Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016539.t1 | XP_003627969.2 | 97.3 | 296 | 8 | 0 | 1 | 296 | 1 | 296 | 6.90E-163 | 583.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016539.t1 | Q9LHH5 | 25.7 | 284 | 177 | 7 | 7 | 289 | 3 | 253 | 1.5e-09 | 65.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016539.t1 | G7LHM0 | 97.3 | 296 | 8 | 0 | 1 | 296 | 1 | 296 | 5.0e-163 | 583.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016539 | MS.gene063813 | PPI |
| MS.gene016539 | MS.gene88431 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016539.t1 | MTR_8g040640 | 97.297 | 296 | 8 | 0 | 1 | 296 | 1 | 296 | 0.0 | 602 |
| MS.gene016539.t1 | MTR_8g040640 | 96.000 | 175 | 7 | 0 | 122 | 296 | 35 | 209 | 7.60e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGAAAACTGGTCAAAA+TGG | 0.212731 | 8.2:-59978432 | MS.gene016539:CDS |
| ACCGGGCGATCAAGATTTAA+TGG | 0.329908 | 8.2:-59978467 | MS.gene016539:CDS |
| TTAGGTGAATTGTAACCTTC+AGG | 0.333912 | 8.2:+59978397 | None:intergenic |
| GCTCAGAATGATCCAAGATT+TGG | 0.336181 | 8.2:+59976173 | None:intergenic |
| ATTCCAGACACTCCAAATCT+TGG | 0.354694 | 8.2:-59976185 | MS.gene016539:intron |
| GTTGAAATTGAATTCTAATT+CGG | 0.357412 | 8.2:+59978345 | None:intergenic |
| TTAGCCATGGATTGGTACTA+TGG | 0.366474 | 8.2:-59978514 | None:intergenic |
| GCTAGATTGATCTTTATCAT+AGG | 0.391039 | 8.2:+59978282 | None:intergenic |
| ACCAGAAAACTGGTCAAAAT+GGG | 0.398356 | 8.2:-59978431 | MS.gene016539:CDS |
| GGCATCCATCACCAGAAAAC+TGG | 0.409517 | 8.2:-59978441 | MS.gene016539:CDS |
| CTGTTGGTCTCTGATTCCAT+TGG | 0.476213 | 8.2:+59975495 | None:intergenic |
| GCCATTAAATCTTGATCGCC+CGG | 0.481344 | 8.2:+59978466 | None:intergenic |
| ACAGACTATTAGCCATGGAT+TGG | 0.499884 | 8.2:-59978522 | None:intergenic |
| AACGAACGATTTCGTTGTAC+CGG | 0.507721 | 8.2:-59978485 | MS.gene016539:CDS |
| TCTTGAGGCAATAATTTCAC+AGG | 0.518119 | 8.2:-59976089 | MS.gene016539:intron |
| TTCGGTTGTATCTGAATCCA+TGG | 0.525837 | 8.2:+59978363 | None:intergenic |
| TGATGATTGCTTGAACATAG+AGG | 0.536604 | 8.2:-59976958 | MS.gene016539:intron |
| GCATGCTAACATCACCATCC+AGG | 0.540288 | 8.2:+59975889 | None:intergenic |
| TCTAGCAGTTCAAGTGTATG+TGG | 0.542953 | 8.2:-59978265 | MS.gene016539:CDS |
| GAATTAGAATTCAATTTCAA+CGG | 0.553537 | 8.2:-59978343 | MS.gene016539:CDS |
| AACTGCTCTGTCGACACTGT+TGG | 0.570993 | 8.2:+59975479 | None:intergenic |
| GATCATTCTGAGCAATTCAG+TGG | 0.574655 | 8.2:-59976163 | MS.gene016539:CDS |
| ACGAACGATTTCGTTGTACC+GGG | 0.575268 | 8.2:-59978484 | MS.gene016539:CDS |
| CATGCAAGAGGCAATGCCAT+GGG | 0.575721 | 8.2:-59975871 | MS.gene016539:CDS |
| GCTTCATTGTGAACTGCCCA+TGG | 0.576976 | 8.2:+59975855 | None:intergenic |
| GCATGCAAGAGGCAATGCCA+TGG | 0.580050 | 8.2:-59975872 | MS.gene016539:CDS |
| ATGGATTGGTACTATGGATG+TGG | 0.584308 | 8.2:-59978508 | MS.gene016539:CDS |
| AACGGTGAAAGTTTCCGCGA+TGG | 0.584616 | 8.2:-59978325 | MS.gene016539:CDS |
| TCAGAATGTAGTAGAGGACC+TGG | 0.590986 | 8.2:-59975907 | MS.gene016539:CDS |
| TGGGGAATAAATACACCTGA+AGG | 0.602852 | 8.2:-59978412 | MS.gene016539:CDS |
| GCGATCAAGATTTAATGGCT+AGG | 0.605112 | 8.2:-59978462 | MS.gene016539:CDS |
| GTCTGACGACAAGAAACCAA+TGG | 0.611234 | 8.2:-59975511 | MS.gene016539:CDS |
| ATCTACACTGCAGAATCTTG+AGG | 0.615256 | 8.2:-59976104 | MS.gene016539:CDS |
| AAAACATCAGAATGTAGTAG+AGG | 0.618804 | 8.2:-59975913 | MS.gene016539:CDS |
| AGAGTTGCATGTAAGATACT+CGG | 0.620268 | 8.2:+59976986 | None:intergenic |
| GGATCAGCATTCACAATATG+CGG | 0.622909 | 8.2:+59975434 | None:intergenic |
| AATCAATGCAGCAATACACC+TGG | 0.625933 | 8.2:-59977151 | MS.gene016539:intron |
| ACATCCATAGTACCAATCCA+TGG | 0.634261 | 8.2:+59978510 | None:intergenic |
| CCAGAAAACTGGTCAAAATG+GGG | 0.639085 | 8.2:-59978430 | MS.gene016539:CDS |
| TGTGTACAAGAAAATGTCAT+CGG | 0.643710 | 8.2:+59978153 | None:intergenic |
| GTTGCTAATCTCATGTTCAA+CGG | 0.648717 | 8.2:-59975459 | MS.gene016539:CDS |
| AATGTAGTAGAGGACCTGGA+TGG | 0.664719 | 8.2:-59975903 | MS.gene016539:CDS |
| AGCAGTTCAAGTGTATGTGG+AGG | 0.666769 | 8.2:-59978262 | MS.gene016539:CDS |
| CAGTTCACAATGAAGCCTTG+AGG | 0.672028 | 8.2:-59975848 | MS.gene016539:intron |
| TGGTGATGTTAGCATGCAAG+AGG | 0.691812 | 8.2:-59975883 | MS.gene016539:CDS |
| GTACAAGAAAATGTCATCGG+TGG | 0.696106 | 8.2:+59978156 | None:intergenic |
| ATTCAAACTTGACTCCATCG+CGG | 0.769037 | 8.2:+59978311 | None:intergenic |
| CAAGGCGGTAAAGTGCATCG+CGG | 0.772895 | 8.2:+59975946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACAATATTTTTTTTACA+GGG | - | chr8.2:59976476-59976495 | MS.gene016539:intron | 10.0% |
| !!! | AAAATGAAATTCTTTTTTAA+TGG | + | chr8.2:59976132-59976151 | None:intergenic | 10.0% |
| !!! | AAATGAAATTCTTTTTTAAT+GGG | + | chr8.2:59976131-59976150 | None:intergenic | 10.0% |
| !! | TAAAAAGTAGTATATTTGAA+AGG | + | chr8.2:59976242-59976261 | None:intergenic | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | - | chr8.2:59976246-59976265 | MS.gene016539:intron | 15.0% |
| !!! | CAAAACAATATTTTTTTTAC+AGG | - | chr8.2:59976475-59976494 | MS.gene016539:intron | 15.0% |
| !!! | TTCAAAATGAACAAATTTTA+CGG | + | chr8.2:59976295-59976314 | None:intergenic | 15.0% |
| !! | AAAGTCCAATTAAAAGAAAA+AGG | + | chr8.2:59977500-59977519 | None:intergenic | 20.0% |
| !! | AAGATAAATATGGTGAAATT+TGG | + | chr8.2:59975970-59975989 | None:intergenic | 20.0% |
| !! | AATTAAAAGAAAAAGGAGAA+AGG | + | chr8.2:59977493-59977512 | None:intergenic | 20.0% |
| !! | ACCATATTTATCTTTATCAT+CGG | - | chr8.2:59975976-59975995 | MS.gene016539:intron | 20.0% |
| !! | ATTAAAAGAAAAAGGAGAAA+GGG | + | chr8.2:59977492-59977511 | None:intergenic | 20.0% |
| !! | CATAATGATTATTATCATAC+AGG | + | chr8.2:59975855-59975874 | None:intergenic | 20.0% |
| !! | GAATTAGAATTCAATTTCAA+CGG | - | chr8.2:59975602-59975621 | MS.gene016539:intron | 20.0% |
| !! | GTTGAAATTGAATTCTAATT+CGG | + | chr8.2:59975603-59975622 | None:intergenic | 20.0% |
| !!! | ATATACTACTTTTTTACCTT+TGG | - | chr8.2:59976163-59976182 | MS.gene016539:CDS | 20.0% |
| !!! | ATCGAACTATATTTTTTTAC+AGG | + | chr8.2:59976219-59976238 | None:intergenic | 20.0% |
| !!! | ATTTTCAGGATAAAAGTAAA+AGG | + | chr8.2:59976777-59976796 | None:intergenic | 20.0% |
| !!! | TCGAACTATATTTTTTTACA+GGG | + | chr8.2:59976218-59976237 | None:intergenic | 20.0% |
| !!! | TTTCTCCTTTTTCTTTTAAT+TGG | - | chr8.2:59977492-59977511 | MS.gene016539:intron | 20.0% |
| ! | AAAAAAGTAGTATATTTGCG+AGG | + | chr8.2:59976158-59976177 | None:intergenic | 25.0% |
| ! | AATCTAAATCATATACCTCA+AGG | + | chr8.2:59978115-59978134 | None:intergenic | 25.0% |
| ! | CAAAAAGTGGTATATTTACA+TGG | + | chr8.2:59976100-59976119 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTAAGACTATA+TGG | + | chr8.2:59977181-59977200 | None:intergenic | 25.0% |
| ! | TCCGATGATAAAGATAAATA+TGG | + | chr8.2:59975980-59975999 | None:intergenic | 25.0% |
| ! | TTGAATTAATTTCATGCCTA+TGG | + | chr8.2:59976650-59976669 | None:intergenic | 25.0% |
| ! | TTTACAAAATCAAGATCATC+AGG | + | chr8.2:59978331-59978350 | None:intergenic | 25.0% |
| !! | AGAAAATAGAAGTGTATGTT+TGG | + | chr8.2:59978258-59978277 | None:intergenic | 25.0% |
| !! | TATACTACAGCTTTTACTTT+AGG | + | chr8.2:59976443-59976462 | None:intergenic | 25.0% |
| !! | TATTTTGCAAAACATGCAAA+TGG | - | chr8.2:59977679-59977698 | MS.gene016539:intron | 25.0% |
| !! | TCAAACACATACTTTAAGTT+TGG | + | chr8.2:59978285-59978304 | None:intergenic | 25.0% |
| !! | TTGAGGTTTACATATGTTTT+TGG | - | chr8.2:59976073-59976092 | MS.gene016539:intron | 25.0% |
| !!! | CATGTAAATATACCACTTTT+TGG | - | chr8.2:59976098-59976117 | MS.gene016539:CDS | 25.0% |
| AAAAACATCATTGCAAAGCA+TGG | + | chr8.2:59977287-59977306 | None:intergenic | 30.0% | |
| AAAACATCAGAATGTAGTAG+AGG | - | chr8.2:59978032-59978051 | MS.gene016539:intron | 30.0% | |
| AAAGCTGTAGTATATTTGCA+AGG | - | chr8.2:59976449-59976468 | MS.gene016539:intron | 30.0% | |
| AAGTTCTTAAGACTATATGG+TGG | + | chr8.2:59977178-59977197 | None:intergenic | 30.0% | |
| ACCTAAAAATTTCATGACCA+TGG | - | chr8.2:59975565-59975584 | MS.gene016539:intron | 30.0% | |
| AGAAAAGGTCTCAAAAACAA+GGG | + | chr8.2:59977446-59977465 | None:intergenic | 30.0% | |
| AGATGTTGCATTACACTATA+AGG | + | chr8.2:59977718-59977737 | None:intergenic | 30.0% | |
| AGTCCTTATGAAACAACTAT+TGG | - | chr8.2:59976350-59976369 | MS.gene016539:intron | 30.0% | |
| ATTAAGCTGTTTATCCAATC+AGG | - | chr8.2:59977388-59977407 | MS.gene016539:intron | 30.0% | |
| CAATACCATAGAAATTGTTC+AGG | + | chr8.2:59976866-59976885 | None:intergenic | 30.0% | |
| GCTAGATTGATCTTTATCAT+AGG | + | chr8.2:59975666-59975685 | None:intergenic | 30.0% | |
| GTCCTTATGAAACAACTATT+GGG | - | chr8.2:59976351-59976370 | MS.gene016539:intron | 30.0% | |
| GTGTAAAAAGAGTAATTACC+AGG | + | chr8.2:59976815-59976834 | None:intergenic | 30.0% | |
| TATTGCACAGACTAATTCAA+AGG | - | chr8.2:59976398-59976417 | MS.gene016539:intron | 30.0% | |
| TCCTTATGAAACAACTATTG+GGG | - | chr8.2:59976352-59976371 | MS.gene016539:intron | 30.0% | |
| TGAACTAGTTAAGAGAGAAA+GGG | + | chr8.2:59977957-59977976 | None:intergenic | 30.0% | |
| TGTGTACAAGAAAATGTCAT+CGG | + | chr8.2:59975795-59975814 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCAATCA+GGG | - | chr8.2:59977389-59977408 | MS.gene016539:intron | 30.0% | |
| TTACGATTAAGAGTTGAGTT+TGG | - | chr8.2:59977048-59977067 | MS.gene016539:intron | 30.0% | |
| TTGAACTAGTTAAGAGAGAA+AGG | + | chr8.2:59977958-59977977 | None:intergenic | 30.0% | |
| TTGAATGTAACCAAATGTGT+CGG | + | chr8.2:59977557-59977576 | None:intergenic | 30.0% | |
| ! | ATTCTGATGTTTTGTATCTC+TGG | + | chr8.2:59978025-59978044 | None:intergenic | 30.0% |
| ! | CAAATGCTACCTTTGTTTAT+AGG | - | chr8.2:59978412-59978431 | MS.gene016539:CDS | 30.0% |
| ! | TCCATGGTCATGAAATTTTT+AGG | + | chr8.2:59975569-59975588 | None:intergenic | 30.0% |
| !! | TGCATTCTTTTATTTCCATC+AGG | - | chr8.2:59976910-59976929 | MS.gene016539:intron | 30.0% |
| !!! | TTAAGAAGCTTTTGAGTTTG+AGG | + | chr8.2:59977415-59977434 | None:intergenic | 30.0% |
| AACCTGTTATAGTAGGGTAA+GGG | - | chr8.2:59976038-59976057 | MS.gene016539:intron | 35.0% | |
| AAGCATGAACCTGTTATAGT+AGG | - | chr8.2:59976031-59976050 | MS.gene016539:intron | 35.0% | |
| ACCAGAAAACTGGTCAAAAT+GGG | - | chr8.2:59975514-59975533 | MS.gene016539:CDS | 35.0% | |
| AGAGTTGCATGTAAGATACT+CGG | + | chr8.2:59976962-59976981 | None:intergenic | 35.0% | |
| AGCATGAACCTGTTATAGTA+GGG | - | chr8.2:59976032-59976051 | MS.gene016539:intron | 35.0% | |
| AGTTGCCTGAACAATTTCTA+TGG | - | chr8.2:59976858-59976877 | MS.gene016539:intron | 35.0% | |
| ATGGGACTAATACCAAAAAG+TGG | + | chr8.2:59976113-59976132 | None:intergenic | 35.0% | |
| CACATGTTTCACATAATGCA+GGG | - | chr8.2:59976706-59976725 | MS.gene016539:intron | 35.0% | |
| CAGAAAAGGTCTCAAAAACA+AGG | + | chr8.2:59977447-59977466 | None:intergenic | 35.0% | |
| CAGCATGAAATGACTTATAC+TGG | + | chr8.2:59977257-59977276 | None:intergenic | 35.0% | |
| CCTTATGAAACAACTATTGG+GGG | - | chr8.2:59976353-59976372 | MS.gene016539:intron | 35.0% | |
| CTTATGAAACAACTATTGGG+GGG | - | chr8.2:59976354-59976373 | MS.gene016539:intron | 35.0% | |
| GAAGTGTATGTTTGGTTGAA+CGG | + | chr8.2:59978250-59978269 | None:intergenic | 35.0% | |
| GCAAAAAGTGGTAGATTTGT+TGG | - | chr8.2:59976507-59976526 | MS.gene016539:intron | 35.0% | |
| GTTGCTAATCTCATGTTCAA+CGG | - | chr8.2:59978486-59978505 | MS.gene016539:CDS | 35.0% | |
| TCACATGTTTCACATAATGC+AGG | - | chr8.2:59976705-59976724 | MS.gene016539:intron | 35.0% | |
| TCTTGAGGCAATAATTTCAC+AGG | - | chr8.2:59977856-59977875 | MS.gene016539:intron | 35.0% | |
| TGATGATTGCTTGAACATAG+AGG | - | chr8.2:59976987-59977006 | MS.gene016539:CDS | 35.0% | |
| TTAGGTGAATTGTAACCTTC+AGG | + | chr8.2:59975551-59975570 | None:intergenic | 35.0% | |
| TTCATGCTTATAGAGTTGTG+CGG | + | chr8.2:59976020-59976039 | None:intergenic | 35.0% | |
| ! | AAGGGCTACTATTTTCTTTG+AGG | - | chr8.2:59976056-59976075 | MS.gene016539:intron | 35.0% |
| ! | AGATTCATGTTTTACCACCA+CGG | + | chr8.2:59977125-59977144 | None:intergenic | 35.0% |
| ! | GTGTATAACAAATGACTTGC+AGG | + | chr8.2:59977235-59977254 | None:intergenic | 35.0% |
| !! | AAGTGGTAGATTTGTTGGTA+CGG | - | chr8.2:59976512-59976531 | MS.gene016539:intron | 35.0% |
| !! | ACATTTGGTCTTTGCTGTTT+CGG | - | chr8.2:59976261-59976280 | MS.gene016539:intron | 35.0% |
| !! | ACTTCTGGGATTAATATGCT+TGG | - | chr8.2:59975821-59975840 | MS.gene016539:intron | 35.0% |
| !! | AGGGATTCTAAAGCAAAAAG+TGG | - | chr8.2:59976495-59976514 | MS.gene016539:intron | 35.0% |
| !! | GACACATAGACAAGAGTATT+TGG | + | chr8.2:59977213-59977232 | None:intergenic | 35.0% |
| !! | TTGTTTGAGTTTTCAGCACA+TGG | + | chr8.2:59976752-59976771 | None:intergenic | 35.0% |
| !!! | GTATTGCTGCATTGATTTTC+AGG | + | chr8.2:59976791-59976810 | None:intergenic | 35.0% |
| AAAGGTGACCAAAGACAACA+AGG | - | chr8.2:59976416-59976435 | MS.gene016539:intron | 40.0% | |
| AACGAACGATTTCGTTGTAC+CGG | - | chr8.2:59975460-59975479 | MS.gene016539:CDS | 40.0% | |
| AATCAATGCAGCAATACACC+TGG | - | chr8.2:59976794-59976813 | MS.gene016539:intron | 40.0% | |
| ACCAAAACAGCAAGAACCAA+AGG | + | chr8.2:59976182-59976201 | None:intergenic | 40.0% | |
| AGAGTTGAGTTTGGTATCTC+AGG | - | chr8.2:59977057-59977076 | MS.gene016539:intron | 40.0% | |
| ATCTACACTGCAGAATCTTG+AGG | - | chr8.2:59977841-59977860 | MS.gene016539:intron | 40.0% | |
| ATGCAAAGCATACTCATGCT+AGG | + | chr8.2:59975899-59975918 | None:intergenic | 40.0% | |
| ATTCAAACTTGACTCCATCG+CGG | + | chr8.2:59975637-59975656 | None:intergenic | 40.0% | |
| ATTCCAGACACTCCAAATCT+TGG | - | chr8.2:59977760-59977779 | MS.gene016539:intron | 40.0% | |
| CACCAGAAAACTGGTCAAAA+TGG | - | chr8.2:59975513-59975532 | MS.gene016539:CDS | 40.0% | |
| CAGAGACATTCAATTCTCAC+TGG | - | chr8.2:59976621-59976640 | MS.gene016539:intron | 40.0% | |
| CATCACAAGTTCACAACACA+AGG | - | chr8.2:59977315-59977334 | MS.gene016539:intron | 40.0% | |
| CCAGAAAACTGGTCAAAATG+GGG | - | chr8.2:59975515-59975534 | MS.gene016539:intron | 40.0% | |
| GAACCTGTTATAGTAGGGTA+AGG | - | chr8.2:59976037-59976056 | MS.gene016539:intron | 40.0% | |
| GAGTTGAGTTTGGTATCTCA+GGG | - | chr8.2:59977058-59977077 | MS.gene016539:intron | 40.0% | |
| GATCATTCTGAGCAATTCAG+TGG | - | chr8.2:59977782-59977801 | MS.gene016539:intron | 40.0% | |
| GCACATTAAATCAGATGCGA+AGG | + | chr8.2:59977906-59977925 | None:intergenic | 40.0% | |
| GCGATCAAGATTTAATGGCT+AGG | - | chr8.2:59975483-59975502 | MS.gene016539:CDS | 40.0% | |
| GCTCAGAATGATCCAAGATT+TGG | + | chr8.2:59977775-59977794 | None:intergenic | 40.0% | |
| GTACAAGAAAATGTCATCGG+TGG | + | chr8.2:59975792-59975811 | None:intergenic | 40.0% | |
| GTCGTCAGACCTATAAACAA+AGG | + | chr8.2:59978424-59978443 | None:intergenic | 40.0% | |
| TCATCGGAGCCAAAACAAAA+TGG | - | chr8.2:59975992-59976011 | MS.gene016539:intron | 40.0% | |
| TCGATTGACAGTGAGATTGT+CGG | - | chr8.2:59978159-59978178 | MS.gene016539:intron | 40.0% | |
| TCTAGCAGTTCAAGTGTATG+TGG | - | chr8.2:59975680-59975699 | MS.gene016539:intron | 40.0% | |
| TGGGGAATAAATACACCTGA+AGG | - | chr8.2:59975533-59975552 | MS.gene016539:intron | 40.0% | |
| TGTACACAAGCGTAACTTCT+GGG | - | chr8.2:59975807-59975826 | MS.gene016539:intron | 40.0% | |
| TTCGGTTGTATCTGAATCCA+TGG | + | chr8.2:59975585-59975604 | None:intergenic | 40.0% | |
| TTGTACACAAGCGTAACTTC+TGG | - | chr8.2:59975806-59975825 | MS.gene016539:intron | 40.0% | |
| ! | ATAGAGCATTCAATTCCCAC+TGG | + | chr8.2:59975933-59975952 | None:intergenic | 40.0% |
| ! | CCCCCAATAGTTGTTTCATA+AGG | + | chr8.2:59976356-59976375 | None:intergenic | 40.0% |
| ! | CTTTAGGTCCTTGTTGTCTT+TGG | + | chr8.2:59976427-59976446 | None:intergenic | 40.0% |
| ! | GATGTTTTGTATCTCTGGCA+AGG | + | chr8.2:59978020-59978039 | None:intergenic | 40.0% |
| ! | GATTCATGTTTTACCACCAC+GGG | + | chr8.2:59977124-59977143 | None:intergenic | 40.0% |
| !! | ATGGATTGGTACTATGGATG+TGG | - | chr8.2:59975437-59975456 | MS.gene016539:CDS | 40.0% |
| !! | GATGAAGCATTGACATAGAC+AGG | + | chr8.2:59977644-59977663 | None:intergenic | 40.0% |
| !! | GCATTTTAGCAAAGTCCAGT+GGG | - | chr8.2:59975915-59975934 | MS.gene016539:CDS | 40.0% |
| !! | TGCATTTTAGCAAAGTCCAG+TGG | - | chr8.2:59975914-59975933 | MS.gene016539:CDS | 40.0% |
| !! | TGTGCGGAACCATTTTGTTT+TGG | + | chr8.2:59976004-59976023 | None:intergenic | 40.0% |
| !! | TTTGACCAGTTTTCTGGTGA+TGG | + | chr8.2:59975512-59975531 | None:intergenic | 40.0% |
| !!! | ACCTTTGGTTCTTGCTGTTT+TGG | - | chr8.2:59976178-59976197 | MS.gene016539:CDS | 40.0% |
| AAAGGAGAAAGGGAGTAGCA+TGG | + | chr8.2:59977482-59977501 | None:intergenic | 45.0% | |
| AAGGAGAAAGGGAGTAGCAT+GGG | + | chr8.2:59977481-59977500 | None:intergenic | 45.0% | |
| AATGTAGTAGAGGACCTGGA+TGG | - | chr8.2:59978042-59978061 | MS.gene016539:intron | 45.0% | |
| ACCGGGCGATCAAGATTTAA+TGG | - | chr8.2:59975478-59975497 | MS.gene016539:CDS | 45.0% | |
| ACGAACGATTTCGTTGTACC+GGG | - | chr8.2:59975461-59975480 | MS.gene016539:CDS | 45.0% | |
| AGCAGTTCAAGTGTATGTGG+AGG | - | chr8.2:59975683-59975702 | MS.gene016539:intron | 45.0% | |
| AGCCCTTACCCTACTATAAC+AGG | + | chr8.2:59976043-59976062 | None:intergenic | 45.0% | |
| ATGTCGTGTCAGTGTGATAC+GGG | + | chr8.2:59977530-59977549 | None:intergenic | 45.0% | |
| CAGTGAGATTGTCGGAATCA+CGG | - | chr8.2:59978167-59978186 | MS.gene016539:CDS | 45.0% | |
| CAGTTCACAATGAAGCCTTG+AGG | - | chr8.2:59978097-59978116 | MS.gene016539:intron | 45.0% | |
| CATGTCGTGTCAGTGTGATA+CGG | + | chr8.2:59977531-59977550 | None:intergenic | 45.0% | |
| CGGTGAGTTTGGCAAAATCA+CGG | + | chr8.2:59978230-59978249 | None:intergenic | 45.0% | |
| GCCATTAAATCTTGATCGCC+CGG | + | chr8.2:59975482-59975501 | None:intergenic | 45.0% | |
| GGGGAACAGTTACACAGAAA+AGG | + | chr8.2:59977461-59977480 | None:intergenic | 45.0% | |
| GTCAATGTCAGTGTCATCTC+TGG | - | chr8.2:59977614-59977633 | MS.gene016539:intron | 45.0% | |
| GTCTGACGACAAGAAACCAA+TGG | - | chr8.2:59978434-59978453 | MS.gene016539:CDS | 45.0% | |
| GTTTGGTTGAACGGTGAGTT+TGG | + | chr8.2:59978241-59978260 | None:intergenic | 45.0% | |
| TCAGAATGTAGTAGAGGACC+TGG | - | chr8.2:59978038-59978057 | MS.gene016539:intron | 45.0% | |
| TCATTCTGCAGTTCACCTGA+TGG | + | chr8.2:59976928-59976947 | None:intergenic | 45.0% | |
| ! | CAATTCTCACTGGCTACCAT+AGG | - | chr8.2:59976631-59976650 | MS.gene016539:intron | 45.0% |
| ! | CTGTTGGTCTCTGATTCCAT+TGG | + | chr8.2:59978453-59978472 | None:intergenic | 45.0% |
| ! | GATCCAAGATTTGGAGTGTC+TGG | + | chr8.2:59977766-59977785 | None:intergenic | 45.0% |
| ! | GTTTTGTATCTCTGGCAAGG+CGG | + | chr8.2:59978017-59978036 | None:intergenic | 45.0% |
| ! | TGGTGATGTTAGCATGCAAG+AGG | - | chr8.2:59978062-59978081 | MS.gene016539:intron | 45.0% |
| ! | TTTGAGTTTGAGGCCCTGAT+TGG | + | chr8.2:59977405-59977424 | None:intergenic | 45.0% |
| !! | CCCCATTTTGACCAGTTTTC+TGG | + | chr8.2:59975518-59975537 | None:intergenic | 45.0% |
| AACGGTGAAAGTTTCCGCGA+TGG | - | chr8.2:59975620-59975639 | MS.gene016539:intron | 50.0% | |
| AACTGCTCTGTCGACACTGT+TGG | + | chr8.2:59978469-59978488 | None:intergenic | 50.0% | |
| AGGAGAAAGGGAGTAGCATG+GGG | + | chr8.2:59977480-59977499 | None:intergenic | 50.0% | |
| CATGCAAGAGGCAATGCCAT+GGG | - | chr8.2:59978074-59978093 | MS.gene016539:intron | 50.0% | |
| CGACATGACACCGACACATT+TGG | - | chr8.2:59977544-59977563 | MS.gene016539:intron | 50.0% | |
| GCATGCTAACATCACCATCC+AGG | + | chr8.2:59978059-59978078 | None:intergenic | 50.0% | |
| GCTTCATTGTGAACTGCCCA+TGG | + | chr8.2:59978093-59978112 | None:intergenic | 50.0% | |
| GGAATCACGGTCAGACACTT+TGG | - | chr8.2:59978180-59978199 | MS.gene016539:CDS | 50.0% | |
| GGCATCCATCACCAGAAAAC+TGG | - | chr8.2:59975504-59975523 | MS.gene016539:CDS | 50.0% | |
| CAAGGCGGTAAAGTGCATCG+CGG | + | chr8.2:59978002-59978021 | None:intergenic | 55.0% | |
| GCATGCAAGAGGCAATGCCA+TGG | - | chr8.2:59978073-59978092 | MS.gene016539:intron | 55.0% | |
| AACCACTAGCGCTAGACCCG+TGG | - | chr8.2:59977105-59977124 | MS.gene016539:intron | 60.0% | |
| ACGGGTCTAGCGCTAGTGGT+TGG | + | chr8.2:59977106-59977125 | None:intergenic | 60.0% | |
| CACCACGGGTCTAGCGCTAG+TGG | + | chr8.2:59977110-59977129 | None:intergenic | 65.0% | |
| CACTAGCGCTAGACCCGTGG+TGG | - | chr8.2:59977108-59977127 | MS.gene016539:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 59975437 | 59978530 | 59975437 | ID=MS.gene016539 |
| chr8.2 | mRNA | 59975437 | 59978530 | 59975437 | ID=MS.gene016539.t1;Parent=MS.gene016539 |
| chr8.2 | exon | 59978160 | 59978530 | 59978160 | ID=MS.gene016539.t1.exon1;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59978160 | 59978530 | 59978160 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| chr8.2 | exon | 59977152 | 59977240 | 59977152 | ID=MS.gene016539.t1.exon2;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59977152 | 59977240 | 59977152 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| chr8.2 | exon | 59976959 | 59977035 | 59976959 | ID=MS.gene016539.t1.exon3;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59976959 | 59977035 | 59976959 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| chr8.2 | exon | 59976090 | 59976200 | 59976090 | ID=MS.gene016539.t1.exon4;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59976090 | 59976200 | 59976090 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| chr8.2 | exon | 59975849 | 59975994 | 59975849 | ID=MS.gene016539.t1.exon5;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59975849 | 59975994 | 59975849 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| chr8.2 | exon | 59975437 | 59975533 | 59975437 | ID=MS.gene016539.t1.exon6;Parent=MS.gene016539.t1 |
| chr8.2 | CDS | 59975437 | 59975533 | 59975437 | ID=cds.MS.gene016539.t1;Parent=MS.gene016539.t1 |
| Gene Sequence |
| Protein sequence |
