | chr7.2:87617762-87617781 | None:intergenic | 35.0% | |
| GTTTGTGACATCCAAATTCA+TGG | + | chr7.2:87615953-87615972 | MS.gene043248:intron | 35.0% | |
| TACACACTTGTGAGAATGTT+TGG | + | chr7.2:87618180-87618199 | MS.gene043248:intron | 35.0% | |
| TAGCGTGAATTTAAGAAGGA+AGG | - | chr7.2:87615596-87615615 | None:intergenic | 35.0% | |
| TCGGAGATATTCATAAACCA+TGG | + | chr7.2:87617742-87617761 | MS.gene043248:intron | 35.0% | |
| TGAGAAAGAACGAACATGTA+AGG | - | chr7.2:87618591-87618610 | None:intergenic | 35.0% | |
| TGTCATCTGTCATCAATAAC+AGG | - | chr7.2:87618617-87618636 | None:intergenic | 35.0% | |
| TTAACTAAGTAACAGGCCTA+AGG | - | chr7.2:87618727-87618746 | None:intergenic | 35.0% | |
| TTACTAGATACAGCACGATA+GGG | - | chr7.2:87616829-87616848 | None:intergenic | 35.0% | |
| ! | ATTGCATGTTGTAAGTTGGA+GGG | + | chr7.2:87616433-87616452 | MS.gene043248:intron | 35.0% |
| ! | CTACTGCATATGTGACTTTT+AGG | + | chr7.2:87616571-87616590 | MS.gene043248:CDS | 35.0% |
| ! | GTTTCAGGGATCAATGATTT+TGG | + | chr7.2:87617546-87617565 | MS.gene043248:intron | 35.0% |
| ! | TGTCACAAACCACAATTTTC+AGG | - | chr7.2:87615943-87615962 | None:intergenic | 35.0% |
| ! | TTGAACGTGTTGATGTGATA+AGG | + | chr7.2:87615323-87615342 | MS.gene043248:CDS | 35.0% |
| !! | CAATTGACTATGGCCTTATT+TGG | - | chr7.2:87618359-87618378 | None:intergenic | 35.0% |
| !!! | AAACACGTAGCTTTTTCAGA+GGG | + | chr7.2:87617112-87617131 | MS.gene043248:intron | 35.0% |
| !!! | CAACATGTTTTTTCTTCGAC+AGG | + | chr7.2:87618841-87618860 | MS.gene043248:intron | 35.0% |
| !!! | CATGCATGTTTTGGTTTTGT+GGG | + | chr7.2:87616740-87616759 | MS.gene043248:intron | 35.0% |
| !!! | CATTGTTTTGACAACCTGTT+GGG | - | chr7.2:87618918-87618937 | None:intergenic | 35.0% |
| !!! | TAAACACGTAGCTTTTTCAG+AGG | + | chr7.2:87617111-87617130 | MS.gene043248:intron | 35.0% |
| AAGGAAGTTACGTTGGTATG+TGG | - | chr7.2:87615857-87615876 | None:intergenic | 40.0% | |
| ACACACCTGAGAATGTATCA+AGG | + | chr7.2:87615513-87615532 | MS.gene043248:intron | 40.0% | |
| ACAGTGAAGCTAAGATAAGC+TGG | - | chr7.2:87616148-87616167 | None:intergenic | 40.0% | |
| ACTTCTACTCTCTACCATCA+TGG | - | chr7.2:87618543-87618562 | None:intergenic | 40.0% | |
| AGTATACTTCCCTAAGCGTA+CGG | - | chr7.2:87617245-87617264 | None:intergenic | 40.0% | |
| ATCATCTACAGCAGCAAACA+AGG | + | chr7.2:87619009-87619028 | MS.gene043248:CDS | 40.0% | |
| ATTGATCCCTGAAACAGCAT+TGG | - | chr7.2:87617541-87617560 | None:intergenic | 40.0% | |
| CCAACAGGTTGTCAAAACAA+TGG | + | chr7.2:87618916-87618935 | MS.gene043248:CDS | 40.0% | |
| CCATCACAAACTATGAAGCA+TGG | - | chr7.2:87616868-87616887 | None:intergenic | 40.0% | |
| CTGCATTACTGCTCAATGTA+AGG | + | chr7.2:87616613-87616632 | MS.gene043248:intron | 40.0% | |
| GAGCAAAGATGCATTTGTGA+TGG | + | chr7.2:87618958-87618977 | MS.gene043248:CDS | 40.0% | |
| GAGTAGAAGACGTATGTGTT+AGG | + | chr7.2:87616992-87617011 | MS.gene043248:intron | 40.0% | |
| GCGTGAATTTAAGAAGGAAG+GGG | - | chr7.2:87615594-87615613 | None:intergenic | 40.0% | |
| GCTGAACTCAGCAACAAAAT+TGG | + | chr7.2:87619034-87619053 | MS.gene043248:CDS | 40.0% | |
| GTAATACTGTCTTCATGGTG+TGG | - | chr7.2:87617640-87617659 | None:intergenic | 40.0% | |
| GTACACAAGCCAACTACAAA+AGG | - | chr7.2:87618406-87618425 | None:intergenic | 40.0% | |
| GTTAACCAAGTCCAGATTTG+TGG | - | chr7.2:87615812-87615831 | None:intergenic | 40.0% | |
| GTTACTAGATACAGCACGAT+AGG | - | chr7.2:87616830-87616849 | None:intergenic | 40.0% | |
| TAGAAGACGTATGTGTTAGG+CGG | + | chr7.2:87616995-87617014 | MS.gene043248:intron | 40.0% | |
| TATTGCTCTTCTCTTATGGG+AGG | - | chr7.2:87617963-87617982 | None:intergenic | 40.0% | |
| TGCAGTAGACTCATAATCAC+TGG | - | chr7.2:87616559-87616578 | None:intergenic | 40.0% | |
| TGTGGTTAAGGAAGTTACGT+TGG | - | chr7.2:87615864-87615883 | None:intergenic | 40.0% | |
| TTGAGAGTTAGAGTAGTTGC+AGG | - | chr7.2:87617056-87617075 | None:intergenic | 40.0% | |
| TTTCTTCATCAACGCTGTTC+TGG | - | chr7.2:87617305-87617324 | None:intergenic | 40.0% | |
| ! | CCATGCTTCATAGTTTGTGA+TGG | + | chr7.2:87616865-87616884 | MS.gene043248:intron | 40.0% |
| ! | CGTGTTGATGTGATAAGGTA+AGG | + | chr7.2:87615328-87615347 | MS.gene043248:intron | 40.0% |
| ! | GACAAGTTTATTTCTTCCCC+TGG | + | chr7.2:87618875-87618894 | MS.gene043248:CDS | 40.0% |
| ! | GATTGCATGTTGTAAGTTGG+AGG | + | chr7.2:87616432-87616451 | MS.gene043248:intron | 40.0% |
| ! | TCATAGTTTGTGATGGAGTG+TGG | + | chr7.2:87616872-87616891 | MS.gene043248:intron | 40.0% |
| ! | TGTAAGTTGGAGGGACTATA+TGG | + | chr7.2:87616442-87616461 | MS.gene043248:intron | 40.0% |
| !! | GTAAGAGAGCATTCTAAGGA+AGG | - | chr7.2:87617686-87617705 | None:intergenic | 40.0% |
| !! | TTGATGATGACCCAAATCAG+CGG | - | chr7.2:87619293-87619312 | None:intergenic | 40.0% |
| !! | TTTGGTCCAATGCTGTTTCA+GGG | + | chr7.2:87617532-87617551 | MS.gene043248:intron | 40.0% |
| !!! | CCATTGTTTTGACAACCTGT+TGG | - | chr7.2:87618919-87618938 | None:intergenic | 40.0% |
| !!! | GCATGCATGTTTTGGTTTTG+TGG | + | chr7.2:87616739-87616758 | MS.gene043248:intron | 40.0% |
| !!! | TTACGTTGGCCTTTTGTAGT+TGG | + | chr7.2:87618394-87618413 | MS.gene043248:intron | 40.0% |
| !!! | TTTTGGTCCAATGCTGTTTC+AGG | + | chr7.2:87617531-87617550 | MS.gene043248:intron | 40.0% |
| AAATCAGCTGTGACCGTAAC+GGG | + | chr7.2:87619133-87619152 | MS.gene043248:CDS | 45.0% | |
| AAGAAGCGACGAATCAAGAC+AGG | - | chr7.2:87618430-87618449 | None:intergenic | 45.0% | |
| ACATCATTCTCTGTCGCTCT+TGG | - | chr7.2:87615274-87615293 | None:intergenic | 45.0% | |
| ACCTATGATTGCCCCTGATT+GGG | + | chr7.2:87617267-87617286 | MS.gene043248:intron | 45.0% | |
| ACTCACTCTGACCATTCTCT+CGG | - | chr7.2:87616976-87616995 | None:intergenic | 45.0% | |
| AGGCAGAGTGGATGATGATA+TGG | + | chr7.2:87617179-87617198 | MS.gene043248:intron | 45.0% | |
| AGTTGGATGAGTATGTTGGC+AGG | + | chr7.2:87617023-87617042 | MS.gene043248:intron | 45.0% | |
| ATAGTTGCGGCAACAGTTAC+CGG | + | chr7.2:87619166-87619185 | MS.gene043248:CDS | 45.0% | |
| ATCATTCTCTGTCGCTCTTG+GGG | - | chr7.2:87615272-87615291 | None:intergenic | 45.0% | |
| ATTTCAGCAGTATAGCCACC+GGG | - | chr7.2:87615238-87615257 | None:intergenic | 45.0% | |
| CAAATCAGCTGTGACCGTAA+CGG | + | chr7.2:87619132-87619151 | MS.gene043248:CDS | 45.0% | |
| CATCATTCTCTGTCGCTCTT+GGG | - | chr7.2:87615273-87615292 | None:intergenic | 45.0% | |
| CCAGTTTCTGTATCTCCTAG+AGG | + | chr7.2:87617911-87617930 | MS.gene043248:intron | 45.0% | |
| CTCTCTACCATCATGGAAGA+AGG | - | chr7.2:87618536-87618555 | None:intergenic | 45.0% | |
| GAAGTCACTTAATCCTGACC+AGG | - | chr7.2:87617220-87617239 | None:intergenic | 45.0% | |
| GAGCAGTAATGCAGTTTCCA+GGG | - | chr7.2:87616607-87616626 | None:intergenic | 45.0% | |
| GATTTCAGCAGTATAGCCAC+CGG | - | chr7.2:87615239-87615258 | None:intergenic | 45.0% | |
| GCTGTGAACTAAAAGCCTCT+AGG | - | chr7.2:87617929-87617948 | None:intergenic | 45.0% | |
| GGTTGATTGCGTTCAGTAGA+TGG | - | chr7.2:87616038-87616057 | None:intergenic | 45.0% | |
| GTTGGATGAGTATGTTGGCA+GGG | + | chr7.2:87617024-87617043 | MS.gene043248:intron | 45.0% | |
| TATAGCTGTTGTCCCCGTTA+CGG | - | chr7.2:87619149-87619168 | None:intergenic | 45.0% | |
| TCTTCGACAGGATATGCACA+TGG | + | chr7.2:87618853-87618872 | MS.gene043248:intron | 45.0% | |
| TGAGCAGTAATGCAGTTTCC+AGG | - | chr7.2:87616608-87616627 | None:intergenic | 45.0% | |
| TGTGTTAGGCGGCATATAGT+TGG | + | chr7.2:87617006-87617025 | MS.gene043248:intron | 45.0% | |
| TTCGGACATGTTATCTCGTG+CGG | + | chr7.2:87619258-87619277 | MS.gene043248:CDS | 45.0% | |
| ! | CCTCTAGGAGATACAGAAAC+TGG | - | chr7.2:87617914-87617933 | None:intergenic | 45.0% |
| ! | GGGAAGCACAACCAAAACAT+AGG | - | chr7.2:87616809-87616828 | None:intergenic | 45.0% |
| !! | TTTTAGGGATGCTTATGCCC+TGG | + | chr7.2:87616587-87616606 | MS.gene043248:CDS | 45.0% |
| !!! | TTGGTTTTGAGTAGGCAGAG+TGG | + | chr7.2:87617167-87617186 | MS.gene043248:intron | 45.0% |
| AATCAGCTGTGACCGTAACG+GGG | + | chr7.2:87619134-87619153 | MS.gene043248:CDS | 50.0% | |
| ACCCAATCAGGGGCAATCAT+AGG | - | chr7.2:87617271-87617290 | None:intergenic | 50.0% | |
| AGAAGGAAGGGGCAATGTGA+AGG | - | chr7.2:87615583-87615602 | None:intergenic | 50.0% | |
| ATACTTCCCTAAGCGTACGG+AGG | - | chr7.2:87617242-87617261 | None:intergenic | 50.0% | |
| CAATCAGGGGCAATCATAGG+TGG | - | chr7.2:87617268-87617287 | None:intergenic | 50.0% | |
| CACCTATGATTGCCCCTGAT+TGG | + | chr7.2:87617266-87617285 | MS.gene043248:intron | 50.0% | |
| CATAGTCAGTGCTTCTCCAG+GGG | - | chr7.2:87618894-87618913 | None:intergenic | 50.0% | |
| CATTCTCAGGTGTGTGTGTG+TGG | - | chr7.2:87615508-87615527 | None:intergenic | 50.0% | |
| CCAAATGTGGACCGAGAGAA+TGG | + | chr7.2:87616962-87616981 | MS.gene043248:intron | 50.0% | |
| CCATAGTCAGTGCTTCTCCA+GGG | - | chr7.2:87618895-87618914 | None:intergenic | 50.0% | |
| CCATTCTCTCGGTCCACATT+TGG | - | chr7.2:87616965-87616984 | None:intergenic | 50.0% | |
| CGTTACGGTCACAGCTGATT+TGG | - | chr7.2:87619134-87619153 | None:intergenic | 50.0% | |
| GAAAGGAGCTCTCTGGGTTT+CGG | + | chr7.2:87619240-87619259 | MS.gene043248:CDS | 50.0% | |
| GGGGACAACAGCTATAGTTG+CGG | + | chr7.2:87619153-87619172 | MS.gene043248:CDS | 50.0% | |
| TAGTTGCGGCAACAGTTACC+GGG | + | chr7.2:87619167-87619186 | MS.gene043248:CDS | 50.0% | |
| TGACTTCCTCCGTACGCTTA+GGG | + | chr7.2:87617233-87617252 | MS.gene043248:intron | 50.0% | |
| TGATTGCGAATCACCTGGTC+AGG | + | chr7.2:87617204-87617223 | MS.gene043248:intron | 50.0% | |
| !! | CATCAACGCTGTTCTGGAGT+GGG | - | chr7.2:87617299-87617318 | None:intergenic | 50.0% |
| !! | GCGAAATCAGCCGCTGATTT+GGG | + | chr7.2:87619280-87619299 | MS.gene043248:CDS | 50.0% |
| !! | TCATCAACGCTGTTCTGGAG+TGG | - | chr7.2:87617300-87617319 | None:intergenic | 50.0% |
| ACTTCGCGAAAGGAGCTCTC+TGG | + | chr7.2:87619233-87619252 | MS.gene043248:CDS | 55.0% | |
| AGTGGGCCAAGACCCAATCA+GGG | - | chr7.2:87617282-87617301 | None:intergenic | 55.0% | |
| AGTTACCGGGAGAGCAGCTA+TGG | + | chr7.2:87619180-87619199 | MS.gene043248:CDS | 55.0% | |
| CTTCGCGAAAGGAGCTCTCT+GGG | + | chr7.2:87619234-87619253 | MS.gene043248:CDS | 55.0% | |
| GATTGCCCCTGATTGGGTCT+TGG | + | chr7.2:87617273-87617292 | MS.gene043248:intron | 55.0% | |
| GCCATAGTCAGTGCTTCTCC+AGG | - | chr7.2:87618896-87618915 | None:intergenic | 55.0% | |
| GGATGAGTATGTTGGCAGGG+TGG | + | chr7.2:87617027-87617046 | MS.gene043248:intron | 55.0% | |
| GTGACTTCCTCCGTACGCTT+AGG | + | chr7.2:87617232-87617251 | MS.gene043248:intron | 55.0% | |
| TGGCGTGATTGCGAATCACC+TGG | + | chr7.2:87617199-87617218 | MS.gene043248:intron | 55.0% | |
| ! | GGCGAAATCAGCCGCTGATT+TGG | + | chr7.2:87619279-87619298 | MS.gene043248:CDS | 55.0% |
| !! | AGCACTGACTATGGCCCAAC+AGG | + | chr7.2:87618901-87618920 | MS.gene043248:CDS | 55.0% |
| !! | CCCTGGAGAAGCACTGACTA+TGG | + | chr7.2:87618892-87618911 | MS.gene043248:CDS | 55.0% |
| AGCAGCCATAGCTGCTCTCC+CGG | - | chr7.2:87619188-87619207 | None:intergenic | 60.0% | |
| GAGTGGGCCAAGACCCAATC+AGG | - | chr7.2:87617283-87617302 | None:intergenic | 60.0% | |
| GTGGGCCAAGACCCAATCAG+GGG | - | chr7.2:87617281-87617300 | None:intergenic | 60.0% | |
| GGGAGAGCAGCTATGGCTGC+TGG | + | chr7.2:87619187-87619206 | MS.gene043248:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 87615229 | 87619321 | 87615229 | ID=MS.gene043248 |
| chr7.2 | mRNA | 87615229 | 87619321 | 87615229 | ID=MS.gene043248.t1;Parent=MS.gene043248 |
| chr7.2 | exon | 87615229 | 87615344 | 87615229 | ID=MS.gene043248.t1.exon1;Parent=MS.gene043248.t1 |
| chr7.2 | CDS | 87615229 | 87615344 | 87615229 | ID=cds.MS.gene043248.t1;Parent=MS.gene043248.t1 |
| chr7.2 | exon | 87616554 | 87616629 | 87616554 | ID=MS.gene043248.t1.exon2;Parent=MS.gene043248.t1 |
| chr7.2 | CDS | 87616554 | 87616629 | 87616554 | ID=cds.MS.gene043248.t1;Parent=MS.gene043248.t1 |
| chr7.2 | exon | 87617553 | 87617669 | 87617553 | ID=MS.gene043248.t1.exon3;Parent=MS.gene043248.t1 |
| chr7.2 | CDS | 87617553 | 87617669 | 87617553 | ID=cds.MS.gene043248.t1;Parent=MS.gene043248.t1 |
| chr7.2 | exon | 87618863 | 87619321 | 87618863 | ID=MS.gene043248.t1.exon4;Parent=MS.gene043248.t1 |
| chr7.2 | CDS | 87618863 | 87619321 | 87618863 | ID=cds.MS.gene043248.t1;Parent=MS.gene043248.t1 |
| Gene Sequence |
| Protein sequence |
