Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006553.t1 | XP_013456628.1 | 88.8 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 1.50E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006553.t1 | Q9SK27 | 39.3 | 145 | 74 | 5 | 2 | 142 | 9 | 143 | 2.2e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006553.t1 | A0A072ULK7 | 88.8 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 1.1e-83 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006553 | MS.gene051478 | PPI |
| MS.gene006553 | MS.gene80180 | PPI |
| MS.gene006553 | MS.gene42665 | PPI |
| MS.gene006553 | MS.gene80183 | PPI |
| MS.gene006553 | MS.gene014911 | PPI |
| MS.gene006553 | MS.gene32703 | PPI |
| MS.gene006553 | MS.gene33123 | PPI |
| MS.gene006553 | MS.gene51589 | PPI |
| MS.gene006553 | MS.gene016075 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006553.t1 | MTR_4g077787 | 92.135 | 178 | 14 | 0 | 1 | 178 | 1 | 178 | 2.23e-123 | 345 |
| MS.gene006553.t1 | MTR_4g111640 | 84.615 | 182 | 26 | 2 | 1 | 181 | 1 | 181 | 1.40e-114 | 323 |
| MS.gene006553.t1 | MTR_4g112310 | 88.636 | 132 | 13 | 2 | 51 | 181 | 1 | 131 | 4.99e-83 | 241 |
| MS.gene006553.t1 | MTR_6g022170 | 59.091 | 110 | 44 | 1 | 23 | 132 | 25 | 133 | 1.22e-44 | 145 |
| MS.gene006553.t1 | MTR_2g101300 | 37.584 | 149 | 86 | 3 | 15 | 157 | 8 | 155 | 2.13e-33 | 117 |
| MS.gene006553.t1 | MTR_4g078410 | 42.636 | 129 | 68 | 2 | 29 | 155 | 22 | 146 | 2.20e-30 | 109 |
| MS.gene006553.t1 | MTR_3g105930 | 39.130 | 161 | 83 | 6 | 29 | 179 | 24 | 179 | 3.46e-30 | 108 |
| MS.gene006553.t1 | MTR_2g090580 | 37.162 | 148 | 79 | 4 | 13 | 150 | 8 | 151 | 1.93e-29 | 107 |
| MS.gene006553.t1 | MTR_1g014120 | 39.189 | 148 | 75 | 6 | 7 | 145 | 4 | 145 | 1.66e-28 | 105 |
| MS.gene006553.t1 | MTR_8g463180 | 39.286 | 140 | 71 | 5 | 12 | 145 | 5 | 136 | 3.99e-27 | 104 |
| MS.gene006553.t1 | MTR_2g079030 | 38.194 | 144 | 83 | 2 | 14 | 155 | 7 | 146 | 1.60e-25 | 102 |
| MS.gene006553.t1 | MTR_8g086360 | 34.266 | 143 | 85 | 3 | 12 | 152 | 7 | 142 | 2.29e-25 | 97.1 |
| MS.gene006553.t1 | MTR_8g095013 | 36.885 | 122 | 69 | 3 | 12 | 131 | 8 | 123 | 1.57e-23 | 94.7 |
| MS.gene006553.t1 | MTR_4g081100 | 39.423 | 104 | 59 | 2 | 31 | 132 | 31 | 132 | 5.01e-22 | 89.0 |
| MS.gene006553.t1 | MTR_2g090575 | 35.714 | 126 | 72 | 3 | 12 | 132 | 2 | 123 | 5.15e-22 | 91.3 |
| MS.gene006553.t1 | MTR_8g094990 | 36.066 | 122 | 70 | 3 | 12 | 131 | 8 | 123 | 9.49e-22 | 89.4 |
| MS.gene006553.t1 | MTR_4g124280 | 34.161 | 161 | 78 | 4 | 32 | 170 | 25 | 179 | 9.89e-22 | 88.6 |
| MS.gene006553.t1 | MTR_1g077790 | 35.652 | 115 | 71 | 2 | 29 | 141 | 26 | 139 | 1.20e-21 | 87.4 |
| MS.gene006553.t1 | MTR_7g090170 | 37.778 | 135 | 62 | 6 | 29 | 158 | 24 | 141 | 2.92e-21 | 85.1 |
| MS.gene006553.t1 | MTR_8g095020 | 40.777 | 103 | 54 | 3 | 32 | 132 | 25 | 122 | 1.30e-20 | 87.0 |
| MS.gene006553.t1 | MTR_2g083250 | 39.048 | 105 | 60 | 3 | 31 | 132 | 25 | 128 | 6.45e-20 | 84.3 |
| MS.gene006553.t1 | MTR_5g006040 | 31.944 | 144 | 90 | 3 | 14 | 153 | 8 | 147 | 1.63e-19 | 81.6 |
| MS.gene006553.t1 | MTR_1g090420 | 29.714 | 175 | 99 | 4 | 16 | 169 | 8 | 179 | 2.48e-18 | 79.3 |
| MS.gene006553.t1 | MTR_3g099570 | 31.507 | 146 | 90 | 4 | 7 | 150 | 2 | 139 | 1.75e-17 | 76.3 |
| MS.gene006553.t1 | MTR_4g114870 | 36.275 | 102 | 61 | 2 | 32 | 131 | 191 | 290 | 2.60e-17 | 78.6 |
| MS.gene006553.t1 | MTR_4g114870 | 30.714 | 140 | 88 | 4 | 13 | 145 | 7 | 144 | 4.72e-16 | 75.1 |
| MS.gene006553.t1 | MTR_1g104800 | 34.906 | 106 | 63 | 2 | 32 | 135 | 25 | 126 | 1.08e-16 | 74.3 |
| MS.gene006553.t1 | MTR_4g130780 | 32.374 | 139 | 84 | 5 | 8 | 140 | 4 | 138 | 3.47e-15 | 70.1 |
| MS.gene006553.t1 | MTR_3g099580 | 34.783 | 115 | 62 | 3 | 24 | 131 | 12 | 120 | 3.98e-15 | 70.1 |
| MS.gene006553.t1 | MTR_3g092170 | 32.540 | 126 | 70 | 4 | 12 | 129 | 2 | 120 | 4.52e-15 | 71.6 |
| MS.gene006553.t1 | MTR_4g067200 | 29.688 | 128 | 84 | 3 | 13 | 136 | 9 | 134 | 4.88e-15 | 69.7 |
| MS.gene006553.t1 | MTR_4g066110 | 29.688 | 128 | 84 | 3 | 13 | 136 | 9 | 134 | 4.88e-15 | 69.7 |
| MS.gene006553.t1 | MTR_6g023760 | 37.500 | 104 | 57 | 3 | 30 | 131 | 24 | 121 | 5.42e-15 | 69.7 |
| MS.gene006553.t1 | MTR_0334s0010 | 30.833 | 120 | 79 | 2 | 13 | 131 | 9 | 125 | 5.97e-15 | 70.1 |
| MS.gene006553.t1 | MTR_6g083240 | 30.519 | 154 | 95 | 5 | 14 | 157 | 8 | 159 | 1.11e-14 | 68.6 |
| MS.gene006553.t1 | MTR_2g088990 | 33.028 | 109 | 65 | 3 | 29 | 135 | 22 | 124 | 2.92e-14 | 68.6 |
| MS.gene006553.t1 | MTR_3g099540 | 29.688 | 128 | 70 | 4 | 11 | 131 | 7 | 121 | 1.08e-13 | 65.1 |
| MS.gene006553.t1 | MTR_3g099980 | 33.333 | 126 | 74 | 4 | 11 | 133 | 6 | 124 | 2.12e-13 | 66.2 |
| MS.gene006553.t1 | MTR_3g099680 | 33.333 | 126 | 74 | 4 | 11 | 133 | 6 | 124 | 2.16e-13 | 66.2 |
| MS.gene006553.t1 | MTR_6g013420 | 30.137 | 146 | 88 | 5 | 7 | 145 | 10 | 148 | 2.30e-13 | 65.1 |
| MS.gene006553.t1 | MTR_8g099220 | 28.000 | 125 | 84 | 3 | 10 | 131 | 6 | 127 | 6.22e-13 | 62.8 |
| MS.gene006553.t1 | MTR_8g007020 | 29.730 | 148 | 80 | 6 | 29 | 158 | 21 | 162 | 7.30e-12 | 61.2 |
| MS.gene006553.t1 | MTR_7g086100 | 32.031 | 128 | 78 | 3 | 7 | 132 | 2 | 122 | 1.73e-11 | 61.2 |
| MS.gene006553.t1 | MTR_2g025580 | 26.846 | 149 | 96 | 5 | 34 | 175 | 29 | 171 | 3.01e-11 | 59.3 |
| MS.gene006553.t1 | MTR_1g090190 | 28.906 | 128 | 80 | 3 | 25 | 147 | 16 | 137 | 3.19e-11 | 59.7 |
| MS.gene006553.t1 | MTR_4g130800 | 37.209 | 86 | 51 | 2 | 54 | 137 | 50 | 134 | 3.47e-11 | 60.5 |
| MS.gene006553.t1 | MTR_4g130800 | 37.209 | 86 | 51 | 2 | 54 | 137 | 49 | 133 | 4.19e-11 | 60.5 |
| MS.gene006553.t1 | MTR_8g007035 | 33.981 | 103 | 61 | 2 | 30 | 131 | 22 | 118 | 5.14e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006553.t1 | AT1G48940 | 47.093 | 172 | 77 | 3 | 11 | 173 | 10 | 176 | 3.01e-56 | 175 |
| MS.gene006553.t1 | AT3G18590 | 58.400 | 125 | 52 | 0 | 8 | 132 | 3 | 127 | 6.99e-54 | 169 |
| MS.gene006553.t1 | AT5G14345 | 44.262 | 122 | 66 | 2 | 25 | 145 | 9 | 129 | 7.17e-34 | 117 |
| MS.gene006553.t1 | AT1G79800 | 40.800 | 125 | 73 | 1 | 11 | 135 | 13 | 136 | 3.85e-32 | 114 |
| MS.gene006553.t1 | AT4G28365 | 35.948 | 153 | 92 | 2 | 12 | 162 | 9 | 157 | 1.95e-30 | 110 |
| MS.gene006553.t1 | AT4G31840 | 37.736 | 159 | 92 | 5 | 7 | 160 | 2 | 158 | 6.26e-29 | 105 |
| MS.gene006553.t1 | AT4G32490 | 44.860 | 107 | 53 | 2 | 28 | 132 | 27 | 129 | 4.84e-27 | 102 |
| MS.gene006553.t1 | AT4G30590 | 41.129 | 124 | 68 | 3 | 12 | 132 | 8 | 129 | 1.56e-26 | 100 |
| MS.gene006553.t1 | AT5G53870 | 35.227 | 176 | 96 | 6 | 1 | 167 | 1 | 167 | 2.38e-26 | 103 |
| MS.gene006553.t1 | AT5G53870 | 35.227 | 176 | 96 | 6 | 1 | 167 | 1 | 167 | 2.77e-26 | 103 |
| MS.gene006553.t1 | AT5G57920 | 39.552 | 134 | 70 | 5 | 18 | 142 | 6 | 137 | 1.80e-25 | 97.1 |
| MS.gene006553.t1 | AT2G25060 | 40.152 | 132 | 72 | 5 | 24 | 150 | 23 | 152 | 1.97e-25 | 97.1 |
| MS.gene006553.t1 | AT5G57920 | 41.176 | 119 | 61 | 4 | 31 | 142 | 22 | 138 | 8.09e-25 | 95.5 |
| MS.gene006553.t1 | AT5G57920 | 41.176 | 119 | 61 | 4 | 31 | 142 | 54 | 170 | 1.05e-24 | 95.9 |
| MS.gene006553.t1 | AT4G27520 | 32.298 | 161 | 97 | 4 | 5 | 162 | 4 | 155 | 2.48e-22 | 92.4 |
| MS.gene006553.t1 | AT3G20570 | 33.333 | 138 | 75 | 4 | 13 | 148 | 15 | 137 | 2.12e-21 | 87.0 |
| MS.gene006553.t1 | AT5G25090 | 39.837 | 123 | 62 | 6 | 16 | 132 | 11 | 127 | 7.66e-21 | 85.1 |
| MS.gene006553.t1 | AT2G31050 | 36.029 | 136 | 74 | 4 | 11 | 142 | 12 | 138 | 1.06e-20 | 85.1 |
| MS.gene006553.t1 | AT2G23990 | 36.296 | 135 | 75 | 5 | 1 | 131 | 1 | 128 | 5.36e-20 | 83.6 |
| MS.gene006553.t1 | AT1G64640 | 33.333 | 108 | 65 | 3 | 27 | 131 | 28 | 131 | 1.86e-19 | 81.6 |
| MS.gene006553.t1 | AT2G32300 | 30.405 | 148 | 92 | 4 | 8 | 150 | 2 | 143 | 2.55e-19 | 82.8 |
| MS.gene006553.t1 | AT2G32300 | 30.405 | 148 | 92 | 4 | 8 | 150 | 32 | 173 | 4.75e-19 | 82.4 |
| MS.gene006553.t1 | AT2G26720 | 34.559 | 136 | 76 | 4 | 11 | 142 | 12 | 138 | 7.95e-19 | 80.5 |
| MS.gene006553.t1 | AT5G26330 | 35.922 | 103 | 60 | 2 | 32 | 132 | 24 | 122 | 6.28e-16 | 72.4 |
| MS.gene006553.t1 | AT2G23990 | 32.468 | 154 | 74 | 6 | 1 | 131 | 1 | 147 | 7.94e-16 | 72.8 |
| MS.gene006553.t1 | AT3G60270 | 33.333 | 102 | 61 | 2 | 32 | 132 | 26 | 121 | 1.79e-15 | 71.2 |
| MS.gene006553.t1 | AT5G07475 | 30.667 | 150 | 92 | 5 | 14 | 158 | 13 | 155 | 2.10e-14 | 68.6 |
| MS.gene006553.t1 | AT1G45063 | 32.456 | 114 | 66 | 3 | 25 | 132 | 19 | 127 | 2.54e-12 | 63.9 |
| MS.gene006553.t1 | AT1G45063 | 33.981 | 103 | 61 | 3 | 32 | 131 | 149 | 247 | 2.94e-12 | 63.5 |
| MS.gene006553.t1 | AT1G72230 | 30.693 | 101 | 69 | 1 | 52 | 151 | 37 | 137 | 3.08e-12 | 62.4 |
| MS.gene006553.t1 | AT1G45063 | 32.143 | 112 | 68 | 2 | 24 | 132 | 21 | 127 | 4.50e-12 | 63.9 |
| MS.gene006553.t1 | AT1G45063 | 33.981 | 103 | 61 | 3 | 32 | 131 | 149 | 247 | 5.72e-12 | 63.5 |
| MS.gene006553.t1 | AT3G27200 | 33.663 | 101 | 59 | 3 | 34 | 132 | 28 | 122 | 2.31e-11 | 59.7 |
| MS.gene006553.t1 | AT3G17675 | 30.645 | 124 | 77 | 3 | 11 | 131 | 10 | 127 | 2.55e-11 | 58.9 |
Find 27 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATGATCATCAAGGTTT+TGG | 0.254697 | 4.4:-32862616 | MS.gene006553:CDS |
| TCACAAAATAGATTCAAAAT+TGG | 0.280437 | 4.4:-32863181 | MS.gene006553:CDS |
| TGTGGTGCTGGTGCTGTAAT+TGG | 0.293215 | 4.4:+32862585 | None:intergenic |
| CTCTTTACTTTGTCATTCCT+TGG | 0.308362 | 4.4:-32862483 | MS.gene006553:CDS |
| TACTTCATCAGTGGAGTTAG+TGG | 0.390509 | 4.4:-32862657 | MS.gene006553:CDS |
| GTGCATGATGTGATAGTAAT+AGG | 0.401733 | 4.4:+32862507 | None:intergenic |
| TCATCTTTGTCCTTTGAGTC+AGG | 0.404812 | 4.4:+32863223 | None:intergenic |
| TCATTTGCAGATTGTGGTGC+TGG | 0.425648 | 4.4:+32862573 | None:intergenic |
| TTTGAAGTTGGTGGTAGAAT+TGG | 0.429149 | 4.4:-32863256 | MS.gene006553:CDS |
| CTGATGAAGTAGAACATTCC+TGG | 0.429651 | 4.4:+32862669 | None:intergenic |
| GCATTAGAATGTTGTGCTAT+TGG | 0.440808 | 4.4:+32862543 | None:intergenic |
| AGTTGGTGGTAGAATTGGTT+GGG | 0.458216 | 4.4:-32863251 | MS.gene006553:CDS |
| GCATTCTCATTTGCAGATTG+TGG | 0.492826 | 4.4:+32862567 | None:intergenic |
| AACTGTACTGAATTTGAAGT+TGG | 0.536560 | 4.4:-32863268 | MS.gene006553:CDS |
| TTGGGTTGTGCCTGACTCAA+AGG | 0.571720 | 4.4:-32863233 | MS.gene006553:CDS |
| AAGTTGGTGGTAGAATTGGT+TGG | 0.575738 | 4.4:-32863252 | MS.gene006553:CDS |
| AGGCCAGAAAATGATCATCA+AGG | 0.582370 | 4.4:-32862622 | MS.gene006553:CDS |
| GTGTGAGGCAGCTTTGAAGA+TGG | 0.582821 | 4.4:+32863342 | None:intergenic |
| TGTACTGAATTTGAAGTTGG+TGG | 0.583292 | 4.4:-32863265 | MS.gene006553:CDS |
| AAGATGATATGTACAACCGA+TGG | 0.592618 | 4.4:-32863207 | MS.gene006553:CDS |
| GTTAGTGGTCATTGTACAAG+AGG | 0.592736 | 4.4:-32862642 | MS.gene006553:CDS |
| TTCAAGCATAAATCATGCCA+AGG | 0.596027 | 4.4:+32862466 | None:intergenic |
| GCAAAGTAAAAGTGAGTGTG+AGG | 0.606729 | 4.4:+32863327 | None:intergenic |
| AGATGATATGTACAACCGAT+GGG | 0.614363 | 4.4:-32863206 | MS.gene006553:CDS |
| TGAGAAAGATTCAGTGATGG+TGG | 0.639612 | 4.4:-32862778 | MS.gene006553:CDS |
| GGAATGTTCTACTTCATCAG+TGG | 0.644882 | 4.4:-32862666 | MS.gene006553:CDS |
| GTATGAGAAAGATTCAGTGA+TGG | 0.665783 | 4.4:-32862781 | MS.gene006553:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTCATTTATAAAAATAAA+TGG | + | chr4.4:32862891-32862910 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATAAATGAAGA+TGG | - | chr4.4:32862891-32862910 | MS.gene006553:intron | 10.0% |
| !! | AAAATTAAATTGGTAAGAAA+TGG | + | chr4.4:32862679-32862698 | None:intergenic | 15.0% |
| !! | TATATATGGCAAAATTAAAT+TGG | + | chr4.4:32862689-32862708 | None:intergenic | 15.0% |
| !! | ACATATTACTCCTAAAAAAA+TGG | + | chr4.4:32862814-32862833 | None:intergenic | 20.0% |
| !! | TCACAAAATAGATTCAAAAT+TGG | - | chr4.4:32862635-32862654 | MS.gene006553:CDS | 20.0% |
| !!! | ATATATGTCACCATTTTTTT+AGG | - | chr4.4:32862801-32862820 | MS.gene006553:intron | 20.0% |
| !!! | ATATCCATTACTAAAGTTTT+GGG | + | chr4.4:32862854-32862873 | None:intergenic | 20.0% |
| !!! | TATATCCATTACTAAAGTTT+TGG | + | chr4.4:32862855-32862874 | None:intergenic | 20.0% |
| ! | AATTCAGAACCTTTATATGT+CGG | + | chr4.4:32862980-32862999 | None:intergenic | 25.0% |
| ! | ATATCCCAAAACTTTAGTAA+TGG | - | chr4.4:32862847-32862866 | MS.gene006553:intron | 25.0% |
| ! | ATGTCTATTCTTAAAGTTGT+TGG | - | chr4.4:32862764-32862783 | MS.gene006553:CDS | 25.0% |
| ! | TGACATACATAGCATATATA+TGG | + | chr4.4:32862703-32862722 | None:intergenic | 25.0% |
| ATATGTCGGATTCTACATAT+TGG | + | chr4.4:32862966-32862985 | None:intergenic | 30.0% | |
| ATGTAGAATCCGACATATAA+AGG | - | chr4.4:32862968-32862987 | MS.gene006553:intron | 30.0% | |
| CCATTGTTGCCAAAAAATAA+TGG | + | chr4.4:32863102-32863121 | None:intergenic | 30.0% | |
| TTGGTAAGAAATGGTACTTA+CGG | + | chr4.4:32862670-32862689 | None:intergenic | 30.0% | |
| ! | AACTGTACTGAATTTGAAGT+TGG | - | chr4.4:32862548-32862567 | MS.gene006553:CDS | 30.0% |
| ! | GAAAATGATCATCAAGGTTT+TGG | - | chr4.4:32863200-32863219 | MS.gene006553:CDS | 30.0% |
| !! | AAACCTTGATGATCATTTTC+TGG | + | chr4.4:32863200-32863219 | None:intergenic | 30.0% |
| !! | ACAGTTGATGACCAAAAATT+GGG | + | chr4.4:32862534-32862553 | None:intergenic | 30.0% |
| !! | TACAGTTGATGACCAAAAAT+TGG | + | chr4.4:32862535-32862554 | None:intergenic | 30.0% |
| !!! | CCATTATTTTTTGGCAACAA+TGG | - | chr4.4:32863099-32863118 | MS.gene006553:intron | 30.0% |
| AAGATGATATGTACAACCGA+TGG | - | chr4.4:32862609-32862628 | MS.gene006553:CDS | 35.0% | |
| AGATGATATGTACAACCGAT+GGG | - | chr4.4:32862610-32862629 | MS.gene006553:CDS | 35.0% | |
| CTCTTTACTTTGTCATTCCT+TGG | - | chr4.4:32863333-32863352 | MS.gene006553:CDS | 35.0% | |
| GCATTAGAATGTTGTGCTAT+TGG | + | chr4.4:32863276-32863295 | None:intergenic | 35.0% | |
| GTATGAGAAAGATTCAGTGA+TGG | - | chr4.4:32863035-32863054 | MS.gene006553:intron | 35.0% | |
| GTGCATGATGTGATAGTAAT+AGG | + | chr4.4:32863312-32863331 | None:intergenic | 35.0% | |
| TAAGAAATGGTACTTACGGA+CGG | + | chr4.4:32862666-32862685 | None:intergenic | 35.0% | |
| ! | ATCTATTTTGTGAAGCCCAT+CGG | + | chr4.4:32862628-32862647 | None:intergenic | 35.0% |
| ! | TGTACTGAATTTGAAGTTGG+TGG | - | chr4.4:32862551-32862570 | MS.gene006553:CDS | 35.0% |
| !! | TTTGAAGTTGGTGGTAGAAT+TGG | - | chr4.4:32862560-32862579 | MS.gene006553:CDS | 35.0% |
| !!! | TCCACTCGTCCATTATTTTT+TGG | - | chr4.4:32863090-32863109 | MS.gene006553:intron | 35.0% |
| AGGCCAGAAAATGATCATCA+AGG | - | chr4.4:32863194-32863213 | MS.gene006553:CDS | 40.0% | |
| CTGATGAAGTAGAACATTCC+TGG | + | chr4.4:32863150-32863169 | None:intergenic | 40.0% | |
| GCAAAGTAAAAGTGAGTGTG+AGG | + | chr4.4:32862492-32862511 | None:intergenic | 40.0% | |
| GCATTCTCATTTGCAGATTG+TGG | + | chr4.4:32863252-32863271 | None:intergenic | 40.0% | |
| GGAATGTTCTACTTCATCAG+TGG | - | chr4.4:32863150-32863169 | MS.gene006553:intron | 40.0% | |
| GTTAGTGGTCATTGTACAAG+AGG | - | chr4.4:32863174-32863193 | MS.gene006553:CDS | 40.0% | |
| TACTTCATCAGTGGAGTTAG+TGG | - | chr4.4:32863159-32863178 | MS.gene006553:intron | 40.0% | |
| TCATCTTTGTCCTTTGAGTC+AGG | + | chr4.4:32862596-32862615 | None:intergenic | 40.0% | |
| TGAGAAAGATTCAGTGATGG+TGG | - | chr4.4:32863038-32863057 | MS.gene006553:intron | 40.0% | |
| ! | GTTTTCAAATTTGAGCGACC+AGG | - | chr4.4:32863129-32863148 | MS.gene006553:intron | 40.0% |
| ! | TTTCTCAGCCTCCCAATTTT+TGG | - | chr4.4:32862520-32862539 | MS.gene006553:CDS | 40.0% |
| !! | AAGTTGGTGGTAGAATTGGT+TGG | - | chr4.4:32862564-32862583 | MS.gene006553:CDS | 40.0% |
| !! | AGTTGGTGGTAGAATTGGTT+GGG | - | chr4.4:32862565-32862584 | MS.gene006553:CDS | 40.0% |
| !! | GCCAAAAAATAATGGACGAG+TGG | + | chr4.4:32863094-32863113 | None:intergenic | 40.0% |
| !! | GTTGATGACCAAAAATTGGG+AGG | + | chr4.4:32862531-32862550 | None:intergenic | 40.0% |
| TCATTTGCAGATTGTGGTGC+TGG | + | chr4.4:32863246-32863265 | None:intergenic | 45.0% | |
| ! | TTGGGTTGTGCCTGACTCAA+AGG | - | chr4.4:32862583-32862602 | MS.gene006553:CDS | 50.0% |
| !! | GTGTGAGGCAGCTTTGAAGA+TGG | + | chr4.4:32862477-32862496 | None:intergenic | 50.0% |
| !! | TGTGGTGCTGGTGCTGTAAT+TGG | + | chr4.4:32863234-32863253 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 32862467 | 32863371 | 32862467 | ID=MS.gene006553 |
| chr4.4 | mRNA | 32862467 | 32863371 | 32862467 | ID=MS.gene006553.t1;Parent=MS.gene006553 |
| chr4.4 | exon | 32863170 | 32863371 | 32863170 | ID=MS.gene006553.t1.exon1;Parent=MS.gene006553.t1 |
| chr4.4 | CDS | 32863170 | 32863371 | 32863170 | ID=cds.MS.gene006553.t1;Parent=MS.gene006553.t1 |
| chr4.4 | exon | 32862467 | 32862810 | 32862467 | ID=MS.gene006553.t1.exon2;Parent=MS.gene006553.t1 |
| chr4.4 | CDS | 32862467 | 32862810 | 32862467 | ID=cds.MS.gene006553.t1;Parent=MS.gene006553.t1 |
| Gene Sequence |
| Protein sequence |
