Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032997.t1 | XP_003609073.1 | 93.3 | 180 | 12 | 0 | 1 | 180 | 1 | 180 | 1.50E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032997.t1 | Q9SK27 | 34.9 | 169 | 96 | 5 | 1 | 166 | 3 | 160 | 1.2e-18 | 94.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032997.t1 | G7JR03 | 93.3 | 180 | 12 | 0 | 1 | 180 | 1 | 180 | 1.1e-89 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032997 | MS.gene016075 | PPI |
| MS.gene032997 | MS.gene32703 | PPI |
| MS.gene032997 | MS.gene051478 | PPI |
| MS.gene032997 | MS.gene80180 | PPI |
| MS.gene032997 | MS.gene42665 | PPI |
| MS.gene032997 | MS.gene80183 | PPI |
| MS.gene032997 | MS.gene014911 | PPI |
| MS.gene032997 | MS.gene33123 | PPI |
| MS.gene032997 | MS.gene51589 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032997.t1 | MTR_4g111640 | 93.333 | 180 | 12 | 0 | 1 | 180 | 1 | 180 | 3.43e-126 | 353 |
| MS.gene032997.t1 | MTR_4g077787 | 85.475 | 179 | 24 | 2 | 1 | 178 | 1 | 178 | 7.92e-113 | 319 |
| MS.gene032997.t1 | MTR_4g112310 | 97.692 | 130 | 3 | 0 | 51 | 180 | 1 | 130 | 1.52e-93 | 268 |
| MS.gene032997.t1 | MTR_6g022170 | 55.833 | 120 | 50 | 2 | 23 | 140 | 25 | 143 | 2.59e-43 | 142 |
| MS.gene032997.t1 | MTR_2g101300 | 38.356 | 146 | 85 | 3 | 12 | 155 | 5 | 147 | 7.86e-33 | 116 |
| MS.gene032997.t1 | MTR_3g105930 | 40.506 | 158 | 83 | 6 | 31 | 180 | 26 | 180 | 1.30e-31 | 113 |
| MS.gene032997.t1 | MTR_4g078410 | 42.647 | 136 | 70 | 4 | 31 | 164 | 24 | 153 | 6.54e-30 | 108 |
| MS.gene032997.t1 | MTR_2g090580 | 39.161 | 143 | 73 | 5 | 31 | 164 | 26 | 163 | 8.92e-30 | 108 |
| MS.gene032997.t1 | MTR_2g079030 | 37.821 | 156 | 82 | 3 | 14 | 158 | 7 | 158 | 1.04e-27 | 108 |
| MS.gene032997.t1 | MTR_8g463180 | 41.007 | 139 | 73 | 3 | 11 | 147 | 6 | 137 | 3.50e-27 | 104 |
| MS.gene032997.t1 | MTR_8g086360 | 35.811 | 148 | 85 | 4 | 8 | 153 | 3 | 142 | 2.08e-25 | 97.4 |
| MS.gene032997.t1 | MTR_8g095013 | 37.190 | 121 | 71 | 2 | 13 | 131 | 6 | 123 | 4.45e-25 | 99.0 |
| MS.gene032997.t1 | MTR_1g014120 | 36.424 | 151 | 76 | 6 | 7 | 146 | 4 | 145 | 5.27e-25 | 96.3 |
| MS.gene032997.t1 | MTR_8g094990 | 36.364 | 121 | 72 | 2 | 13 | 131 | 6 | 123 | 2.22e-23 | 94.4 |
| MS.gene032997.t1 | MTR_2g090575 | 37.398 | 123 | 68 | 3 | 12 | 132 | 8 | 123 | 6.87e-23 | 94.4 |
| MS.gene032997.t1 | MTR_7g090170 | 37.226 | 137 | 64 | 6 | 29 | 160 | 24 | 143 | 8.46e-21 | 84.3 |
| MS.gene032997.t1 | MTR_4g124280 | 36.735 | 147 | 68 | 5 | 32 | 157 | 25 | 167 | 1.43e-20 | 85.9 |
| MS.gene032997.t1 | MTR_1g077790 | 37.143 | 105 | 63 | 2 | 29 | 131 | 26 | 129 | 1.94e-20 | 84.7 |
| MS.gene032997.t1 | MTR_8g095020 | 39.806 | 103 | 55 | 3 | 32 | 132 | 25 | 122 | 2.65e-20 | 86.7 |
| MS.gene032997.t1 | MTR_4g081100 | 34.426 | 122 | 72 | 3 | 13 | 132 | 17 | 132 | 2.96e-20 | 84.7 |
| MS.gene032997.t1 | MTR_2g083250 | 38.095 | 105 | 61 | 3 | 31 | 132 | 25 | 128 | 2.32e-19 | 83.2 |
| MS.gene032997.t1 | MTR_5g006040 | 31.138 | 167 | 101 | 6 | 26 | 183 | 20 | 181 | 1.20e-18 | 79.7 |
| MS.gene032997.t1 | MTR_4g114870 | 37.255 | 102 | 60 | 2 | 32 | 131 | 191 | 290 | 2.85e-18 | 81.6 |
| MS.gene032997.t1 | MTR_4g114870 | 31.667 | 120 | 77 | 3 | 30 | 146 | 27 | 144 | 4.91e-15 | 72.4 |
| MS.gene032997.t1 | MTR_0334s0010 | 35.294 | 102 | 62 | 2 | 31 | 131 | 27 | 125 | 5.92e-17 | 75.5 |
| MS.gene032997.t1 | MTR_4g067200 | 30.709 | 127 | 82 | 3 | 14 | 136 | 10 | 134 | 9.57e-17 | 74.3 |
| MS.gene032997.t1 | MTR_4g066110 | 30.709 | 127 | 82 | 3 | 14 | 136 | 10 | 134 | 9.57e-17 | 74.3 |
| MS.gene032997.t1 | MTR_1g090420 | 31.250 | 144 | 93 | 3 | 11 | 151 | 7 | 147 | 1.78e-16 | 74.7 |
| MS.gene032997.t1 | MTR_6g083240 | 32.215 | 149 | 88 | 5 | 31 | 171 | 26 | 169 | 7.16e-16 | 72.0 |
| MS.gene032997.t1 | MTR_1g104800 | 34.906 | 106 | 63 | 2 | 32 | 135 | 25 | 126 | 9.28e-16 | 72.0 |
| MS.gene032997.t1 | MTR_2g088990 | 32.174 | 115 | 70 | 3 | 29 | 141 | 22 | 130 | 1.10e-14 | 70.1 |
| MS.gene032997.t1 | MTR_3g092170 | 28.834 | 163 | 88 | 3 | 13 | 151 | 6 | 164 | 2.22e-14 | 69.7 |
| MS.gene032997.t1 | MTR_3g099570 | 31.690 | 142 | 84 | 6 | 14 | 151 | 7 | 139 | 3.93e-14 | 67.8 |
| MS.gene032997.t1 | MTR_6g023760 | 36.538 | 104 | 58 | 3 | 30 | 131 | 24 | 121 | 1.23e-13 | 66.2 |
| MS.gene032997.t1 | MTR_3g099580 | 34.127 | 126 | 71 | 4 | 9 | 131 | 4 | 120 | 1.30e-13 | 66.2 |
| MS.gene032997.t1 | MTR_6g013420 | 28.859 | 149 | 93 | 5 | 4 | 146 | 8 | 149 | 2.39e-13 | 65.5 |
| MS.gene032997.t1 | MTR_4g130780 | 33.588 | 131 | 76 | 6 | 7 | 131 | 4 | 129 | 6.45e-12 | 61.6 |
| MS.gene032997.t1 | MTR_3g099540 | 32.039 | 103 | 63 | 3 | 30 | 131 | 25 | 121 | 8.80e-12 | 60.1 |
| MS.gene032997.t1 | MTR_2g025580 | 27.811 | 169 | 110 | 5 | 14 | 176 | 7 | 169 | 1.04e-11 | 60.8 |
| MS.gene032997.t1 | MTR_4g114830 | 30.952 | 126 | 80 | 5 | 26 | 146 | 22 | 145 | 1.57e-11 | 60.1 |
| MS.gene032997.t1 | MTR_3g099980 | 32.710 | 107 | 63 | 3 | 30 | 133 | 24 | 124 | 7.85e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032997.t1 | AT1G48940 | 48.851 | 174 | 71 | 4 | 11 | 173 | 10 | 176 | 3.35e-52 | 165 |
| MS.gene032997.t1 | AT3G18590 | 64.151 | 106 | 38 | 0 | 27 | 132 | 22 | 127 | 9.63e-50 | 159 |
| MS.gene032997.t1 | AT5G14345 | 43.704 | 135 | 70 | 2 | 12 | 146 | 1 | 129 | 8.41e-36 | 122 |
| MS.gene032997.t1 | AT1G79800 | 41.129 | 124 | 72 | 1 | 12 | 135 | 14 | 136 | 5.02e-31 | 112 |
| MS.gene032997.t1 | AT4G28365 | 38.194 | 144 | 78 | 3 | 12 | 148 | 9 | 148 | 1.73e-30 | 110 |
| MS.gene032997.t1 | AT4G31840 | 40.559 | 143 | 77 | 4 | 12 | 151 | 10 | 147 | 8.46e-30 | 108 |
| MS.gene032997.t1 | AT5G53870 | 35.632 | 174 | 92 | 5 | 1 | 164 | 1 | 164 | 7.82e-28 | 107 |
| MS.gene032997.t1 | AT5G53870 | 35.632 | 174 | 92 | 5 | 1 | 164 | 1 | 164 | 1.09e-27 | 107 |
| MS.gene032997.t1 | AT4G32490 | 36.429 | 140 | 83 | 2 | 28 | 165 | 27 | 162 | 2.16e-26 | 100 |
| MS.gene032997.t1 | AT2G25060 | 35.849 | 159 | 89 | 5 | 31 | 184 | 30 | 180 | 1.38e-25 | 97.8 |
| MS.gene032997.t1 | AT5G57920 | 40.945 | 127 | 65 | 5 | 25 | 143 | 13 | 137 | 4.25e-23 | 91.3 |
| MS.gene032997.t1 | AT4G30590 | 38.710 | 124 | 71 | 3 | 12 | 132 | 8 | 129 | 7.45e-23 | 90.9 |
| MS.gene032997.t1 | AT5G57920 | 43.810 | 105 | 54 | 3 | 31 | 132 | 22 | 124 | 1.48e-22 | 89.7 |
| MS.gene032997.t1 | AT5G57920 | 41.176 | 119 | 62 | 4 | 31 | 143 | 54 | 170 | 1.93e-22 | 90.5 |
| MS.gene032997.t1 | AT5G25090 | 41.667 | 120 | 64 | 4 | 17 | 133 | 12 | 128 | 7.92e-22 | 88.2 |
| MS.gene032997.t1 | AT4G27520 | 31.944 | 144 | 92 | 2 | 5 | 146 | 4 | 143 | 1.28e-20 | 87.8 |
| MS.gene032997.t1 | AT3G20570 | 36.538 | 104 | 61 | 2 | 31 | 132 | 29 | 129 | 3.92e-20 | 84.0 |
| MS.gene032997.t1 | AT1G64640 | 30.216 | 139 | 92 | 2 | 12 | 148 | 13 | 148 | 4.55e-20 | 83.6 |
| MS.gene032997.t1 | AT2G26720 | 36.585 | 123 | 71 | 3 | 12 | 132 | 9 | 126 | 7.18e-19 | 80.9 |
| MS.gene032997.t1 | AT2G31050 | 33.571 | 140 | 84 | 3 | 3 | 140 | 2 | 134 | 7.95e-19 | 80.5 |
| MS.gene032997.t1 | AT2G23990 | 34.483 | 145 | 81 | 7 | 12 | 151 | 11 | 146 | 1.49e-18 | 80.1 |
| MS.gene032997.t1 | AT2G32300 | 33.071 | 127 | 75 | 4 | 29 | 151 | 23 | 143 | 7.92e-18 | 79.0 |
| MS.gene032997.t1 | AT2G32300 | 33.333 | 126 | 74 | 4 | 30 | 151 | 54 | 173 | 1.32e-17 | 79.0 |
| MS.gene032997.t1 | AT3G60270 | 33.333 | 102 | 61 | 3 | 32 | 132 | 26 | 121 | 2.13e-14 | 68.6 |
| MS.gene032997.t1 | AT5G26330 | 29.851 | 134 | 80 | 4 | 1 | 132 | 1 | 122 | 2.38e-14 | 68.6 |
| MS.gene032997.t1 | AT2G23990 | 30.488 | 164 | 81 | 8 | 12 | 151 | 11 | 165 | 3.01e-14 | 68.9 |
| MS.gene032997.t1 | AT5G07475 | 30.657 | 137 | 87 | 3 | 12 | 146 | 10 | 140 | 1.07e-13 | 66.6 |
| MS.gene032997.t1 | AT2G27035 | 30.631 | 111 | 66 | 5 | 35 | 142 | 32 | 134 | 1.57e-11 | 60.5 |
| MS.gene032997.t1 | AT3G27200 | 33.663 | 101 | 59 | 3 | 34 | 132 | 28 | 122 | 8.49e-11 | 58.5 |
Find 40 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGTTGGTGGTAAAAT+TGG | 0.248593 | 8.4:+17316292 | MS.gene032997:CDS |
| TTTCTTTGCCTCCCAATCTT+TGG | 0.264284 | 8.4:+17316252 | MS.gene032997:CDS |
| TCATCACCATCCTTTGAGTT+AGG | 0.279895 | 8.4:-17316325 | None:intergenic |
| CTCTTTGCTTTGTCATTCCT+TGG | 0.289880 | 8.4:+17317127 | MS.gene032997:CDS |
| GGTGAGGGTGCTGTTGGTTC+AGG | 0.348949 | 8.4:-17317025 | None:intergenic |
| TACTTCATTAGTGGTGTTAG+TGG | 0.359912 | 8.4:+17316953 | MS.gene032997:CDS |
| GTGAATGCTGTGATAGTAAT+AGG | 0.385754 | 8.4:-17317103 | None:intergenic |
| TACAATTGATGACCAAAGAT+TGG | 0.408666 | 8.4:-17316264 | None:intergenic |
| CATCACCATCCTTTGAGTTA+GGG | 0.425498 | 8.4:-17316324 | None:intergenic |
| GGATTGTTCTACTTCATTAG+TGG | 0.430222 | 8.4:+17316944 | MS.gene032997:CDS |
| GTGATGAAATGTACAACAAA+TGG | 0.453312 | 8.4:+17316341 | MS.gene032997:CDS |
| GCAGCTTTAGAATGTGCTAT+TGG | 0.459227 | 8.4:-17317070 | None:intergenic |
| TCGACTCGTCCACTCTTCTT+CGG | 0.480946 | 8.4:+17316884 | MS.gene032997:CDS |
| GCAAAGGAAAAGTGGGTATG+AGG | 0.483957 | 8.4:-17316221 | None:intergenic |
| AGTTGGTGGTAAAATTGGTT+GGG | 0.488516 | 8.4:+17316297 | MS.gene032997:CDS |
| GCATTCTCATTTGCAGATTG+TGG | 0.492826 | 8.4:-17317046 | None:intergenic |
| ACAATTGATGACCAAAGATT+GGG | 0.505414 | 8.4:-17316263 | None:intergenic |
| GATTGTGGTGAGGGTGCTGT+TGG | 0.512152 | 8.4:-17317031 | None:intergenic |
| AATTGTACTGAATTTGAAGT+TGG | 0.513642 | 8.4:+17316280 | MS.gene032997:CDS |
| TCATTTGCAGATTGTGGTGA+GGG | 0.517209 | 8.4:-17317040 | None:intergenic |
| CCATTGTTTCCGAAGAAGAG+TGG | 0.518696 | 8.4:-17316893 | None:intergenic |
| CTCATTTGCAGATTGTGGTG+AGG | 0.521847 | 8.4:-17317041 | None:intergenic |
| ATAATCAAGCAAAGGAAAAG+TGG | 0.531969 | 8.4:-17316229 | None:intergenic |
| TGTACTGAATTTGAAGTTGG+TGG | 0.533474 | 8.4:+17316283 | MS.gene032997:CDS |
| CTAATGAAGTAGAACAATCC+TGG | 0.545709 | 8.4:-17316941 | None:intergenic |
| AAGTTGGTGGTAAAATTGGT+TGG | 0.549766 | 8.4:+17316296 | MS.gene032997:CDS |
| TGATGAAATGTACAACAAAT+GGG | 0.552171 | 8.4:+17316342 | MS.gene032997:CDS |
| TAATCAAGCAAAGGAAAAGT+GGG | 0.571116 | 8.4:-17316228 | None:intergenic |
| CCACTCTTCTTCGGAAACAA+TGG | 0.572032 | 8.4:+17316893 | MS.gene032997:CDS |
| CGAGAAAGATTCAGTGATGG+TGG | 0.591369 | 8.4:+17316832 | MS.gene032997:CDS |
| CTTCGGAAACAATGGCAACA+CGG | 0.597439 | 8.4:+17316901 | MS.gene032997:CDS |
| TGGTGGTAAAATTGGTTGGG+TGG | 0.599284 | 8.4:+17316300 | MS.gene032997:CDS |
| GTTAGTGGTCATTGTACAAG+AGG | 0.601760 | 8.4:+17316968 | MS.gene032997:CDS |
| CAAAGAAAATAATCAAGCAA+AGG | 0.602288 | 8.4:-17316237 | None:intergenic |
| CAAGCATAAATATCATGCCA+AGG | 0.602952 | 8.4:-17317144 | None:intergenic |
| TTGGGTGGTCCCTAACTCAA+AGG | 0.612930 | 8.4:+17316315 | MS.gene032997:CDS |
| GTATGAGGAAGCTTTGAAGA+TGG | 0.616797 | 8.4:-17316206 | None:intergenic |
| GTGGTCCCTAACTCAAAGGA+TGG | 0.629713 | 8.4:+17316319 | MS.gene032997:CDS |
| ATTGATGACCAAAGATTGGG+AGG | 0.657515 | 8.4:-17316260 | None:intergenic |
| GTACGAGAAAGATTCAGTGA+TGG | 0.658831 | 8.4:+17316829 | MS.gene032997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACACACATATTTAAAAA+TGG | - | chr8.4:17316591-17316610 | None:intergenic | 15.0% |
| !! | ACAAAAGTTATATAACAAAA+AGG | - | chr8.4:17316785-17316804 | None:intergenic | 15.0% |
| !! | TTTAAAAATGGTAACATAAA+TGG | - | chr8.4:17316579-17316598 | None:intergenic | 15.0% |
| !!! | ATCACAAATTTTTTAGAAAA+TGG | - | chr8.4:17316656-17316675 | None:intergenic | 15.0% |
| !!! | CTTAAAATTAAATCTGTTTT+GGG | - | chr8.4:17316420-17316439 | None:intergenic | 15.0% |
| !!! | TCTTAAAATTAAATCTGTTT+TGG | - | chr8.4:17316421-17316440 | None:intergenic | 15.0% |
| !!! | TTTCTAAAAAGAAATGAATA+AGG | + | chr8.4:17316481-17316500 | MS.gene032997:intron | 15.0% |
| !!! | ATCAATTTTGAATCTGTTTT+GGG | - | chr8.4:17316371-17316390 | None:intergenic | 20.0% |
| !!! | TAACTTTTGTTTTGAACTTT+TGG | + | chr8.4:17316795-17316814 | MS.gene032997:intron | 20.0% |
| ! | AATAAATGTAATCTTTGTCG+TGG | + | chr8.4:17316758-17316777 | MS.gene032997:intron | 25.0% |
| ! | CAAAGAAAATAATCAAGCAA+AGG | - | chr8.4:17316240-17316259 | None:intergenic | 25.0% |
| ! | TGATGAAATGTACAACAAAT+GGG | + | chr8.4:17316342-17316361 | MS.gene032997:CDS | 25.0% |
| !! | AAAAATGATCATCAAGGTTT+TGG | + | chr8.4:17316994-17317013 | MS.gene032997:CDS | 25.0% |
| !! | AATTGTACTGAATTTGAAGT+TGG | + | chr8.4:17316280-17316299 | MS.gene032997:CDS | 25.0% |
| !! | ATATCAATTACCAAAGCATT+GGG | - | chr8.4:17316619-17316638 | None:intergenic | 25.0% |
| !! | CATCAATTTTGAATCTGTTT+TGG | - | chr8.4:17316372-17316391 | None:intergenic | 25.0% |
| AGGACAAAAAATGATCATCA+AGG | + | chr8.4:17316988-17317007 | MS.gene032997:CDS | 30.0% | |
| ATAATCAAGCAAAGGAAAAG+TGG | - | chr8.4:17316232-17316251 | None:intergenic | 30.0% | |
| GATATCAATTACCAAAGCAT+TGG | - | chr8.4:17316620-17316639 | None:intergenic | 30.0% | |
| GTGATGAAATGTACAACAAA+TGG | + | chr8.4:17316341-17316360 | MS.gene032997:CDS | 30.0% | |
| TAATCAAGCAAAGGAAAAGT+GGG | - | chr8.4:17316231-17316250 | None:intergenic | 30.0% | |
| ! | ACAATTGATGACCAAAGATT+GGG | - | chr8.4:17316266-17316285 | None:intergenic | 30.0% |
| ! | GTTTTTATATCCCAATGCTT+TGG | + | chr8.4:17316606-17316625 | MS.gene032997:intron | 30.0% |
| ! | TACAATTGATGACCAAAGAT+TGG | - | chr8.4:17316267-17316286 | None:intergenic | 30.0% |
| !! | CATTTATACCTTCACTTTTG+TGG | - | chr8.4:17316510-17316529 | None:intergenic | 30.0% |
| !! | TTTGAAGTTGGTGGTAAAAT+TGG | + | chr8.4:17316292-17316311 | MS.gene032997:CDS | 30.0% |
| CAAGCATAAATATCATGCCA+AGG | - | chr8.4:17317147-17317166 | None:intergenic | 35.0% | |
| CTAATGAAGTAGAACAATCC+TGG | - | chr8.4:17316944-17316963 | None:intergenic | 35.0% | |
| GGATTGTTCTACTTCATTAG+TGG | + | chr8.4:17316944-17316963 | MS.gene032997:CDS | 35.0% | |
| GTGAATGCTGTGATAGTAAT+AGG | - | chr8.4:17317106-17317125 | None:intergenic | 35.0% | |
| ! | GTTTTCAAATTTGAACGACC+AGG | + | chr8.4:17316923-17316942 | MS.gene032997:CDS | 35.0% |
| ! | TACTTCATTAGTGGTGTTAG+TGG | + | chr8.4:17316953-17316972 | MS.gene032997:CDS | 35.0% |
| ! | TGTACTGAATTTGAAGTTGG+TGG | + | chr8.4:17316283-17316302 | MS.gene032997:CDS | 35.0% |
| !! | AAGTTGGTGGTAAAATTGGT+TGG | + | chr8.4:17316296-17316315 | MS.gene032997:CDS | 35.0% |
| !! | AGTTGGTGGTAAAATTGGTT+GGG | + | chr8.4:17316297-17316316 | MS.gene032997:CDS | 35.0% |
| !!! | AAATCTGTTTTGGGAAGAAG+TGG | - | chr8.4:17316411-17316430 | None:intergenic | 35.0% |
| CTCTTTGCTTTGTCATTCCT+TGG | + | chr8.4:17317127-17317146 | MS.gene032997:CDS | 40.0% | |
| GCATTCTCATTTGCAGATTG+TGG | - | chr8.4:17317049-17317068 | None:intergenic | 40.0% | |
| GTACGAGAAAGATTCAGTGA+TGG | + | chr8.4:17316829-17316848 | MS.gene032997:CDS | 40.0% | |
| GTTAGTGGTCATTGTACAAG+AGG | + | chr8.4:17316968-17316987 | MS.gene032997:CDS | 40.0% | |
| TAAGGTCACCACAAAAGTGA+AGG | + | chr8.4:17316499-17316518 | MS.gene032997:intron | 40.0% | |
| TCATTTGCAGATTGTGGTGA+GGG | - | chr8.4:17317043-17317062 | None:intergenic | 40.0% | |
| TTTCTTTGCCTCCCAATCTT+TGG | + | chr8.4:17316252-17316271 | MS.gene032997:CDS | 40.0% | |
| ! | ATTGATGACCAAAGATTGGG+AGG | - | chr8.4:17316263-17316282 | None:intergenic | 40.0% |
| ! | CATCACCATCCTTTGAGTTA+GGG | - | chr8.4:17316327-17316346 | None:intergenic | 40.0% |
| ! | TCATCACCATCCTTTGAGTT+AGG | - | chr8.4:17316328-17316347 | None:intergenic | 40.0% |
| !! | GCAGCTTTAGAATGTGCTAT+TGG | - | chr8.4:17317073-17317092 | None:intergenic | 40.0% |
| !! | GTATGAGGAAGCTTTGAAGA+TGG | - | chr8.4:17316209-17316228 | None:intergenic | 40.0% |
| CCACTCTTCTTCGGAAACAA+TGG | + | chr8.4:17316893-17316912 | MS.gene032997:CDS | 45.0% | |
| CCATTGTTTCCGAAGAAGAG+TGG | - | chr8.4:17316896-17316915 | None:intergenic | 45.0% | |
| CGAGAAAGATTCAGTGATGG+TGG | + | chr8.4:17316832-17316851 | MS.gene032997:CDS | 45.0% | |
| CTCATTTGCAGATTGTGGTG+AGG | - | chr8.4:17317044-17317063 | None:intergenic | 45.0% | |
| CTTCGGAAACAATGGCAACA+CGG | + | chr8.4:17316901-17316920 | MS.gene032997:CDS | 45.0% | |
| GCAAAGGAAAAGTGGGTATG+AGG | - | chr8.4:17316224-17316243 | None:intergenic | 45.0% | |
| TGGTGGTAAAATTGGTTGGG+TGG | + | chr8.4:17316300-17316319 | MS.gene032997:CDS | 45.0% | |
| !!! | ATGATATATTTTATTTTTAA+AGG | + | chr8.4:17316531-17316550 | MS.gene032997:intron | 5.0% |
| !!! | TGATATATTTTATTTTTAAA+GGG | + | chr8.4:17316532-17316551 | MS.gene032997:intron | 5.0% |
| GTGGTCCCTAACTCAAAGGA+TGG | + | chr8.4:17316319-17316338 | MS.gene032997:CDS | 50.0% | |
| TTGGGTGGTCCCTAACTCAA+AGG | + | chr8.4:17316315-17316334 | MS.gene032997:CDS | 50.0% | |
| ! | TCGACTCGTCCACTCTTCTT+CGG | + | chr8.4:17316884-17316903 | MS.gene032997:CDS | 50.0% |
| !! | GATTGTGGTGAGGGTGCTGT+TGG | - | chr8.4:17317034-17317053 | None:intergenic | 55.0% |
| !! | GGTGAGGGTGCTGTTGGTTC+AGG | - | chr8.4:17317028-17317047 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17316199 | 17317195 | 17316199 | ID=MS.gene032997 |
| chr8.4 | mRNA | 17316199 | 17317195 | 17316199 | ID=MS.gene032997.t1;Parent=MS.gene032997 |
| chr8.4 | exon | 17316199 | 17316400 | 17316199 | ID=MS.gene032997.t1.exon1;Parent=MS.gene032997.t1 |
| chr8.4 | CDS | 17316199 | 17316400 | 17316199 | ID=cds.MS.gene032997.t1;Parent=MS.gene032997.t1 |
| chr8.4 | exon | 17316822 | 17317195 | 17316822 | ID=MS.gene032997.t1.exon2;Parent=MS.gene032997.t1 |
| chr8.4 | CDS | 17316822 | 17317195 | 17316822 | ID=cds.MS.gene032997.t1;Parent=MS.gene032997.t1 |
| Gene Sequence |
| Protein sequence |
