Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88431.t1 | XP_003627969.2 | 96.6 | 296 | 10 | 0 | 1 | 296 | 1 | 296 | 1.70E-161 | 578.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88431.t1 | Q9LHH5 | 25.7 | 284 | 177 | 7 | 7 | 289 | 3 | 253 | 2.6e-09 | 64.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88431.t1 | G7LHM0 | 96.6 | 296 | 10 | 0 | 1 | 296 | 1 | 296 | 1.2e-161 | 578.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016539 | MS.gene88431 | PPI |
| MS.gene88431 | MS.gene063813 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88431.t1 | MTR_8g040640 | 96.622 | 296 | 10 | 0 | 1 | 296 | 1 | 296 | 0.0 | 597 |
| MS.gene88431.t1 | MTR_8g040640 | 94.857 | 175 | 9 | 0 | 122 | 296 | 35 | 209 | 9.28e-120 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGAAAACTGGTCAAAA+TGG | 0.212731 | 8.3:-57385813 | MS.gene88431:CDS |
| ACCGGGCGATCAAGATTTAA+TGG | 0.329908 | 8.3:-57385848 | MS.gene88431:CDS |
| TTAGGTGAATTGTAACCTTC+AGG | 0.333912 | 8.3:+57385778 | None:intergenic |
| GCTCAGAATGATCCAAGATT+TGG | 0.336181 | 8.3:+57383573 | None:intergenic |
| ATTCCAGACACTCCAAATCT+TGG | 0.354694 | 8.3:-57383585 | MS.gene88431:intron |
| GTTGAAATTGAATTCTAATT+CGG | 0.357412 | 8.3:+57385726 | None:intergenic |
| TTAGCCATGGATTGGTACTA+TGG | 0.366474 | 8.3:-57385895 | None:intergenic |
| GCTAGATTGATCTTTATCAT+AGG | 0.391039 | 8.3:+57385663 | None:intergenic |
| CAGAATTAGAGTTGCATGTA+AGG | 0.391139 | 8.3:+57384364 | None:intergenic |
| ACCAGAAAACTGGTCAAAAT+GGG | 0.398356 | 8.3:-57385812 | MS.gene88431:CDS |
| GGCATCCATCACCAGAAAAC+TGG | 0.409517 | 8.3:-57385822 | MS.gene88431:CDS |
| ATTCTGATGTATTGTATCTC+TGG | 0.413340 | 8.3:+57383323 | None:intergenic |
| TACCAGGTGTATTGCTGCAT+TGG | 0.434993 | 8.3:+57384534 | None:intergenic |
| CTGTTGGTCTCTGATTCCAT+TGG | 0.476213 | 8.3:+57382890 | None:intergenic |
| GCCATTAAATCTTGATCGCC+CGG | 0.481344 | 8.3:+57385847 | None:intergenic |
| ACAGACTATTAGCCATGGAT+TGG | 0.499884 | 8.3:-57385903 | None:intergenic |
| AACGAACGATTTCGTTGTAC+CGG | 0.507721 | 8.3:-57385866 | MS.gene88431:CDS |
| TCTTGAGGCAATAATTTCAC+AGG | 0.518119 | 8.3:-57383489 | MS.gene88431:intron |
| TTCGGTTGTATCTGAATCCA+TGG | 0.525837 | 8.3:+57385744 | None:intergenic |
| TGATGATTGCTTGAACATAG+AGG | 0.536604 | 8.3:-57384343 | MS.gene88431:intron |
| GCATGCTAACATCACCATCC+AGG | 0.540288 | 8.3:+57383289 | None:intergenic |
| TCTAGCAGTTCAAGTGTATG+TGG | 0.542953 | 8.3:-57385646 | MS.gene88431:CDS |
| GAATTAGAATTCAATTTCAA+CGG | 0.553537 | 8.3:-57385724 | MS.gene88431:CDS |
| GATCATTCTGAGCAATTCAG+TGG | 0.574655 | 8.3:-57383563 | MS.gene88431:CDS |
| ACGAACGATTTCGTTGTACC+GGG | 0.575268 | 8.3:-57385865 | MS.gene88431:CDS |
| CATGCAAGAGGCAATGCCAT+GGG | 0.575721 | 8.3:-57383271 | MS.gene88431:CDS |
| GCTTCATTGTGAACTGCCCA+TGG | 0.576976 | 8.3:+57383255 | None:intergenic |
| AACTGCTCTGTCGACACTGT+TGG | 0.577880 | 8.3:+57382874 | None:intergenic |
| GCATGCAAGAGGCAATGCCA+TGG | 0.580050 | 8.3:-57383272 | MS.gene88431:CDS |
| ATGGATTGGTACTATGGATG+TGG | 0.584308 | 8.3:-57385889 | MS.gene88431:CDS |
| AACGGTGAAAGTTTCCGCGA+TGG | 0.584616 | 8.3:-57385706 | MS.gene88431:CDS |
| GATGTATTGTATCTCTGGCA+AGG | 0.593309 | 8.3:+57383328 | None:intergenic |
| TCAGAATGTAGTAGAGGACC+TGG | 0.596173 | 8.3:-57383307 | MS.gene88431:CDS |
| TGGGGAATAAATACACCTGA+AGG | 0.602852 | 8.3:-57385793 | MS.gene88431:CDS |
| GCGATCAAGATTTAATGGCT+AGG | 0.605112 | 8.3:-57385843 | MS.gene88431:CDS |
| GTCTGACAACAAGAAACCAA+TGG | 0.611234 | 8.3:-57382906 | MS.gene88431:CDS |
| ATCTACACTGCAGAATCTTG+AGG | 0.615256 | 8.3:-57383504 | MS.gene88431:CDS |
| GGATCAGCATTCACAATATG+CGG | 0.622909 | 8.3:+57382829 | None:intergenic |
| AGAGTTGCATGTAAGGTACT+CGG | 0.623481 | 8.3:+57384371 | None:intergenic |
| AACCAATGCAGCAATACACC+TGG | 0.625548 | 8.3:-57384536 | MS.gene88431:intron |
| AATACATCAGAATGTAGTAG+AGG | 0.631188 | 8.3:-57383313 | MS.gene88431:CDS |
| ACATCCATAGTACCAATCCA+TGG | 0.634261 | 8.3:+57385891 | None:intergenic |
| CCAGAAAACTGGTCAAAATG+GGG | 0.639085 | 8.3:-57385811 | MS.gene88431:CDS |
| TGTGTACAAGAAAATGTCAT+CGG | 0.643710 | 8.3:+57385534 | None:intergenic |
| GTTGCAAATCTCATGTTCAA+CGG | 0.646462 | 8.3:-57382854 | MS.gene88431:CDS |
| AATGTAGTAGAGGACCTGGA+TGG | 0.664719 | 8.3:-57383303 | MS.gene88431:CDS |
| AGCAGTTCAAGTGTATGTGG+AGG | 0.666769 | 8.3:-57385643 | MS.gene88431:CDS |
| CAGTTCACAATGAAGCCTTG+AGG | 0.672028 | 8.3:-57383248 | MS.gene88431:intron |
| TGGTGATGTTAGCATGCAAG+AGG | 0.691812 | 8.3:-57383283 | MS.gene88431:CDS |
| GTACAAGAAAATGTCATCGG+TGG | 0.696106 | 8.3:+57385537 | None:intergenic |
| GTATTGTATCTCTGGCAAGG+CGG | 0.751149 | 8.3:+57383331 | None:intergenic |
| ATTCAAACTTGACTCCATCG+CGG | 0.769037 | 8.3:+57385692 | None:intergenic |
| CAAGGCGGTAAAGTGCATCG+CGG | 0.772895 | 8.3:+57383346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGAAATTCTTTTTTAA+TGG | + | chr8.3:57383527-57383546 | None:intergenic | 10.0% |
| !!! | AAATGAAATTCTTTTTTAAT+GGG | + | chr8.3:57383526-57383545 | None:intergenic | 10.0% |
| !! | TAAAAAGTAGTATATTTGAA+AGG | + | chr8.3:57383637-57383656 | None:intergenic | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | - | chr8.3:57383641-57383660 | MS.gene88431:intron | 15.0% |
| !!! | ATATACTACTTTTTTACTTT+TGG | - | chr8.3:57383558-57383577 | MS.gene88431:CDS | 15.0% |
| !!! | TTCAAAATGAACAAATTTTA+CGG | + | chr8.3:57383690-57383709 | None:intergenic | 15.0% |
| !! | AAAGTCCAATTAAAAGAAAA+AGG | + | chr8.3:57384876-57384895 | None:intergenic | 20.0% |
| !! | AAGATAAATATGGTGAAATT+TGG | + | chr8.3:57383365-57383384 | None:intergenic | 20.0% |
| !! | AATTAAAAGAAAAAGGAGAA+AGG | + | chr8.3:57384869-57384888 | None:intergenic | 20.0% |
| !! | ACCATATTTATCTTTATCAT+TGG | - | chr8.3:57383371-57383390 | MS.gene88431:CDS | 20.0% |
| !! | ATTAAAAGAAAAAGGAGAAA+GGG | + | chr8.3:57384868-57384887 | None:intergenic | 20.0% |
| !! | GAATTAGAATTCAATTTCAA+CGG | - | chr8.3:57382997-57383016 | MS.gene88431:intron | 20.0% |
| !! | GTTGAAATTGAATTCTAATT+CGG | + | chr8.3:57382998-57383017 | None:intergenic | 20.0% |
| !! | TCCAATGATAAAGATAAATA+TGG | + | chr8.3:57383375-57383394 | None:intergenic | 20.0% |
| !!! | ATCGAACTATATTTTTTTAC+AGG | + | chr8.3:57383614-57383633 | None:intergenic | 20.0% |
| !!! | CAAAACGATATTTTTTTACA+GGG | - | chr8.3:57383870-57383889 | MS.gene88431:intron | 20.0% |
| !!! | TCAAAACGATATTTTTTTAC+AGG | - | chr8.3:57383869-57383888 | MS.gene88431:intron | 20.0% |
| !!! | TCAAACACATAATTTAAGTT+TGG | + | chr8.3:57385661-57385680 | None:intergenic | 20.0% |
| !!! | TCGAACTATATTTTTTTACA+GGG | + | chr8.3:57383613-57383632 | None:intergenic | 20.0% |
| !!! | TTTCTCCTTTTTCTTTTAAT+TGG | - | chr8.3:57384868-57384887 | MS.gene88431:intron | 20.0% |
| ! | AAAAAAGTAGTATATTTGCG+AGG | + | chr8.3:57383553-57383572 | None:intergenic | 25.0% |
| ! | AATCTAAATCATATACCTCA+AGG | + | chr8.3:57385491-57385510 | None:intergenic | 25.0% |
| ! | CAAAAAGTGGTATATTTACA+TGG | + | chr8.3:57383495-57383514 | None:intergenic | 25.0% |
| ! | CATGATGATTATTATCATAC+AGG | + | chr8.3:57383250-57383269 | None:intergenic | 25.0% |
| ! | TTACGATTAAGAGTTGAATT+TGG | - | chr8.3:57384439-57384458 | MS.gene88431:intron | 25.0% |
| ! | TTGAATTAATTTCATGCCTA+TGG | + | chr8.3:57384043-57384062 | None:intergenic | 25.0% |
| ! | TTTACAAAATCAAGATCATC+AGG | + | chr8.3:57385707-57385726 | None:intergenic | 25.0% |
| !! | AAAGGTGTAGTATATTTGTA+AGG | - | chr8.3:57383844-57383863 | MS.gene88431:intron | 25.0% |
| !! | AGAAAATAGAAGTGTATGTT+TGG | + | chr8.3:57385634-57385653 | None:intergenic | 25.0% |
| !! | TATACTACACCTTTTACTTT+AGG | + | chr8.3:57383838-57383857 | None:intergenic | 25.0% |
| !! | TATTTTGCAAAACATGCAAA+TGG | - | chr8.3:57385055-57385074 | MS.gene88431:intron | 25.0% |
| !! | TTGAGGTTTACATATGTTTT+TGG | - | chr8.3:57383468-57383487 | MS.gene88431:intron | 25.0% |
| !!! | CAAAAGTTTTGAAGACTATA+TGG | + | chr8.3:57384572-57384591 | None:intergenic | 25.0% |
| !!! | CATGTAAATATACCACTTTT+TGG | - | chr8.3:57383493-57383512 | MS.gene88431:CDS | 25.0% |
| !!! | GTTTTCAGGATAAAAGTAAA+AGG | + | chr8.3:57384168-57384187 | None:intergenic | 25.0% |
| AATACATCAGAATGTAGTAG+AGG | - | chr8.3:57385408-57385427 | MS.gene88431:intron | 30.0% | |
| ACCTAAAAATTTCATGACCA+TGG | - | chr8.3:57382960-57382979 | MS.gene88431:intron | 30.0% | |
| AGAAAAGGTCTCAAAAACAA+GGG | + | chr8.3:57384822-57384841 | None:intergenic | 30.0% | |
| AGATGTTGCATTACACTATA+AGG | + | chr8.3:57385094-57385113 | None:intergenic | 30.0% | |
| AGTCCTTATGAAACAACTAT+TGG | - | chr8.3:57383745-57383764 | MS.gene88431:intron | 30.0% | |
| ATTAAGCTGTTTATCCAATC+AGG | - | chr8.3:57384764-57384783 | MS.gene88431:intron | 30.0% | |
| ATTCTGATGTATTGTATCTC+TGG | + | chr8.3:57385401-57385420 | None:intergenic | 30.0% | |
| CAATACCATAGAAATTGTTC+AGG | + | chr8.3:57384257-57384276 | None:intergenic | 30.0% | |
| GCTAGATTGATCTTTATCAT+AGG | + | chr8.3:57383061-57383080 | None:intergenic | 30.0% | |
| GTCCTTATGAAACAACTATT+GGG | - | chr8.3:57383746-57383765 | MS.gene88431:intron | 30.0% | |
| GTGTAAAAAGAGTAATTACC+AGG | + | chr8.3:57384206-57384225 | None:intergenic | 30.0% | |
| TATTGCACAGACTAATTCAA+AGG | - | chr8.3:57383793-57383812 | MS.gene88431:intron | 30.0% | |
| TCCTTATGAAACAACTATTG+GGG | - | chr8.3:57383747-57383766 | MS.gene88431:intron | 30.0% | |
| TGAACTAGTTAAGAGAGAAA+GGG | + | chr8.3:57385333-57385352 | None:intergenic | 30.0% | |
| TGTGTACAAGAAAATGTCAT+CGG | + | chr8.3:57383190-57383209 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCAATCA+GGG | - | chr8.3:57384765-57384784 | MS.gene88431:intron | 30.0% | |
| TTGAACTAGTTAAGAGAGAA+AGG | + | chr8.3:57385334-57385353 | None:intergenic | 30.0% | |
| TTGAATGTAACCAAATGTGT+CGG | + | chr8.3:57384933-57384952 | None:intergenic | 30.0% | |
| ! | CAAATGCTACCTTTGTTTAT+AGG | - | chr8.3:57385793-57385812 | MS.gene88431:CDS | 30.0% |
| ! | TCCATGGTCATGAAATTTTT+AGG | + | chr8.3:57382964-57382983 | None:intergenic | 30.0% |
| !! | CATTTGTTGTACAGTAGTAT+AGG | - | chr8.3:57384634-57384653 | MS.gene88431:intron | 30.0% |
| !! | TGCATTCTTTTATTTCCATC+AGG | - | chr8.3:57384301-57384320 | MS.gene88431:intron | 30.0% |
| !!! | AAGTTTTGAAGACTATATGG+TGG | + | chr8.3:57384569-57384588 | None:intergenic | 30.0% |
| !!! | AGGGATTTTAAAGCAAAAAG+TGG | - | chr8.3:57383889-57383908 | MS.gene88431:intron | 30.0% |
| !!! | TTAAGAAGCTTTTGAGTTTG+AGG | + | chr8.3:57384791-57384810 | None:intergenic | 30.0% |
| AACCTGTTATAGTAGGGTAA+GGG | - | chr8.3:57383433-57383452 | MS.gene88431:intron | 35.0% | |
| AAGCATGAACCTGTTATAGT+AGG | - | chr8.3:57383426-57383445 | MS.gene88431:intron | 35.0% | |
| ACCAGAAAACTGGTCAAAAT+GGG | - | chr8.3:57382909-57382928 | MS.gene88431:CDS | 35.0% | |
| AGAGTTGAATTTGGTATCTC+AGG | - | chr8.3:57384448-57384467 | MS.gene88431:intron | 35.0% | |
| AGCATGAACCTGTTATAGTA+GGG | - | chr8.3:57383427-57383446 | MS.gene88431:intron | 35.0% | |
| AGTTGCCTGAACAATTTCTA+TGG | - | chr8.3:57384249-57384268 | MS.gene88431:intron | 35.0% | |
| ATGGGACTAATACCAAAAAG+TGG | + | chr8.3:57383508-57383527 | None:intergenic | 35.0% | |
| CAACAAGGACCTAAAGTAAA+AGG | - | chr8.3:57383826-57383845 | MS.gene88431:intron | 35.0% | |
| CACATGTTTCACATAATGCA+GGG | - | chr8.3:57384097-57384116 | MS.gene88431:intron | 35.0% | |
| CAGAAAAGGTCTCAAAAACA+AGG | + | chr8.3:57384823-57384842 | None:intergenic | 35.0% | |
| CAGAATTAGAGTTGCATGTA+AGG | + | chr8.3:57384360-57384379 | None:intergenic | 35.0% | |
| CAGAGACATTCAATTCTTAC+TGG | - | chr8.3:57384014-57384033 | MS.gene88431:intron | 35.0% | |
| CATCACAAGTTTACAACACA+AGG | - | chr8.3:57384691-57384710 | MS.gene88431:intron | 35.0% | |
| CCTTATGAAACAACTATTGG+GGG | - | chr8.3:57383748-57383767 | MS.gene88431:intron | 35.0% | |
| CTTATGAAACAACTATTGGG+GGG | - | chr8.3:57383749-57383768 | MS.gene88431:intron | 35.0% | |
| GAAGTGTATGTTTGGTTGAA+CGG | + | chr8.3:57385626-57385645 | None:intergenic | 35.0% | |
| GAGTTGAATTTGGTATCTCA+GGG | - | chr8.3:57384449-57384468 | MS.gene88431:intron | 35.0% | |
| GCAAAAAGTGGTAGATTTGT+TGG | - | chr8.3:57383901-57383920 | MS.gene88431:intron | 35.0% | |
| GTTGCAAATCTCATGTTCAA+CGG | - | chr8.3:57385867-57385886 | MS.gene88431:CDS | 35.0% | |
| GTTGTCAGACCTATAAACAA+AGG | + | chr8.3:57385805-57385824 | None:intergenic | 35.0% | |
| TCACATGTTTCACATAATGC+AGG | - | chr8.3:57384096-57384115 | MS.gene88431:intron | 35.0% | |
| TCATTGGAGCCAAAACAAAA+TGG | - | chr8.3:57383387-57383406 | MS.gene88431:intron | 35.0% | |
| TCCAAATACTCTTGTCTATG+TGG | - | chr8.3:57384600-57384619 | MS.gene88431:CDS | 35.0% | |
| TCTTGAGGCAATAATTTCAC+AGG | - | chr8.3:57385232-57385251 | MS.gene88431:intron | 35.0% | |
| TGATGATTGCTTGAACATAG+AGG | - | chr8.3:57384378-57384397 | MS.gene88431:CDS | 35.0% | |
| TTAGGTGAATTGTAACCTTC+AGG | + | chr8.3:57382946-57382965 | None:intergenic | 35.0% | |
| TTCATGCTTATAGAGTTGTG+CGG | + | chr8.3:57383415-57383434 | None:intergenic | 35.0% | |
| ! | ATAGAGCATTCAATTTCCAC+TGG | + | chr8.3:57383328-57383347 | None:intergenic | 35.0% |
| !! | AAGTGGTAGATTTGTTGGTA+CGG | - | chr8.3:57383906-57383925 | MS.gene88431:intron | 35.0% |
| !! | ACATTTGGTCTTTGCTGTTT+CGG | - | chr8.3:57383656-57383675 | MS.gene88431:intron | 35.0% |
| !! | ACTTCTGGGATTAATATGCT+TGG | - | chr8.3:57383216-57383235 | MS.gene88431:intron | 35.0% |
| !! | TTGTTTGAGTTTTCAGCACA+GGG | + | chr8.3:57384143-57384162 | None:intergenic | 35.0% |
| !!! | ACTTTTGGTTCTTGCTGTTT+TGG | - | chr8.3:57383573-57383592 | MS.gene88431:CDS | 35.0% |
| AAAGGTGACCAAAGACAACA+AGG | - | chr8.3:57383811-57383830 | MS.gene88431:intron | 40.0% | |
| AACGAACGATTTCGTTGTAC+CGG | - | chr8.3:57382855-57382874 | MS.gene88431:CDS | 40.0% | |
| ATCTACACTGCAGAATCTTG+AGG | - | chr8.3:57385217-57385236 | MS.gene88431:intron | 40.0% | |
| ATGCAAAGCATACTCATGCT+AGG | + | chr8.3:57383294-57383313 | None:intergenic | 40.0% | |
| ATTCAAACTTGACTCCATCG+CGG | + | chr8.3:57383032-57383051 | None:intergenic | 40.0% | |
| ATTCCAGACACTCCAAATCT+TGG | - | chr8.3:57385136-57385155 | MS.gene88431:intron | 40.0% | |
| CACCAGAAAACTGGTCAAAA+TGG | - | chr8.3:57382908-57382927 | MS.gene88431:CDS | 40.0% | |
| CCAGAAAACTGGTCAAAATG+GGG | - | chr8.3:57382910-57382929 | MS.gene88431:intron | 40.0% | |
| GAACCTGTTATAGTAGGGTA+AGG | - | chr8.3:57383432-57383451 | MS.gene88431:intron | 40.0% | |
| GATCATTCTGAGCAATTCAG+TGG | - | chr8.3:57385158-57385177 | MS.gene88431:intron | 40.0% | |
| GATGTATTGTATCTCTGGCA+AGG | + | chr8.3:57385396-57385415 | None:intergenic | 40.0% | |
| GCACATTAAATCAGATGCGA+AGG | + | chr8.3:57385282-57385301 | None:intergenic | 40.0% | |
| GCGATCAAGATTTAATGGCT+AGG | - | chr8.3:57382878-57382897 | MS.gene88431:CDS | 40.0% | |
| GCTCAGAATGATCCAAGATT+TGG | + | chr8.3:57385151-57385170 | None:intergenic | 40.0% | |
| GTACAAGAAAATGTCATCGG+TGG | + | chr8.3:57383187-57383206 | None:intergenic | 40.0% | |
| GTCTGACAACAAGAAACCAA+TGG | - | chr8.3:57385815-57385834 | MS.gene88431:CDS | 40.0% | |
| TCGATTGACAGTGAGATTGT+CGG | - | chr8.3:57385535-57385554 | MS.gene88431:intron | 40.0% | |
| TCTAGCAGTTCAAGTGTATG+TGG | - | chr8.3:57383075-57383094 | MS.gene88431:intron | 40.0% | |
| TGGGGAATAAATACACCTGA+AGG | - | chr8.3:57382928-57382947 | MS.gene88431:intron | 40.0% | |
| TGTACACAAGCGTAACTTCT+GGG | - | chr8.3:57383202-57383221 | MS.gene88431:intron | 40.0% | |
| TTCGGTTGTATCTGAATCCA+TGG | + | chr8.3:57382980-57382999 | None:intergenic | 40.0% | |
| TTGTACACAAGCGTAACTTC+TGG | - | chr8.3:57383201-57383220 | MS.gene88431:intron | 40.0% | |
| ! | AGAGTTGCATGTAAGGTACT+CGG | + | chr8.3:57384353-57384372 | None:intergenic | 40.0% |
| ! | AGATTCATGTTTTACCACCG+CGG | + | chr8.3:57384516-57384535 | None:intergenic | 40.0% |
| ! | CAATTCTTACTGGCTACCAT+AGG | - | chr8.3:57384024-57384043 | MS.gene88431:intron | 40.0% |
| ! | CCCCCAATAGTTGTTTCATA+AGG | + | chr8.3:57383751-57383770 | None:intergenic | 40.0% |
| ! | CTTTAGGTCCTTGTTGTCTT+TGG | + | chr8.3:57383822-57383841 | None:intergenic | 40.0% |
| ! | GTACAACAAATGACTTGTGC+AGG | + | chr8.3:57384626-57384645 | None:intergenic | 40.0% |
| !! | ATGGATTGGTACTATGGATG+TGG | - | chr8.3:57382832-57382851 | MS.gene88431:CDS | 40.0% |
| !! | CTTGTTTGAGTTTTCAGCAC+AGG | + | chr8.3:57384144-57384163 | None:intergenic | 40.0% |
| !! | GATGAAGCATTGACATAGAC+AGG | + | chr8.3:57385020-57385039 | None:intergenic | 40.0% |
| !! | GCCACATAGACAAGAGTATT+TGG | + | chr8.3:57384604-57384623 | None:intergenic | 40.0% |
| !! | TGCATTTTAGCAAAGTCCAG+TGG | - | chr8.3:57383309-57383328 | MS.gene88431:CDS | 40.0% |
| !! | TGTGCGGAACCATTTTGTTT+TGG | + | chr8.3:57383399-57383418 | None:intergenic | 40.0% |
| !! | TTTGACCAGTTTTCTGGTGA+TGG | + | chr8.3:57382907-57382926 | None:intergenic | 40.0% |
| !!! | AAGGGCTGCTATTTTCTTTG+AGG | - | chr8.3:57383451-57383470 | MS.gene88431:intron | 40.0% |
| !!! | GTATTGCTGCATTGGTTTTC+AGG | + | chr8.3:57384182-57384201 | None:intergenic | 40.0% |
| AAAGGAGAAAGGGAGTAGCA+TGG | + | chr8.3:57384858-57384877 | None:intergenic | 45.0% | |
| AACCAATGCAGCAATACACC+TGG | - | chr8.3:57384185-57384204 | MS.gene88431:intron | 45.0% | |
| AAGGAGAAAGGGAGTAGCAT+GGG | + | chr8.3:57384857-57384876 | None:intergenic | 45.0% | |
| AATGTAGTAGAGGACCTGGA+TGG | - | chr8.3:57385418-57385437 | MS.gene88431:intron | 45.0% | |
| ACCGGGCGATCAAGATTTAA+TGG | - | chr8.3:57382873-57382892 | MS.gene88431:CDS | 45.0% | |
| ACGAACGATTTCGTTGTACC+GGG | - | chr8.3:57382856-57382875 | MS.gene88431:CDS | 45.0% | |
| AGCAGTTCAAGTGTATGTGG+AGG | - | chr8.3:57383078-57383097 | MS.gene88431:intron | 45.0% | |
| AGCCCTTACCCTACTATAAC+AGG | + | chr8.3:57383438-57383457 | None:intergenic | 45.0% | |
| ATGTCGTGTCAGTGTGATAC+GGG | + | chr8.3:57384906-57384925 | None:intergenic | 45.0% | |
| CAGTGAGATTGTCGGAATCA+CGG | - | chr8.3:57385543-57385562 | MS.gene88431:CDS | 45.0% | |
| CAGTTCACAATGAAGCCTTG+AGG | - | chr8.3:57385473-57385492 | MS.gene88431:intron | 45.0% | |
| CATGTCGTGTCAGTGTGATA+CGG | + | chr8.3:57384907-57384926 | None:intergenic | 45.0% | |
| CGGTGAGTTTGGCAAAATCA+CGG | + | chr8.3:57385606-57385625 | None:intergenic | 45.0% | |
| GCCATTAAATCTTGATCGCC+CGG | + | chr8.3:57382877-57382896 | None:intergenic | 45.0% | |
| GGGGAACAGTTACACAGAAA+AGG | + | chr8.3:57384837-57384856 | None:intergenic | 45.0% | |
| GTATTGTATCTCTGGCAAGG+CGG | + | chr8.3:57385393-57385412 | None:intergenic | 45.0% | |
| GTCAATGTCAGTGTCATCTC+TGG | - | chr8.3:57384990-57385009 | MS.gene88431:intron | 45.0% | |
| GTTTGGTTGAACGGTGAGTT+TGG | + | chr8.3:57385617-57385636 | None:intergenic | 45.0% | |
| TACCAGGTGTATTGCTGCAT+TGG | + | chr8.3:57384190-57384209 | None:intergenic | 45.0% | |
| TCAGAATGTAGTAGAGGACC+TGG | - | chr8.3:57385414-57385433 | MS.gene88431:intron | 45.0% | |
| TCATTCTGCAGTTCACCTGA+TGG | + | chr8.3:57384319-57384338 | None:intergenic | 45.0% | |
| ! | CTGTTGGTCTCTGATTCCAT+TGG | + | chr8.3:57385834-57385853 | None:intergenic | 45.0% |
| ! | GATCCAAGATTTGGAGTGTC+TGG | + | chr8.3:57385142-57385161 | None:intergenic | 45.0% |
| ! | GATTCATGTTTTACCACCGC+GGG | + | chr8.3:57384515-57384534 | None:intergenic | 45.0% |
| ! | TGGTGATGTTAGCATGCAAG+AGG | - | chr8.3:57385438-57385457 | MS.gene88431:intron | 45.0% |
| ! | TTTGAGTTTGAGGCCCTGAT+TGG | + | chr8.3:57384781-57384800 | None:intergenic | 45.0% |
| !! | CCCCATTTTGACCAGTTTTC+TGG | + | chr8.3:57382913-57382932 | None:intergenic | 45.0% |
| AACGGTGAAAGTTTCCGCGA+TGG | - | chr8.3:57383015-57383034 | MS.gene88431:intron | 50.0% | |
| AACTGCTCTGTCGACACTGT+TGG | + | chr8.3:57385850-57385869 | None:intergenic | 50.0% | |
| AGGAGAAAGGGAGTAGCATG+GGG | + | chr8.3:57384856-57384875 | None:intergenic | 50.0% | |
| CATGCAAGAGGCAATGCCAT+GGG | - | chr8.3:57385450-57385469 | MS.gene88431:intron | 50.0% | |
| CGACATGACTCCGACACATT+TGG | - | chr8.3:57384920-57384939 | MS.gene88431:intron | 50.0% | |
| GCATGCTAACATCACCATCC+AGG | + | chr8.3:57385435-57385454 | None:intergenic | 50.0% | |
| GCTTCATTGTGAACTGCCCA+TGG | + | chr8.3:57385469-57385488 | None:intergenic | 50.0% | |
| GGAATCACGGTCAGACACTT+TGG | - | chr8.3:57385556-57385575 | MS.gene88431:CDS | 50.0% | |
| GGCATCCATCACCAGAAAAC+TGG | - | chr8.3:57382899-57382918 | MS.gene88431:CDS | 50.0% | |
| CAAGGCGGTAAAGTGCATCG+CGG | + | chr8.3:57385378-57385397 | None:intergenic | 55.0% | |
| GCATGCAAGAGGCAATGCCA+TGG | - | chr8.3:57385449-57385468 | MS.gene88431:intron | 55.0% | |
| AACCACTAGCGCTAGACCCG+CGG | - | chr8.3:57384496-57384515 | MS.gene88431:intron | 60.0% | |
| GCGGGTCTAGCGCTAGTGGT+TGG | + | chr8.3:57384497-57384516 | None:intergenic | 65.0% | |
| CACCGCGGGTCTAGCGCTAG+TGG | + | chr8.3:57384501-57384520 | None:intergenic | 70.0% | |
| CACTAGCGCTAGACCCGCGG+TGG | - | chr8.3:57384499-57384518 | MS.gene88431:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 57382832 | 57385911 | 57382832 | ID=MS.gene88431 |
| chr8.3 | mRNA | 57382832 | 57385911 | 57382832 | ID=MS.gene88431.t1;Parent=MS.gene88431 |
| chr8.3 | exon | 57385541 | 57385911 | 57385541 | ID=MS.gene88431.t1.exon1;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57385541 | 57385911 | 57385541 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| chr8.3 | exon | 57384537 | 57384625 | 57384537 | ID=MS.gene88431.t1.exon2;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57384537 | 57384625 | 57384537 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| chr8.3 | exon | 57384344 | 57384420 | 57384344 | ID=MS.gene88431.t1.exon3;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57384344 | 57384420 | 57384344 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| chr8.3 | exon | 57383490 | 57383600 | 57383490 | ID=MS.gene88431.t1.exon4;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57383490 | 57383600 | 57383490 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| chr8.3 | exon | 57383249 | 57383394 | 57383249 | ID=MS.gene88431.t1.exon5;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57383249 | 57383394 | 57383249 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| chr8.3 | exon | 57382832 | 57382928 | 57382832 | ID=MS.gene88431.t1.exon6;Parent=MS.gene88431.t1 |
| chr8.3 | CDS | 57382832 | 57382928 | 57382832 | ID=cds.MS.gene88431.t1;Parent=MS.gene88431.t1 |
| Gene Sequence |
| Protein sequence |
