Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016075.t1 | AFK38628.1 | 85 | 187 | 25 | 1 | 1 | 187 | 1 | 184 | 3.00E-79 | 304.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016075.t1 | Q9SK27 | 48.6 | 181 | 83 | 4 | 4 | 184 | 8 | 178 | 3.1e-40 | 166.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016075.t1 | I3SED6 | 85.0 | 187 | 25 | 1 | 1 | 187 | 1 | 184 | 2.2e-79 | 304.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032997 | MS.gene016075 | PPI |
| MS.gene016075 | MS.gene038783 | PPI |
| MS.gene016075 | MS.gene065888 | PPI |
| MS.gene016075 | MS.gene031754 | PPI |
| MS.gene006553 | MS.gene016075 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016075.t1 | MTR_1g014120 | 94.118 | 187 | 8 | 1 | 1 | 187 | 1 | 184 | 1.31e-107 | 306 |
| MS.gene016075.t1 | MTR_3g105930 | 64.474 | 152 | 47 | 3 | 25 | 176 | 24 | 168 | 7.86e-64 | 195 |
| MS.gene016075.t1 | MTR_7g090170 | 56.757 | 148 | 40 | 4 | 25 | 172 | 24 | 147 | 1.23e-49 | 157 |
| MS.gene016075.t1 | MTR_8g463180 | 47.107 | 121 | 58 | 3 | 12 | 132 | 11 | 125 | 8.09e-35 | 124 |
| MS.gene016075.t1 | MTR_4g081100 | 49.541 | 109 | 54 | 1 | 24 | 132 | 28 | 135 | 3.30e-34 | 120 |
| MS.gene016075.t1 | MTR_2g079030 | 42.105 | 152 | 84 | 3 | 10 | 161 | 8 | 155 | 1.03e-33 | 125 |
| MS.gene016075.t1 | MTR_6g022170 | 48.182 | 110 | 54 | 2 | 21 | 129 | 26 | 133 | 1.36e-31 | 112 |
| MS.gene016075.t1 | MTR_2g090575 | 41.818 | 165 | 77 | 7 | 11 | 163 | 11 | 168 | 7.85e-30 | 112 |
| MS.gene016075.t1 | MTR_2g090580 | 38.286 | 175 | 88 | 4 | 30 | 187 | 29 | 200 | 2.02e-29 | 107 |
| MS.gene016075.t1 | MTR_4g078410 | 44.615 | 130 | 68 | 3 | 25 | 153 | 22 | 148 | 2.57e-29 | 107 |
| MS.gene016075.t1 | MTR_2g101300 | 37.654 | 162 | 87 | 7 | 4 | 162 | 2 | 152 | 2.62e-28 | 104 |
| MS.gene016075.t1 | MTR_4g111640 | 36.957 | 138 | 78 | 4 | 1 | 132 | 1 | 135 | 6.00e-27 | 100 |
| MS.gene016075.t1 | MTR_4g124280 | 45.455 | 99 | 54 | 0 | 32 | 130 | 28 | 126 | 7.93e-27 | 102 |
| MS.gene016075.t1 | MTR_4g077787 | 36.913 | 149 | 81 | 5 | 1 | 143 | 1 | 142 | 8.04e-27 | 100 |
| MS.gene016075.t1 | MTR_2g083250 | 41.818 | 110 | 61 | 3 | 25 | 132 | 23 | 131 | 6.10e-26 | 100 |
| MS.gene016075.t1 | MTR_8g086360 | 36.813 | 182 | 102 | 5 | 7 | 178 | 3 | 181 | 8.10e-26 | 98.6 |
| MS.gene016075.t1 | MTR_8g094990 | 36.686 | 169 | 91 | 4 | 12 | 167 | 8 | 173 | 2.23e-24 | 96.7 |
| MS.gene016075.t1 | MTR_4g130780 | 37.302 | 126 | 74 | 1 | 8 | 128 | 4 | 129 | 5.27e-24 | 93.6 |
| MS.gene016075.t1 | MTR_4g112310 | 44.706 | 85 | 45 | 1 | 48 | 132 | 3 | 85 | 2.68e-23 | 90.1 |
| MS.gene016075.t1 | MTR_8g095013 | 42.373 | 118 | 63 | 3 | 11 | 128 | 11 | 123 | 6.46e-23 | 93.2 |
| MS.gene016075.t1 | MTR_2g088990 | 37.013 | 154 | 87 | 5 | 15 | 168 | 13 | 156 | 8.49e-23 | 91.7 |
| MS.gene016075.t1 | MTR_4g130800 | 37.405 | 131 | 79 | 3 | 1 | 129 | 1 | 130 | 9.16e-23 | 92.4 |
| MS.gene016075.t1 | MTR_1g077790 | 39.796 | 98 | 58 | 1 | 32 | 128 | 32 | 129 | 3.38e-22 | 89.0 |
| MS.gene016075.t1 | MTR_4g130800 | 42.202 | 109 | 61 | 2 | 22 | 129 | 22 | 129 | 3.80e-22 | 90.5 |
| MS.gene016075.t1 | MTR_5g006040 | 26.705 | 176 | 121 | 3 | 12 | 187 | 11 | 178 | 8.49e-22 | 87.8 |
| MS.gene016075.t1 | MTR_8g095020 | 40.625 | 128 | 63 | 5 | 30 | 148 | 27 | 150 | 2.30e-21 | 89.4 |
| MS.gene016075.t1 | MTR_3g092170 | 35.220 | 159 | 85 | 3 | 12 | 163 | 8 | 155 | 3.09e-21 | 88.2 |
| MS.gene016075.t1 | MTR_4g114870 | 32.738 | 168 | 92 | 2 | 32 | 178 | 194 | 361 | 4.77e-20 | 86.3 |
| MS.gene016075.t1 | MTR_4g114870 | 31.852 | 135 | 89 | 2 | 12 | 146 | 13 | 144 | 7.48e-18 | 80.1 |
| MS.gene016075.t1 | MTR_1g104800 | 35.833 | 120 | 75 | 1 | 49 | 166 | 43 | 162 | 1.64e-18 | 79.3 |
| MS.gene016075.t1 | MTR_6g083240 | 33.083 | 133 | 81 | 4 | 37 | 165 | 35 | 163 | 6.46e-17 | 74.7 |
| MS.gene016075.t1 | MTR_0334s0010 | 36.885 | 122 | 66 | 4 | 15 | 128 | 7 | 125 | 1.67e-16 | 74.3 |
| MS.gene016075.t1 | MTR_6g080660 | 33.333 | 114 | 69 | 3 | 17 | 130 | 18 | 124 | 1.96e-16 | 74.3 |
| MS.gene016075.t1 | MTR_4g114830 | 34.375 | 96 | 61 | 2 | 25 | 118 | 25 | 120 | 2.67e-16 | 72.8 |
| MS.gene016075.t1 | MTR_8g007020 | 36.719 | 128 | 72 | 4 | 5 | 130 | 2 | 122 | 3.76e-16 | 73.2 |
| MS.gene016075.t1 | MTR_1g090190 | 31.613 | 155 | 93 | 6 | 32 | 184 | 26 | 169 | 6.34e-16 | 72.4 |
| MS.gene016075.t1 | MTR_8g007035 | 35.938 | 128 | 73 | 4 | 5 | 130 | 2 | 122 | 1.95e-15 | 71.2 |
| MS.gene016075.t1 | MTR_8g099220 | 37.113 | 97 | 60 | 1 | 32 | 128 | 32 | 127 | 8.53e-15 | 68.2 |
| MS.gene016075.t1 | MTR_4g067200 | 27.869 | 122 | 77 | 3 | 17 | 128 | 9 | 129 | 2.51e-14 | 67.8 |
| MS.gene016075.t1 | MTR_4g066110 | 27.869 | 122 | 77 | 3 | 17 | 128 | 9 | 129 | 2.51e-14 | 67.8 |
| MS.gene016075.t1 | MTR_2g025580 | 34.426 | 122 | 65 | 3 | 44 | 164 | 39 | 146 | 7.34e-14 | 66.6 |
| MS.gene016075.t1 | MTR_7g086100 | 32.558 | 129 | 81 | 3 | 7 | 134 | 4 | 127 | 1.38e-13 | 67.0 |
| MS.gene016075.t1 | MTR_6g023760 | 36.735 | 98 | 56 | 4 | 32 | 128 | 29 | 121 | 6.09e-13 | 64.3 |
| MS.gene016075.t1 | MTR_3g099540 | 39.506 | 81 | 48 | 1 | 48 | 128 | 42 | 121 | 9.54e-13 | 62.8 |
| MS.gene016075.t1 | MTR_8g089110 | 32.759 | 116 | 74 | 2 | 11 | 126 | 7 | 118 | 1.04e-12 | 62.4 |
| MS.gene016075.t1 | MTR_1g112700 | 22.995 | 187 | 121 | 5 | 1 | 182 | 1 | 169 | 1.17e-12 | 63.5 |
| MS.gene016075.t1 | MTR_3g099580 | 40.741 | 81 | 47 | 1 | 48 | 128 | 41 | 120 | 1.44e-12 | 63.5 |
| MS.gene016075.t1 | MTR_3g099570 | 39.506 | 81 | 48 | 1 | 48 | 128 | 41 | 120 | 3.18e-12 | 62.4 |
| MS.gene016075.t1 | MTR_7g086090 | 30.579 | 121 | 79 | 2 | 14 | 134 | 12 | 127 | 7.12e-12 | 62.4 |
| MS.gene016075.t1 | MTR_7g086230 | 29.167 | 120 | 80 | 2 | 15 | 134 | 13 | 127 | 1.07e-11 | 60.8 |
| MS.gene016075.t1 | MTR_7g086280 | 29.457 | 129 | 85 | 3 | 7 | 134 | 4 | 127 | 1.11e-11 | 60.8 |
| MS.gene016075.t1 | MTR_1g090420 | 27.097 | 155 | 105 | 4 | 11 | 161 | 13 | 163 | 1.13e-11 | 61.6 |
| MS.gene016075.t1 | MTR_6g013420 | 30.827 | 133 | 81 | 5 | 4 | 131 | 11 | 137 | 2.04e-11 | 60.1 |
| MS.gene016075.t1 | MTR_3g099980 | 37.634 | 93 | 53 | 2 | 37 | 128 | 34 | 122 | 2.57e-11 | 60.5 |
| MS.gene016075.t1 | MTR_3g099680 | 37.634 | 93 | 53 | 2 | 37 | 128 | 34 | 122 | 8.44e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016075.t1 | AT4G31840 | 49.730 | 185 | 77 | 4 | 8 | 187 | 2 | 175 | 1.06e-57 | 179 |
| MS.gene016075.t1 | AT2G25060 | 50.286 | 175 | 75 | 5 | 11 | 184 | 15 | 178 | 1.47e-55 | 174 |
| MS.gene016075.t1 | AT5G25090 | 52.459 | 122 | 58 | 0 | 11 | 132 | 9 | 130 | 5.00e-46 | 150 |
| MS.gene016075.t1 | AT4G30590 | 59.048 | 105 | 43 | 0 | 28 | 132 | 28 | 132 | 8.24e-45 | 147 |
| MS.gene016075.t1 | AT5G57920 | 44.079 | 152 | 82 | 3 | 26 | 177 | 21 | 169 | 9.84e-44 | 144 |
| MS.gene016075.t1 | AT5G57920 | 44.079 | 152 | 82 | 3 | 26 | 177 | 53 | 201 | 1.04e-43 | 145 |
| MS.gene016075.t1 | AT5G57920 | 44.079 | 152 | 82 | 3 | 26 | 177 | 20 | 168 | 1.25e-43 | 144 |
| MS.gene016075.t1 | AT2G23990 | 50.000 | 148 | 60 | 3 | 8 | 150 | 3 | 141 | 4.78e-41 | 138 |
| MS.gene016075.t1 | AT2G23990 | 44.311 | 167 | 60 | 4 | 8 | 150 | 3 | 160 | 2.49e-36 | 126 |
| MS.gene016075.t1 | AT3G20570 | 41.104 | 163 | 82 | 5 | 12 | 164 | 15 | 173 | 1.58e-35 | 124 |
| MS.gene016075.t1 | AT5G14345 | 57.143 | 91 | 37 | 1 | 40 | 130 | 28 | 116 | 2.18e-31 | 111 |
| MS.gene016075.t1 | AT5G53870 | 40.252 | 159 | 84 | 5 | 10 | 161 | 9 | 163 | 1.18e-29 | 112 |
| MS.gene016075.t1 | AT5G53870 | 40.252 | 159 | 84 | 5 | 10 | 161 | 9 | 163 | 1.52e-29 | 112 |
| MS.gene016075.t1 | AT4G28365 | 40.123 | 162 | 88 | 6 | 13 | 168 | 11 | 169 | 1.67e-29 | 108 |
| MS.gene016075.t1 | AT4G27520 | 44.628 | 121 | 63 | 3 | 12 | 132 | 16 | 132 | 1.98e-28 | 108 |
| MS.gene016075.t1 | AT3G18590 | 45.000 | 120 | 60 | 4 | 12 | 129 | 12 | 127 | 1.45e-27 | 102 |
| MS.gene016075.t1 | AT4G32490 | 35.429 | 175 | 84 | 5 | 13 | 166 | 11 | 177 | 4.45e-26 | 99.8 |
| MS.gene016075.t1 | AT1G48940 | 38.889 | 126 | 69 | 3 | 13 | 132 | 6 | 129 | 2.10e-25 | 97.1 |
| MS.gene016075.t1 | AT2G31050 | 36.170 | 141 | 84 | 3 | 5 | 145 | 6 | 140 | 3.46e-22 | 89.4 |
| MS.gene016075.t1 | AT1G79800 | 34.459 | 148 | 85 | 4 | 8 | 147 | 8 | 151 | 3.98e-22 | 89.0 |
| MS.gene016075.t1 | AT1G64640 | 35.897 | 117 | 74 | 1 | 32 | 148 | 36 | 151 | 1.78e-21 | 87.0 |
| MS.gene016075.t1 | AT2G26720 | 33.813 | 139 | 84 | 3 | 11 | 149 | 12 | 142 | 1.77e-20 | 85.1 |
| MS.gene016075.t1 | AT2G32300 | 35.714 | 140 | 74 | 5 | 25 | 160 | 23 | 150 | 5.42e-19 | 82.0 |
| MS.gene016075.t1 | AT2G32300 | 35.714 | 140 | 74 | 5 | 25 | 160 | 53 | 180 | 1.78e-18 | 81.3 |
| MS.gene016075.t1 | AT5G20230 | 34.426 | 122 | 76 | 3 | 26 | 145 | 23 | 142 | 4.63e-17 | 75.9 |
| MS.gene016075.t1 | AT5G26330 | 37.500 | 80 | 50 | 0 | 50 | 129 | 43 | 122 | 1.99e-16 | 73.9 |
| MS.gene016075.t1 | AT5G07475 | 28.571 | 182 | 117 | 6 | 12 | 187 | 10 | 184 | 6.64e-16 | 72.4 |
| MS.gene016075.t1 | AT3G60270 | 36.364 | 99 | 58 | 2 | 32 | 130 | 29 | 122 | 2.22e-14 | 68.6 |
| MS.gene016075.t1 | AT1G72230 | 31.967 | 122 | 72 | 2 | 48 | 159 | 38 | 158 | 3.38e-13 | 65.1 |
| MS.gene016075.t1 | AT1G45063 | 31.933 | 119 | 75 | 3 | 12 | 129 | 14 | 127 | 8.54e-13 | 65.5 |
| MS.gene016075.t1 | AT1G45063 | 31.933 | 119 | 75 | 3 | 12 | 129 | 14 | 127 | 1.22e-12 | 65.5 |
| MS.gene016075.t1 | AT3G27200 | 29.839 | 124 | 76 | 3 | 11 | 129 | 5 | 122 | 3.18e-12 | 62.4 |
Find 45 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCATCTTGTTCTCTTT+TGG | 0.177913 | 1.4:+7818254 | MS.gene016075:CDS |
| TTGGTTCTTGTTGTTCTCTT+TGG | 0.235363 | 1.4:+7818273 | MS.gene016075:CDS |
| CTGTGGTTGTCATGAGTCTA+AGG | 0.276529 | 1.4:+7818981 | MS.gene016075:CDS |
| CCCATCATTGTAGTGTTTGA+TGG | 0.297797 | 1.4:-7818873 | None:intergenic |
| TCTCCACTGATGTAGTAGTA+TGG | 0.331847 | 1.4:-7818926 | None:intergenic |
| AAAGTGAGATTTGATCATTC+TGG | 0.347650 | 1.4:+7818902 | MS.gene016075:CDS |
| AATCTGATTCTCTCAACAAA+TGG | 0.402045 | 1.4:+7818364 | MS.gene016075:CDS |
| GGAGCAACAGCTGAGCCAGC+TGG | 0.404423 | 1.4:-7819064 | None:intergenic |
| CTACTACATCAGTGGAGAAA+AGG | 0.404851 | 1.4:+7818931 | MS.gene016075:CDS |
| CCCATCAAACACTACAATGA+TGG | 0.417208 | 1.4:+7818872 | MS.gene016075:CDS |
| CCATCATTGTAGTGTTTGAT+GGG | 0.419117 | 1.4:-7818872 | None:intergenic |
| TGCATGGAAGGTTCCTTCTT+CGG | 0.420616 | 1.4:+7818341 | MS.gene016075:CDS |
| TACTTAGATGGTCTCCAACT+TGG | 0.420901 | 1.4:-7818404 | None:intergenic |
| CCTTCACCAGCTGAAGTTGA+TGG | 0.422615 | 1.4:+7819040 | MS.gene016075:CDS |
| GCAAGGTGGTGGTGTATTTG+TGG | 0.435276 | 1.4:+7819114 | MS.gene016075:CDS |
| AAAAGTGAAAATTACTTAGA+TGG | 0.435763 | 1.4:-7818416 | None:intergenic |
| AAAACAGTTGCACCACTTGT+TGG | 0.440200 | 1.4:-7819091 | None:intergenic |
| GCAGCTAAGGATATCTTGCT+TGG | 0.450579 | 1.4:+7818306 | MS.gene016075:CDS |
| TACTACATCAGTGGAGAAAA+GGG | 0.477152 | 1.4:+7818932 | MS.gene016075:CDS |
| ATCTGATTCTCTCAACAAAT+GGG | 0.481996 | 1.4:+7818365 | MS.gene016075:CDS |
| TGTGGTTGTCATGAGTCTAA+GGG | 0.500303 | 1.4:+7818982 | MS.gene016075:CDS |
| GTTGCACCACTTGTTGGAGC+TGG | 0.502974 | 1.4:-7819085 | None:intergenic |
| TCAAGTGTTCGTTTCCAAGT+TGG | 0.513908 | 1.4:+7818390 | MS.gene016075:CDS |
| AGAGAATCAGATTCCGAAGA+AGG | 0.516269 | 1.4:-7818354 | None:intergenic |
| ACTTCAGCTGGTGAAGGTGC+TGG | 0.517037 | 1.4:-7819034 | None:intergenic |
| CCATCAAACACTACAATGAT+GGG | 0.517725 | 1.4:+7818873 | MS.gene016075:CDS |
| GCTGAAGTTGATGGTCCAGC+TGG | 0.527675 | 1.4:+7819049 | MS.gene016075:CDS |
| GCTGGACCATCAACTTCAGC+TGG | 0.530028 | 1.4:-7819046 | None:intergenic |
| TCAGTTTGGAAATATGAAGC+TGG | 0.536642 | 1.4:+7818791 | MS.gene016075:intron |
| GAAAAGGGTCATTGTGAGAA+GGG | 0.553149 | 1.4:+7818947 | MS.gene016075:CDS |
| GTGGTTGTCATGAGTCTAAG+GGG | 0.573266 | 1.4:+7818983 | MS.gene016075:CDS |
| CCATCAACTTCAGCTGGTGA+AGG | 0.581807 | 1.4:-7819040 | None:intergenic |
| GGTGGTGTATTTGTGGCTGT+AGG | 0.582095 | 1.4:+7819121 | MS.gene016075:CDS |
| AGAAAAGGGTCATTGTGAGA+AGG | 0.594361 | 1.4:+7818946 | MS.gene016075:CDS |
| GTTGCTCCAGCTCCAACAAG+TGG | 0.607631 | 1.4:+7819079 | MS.gene016075:CDS |
| GCTAAGGATATCTTGCTTGG+TGG | 0.617121 | 1.4:+7818309 | MS.gene016075:CDS |
| GGTCCATACTACTACATCAG+TGG | 0.620422 | 1.4:+7818923 | MS.gene016075:CDS |
| TGGCAAAACTGATGCATGGA+AGG | 0.623442 | 1.4:+7818329 | MS.gene016075:CDS |
| TGGTTGTCATGAGTCTAAGG+GGG | 0.630347 | 1.4:+7818984 | MS.gene016075:CDS |
| TAGGAGTGTTTGTTGCCATG+TGG | 0.640277 | 1.4:+7819140 | MS.gene016075:CDS |
| TTGGTGGCAAAACTGATGCA+TGG | 0.676457 | 1.4:+7818325 | MS.gene016075:CDS |
| TTCAAATCAGAAAAGCCACA+TGG | 0.691376 | 1.4:-7819155 | None:intergenic |
| GGTTGTCATGAGTCTAAGGG+GGG | 0.691450 | 1.4:+7818985 | MS.gene016075:CDS |
| GTTGTCATGAGTCTAAGGGG+GGG | 0.700416 | 1.4:+7818986 | MS.gene016075:CDS |
| GAAGGGTCAGAAGCTTACTG+TGG | 0.745278 | 1.4:+7818964 | MS.gene016075:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATTTAGTGATAAAAA+AGG | - | chr1.4:7818455-7818474 | None:intergenic | 15.0% |
| !! | CATCACATAAAAATAAAAAT+TGG | - | chr1.4:7818725-7818744 | None:intergenic | 15.0% |
| !!! | AATATAAAAAAATTGGGTTT+TGG | - | chr1.4:7818645-7818664 | None:intergenic | 15.0% |
| !!! | ACAATAAAGAAACAATTTTA+AGG | - | chr1.4:7818559-7818578 | None:intergenic | 15.0% |
| !!! | TGAATTTTTACTGATAATTA+AGG | - | chr1.4:7818495-7818514 | None:intergenic | 15.0% |
| !! | AAAAGTGAAAATTACTTAGA+TGG | - | chr1.4:7818419-7818438 | None:intergenic | 20.0% |
| !! | GGTGGAAATATAAAAAAATT+GGG | - | chr1.4:7818651-7818670 | None:intergenic | 20.0% |
| !! | TGGTGGAAATATAAAAAAAT+TGG | - | chr1.4:7818652-7818671 | None:intergenic | 20.0% |
| !!! | TTTTTACATTTTCATCATCT+TGG | + | chr1.4:7818608-7818627 | MS.gene016075:intron | 20.0% |
| ! | ATGAACAATAAAGTAGTTAG+TGG | - | chr1.4:7818761-7818780 | None:intergenic | 25.0% |
| ! | TTGAAAACAAAATACCAAGA+TGG | - | chr1.4:7818672-7818691 | None:intergenic | 25.0% |
| !! | TTTTTATATTTCCACCATCT+TGG | + | chr1.4:7818655-7818674 | MS.gene016075:intron | 25.0% |
| !!! | TCATATTTTTGTTCTCAGTT+TGG | + | chr1.4:7818777-7818796 | MS.gene016075:intron | 25.0% |
| AAAACAAAATACCAAGATGG+TGG | - | chr1.4:7818669-7818688 | None:intergenic | 30.0% | |
| AAAGTGAGATTTGATCATTC+TGG | + | chr1.4:7818902-7818921 | MS.gene016075:CDS | 30.0% | |
| AATCTGATTCTCTCAACAAA+TGG | + | chr1.4:7818364-7818383 | MS.gene016075:CDS | 30.0% | |
| ATCTGATTCTCTCAACAAAT+GGG | + | chr1.4:7818365-7818384 | MS.gene016075:CDS | 30.0% | |
| ! | TTCATCATCTTGTTCTCTTT+TGG | + | chr1.4:7818254-7818273 | MS.gene016075:CDS | 30.0% |
| CCATCAAACACTACAATGAT+GGG | + | chr1.4:7818873-7818892 | MS.gene016075:CDS | 35.0% | |
| CCATCATTGTAGTGTTTGAT+GGG | - | chr1.4:7818875-7818894 | None:intergenic | 35.0% | |
| TACTACATCAGTGGAGAAAA+GGG | + | chr1.4:7818932-7818951 | MS.gene016075:CDS | 35.0% | |
| TCAGTTTGGAAATATGAAGC+TGG | + | chr1.4:7818791-7818810 | MS.gene016075:intron | 35.0% | |
| ! | TTCTGTTTTGCAAGTGAGTA+AGG | + | chr1.4:7818820-7818839 | MS.gene016075:CDS | 35.0% |
| !! | TTGGTTCTTGTTGTTCTCTT+TGG | + | chr1.4:7818273-7818292 | MS.gene016075:CDS | 35.0% |
| AAAACAGTTGCACCACTTGT+TGG | - | chr1.4:7819094-7819113 | None:intergenic | 40.0% | |
| AGAAAAGGGTCATTGTGAGA+AGG | + | chr1.4:7818946-7818965 | MS.gene016075:CDS | 40.0% | |
| AGAGAATCAGATTCCGAAGA+AGG | - | chr1.4:7818357-7818376 | None:intergenic | 40.0% | |
| CCCATCAAACACTACAATGA+TGG | + | chr1.4:7818872-7818891 | MS.gene016075:CDS | 40.0% | |
| CCCATCATTGTAGTGTTTGA+TGG | - | chr1.4:7818876-7818895 | None:intergenic | 40.0% | |
| CTACTACATCAGTGGAGAAA+AGG | + | chr1.4:7818931-7818950 | MS.gene016075:CDS | 40.0% | |
| GAAAAGGGTCATTGTGAGAA+GGG | + | chr1.4:7818947-7818966 | MS.gene016075:CDS | 40.0% | |
| GCTGGTGAAAAAGCAACAAT+GGG | - | chr1.4:7819019-7819038 | None:intergenic | 40.0% | |
| TACTTAGATGGTCTCCAACT+TGG | - | chr1.4:7818407-7818426 | None:intergenic | 40.0% | |
| TCAAGTGTTCGTTTCCAAGT+TGG | + | chr1.4:7818390-7818409 | MS.gene016075:CDS | 40.0% | |
| TCTCCACTGATGTAGTAGTA+TGG | - | chr1.4:7818929-7818948 | None:intergenic | 40.0% | |
| TGCTGGTGAAAAAGCAACAA+TGG | - | chr1.4:7819020-7819039 | None:intergenic | 40.0% | |
| TGTGGTTGTCATGAGTCTAA+GGG | + | chr1.4:7818982-7819001 | MS.gene016075:CDS | 40.0% | |
| !!! | GTAGTGTTTGATGGGTTTTG+AGG | - | chr1.4:7818867-7818886 | None:intergenic | 40.0% |
| CTGTGGTTGTCATGAGTCTA+AGG | + | chr1.4:7818981-7819000 | MS.gene016075:CDS | 45.0% | |
| GCAGCTAAGGATATCTTGCT+TGG | + | chr1.4:7818306-7818325 | MS.gene016075:CDS | 45.0% | |
| GCTAAGGATATCTTGCTTGG+TGG | + | chr1.4:7818309-7818328 | MS.gene016075:CDS | 45.0% | |
| GGTCCATACTACTACATCAG+TGG | + | chr1.4:7818923-7818942 | MS.gene016075:CDS | 45.0% | |
| GTGGTTGTCATGAGTCTAAG+GGG | + | chr1.4:7818983-7819002 | MS.gene016075:CDS | 45.0% | |
| TGCATGGAAGGTTCCTTCTT+CGG | + | chr1.4:7818341-7818360 | MS.gene016075:CDS | 45.0% | |
| TGGCAAAACTGATGCATGGA+AGG | + | chr1.4:7818329-7818348 | MS.gene016075:CDS | 45.0% | |
| TGGTTGTCATGAGTCTAAGG+GGG | + | chr1.4:7818984-7819003 | MS.gene016075:CDS | 45.0% | |
| ! | AGTGGTGCAACTGTTTTGCA+AGG | + | chr1.4:7819097-7819116 | MS.gene016075:CDS | 45.0% |
| ! | TGGTTGTGCTTTTGCAGCTA+AGG | + | chr1.4:7818293-7818312 | MS.gene016075:CDS | 45.0% |
| ! | TTGGTGGCAAAACTGATGCA+TGG | + | chr1.4:7818325-7818344 | MS.gene016075:CDS | 45.0% |
| !! | TAGGAGTGTTTGTTGCCATG+TGG | + | chr1.4:7819140-7819159 | MS.gene016075:CDS | 45.0% |
| CCATCAACTTCAGCTGGTGA+AGG | - | chr1.4:7819043-7819062 | None:intergenic | 50.0% | |
| CCTTCACCAGCTGAAGTTGA+TGG | + | chr1.4:7819040-7819059 | MS.gene016075:CDS | 50.0% | |
| GAAGGGTCAGAAGCTTACTG+TGG | + | chr1.4:7818964-7818983 | MS.gene016075:CDS | 50.0% | |
| GGTGGTGTATTTGTGGCTGT+AGG | + | chr1.4:7819121-7819140 | MS.gene016075:CDS | 50.0% | |
| GGTTGTCATGAGTCTAAGGG+GGG | + | chr1.4:7818985-7819004 | MS.gene016075:CDS | 50.0% | |
| GTTGTCATGAGTCTAAGGGG+GGG | + | chr1.4:7818986-7819005 | MS.gene016075:CDS | 50.0% | |
| ! | GCAACTGTTTTGCAAGGTGG+TGG | + | chr1.4:7819103-7819122 | MS.gene016075:CDS | 50.0% |
| ! | GCAAGGTGGTGGTGTATTTG+TGG | + | chr1.4:7819114-7819133 | MS.gene016075:CDS | 50.0% |
| ! | GGTGCAACTGTTTTGCAAGG+TGG | + | chr1.4:7819100-7819119 | MS.gene016075:CDS | 50.0% |
| GCTGGACCATCAACTTCAGC+TGG | - | chr1.4:7819049-7819068 | None:intergenic | 55.0% | |
| GTTGCTCCAGCTCCAACAAG+TGG | + | chr1.4:7819079-7819098 | MS.gene016075:CDS | 55.0% | |
| TGAGTCTAAGGGGGGGAAGT+AGG | + | chr1.4:7818993-7819012 | MS.gene016075:CDS | 55.0% | |
| ! | ACTTCAGCTGGTGAAGGTGC+TGG | - | chr1.4:7819037-7819056 | None:intergenic | 55.0% |
| ! | GTTGCACCACTTGTTGGAGC+TGG | - | chr1.4:7819088-7819107 | None:intergenic | 55.0% |
| !! | GCTGAAGTTGATGGTCCAGC+TGG | + | chr1.4:7819049-7819068 | MS.gene016075:CDS | 55.0% |
| GGAGCAACAGCTGAGCCAGC+TGG | - | chr1.4:7819067-7819086 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 7818237 | 7819171 | 7818237 | ID=MS.gene016075 |
| chr1.4 | mRNA | 7818237 | 7819171 | 7818237 | ID=MS.gene016075.t1;Parent=MS.gene016075 |
| chr1.4 | exon | 7818237 | 7818423 | 7818237 | ID=MS.gene016075.t1.exon1;Parent=MS.gene016075.t1 |
| chr1.4 | CDS | 7818237 | 7818423 | 7818237 | ID=cds.MS.gene016075.t1;Parent=MS.gene016075.t1 |
| chr1.4 | exon | 7818795 | 7819171 | 7818795 | ID=MS.gene016075.t1.exon2;Parent=MS.gene016075.t1 |
| chr1.4 | CDS | 7818795 | 7819171 | 7818795 | ID=cds.MS.gene016075.t1;Parent=MS.gene016075.t1 |
| Gene Sequence |
| Protein sequence |
