Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021689.t1 | XP_003621177.1 | 92.5 | 254 | 19 | 0 | 32 | 285 | 1 | 254 | 6.80E-107 | 397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021689.t1 | Q9LFD5 | 29.9 | 201 | 116 | 3 | 38 | 234 | 7 | 186 | 8.9e-15 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021689.t1 | G7KZY3 | 92.5 | 254 | 19 | 0 | 32 | 285 | 1 | 254 | 4.9e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62658 | MS.gene021689 | PPI |
| MS.gene021689 | MS.gene026496 | PPI |
| MS.gene021689 | MS.gene95850 | PPI |
| MS.gene058565 | MS.gene021689 | PPI |
| MS.gene015621 | MS.gene021689 | PPI |
| MS.gene021689 | MS.gene83025 | PPI |
| MS.gene040929 | MS.gene021689 | PPI |
| MS.gene95329 | MS.gene021689 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021689.t1 | MTR_7g010100 | 94.882 | 254 | 13 | 0 | 32 | 285 | 1 | 254 | 2.25e-173 | 479 |
| MS.gene021689.t1 | MTR_5g039130 | 50.400 | 250 | 109 | 4 | 36 | 282 | 7 | 244 | 2.36e-82 | 248 |
| MS.gene021689.t1 | MTR_1g032860 | 33.865 | 251 | 125 | 4 | 38 | 280 | 33 | 250 | 1.06e-38 | 138 |
| MS.gene021689.t1 | MTR_7g086080 | 35.366 | 246 | 139 | 6 | 38 | 276 | 5 | 237 | 1.06e-38 | 137 |
| MS.gene021689.t1 | MTR_8g066460 | 33.333 | 255 | 132 | 5 | 38 | 283 | 5 | 230 | 2.07e-34 | 126 |
| MS.gene021689.t1 | MTR_8g066460 | 33.333 | 255 | 132 | 5 | 38 | 283 | 21 | 246 | 2.07e-34 | 126 |
| MS.gene021689.t1 | MTR_8g105910 | 33.198 | 247 | 133 | 5 | 38 | 280 | 33 | 251 | 7.98e-34 | 125 |
| MS.gene021689.t1 | MTR_5g029640 | 34.375 | 256 | 128 | 7 | 38 | 283 | 5 | 230 | 7.86e-32 | 123 |
| MS.gene021689.t1 | MTR_5g029640 | 36.364 | 143 | 75 | 4 | 145 | 283 | 272 | 402 | 3.88e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021689.t1 | AT3G01210 | 53.516 | 256 | 111 | 3 | 32 | 286 | 1 | 249 | 1.16e-72 | 224 |
| MS.gene021689.t1 | AT3G01210 | 53.516 | 256 | 111 | 3 | 32 | 286 | 1 | 249 | 1.16e-72 | 224 |
| MS.gene021689.t1 | AT1G14340 | 45.528 | 246 | 121 | 2 | 36 | 281 | 6 | 238 | 1.02e-64 | 203 |
| MS.gene021689.t1 | AT5G46870 | 33.465 | 254 | 139 | 6 | 38 | 283 | 5 | 236 | 1.45e-36 | 132 |
| MS.gene021689.t1 | AT5G46870 | 33.465 | 254 | 139 | 6 | 38 | 283 | 5 | 236 | 1.45e-36 | 132 |
| MS.gene021689.t1 | AT5G16840 | 34.137 | 249 | 129 | 7 | 38 | 282 | 7 | 224 | 2.05e-36 | 130 |
| MS.gene021689.t1 | AT5G32450 | 34.413 | 247 | 139 | 5 | 38 | 275 | 6 | 238 | 3.07e-36 | 130 |
| MS.gene021689.t1 | AT5G16840 | 33.333 | 249 | 130 | 7 | 38 | 282 | 7 | 223 | 1.17e-35 | 129 |
| MS.gene021689.t1 | AT4G17720 | 32.685 | 257 | 133 | 5 | 38 | 283 | 5 | 232 | 1.22e-35 | 130 |
| MS.gene021689.t1 | AT5G16840 | 33.333 | 249 | 130 | 7 | 38 | 282 | 5 | 221 | 1.43e-35 | 128 |
| MS.gene021689.t1 | AT1G67950 | 32.800 | 250 | 134 | 6 | 35 | 279 | 28 | 248 | 3.05e-30 | 115 |
| MS.gene021689.t1 | AT1G67950 | 32.800 | 250 | 134 | 6 | 35 | 279 | 27 | 247 | 4.93e-30 | 114 |
| MS.gene021689.t1 | AT1G67950 | 32.800 | 250 | 135 | 7 | 35 | 279 | 27 | 248 | 6.89e-30 | 114 |
| MS.gene021689.t1 | AT1G67950 | 33.333 | 213 | 109 | 5 | 69 | 276 | 1 | 185 | 2.67e-24 | 98.2 |
Find 57 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAATGCCTGAATTTA+TGG | 0.074898 | 7.4:-89192108 | None:intergenic |
| GTCTCAGGGATCGATGATTT+TGG | 0.256279 | 7.4:+89190954 | MS.gene021689:intron |
| GCTGAACTCAGCAACAAAAT+TGG | 0.265972 | 7.4:+89192074 | MS.gene021689:CDS |
| TTCGGATACTGATAGTTAAA+AGG | 0.272121 | 7.4:-89188610 | None:intergenic |
| CATCATTCTCTGTCGCTCTT+GGG | 0.292251 | 7.4:-89188837 | None:intergenic |
| GGCGAAATCAGCCGCTGATT+TGG | 0.309158 | 7.4:+89192319 | MS.gene021689:CDS |
| GTTATACTGTCTTCATGGTT+TGG | 0.321389 | 7.4:-89191045 | None:intergenic |
| ACTTCGCGAAAGGAGCTCTT+TGG | 0.322549 | 7.4:+89192273 | MS.gene021689:CDS |
| ATAGTTGCGGCAACAGTTAC+TGG | 0.329391 | 7.4:+89192206 | MS.gene021689:CDS |
| GAAAGGAGCTCTTTGGGTTT+CGG | 0.346069 | 7.4:+89192280 | MS.gene021689:CDS |
| AAATCAGCTGTGACCGTAAC+GGG | 0.347381 | 7.4:+89192173 | MS.gene021689:CDS |
| ACATCATTCTCTGTCGCTCT+TGG | 0.356464 | 7.4:-89188838 | None:intergenic |
| CGTTACGGTCACAGCTGATT+TGG | 0.364880 | 7.4:-89192171 | None:intergenic |
| GCGAAATCAGCCGCTGATTT+GGG | 0.367461 | 7.4:+89192320 | MS.gene021689:CDS |
| TCAGCAATAATGCAGTTTCC+AGG | 0.367505 | 7.4:-89189993 | None:intergenic |
| TTGACTGAAACCATAAATTC+AGG | 0.369568 | 7.4:+89192098 | MS.gene021689:CDS |
| CTTCGCGAAAGGAGCTCTTT+GGG | 0.373138 | 7.4:+89192274 | MS.gene021689:CDS |
| ATACAGATGACAGCAATAAC+TGG | 0.385974 | 7.4:+89191010 | MS.gene021689:CDS |
| CCCTGGAGAAGCACTGACTA+TGG | 0.407984 | 7.4:+89191932 | MS.gene021689:CDS |
| CTCACAGATGGAGCAATCAT+AGG | 0.426596 | 7.4:+89188571 | MS.gene021689:CDS |
| AGTATGTTATACTGTCTTCA+TGG | 0.433173 | 7.4:-89191050 | None:intergenic |
| GCCATAGTCAGTGCTTCTCC+AGG | 0.433235 | 7.4:-89191933 | None:intergenic |
| AGCACTGACTATGGCCCAAC+AGG | 0.435623 | 7.4:+89191941 | MS.gene021689:CDS |
| GACAAGTTTATTTCTTCCCC+TGG | 0.448188 | 7.4:+89191915 | MS.gene021689:CDS |
| GTCAAAACAATGGTAGCTAA+AGG | 0.506039 | 7.4:+89191966 | MS.gene021689:CDS |
| ATGCATTTCTATTTCACGCT+GGG | 0.512664 | 7.4:+89190981 | MS.gene021689:CDS |
| ATCATTCTCTGTCGCTCTTG+GGG | 0.518956 | 7.4:-89188836 | None:intergenic |
| CATTGAAAGATTTAAATATG+TGG | 0.523394 | 7.4:+89192121 | MS.gene021689:CDS |
| TATAGCTGTTGTCCCCGTTA+CGG | 0.523895 | 7.4:-89192186 | None:intergenic |
| TGCAGTAGACTCATAATCAC+TGG | 0.524529 | 7.4:-89189944 | None:intergenic |
| AGTTACTGGGAGAGCAGCTA+TGG | 0.528793 | 7.4:+89192220 | MS.gene021689:CDS |
| TTTCGCGAAGTAGCTGCTAC+TGG | 0.543753 | 7.4:-89192261 | None:intergenic |
| TCACAGATGGAGCAATCATA+GGG | 0.548061 | 7.4:+89188572 | MS.gene021689:CDS |
| AGTAGCAGCTACTTCGCGAA+AGG | 0.561199 | 7.4:+89192263 | MS.gene021689:CDS |
| ATCATCTACAGCAGCAAACA+AGG | 0.563010 | 7.4:+89192049 | MS.gene021689:CDS |
| CAGCAATAATGCAGTTTCCA+GGG | 0.565158 | 7.4:-89189992 | None:intergenic |
| TTGAACGTGTTGATGTGATA+AGG | 0.565626 | 7.4:+89188890 | MS.gene021689:CDS |
| GGGAGAGCAGCTATGGCTGC+TGG | 0.571991 | 7.4:+89192227 | MS.gene021689:CDS |
| CAGTTAACAAATATGTATCC+CGG | 0.572446 | 7.4:+89188784 | MS.gene021689:CDS |
| AGCGTGAAATAGAAATGCAT+TGG | 0.573031 | 7.4:-89190978 | None:intergenic |
| GATTTCAGCAGTATAGCCAC+CGG | 0.578842 | 7.4:-89188803 | None:intergenic |
| ACAATGCACCGTCTCACAGA+TGG | 0.583449 | 7.4:+89188559 | None:intergenic |
| CCATAGTCAGTGCTTCTCCA+GGG | 0.584544 | 7.4:-89191932 | None:intergenic |
| TAGTTGCGGCAACAGTTACT+GGG | 0.586425 | 7.4:+89192207 | MS.gene021689:CDS |
| CAAATCAGCTGTGACCGTAA+CGG | 0.593214 | 7.4:+89192172 | MS.gene021689:CDS |
| TTCGGATATGTTATCTCGTG+CGG | 0.601464 | 7.4:+89192298 | MS.gene021689:CDS |
| AATGCATTTCTATTTCACGC+TGG | 0.619462 | 7.4:+89190980 | MS.gene021689:CDS |
| CATAGTCAGTGCTTCTCCAG+GGG | 0.633935 | 7.4:-89191931 | None:intergenic |
| GAGCAAAGATGCATTTGTGA+TGG | 0.651958 | 7.4:+89191998 | MS.gene021689:CDS |
| TGATTGCTCCATCTGTGAGA+CGG | 0.651969 | 7.4:-89188567 | None:intergenic |
| CCAACAGGTTGTCAAAACAA+TGG | 0.652844 | 7.4:+89191956 | MS.gene021689:CDS |
| TCTTCGACAGGATATGCACA+TGG | 0.669039 | 7.4:+89191893 | MS.gene021689:intron |
| ATTTCAGCAGTATAGCCACC+GGG | 0.672279 | 7.4:-89188802 | None:intergenic |
| AATCAGCTGTGACCGTAACG+GGG | 0.690827 | 7.4:+89192174 | MS.gene021689:CDS |
| TTGATGATGACCCAAATCAG+CGG | 0.695347 | 7.4:-89192330 | None:intergenic |
| GGGGACAACAGCTATAGTTG+CGG | 0.707278 | 7.4:+89192193 | MS.gene021689:CDS |
| TTAACAAATATGTATCCCGG+TGG | 0.755255 | 7.4:+89188787 | MS.gene021689:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATGAAATTTAATTAAC+AGG | - | chr7.4:89191778-89191797 | None:intergenic | 15.0% |
| !! | CTGTTAATTAAATTTCATAA+TGG | + | chr7.4:89191776-89191795 | MS.gene021689:intron | 15.0% |
| !!! | AAATTTATGTTTTGGAAAAT+TGG | + | chr7.4:89191277-89191296 | MS.gene021689:intron | 15.0% |
| !!! | CTCTAAAGTATTTAATATTA+TGG | - | chr7.4:89191526-89191545 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTAATAATGATAC+AGG | + | chr7.4:89189920-89189939 | MS.gene021689:intron | 15.0% |
| !! | ATAATTCAATGTTCAGAATA+AGG | + | chr7.4:89191253-89191272 | MS.gene021689:intron | 20.0% |
| !! | ATCAAGTCAATATATAAATG+AGG | + | chr7.4:89190474-89190493 | MS.gene021689:intron | 20.0% |
| !! | ATCTATTAACAAAATACAGT+CGG | - | chr7.4:89190736-89190755 | None:intergenic | 20.0% |
| !! | CATTGAAAGATTTAAATATG+TGG | + | chr7.4:89192121-89192140 | MS.gene021689:CDS | 20.0% |
| !! | GACAAAGTTTAATAATTACA+GGG | + | chr7.4:89189715-89189734 | MS.gene021689:intron | 20.0% |
| !! | TAATTCAATGTTCAGAATAA+GGG | + | chr7.4:89191254-89191273 | MS.gene021689:intron | 20.0% |
| !! | TGACAAAGTTTAATAATTAC+AGG | + | chr7.4:89189714-89189733 | MS.gene021689:intron | 20.0% |
| !!! | AATAAGGGAAATTTATGTTT+TGG | + | chr7.4:89191269-89191288 | MS.gene021689:intron | 20.0% |
| !!! | AATTCAATTCATCTTGATTT+TGG | + | chr7.4:89190922-89190941 | MS.gene021689:intron | 20.0% |
| !!! | ATAGTTTTTGAATTTGTTTC+TGG | + | chr7.4:89189033-89189052 | MS.gene021689:intron | 20.0% |
| !!! | GTCTTTTTTCTTTACATTTT+CGG | + | chr7.4:89191126-89191145 | MS.gene021689:intron | 20.0% |
| !!! | TCAAATAACTTTAATTTCTG+TGG | - | chr7.4:89191231-89191250 | None:intergenic | 20.0% |
| !!! | TCATTTATATATTGACTTGA+TGG | - | chr7.4:89190475-89190494 | None:intergenic | 20.0% |
| !!! | TCTATAAAGCATAAAAGTTT+TGG | + | chr7.4:89190128-89190147 | MS.gene021689:intron | 20.0% |
| !!! | TGTTACTTAACATTGTTTAT+TGG | + | chr7.4:89188916-89188935 | MS.gene021689:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr7.4:89191388-89191407 | MS.gene021689:intron | 20.0% |
| !!! | TTCAAAATCTATTTTTACGT+TGG | + | chr7.4:89191424-89191443 | MS.gene021689:intron | 20.0% |
| ! | AAATGATCTTTACCACTATT+AGG | - | chr7.4:89189598-89189617 | None:intergenic | 25.0% |
| ! | AAATTTAATTAACAGGCCTA+AGG | - | chr7.4:89191771-89191790 | None:intergenic | 25.0% |
| ! | ATATGGTTAATAGATATACC+AGG | - | chr7.4:89189368-89189387 | None:intergenic | 25.0% |
| ! | ATCCATTGTAGAGTTATATT+TGG | - | chr7.4:89190814-89190833 | None:intergenic | 25.0% |
| ! | GGCTACAAAAATTACATTAA+GGG | + | chr7.4:89189326-89189345 | MS.gene021689:intron | 25.0% |
| ! | TAATGAAACACCTGAAATTA+TGG | - | chr7.4:89189256-89189275 | None:intergenic | 25.0% |
| ! | TCGGATATATTCATAAATCA+TGG | + | chr7.4:89191145-89191164 | MS.gene021689:intron | 25.0% |
| ! | TGGCTACAAAAATTACATTA+AGG | + | chr7.4:89189325-89189344 | MS.gene021689:intron | 25.0% |
| ! | TTCAACAGAGATATGAAATA+TGG | - | chr7.4:89189790-89189809 | None:intergenic | 25.0% |
| ! | TTCCAAATATAACTCTACAA+TGG | + | chr7.4:89190809-89190828 | MS.gene021689:intron | 25.0% |
| !! | AAGGAACATTAATGTTACTT+CGG | - | chr7.4:89188631-89188650 | None:intergenic | 25.0% |
| !! | AATTTTTGTAGCCATGAATT+TGG | - | chr7.4:89189319-89189338 | None:intergenic | 25.0% |
| !! | AGTCAAAATGAAACTTTTTG+TGG | + | chr7.4:89188952-89188971 | MS.gene021689:intron | 25.0% |
| !! | ATTGTTGCTTAGATAGTTAA+TGG | + | chr7.4:89189078-89189097 | MS.gene021689:intron | 25.0% |
| !! | GTTGAAATAAGTTGACAAAT+AGG | - | chr7.4:89191865-89191884 | None:intergenic | 25.0% |
| !! | TCTGGTTTATGATTACATAT+TGG | + | chr7.4:89189051-89189070 | MS.gene021689:intron | 25.0% |
| !! | TGTATTATTTCTCCTAATAG+TGG | + | chr7.4:89189583-89189602 | MS.gene021689:intron | 25.0% |
| !!! | AATGATGTGCACAATTTTTT+TGG | + | chr7.4:89188853-89188872 | MS.gene021689:CDS | 25.0% |
| AACATGATATGAACCAAAAG+AGG | - | chr7.4:89188664-89188683 | None:intergenic | 30.0% | |
| AACTAACAGTTCTACCATAT+AGG | - | chr7.4:89189851-89189870 | None:intergenic | 30.0% | |
| AACTTCATTAACCACAAATG+TGG | + | chr7.4:89189137-89189156 | MS.gene021689:intron | 30.0% | |
| AACTTCATTAACCACAACTT+TGG | + | chr7.4:89189220-89189239 | MS.gene021689:intron | 30.0% | |
| ACATGATATGAACCAAAAGA+GGG | - | chr7.4:89188663-89188682 | None:intergenic | 30.0% | |
| ACATGGATAACCATAATTTC+AGG | + | chr7.4:89189243-89189262 | MS.gene021689:intron | 30.0% | |
| ACTCTTGAGTTTAATGTCAA+AGG | + | chr7.4:89188984-89189003 | MS.gene021689:intron | 30.0% | |
| AGAGATATGAAATATGGTCA+AGG | - | chr7.4:89189784-89189803 | None:intergenic | 30.0% | |
| AGATGACAAAGAAACCTTAT+GGG | + | chr7.4:89191673-89191692 | MS.gene021689:intron | 30.0% | |
| AGTATGTTATACTGTCTTCA+TGG | - | chr7.4:89191053-89191072 | None:intergenic | 30.0% | |
| ATAATGATAGACAGCTTCAT+TGG | + | chr7.4:89190776-89190795 | MS.gene021689:intron | 30.0% | |
| ATATAGTTGCATGAGTATGT+TGG | + | chr7.4:89190422-89190441 | MS.gene021689:intron | 30.0% | |
| ATTGAAAGTTGACAAGAACA+AGG | - | chr7.4:89190079-89190098 | None:intergenic | 30.0% | |
| ATTTGAACACCTGAAAATTG+TGG | + | chr7.4:89189283-89189302 | MS.gene021689:intron | 30.0% | |
| CAAGATGAATTGAATTGAAC+AGG | - | chr7.4:89190918-89190937 | None:intergenic | 30.0% | |
| CAGTTAACAAATATGTATCC+CGG | + | chr7.4:89188784-89188803 | MS.gene021689:CDS | 30.0% | |
| CATGTTGTAACTTTGTAAGT+TGG | + | chr7.4:89189821-89189840 | MS.gene021689:intron | 30.0% | |
| CGATCGTTATTAACAGTTAT+AGG | + | chr7.4:89191720-89191739 | MS.gene021689:intron | 30.0% | |
| GTATAACATACTCACAAGTA+TGG | + | chr7.4:89191061-89191080 | MS.gene021689:intron | 30.0% | |
| GTTAACGAAGTTCAAATAAG+TGG | - | chr7.4:89189406-89189425 | None:intergenic | 30.0% | |
| GTTTATGACATCCAAATTCA+TGG | + | chr7.4:89189305-89189324 | MS.gene021689:intron | 30.0% | |
| TAATGATAGACAGCTTCATT+GGG | + | chr7.4:89190777-89190796 | MS.gene021689:intron | 30.0% | |
| TAGTATATGTGAAGAGTTCT+TGG | + | chr7.4:89189878-89189897 | MS.gene021689:intron | 30.0% | |
| TATTAATGAGTTTCAACACC+TGG | - | chr7.4:89189109-89189128 | None:intergenic | 30.0% | |
| TCTTTCAATGCCTGAATTTA+TGG | - | chr7.4:89192111-89192130 | None:intergenic | 30.0% | |
| TGTAAGGTTAGATTGTGATT+AGG | - | chr7.4:89191619-89191638 | None:intergenic | 30.0% | |
| TTACTTGCTTTGCTTTATGT+TGG | + | chr7.4:89188717-89188736 | MS.gene021689:intron | 30.0% | |
| TTCGGATACTGATAGTTAAA+AGG | - | chr7.4:89188613-89188632 | None:intergenic | 30.0% | |
| TTGACTGAAACCATAAATTC+AGG | + | chr7.4:89192098-89192117 | MS.gene021689:CDS | 30.0% | |
| TTGTATGCAGTTCAAATATG+TGG | - | chr7.4:89189196-89189215 | None:intergenic | 30.0% | |
| ! | AAATGAAACTTTTTGTGGCT+AGG | + | chr7.4:89188957-89188976 | MS.gene021689:intron | 30.0% |
| ! | TACTGCATATGTGACTTTTA+GGG | + | chr7.4:89189960-89189979 | MS.gene021689:CDS | 30.0% |
| ! | TGTCATAAACCACAATTTTC+AGG | - | chr7.4:89189295-89189314 | None:intergenic | 30.0% |
| ! | TTGTAACTTTGTAAGTTGGA+GGG | + | chr7.4:89189825-89189844 | MS.gene021689:intron | 30.0% |
| ! | TTTATGTTGGTTGTTGAATC+TGG | + | chr7.4:89188730-89188749 | MS.gene021689:intron | 30.0% |
| !! | ACAATTGACTAAGCCTTATT+TGG | - | chr7.4:89191404-89191423 | None:intergenic | 30.0% |
| !! | ATAAGTAAGAGAGCATTCTA+AGG | - | chr7.4:89191098-89191117 | None:intergenic | 30.0% |
| !!! | CACAATTTTTTTGGATACTG+TGG | + | chr7.4:89188862-89188881 | MS.gene021689:CDS | 30.0% |
| !!! | CATAAAAGTTTTGGTGTTGT+GGG | + | chr7.4:89190137-89190156 | MS.gene021689:intron | 30.0% |
| !!! | TTTACTTTTTGATCCAAACG+TGG | + | chr7.4:89190349-89190368 | MS.gene021689:intron | 30.0% |
| AAACATACCTTCTTCCATGA+TGG | + | chr7.4:89191570-89191589 | MS.gene021689:intron | 35.0% | |
| AATGCATTTCTATTTCACGC+TGG | + | chr7.4:89190980-89190999 | MS.gene021689:CDS | 35.0% | |
| ACTTCTGACACTAAATCCTT+AGG | + | chr7.4:89191752-89191771 | MS.gene021689:intron | 35.0% | |
| AGCGTGAAATAGAAATGCAT+TGG | - | chr7.4:89190981-89191000 | None:intergenic | 35.0% | |
| ATACAGATGACAGCAATAAC+TGG | + | chr7.4:89191010-89191029 | MS.gene021689:CDS | 35.0% | |
| ATCACAAACTGTATGTACCA+TGG | - | chr7.4:89190265-89190284 | None:intergenic | 35.0% | |
| ATGACTTTATCTCTCCCATA+AGG | - | chr7.4:89191690-89191709 | None:intergenic | 35.0% | |
| ATGCATTTCTATTTCACGCT+GGG | + | chr7.4:89190981-89191000 | MS.gene021689:CDS | 35.0% | |
| ATTAACCACAAATGTGGACT+TGG | + | chr7.4:89189143-89189162 | MS.gene021689:intron | 35.0% | |
| ATTAACCACAACTTTGGACA+TGG | + | chr7.4:89189226-89189245 | MS.gene021689:intron | 35.0% | |
| CAGATGACAAAGAAACCTTA+TGG | + | chr7.4:89191672-89191691 | MS.gene021689:intron | 35.0% | |
| CTGCATTATTGCTGAATGTA+AGG | + | chr7.4:89190001-89190020 | MS.gene021689:intron | 35.0% | |
| GTAACATTAATGTTCCTTGC+AGG | + | chr7.4:89188633-89188652 | MS.gene021689:intron | 35.0% | |
| GTCAAAACAATGGTAGCTAA+AGG | + | chr7.4:89191966-89191985 | MS.gene021689:CDS | 35.0% | |
| GTCATCTTTGTTGGATATCA+TGG | + | chr7.4:89190029-89190048 | MS.gene021689:intron | 35.0% | |
| GTTATACTGTCTTCATGGTT+TGG | - | chr7.4:89191048-89191067 | None:intergenic | 35.0% | |
| TGAGAAAGAACGAACATGTA+AGG | - | chr7.4:89191635-89191654 | None:intergenic | 35.0% | |
| TGTCATCTGTCATCAATAAC+AGG | - | chr7.4:89191661-89191680 | None:intergenic | 35.0% | |
| TTAACAAATATGTATCCCGG+TGG | + | chr7.4:89188787-89188806 | MS.gene021689:CDS | 35.0% | |
| TTGGAAAGTCATAAATCTCC+AGG | + | chr7.4:89191296-89191315 | MS.gene021689:intron | 35.0% | |
| ! | AAGGCTTTTGTCATCTTTGT+TGG | + | chr7.4:89190020-89190039 | MS.gene021689:intron | 35.0% |
| ! | AGATAGTTAATGGATACACC+AGG | + | chr7.4:89189088-89189107 | MS.gene021689:intron | 35.0% |
| ! | CTACTGCATATGTGACTTTT+AGG | + | chr7.4:89189959-89189978 | MS.gene021689:CDS | 35.0% |
| ! | CTGATTGAAGATTCTGAAGA+TGG | - | chr7.4:89188767-89188786 | None:intergenic | 35.0% |
| ! | GTTGTAACTTTGTAAGTTGG+AGG | + | chr7.4:89189824-89189843 | MS.gene021689:intron | 35.0% |
| ! | TTGAACGTGTTGATGTGATA+AGG | + | chr7.4:89188890-89188909 | MS.gene021689:CDS | 35.0% |
| !! | CTACTTTTCATAAGCTATCC+TGG | - | chr7.4:89191317-89191336 | None:intergenic | 35.0% |
| !! | TTTTTAGCCAGAAATACCGT+TGG | + | chr7.4:89190556-89190575 | MS.gene021689:intron | 35.0% |
| !!! | AAATACCGTTGGTTTTGAGT+AGG | + | chr7.4:89190567-89190586 | MS.gene021689:intron | 35.0% |
| !!! | CAACATGTTTTTTCTTCGAC+AGG | + | chr7.4:89191881-89191900 | MS.gene021689:intron | 35.0% |
| !!! | CATTGTTTTGACAACCTGTT+GGG | - | chr7.4:89191958-89191977 | None:intergenic | 35.0% |
| !!! | GCATAAAAGTTTTGGTGTTG+TGG | + | chr7.4:89190136-89190155 | MS.gene021689:intron | 35.0% |
| !!! | TAAACACGTAGCTTTTTCAG+AGG | + | chr7.4:89190515-89190534 | MS.gene021689:intron | 35.0% |
| ACAGTGAAGCTAAGATAAGC+TGG | - | chr7.4:89189496-89189515 | None:intergenic | 40.0% | |
| ACTTCTACTCTCTACCATCA+TGG | - | chr7.4:89191587-89191606 | None:intergenic | 40.0% | |
| AGGCAAAGTGGATGATGATT+TGG | + | chr7.4:89190587-89190606 | MS.gene021689:intron | 40.0% | |
| AGTTGCATGAGTATGTTGGT+AGG | + | chr7.4:89190426-89190445 | MS.gene021689:intron | 40.0% | |
| ATCATCTACAGCAGCAAACA+AGG | + | chr7.4:89192049-89192068 | MS.gene021689:CDS | 40.0% | |
| CAGCAATAATGCAGTTTCCA+GGG | - | chr7.4:89189995-89190014 | None:intergenic | 40.0% | |
| CCAACAGGTTGTCAAAACAA+TGG | + | chr7.4:89191956-89191975 | MS.gene021689:CDS | 40.0% | |
| CTCAAAACCAACGGTATTTC+TGG | - | chr7.4:89190566-89190585 | None:intergenic | 40.0% | |
| CTTTGCCTACTCAAAACCAA+CGG | - | chr7.4:89190575-89190594 | None:intergenic | 40.0% | |
| GAGCAAAGATGCATTTGTGA+TGG | + | chr7.4:89191998-89192017 | MS.gene021689:CDS | 40.0% | |
| GCATGTCTATTTCAATGCCA+TGG | + | chr7.4:89190245-89190264 | MS.gene021689:intron | 40.0% | |
| GCTGAACTCAGCAACAAAAT+TGG | + | chr7.4:89192074-89192093 | MS.gene021689:CDS | 40.0% | |
| GGTTGATTGCGTTCAGTATA+TGG | - | chr7.4:89189385-89189404 | None:intergenic | 40.0% | |
| GTACACAAGCCAACTACAAA+AGG | - | chr7.4:89191450-89191469 | None:intergenic | 40.0% | |
| GTTAACCAAGTCCACATTTG+TGG | - | chr7.4:89189151-89189170 | None:intergenic | 40.0% | |
| GTTATCCATGTCCAAAGTTG+TGG | - | chr7.4:89189234-89189253 | None:intergenic | 40.0% | |
| GTTGCATGAGTATGTTGGTA+GGG | + | chr7.4:89190427-89190446 | MS.gene021689:intron | 40.0% | |
| TCACAGATGGAGCAATCATA+GGG | + | chr7.4:89188572-89188591 | MS.gene021689:CDS | 40.0% | |
| TCAGCAATAATGCAGTTTCC+AGG | - | chr7.4:89189996-89190015 | None:intergenic | 40.0% | |
| TGCAGTAGACTCATAATCAC+TGG | - | chr7.4:89189947-89189966 | None:intergenic | 40.0% | |
| TTCGGATATGTTATCTCGTG+CGG | + | chr7.4:89192298-89192317 | MS.gene021689:CDS | 40.0% | |
| TTTCTTCATCAACGCTGTTC+TGG | - | chr7.4:89190713-89190732 | None:intergenic | 40.0% | |
| ! | GACAAGTTTATTTCTTCCCC+TGG | + | chr7.4:89191915-89191934 | MS.gene021689:CDS | 40.0% |
| !! | GTAAGAGAGCATTCTAAGGA+AGG | - | chr7.4:89191094-89191113 | None:intergenic | 40.0% |
| !! | TTGATGATGACCCAAATCAG+CGG | - | chr7.4:89192333-89192352 | None:intergenic | 40.0% |
| !!! | CCATTGTTTTGACAACCTGT+TGG | - | chr7.4:89191959-89191978 | None:intergenic | 40.0% |
| !!! | TTACGTTGGCCTTTTGTAGT+TGG | + | chr7.4:89191438-89191457 | MS.gene021689:intron | 40.0% |
| !!! | TTGGTTTTGAGTAGGCAAAG+TGG | + | chr7.4:89190575-89190594 | MS.gene021689:intron | 40.0% |
| AAATCAGCTGTGACCGTAAC+GGG | + | chr7.4:89192173-89192192 | MS.gene021689:CDS | 45.0% | |
| AAGAAGCGACGAATCAAGAC+AGG | - | chr7.4:89191474-89191493 | None:intergenic | 45.0% | |
| ACATCATTCTCTGTCGCTCT+TGG | - | chr7.4:89188841-89188860 | None:intergenic | 45.0% | |
| ACCTATGATTGCCCCTGATT+GGG | + | chr7.4:89190675-89190694 | MS.gene021689:intron | 45.0% | |
| ATACTTCCCTAAGCGTACAG+CGG | - | chr7.4:89190650-89190669 | None:intergenic | 45.0% | |
| ATAGTTGCGGCAACAGTTAC+TGG | + | chr7.4:89192206-89192225 | MS.gene021689:CDS | 45.0% | |
| ATCATTCTCTGTCGCTCTTG+GGG | - | chr7.4:89188839-89188858 | None:intergenic | 45.0% | |
| ATTTCAGCAGTATAGCCACC+GGG | - | chr7.4:89188805-89188824 | None:intergenic | 45.0% | |
| CAAATCAGCTGTGACCGTAA+CGG | + | chr7.4:89192172-89192191 | MS.gene021689:CDS | 45.0% | |
| CATCATTCTCTGTCGCTCTT+GGG | - | chr7.4:89188840-89188859 | None:intergenic | 45.0% | |
| CGACTTGATACAACACGACA+TGG | - | chr7.4:89190226-89190245 | None:intergenic | 45.0% | |
| CTCACAGATGGAGCAATCAT+AGG | + | chr7.4:89188571-89188590 | MS.gene021689:CDS | 45.0% | |
| CTCTCTACCATCATGGAAGA+AGG | - | chr7.4:89191580-89191599 | None:intergenic | 45.0% | |
| GAAGTCACTTAATCCTGACC+AGG | - | chr7.4:89190628-89190647 | None:intergenic | 45.0% | |
| GAGTAGAAGACGTGTGTGTT+AGG | + | chr7.4:89190395-89190414 | MS.gene021689:intron | 45.0% | |
| GATTTCAGCAGTATAGCCAC+CGG | - | chr7.4:89188806-89188825 | None:intergenic | 45.0% | |
| TAGAAGACGTGTGTGTTAGG+TGG | + | chr7.4:89190398-89190417 | MS.gene021689:intron | 45.0% | |
| TAGTTGCGGCAACAGTTACT+GGG | + | chr7.4:89192207-89192226 | MS.gene021689:CDS | 45.0% | |
| TATAGCTGTTGTCCCCGTTA+CGG | - | chr7.4:89192189-89192208 | None:intergenic | 45.0% | |
| TCTTCGACAGGATATGCACA+TGG | + | chr7.4:89191893-89191912 | MS.gene021689:intron | 45.0% | |
| TGATTGCTCCATCTGTGAGA+CGG | - | chr7.4:89188570-89188589 | None:intergenic | 45.0% | |
| TGTTCGACACACCAGTGTTA+TGG | + | chr7.4:89190192-89190211 | MS.gene021689:intron | 45.0% | |
| TTTGGTCCAATGCTGTCTCA+GGG | + | chr7.4:89190940-89190959 | MS.gene021689:intron | 45.0% | |
| ! | GAAAGGAGCTCTTTGGGTTT+CGG | + | chr7.4:89192280-89192299 | MS.gene021689:CDS | 45.0% |
| ! | GTCTCAGGGATCGATGATTT+TGG | + | chr7.4:89190954-89190973 | MS.gene021689:intron | 45.0% |
| ! | TGGAAGCACAACCATAACAC+TGG | - | chr7.4:89190206-89190225 | None:intergenic | 45.0% |
| ! | TGTAAGTTGGAGGGCCTATA+TGG | + | chr7.4:89189834-89189853 | MS.gene021689:intron | 45.0% |
| ! | TTTTGGTCCAATGCTGTCTC+AGG | + | chr7.4:89190939-89190958 | MS.gene021689:intron | 45.0% |
| !! | TTTTAGGGATGCTTATGCCC+TGG | + | chr7.4:89189975-89189994 | MS.gene021689:CDS | 45.0% |
| AACGTGGACCGACAGAAGAA+TGG | + | chr7.4:89190365-89190384 | MS.gene021689:intron | 50.0% | |
| AATCAGCTGTGACCGTAACG+GGG | + | chr7.4:89192174-89192193 | MS.gene021689:CDS | 50.0% | |
| ACCCAATCAGGGGCAATCAT+AGG | - | chr7.4:89190679-89190698 | None:intergenic | 50.0% | |
| ACTTCGCGAAAGGAGCTCTT+TGG | + | chr7.4:89192273-89192292 | MS.gene021689:CDS | 50.0% | |
| AGTAGCAGCTACTTCGCGAA+AGG | + | chr7.4:89192263-89192282 | MS.gene021689:CDS | 50.0% | |
| AGTTACTGGGAGAGCAGCTA+TGG | + | chr7.4:89192220-89192239 | MS.gene021689:CDS | 50.0% | |
| ATCGATCCCTGAGACAGCAT+TGG | - | chr7.4:89190949-89190968 | None:intergenic | 50.0% | |
| CAAAAGAGGGTGATCCTGCA+AGG | - | chr7.4:89188650-89188669 | None:intergenic | 50.0% | |
| CAATCAGGGGCAATCATAGG+TGG | - | chr7.4:89190676-89190695 | None:intergenic | 50.0% | |
| CACCTATGATTGCCCCTGAT+TGG | + | chr7.4:89190674-89190693 | MS.gene021689:intron | 50.0% | |
| CACTCCGACCATTCTTCTGT+CGG | - | chr7.4:89190376-89190395 | None:intergenic | 50.0% | |
| CATAGTCAGTGCTTCTCCAG+GGG | - | chr7.4:89191934-89191953 | None:intergenic | 50.0% | |
| CCATAGTCAGTGCTTCTCCA+GGG | - | chr7.4:89191935-89191954 | None:intergenic | 50.0% | |
| CGTTACGGTCACAGCTGATT+TGG | - | chr7.4:89192174-89192193 | None:intergenic | 50.0% | |
| CTTCGCGAAAGGAGCTCTTT+GGG | + | chr7.4:89192274-89192293 | MS.gene021689:CDS | 50.0% | |
| GGGGACAACAGCTATAGTTG+CGG | + | chr7.4:89192193-89192212 | MS.gene021689:CDS | 50.0% | |
| TGACTTCCGCTGTACGCTTA+GGG | + | chr7.4:89190641-89190660 | MS.gene021689:intron | 50.0% | |
| TGATTGCGAATCACCTGGTC+AGG | + | chr7.4:89190612-89190631 | MS.gene021689:intron | 50.0% | |
| TGGACCGACAGAAGAATGGT+CGG | + | chr7.4:89190369-89190388 | MS.gene021689:intron | 50.0% | |
| TTCTTCTGTCGGTCCACGTT+TGG | - | chr7.4:89190365-89190384 | None:intergenic | 50.0% | |
| TTTCGCGAAGTAGCTGCTAC+TGG | - | chr7.4:89192264-89192283 | None:intergenic | 50.0% | |
| ! | CTTGCAGGATCACCCTCTTT+TGG | + | chr7.4:89188648-89188667 | MS.gene021689:intron | 50.0% |
| ! | GCATGAGTATGTTGGTAGGG+TGG | + | chr7.4:89190430-89190449 | MS.gene021689:intron | 50.0% |
| !! | CATCAACGCTGTTCTGGAGT+GGG | - | chr7.4:89190707-89190726 | None:intergenic | 50.0% |
| !! | GCGAAATCAGCCGCTGATTT+GGG | + | chr7.4:89192320-89192339 | MS.gene021689:CDS | 50.0% |
| !! | TCATCAACGCTGTTCTGGAG+TGG | - | chr7.4:89190708-89190727 | None:intergenic | 50.0% |
| !!! | GGTTAGCGAGTTTTGAGACC+TGG | + | chr7.4:89189347-89189366 | MS.gene021689:intron | 50.0% |
| AGTGGGCCAAGACCCAATCA+GGG | - | chr7.4:89190690-89190709 | None:intergenic | 55.0% | |
| GATTGCCCCTGATTGGGTCT+TGG | + | chr7.4:89190681-89190700 | MS.gene021689:intron | 55.0% | |
| GCCATAGTCAGTGCTTCTCC+AGG | - | chr7.4:89191936-89191955 | None:intergenic | 55.0% | |
| GTGACTTCCGCTGTACGCTT+AGG | + | chr7.4:89190640-89190659 | MS.gene021689:intron | 55.0% | |
| TGGCGTGATTGCGAATCACC+TGG | + | chr7.4:89190607-89190626 | MS.gene021689:intron | 55.0% | |
| ! | GGCGAAATCAGCCGCTGATT+TGG | + | chr7.4:89192319-89192338 | MS.gene021689:CDS | 55.0% |
| !! | AGCACTGACTATGGCCCAAC+AGG | + | chr7.4:89191941-89191960 | MS.gene021689:CDS | 55.0% |
| !! | CCCTGGAGAAGCACTGACTA+TGG | + | chr7.4:89191932-89191951 | MS.gene021689:CDS | 55.0% |
| GAGTGGGCCAAGACCCAATC+AGG | - | chr7.4:89190691-89190710 | None:intergenic | 60.0% | |
| GTGGGCCAAGACCCAATCAG+GGG | - | chr7.4:89190689-89190708 | None:intergenic | 60.0% | |
| GGGAGAGCAGCTATGGCTGC+TGG | + | chr7.4:89192227-89192246 | MS.gene021689:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 89188562 | 89192361 | 89188562 | ID=MS.gene021689 |
| chr7.4 | mRNA | 89188562 | 89192361 | 89188562 | ID=MS.gene021689.t1;Parent=MS.gene021689 |
| chr7.4 | exon | 89188562 | 89188632 | 89188562 | ID=MS.gene021689.t1.exon1;Parent=MS.gene021689.t1 |
| chr7.4 | CDS | 89188562 | 89188632 | 89188562 | ID=cds.MS.gene021689.t1;Parent=MS.gene021689.t1 |
| chr7.4 | exon | 89188774 | 89188911 | 89188774 | ID=MS.gene021689.t1.exon2;Parent=MS.gene021689.t1 |
| chr7.4 | CDS | 89188774 | 89188911 | 89188774 | ID=cds.MS.gene021689.t1;Parent=MS.gene021689.t1 |
| chr7.4 | exon | 89189942 | 89190017 | 89189942 | ID=MS.gene021689.t1.exon3;Parent=MS.gene021689.t1 |
| chr7.4 | CDS | 89189942 | 89190017 | 89189942 | ID=cds.MS.gene021689.t1;Parent=MS.gene021689.t1 |
| chr7.4 | exon | 89190961 | 89191077 | 89190961 | ID=MS.gene021689.t1.exon4;Parent=MS.gene021689.t1 |
| chr7.4 | CDS | 89190961 | 89191077 | 89190961 | ID=cds.MS.gene021689.t1;Parent=MS.gene021689.t1 |
| chr7.4 | exon | 89191903 | 89192361 | 89191903 | ID=MS.gene021689.t1.exon5;Parent=MS.gene021689.t1 |
| chr7.4 | CDS | 89191903 | 89192361 | 89191903 | ID=cds.MS.gene021689.t1;Parent=MS.gene021689.t1 |
| Gene Sequence |
| Protein sequence |
