Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063813.t1 | XP_003627969.2 | 90.5 | 317 | 9 | 1 | 1 | 317 | 1 | 296 | 5.00E-159 | 570.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063813.t1 | Q9LHH5 | 23.9 | 305 | 177 | 8 | 7 | 310 | 3 | 253 | 1.7e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063813.t1 | G7LHM0 | 90.5 | 317 | 9 | 1 | 1 | 317 | 1 | 296 | 3.6e-159 | 570.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene063813 | 0.839598 | 1.44E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016539 | MS.gene063813 | PPI |
| MS.gene88431 | MS.gene063813 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063813.t1 | MTR_8g040640 | 90.536 | 317 | 9 | 1 | 1 | 317 | 1 | 296 | 0.0 | 588 |
| MS.gene063813.t1 | MTR_8g040640 | 95.361 | 194 | 9 | 0 | 124 | 317 | 16 | 209 | 1.73e-136 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGAAAACTGGTCAAAA+TGG | 0.212731 | 8.1:-63324467 | MS.gene063813:CDS |
| ACCGGGCGATCAAGATTTAA+TGG | 0.329908 | 8.1:-63324502 | MS.gene063813:CDS |
| TTAGGTGAATTGTAACCTTC+AGG | 0.333912 | 8.1:+63324432 | None:intergenic |
| GCTCAGAATGATCCAAGATT+TGG | 0.336181 | 8.1:+63322213 | None:intergenic |
| TCATTGGAGCCAAAACAAAA+TGG | 0.344425 | 8.1:-63323988 | MS.gene063813:intron |
| ATTCCAGACACTCCAAATCT+TGG | 0.354694 | 8.1:-63322225 | MS.gene063813:intron |
| GTTGAAATTGAATTCTAATT+CGG | 0.357412 | 8.1:+63324380 | None:intergenic |
| TTAGCCATGGATTGGTACTA+TGG | 0.366474 | 8.1:-63324549 | None:intergenic |
| AAGCATGAACCTGTTATAGT+AGG | 0.374703 | 8.1:-63323949 | MS.gene063813:CDS |
| GCTAGATTGATCTTTATCAT+AGG | 0.391039 | 8.1:+63324317 | None:intergenic |
| AGCCCTTACCCTACTATAAC+AGG | 0.391467 | 8.1:+63323940 | None:intergenic |
| ACCAGAAAACTGGTCAAAAT+GGG | 0.398356 | 8.1:-63324466 | MS.gene063813:CDS |
| GGCATCCATCACCAGAAAAC+TGG | 0.409517 | 8.1:-63324476 | MS.gene063813:CDS |
| TACCAGGTGTATTGCTGCAT+TGG | 0.434993 | 8.1:+63323190 | None:intergenic |
| GCCATTAAATCTTGATCGCC+CGG | 0.481344 | 8.1:+63324501 | None:intergenic |
| ACAGACTATTAGCCATGGAT+TGG | 0.499884 | 8.1:-63324557 | None:intergenic |
| CAACAAGAAACCAATGGAAT+CGG | 0.507624 | 8.1:-63321545 | MS.gene063813:CDS |
| AACGAACGATTTCGTTGTAC+CGG | 0.507721 | 8.1:-63324520 | MS.gene063813:CDS |
| AGCATGAACCTGTTATAGTA+GGG | 0.507757 | 8.1:-63323948 | MS.gene063813:intron |
| CTGTTGGTCTCCGATTCCAT+TGG | 0.517044 | 8.1:+63321535 | None:intergenic |
| TCTTGAGGCAATAATTTCAC+AGG | 0.518119 | 8.1:-63322129 | MS.gene063813:intron |
| TTCGGTTGTATCTGAATCCA+TGG | 0.525837 | 8.1:+63324398 | None:intergenic |
| TGATGATTGCTTGAACATAG+AGG | 0.536604 | 8.1:-63322999 | MS.gene063813:intron |
| GCATGCTAACATCACCATCC+AGG | 0.540288 | 8.1:+63321929 | None:intergenic |
| TCTAGCAGTTCAAGTGTATG+TGG | 0.542953 | 8.1:-63324300 | MS.gene063813:CDS |
| GAATTAGAATTCAATTTCAA+CGG | 0.553537 | 8.1:-63324378 | MS.gene063813:CDS |
| GATCATTCTGAGCAATTCAG+TGG | 0.574655 | 8.1:-63322203 | MS.gene063813:CDS |
| ACGAACGATTTCGTTGTACC+GGG | 0.575268 | 8.1:-63324519 | MS.gene063813:CDS |
| CATGCAAGAGGCAATGCCAT+GGG | 0.575721 | 8.1:-63321911 | MS.gene063813:CDS |
| GCTTCATTGTGAACTGCCCA+TGG | 0.576976 | 8.1:+63321895 | None:intergenic |
| AACTGCTCTGTCGACACTGT+TGG | 0.577880 | 8.1:+63321519 | None:intergenic |
| GCATGCAAGAGGCAATGCCA+TGG | 0.580050 | 8.1:-63321912 | MS.gene063813:CDS |
| ATGGATTGGTACTATGGATG+TGG | 0.584308 | 8.1:-63324543 | MS.gene063813:CDS |
| AACGGTGAAAGTTTCCGCGA+TGG | 0.584616 | 8.1:-63324360 | MS.gene063813:CDS |
| TCAGAATGTAGTAGAGGACC+TGG | 0.590986 | 8.1:-63321947 | MS.gene063813:CDS |
| TGGGGAATAAATACACCTGA+AGG | 0.602852 | 8.1:-63324447 | MS.gene063813:CDS |
| GCGATCAAGATTTAATGGCT+AGG | 0.605112 | 8.1:-63324497 | MS.gene063813:CDS |
| GTCTGACAACAAGAAACCAA+TGG | 0.611234 | 8.1:-63321551 | MS.gene063813:CDS |
| ATCTACACTGCAGAATCTTG+AGG | 0.615256 | 8.1:-63322144 | MS.gene063813:CDS |
| AAAACATCAGAATGTAGTAG+AGG | 0.618804 | 8.1:-63321953 | MS.gene063813:CDS |
| AGAGTTGCATGTAAGATACT+CGG | 0.620268 | 8.1:+63323027 | None:intergenic |
| GGATCAGCATTCACAATATG+CGG | 0.622909 | 8.1:+63321474 | None:intergenic |
| AACCAATGCAGCAATACACC+TGG | 0.625548 | 8.1:-63323192 | MS.gene063813:intron |
| ACATCCATAGTACCAATCCA+TGG | 0.634261 | 8.1:+63324545 | None:intergenic |
| CCAGAAAACTGGTCAAAATG+GGG | 0.639085 | 8.1:-63324465 | MS.gene063813:CDS |
| TGTGTACAAGAAAATGTCAT+CGG | 0.643710 | 8.1:+63324188 | None:intergenic |
| GTTGCAAATCTCATGTTCAA+CGG | 0.646462 | 8.1:-63321499 | MS.gene063813:CDS |
| AATGTAGTAGAGGACCTGGA+TGG | 0.664719 | 8.1:-63321943 | MS.gene063813:CDS |
| AGCAGTTCAAGTGTATGTGG+AGG | 0.666769 | 8.1:-63324297 | MS.gene063813:CDS |
| CAGTTCACAATGAAGCCTTG+AGG | 0.672028 | 8.1:-63321888 | MS.gene063813:intron |
| TTCATGCTTATAGAGTTGTG+CGG | 0.687533 | 8.1:+63323963 | None:intergenic |
| TGGTGATGTTAGCATGCAAG+AGG | 0.691812 | 8.1:-63321923 | MS.gene063813:CDS |
| GTACAAGAAAATGTCATCGG+TGG | 0.696106 | 8.1:+63324191 | None:intergenic |
| ATTCAAACTTGACTCCATCG+CGG | 0.769037 | 8.1:+63324346 | None:intergenic |
| CAAGGCGGTAAAGTGCATCG+CGG | 0.772895 | 8.1:+63321986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGAAATTCTTTTTTAA+TGG | + | chr8.1:63322170-63322189 | None:intergenic | 10.0% |
| !!! | AAATGAAATTCTTTTTTAAT+GGG | + | chr8.1:63322169-63322188 | None:intergenic | 10.0% |
| !! | TAAAAAGTAGTATATTTGAA+AGG | + | chr8.1:63322280-63322299 | None:intergenic | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | - | chr8.1:63322284-63322303 | MS.gene063813:intron | 15.0% |
| !!! | ATATACTACTTTTTTACTTT+TGG | - | chr8.1:63322201-63322220 | MS.gene063813:CDS | 15.0% |
| !!! | TTCAAAATGAACAAATTTTA+CGG | + | chr8.1:63322333-63322352 | None:intergenic | 15.0% |
| !! | AAAGTCCAATTAAAAGAAAA+AGG | + | chr8.1:63323535-63323554 | None:intergenic | 20.0% |
| !! | AAGATAAATATGGTGAAATT+TGG | + | chr8.1:63322010-63322029 | None:intergenic | 20.0% |
| !! | AATTAAAAGAAAAAGGAGAA+AGG | + | chr8.1:63323528-63323547 | None:intergenic | 20.0% |
| !! | ACCATATTTATCTTTATCAT+TGG | - | chr8.1:63322016-63322035 | MS.gene063813:intron | 20.0% |
| !! | ATTAAAAGAAAAAGGAGAAA+GGG | + | chr8.1:63323527-63323546 | None:intergenic | 20.0% |
| !! | GAATTAGAATTCAATTTCAA+CGG | - | chr8.1:63321642-63321661 | MS.gene063813:intron | 20.0% |
| !! | GTTGAAATTGAATTCTAATT+CGG | + | chr8.1:63321643-63321662 | None:intergenic | 20.0% |
| !! | TCCAATGATAAAGATAAATA+TGG | + | chr8.1:63322020-63322039 | None:intergenic | 20.0% |
| !!! | ATCGAACTATATTTTTTTAC+AGG | + | chr8.1:63322257-63322276 | None:intergenic | 20.0% |
| !!! | CAAAACGATATTTTTTTACA+GGG | - | chr8.1:63322513-63322532 | MS.gene063813:intron | 20.0% |
| !!! | TCAAAACGATATTTTTTTAC+AGG | - | chr8.1:63322512-63322531 | MS.gene063813:intron | 20.0% |
| !!! | TCGAACTATATTTTTTTACA+GGG | + | chr8.1:63322256-63322275 | None:intergenic | 20.0% |
| !!! | TTTCTCCTTTTTCTTTTAAT+TGG | - | chr8.1:63323527-63323546 | MS.gene063813:intron | 20.0% |
| ! | AAAAAAGTAGTATATTTGCG+AGG | + | chr8.1:63322196-63322215 | None:intergenic | 25.0% |
| ! | AATCTAAATCATATACCTCA+AGG | + | chr8.1:63324150-63324169 | None:intergenic | 25.0% |
| ! | CAAAAAGTGGTATATTTACA+TGG | + | chr8.1:63322138-63322157 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTAAGACTATA+TGG | + | chr8.1:63323215-63323234 | None:intergenic | 25.0% |
| ! | CATGATGATTATTATCATAC+AGG | + | chr8.1:63321895-63321914 | None:intergenic | 25.0% |
| ! | TTGAATTAATTTCATGCCTA+TGG | + | chr8.1:63322686-63322705 | None:intergenic | 25.0% |
| ! | TTTACAAAATCAAGATCATC+AGG | + | chr8.1:63324366-63324385 | None:intergenic | 25.0% |
| !! | AAAGGTGTAGTATATTTGTA+AGG | - | chr8.1:63322487-63322506 | MS.gene063813:intron | 25.0% |
| !! | AGAAAATAGAAGTGTATGTT+TGG | + | chr8.1:63324293-63324312 | None:intergenic | 25.0% |
| !! | TATACTACACCTTTTACTTT+AGG | + | chr8.1:63322481-63322500 | None:intergenic | 25.0% |
| !! | TATTTTGCAAAACATGCAAA+TGG | - | chr8.1:63323714-63323733 | MS.gene063813:intron | 25.0% |
| !! | TCAAACACATACTTTAAGTT+TGG | + | chr8.1:63324320-63324339 | None:intergenic | 25.0% |
| !!! | CATGTAAATATACCACTTTT+TGG | - | chr8.1:63322136-63322155 | MS.gene063813:CDS | 25.0% |
| !!! | GTTTTCAGGATAAAAGTAAA+AGG | + | chr8.1:63322811-63322830 | None:intergenic | 25.0% |
| AAAAACATCATTGCAAAGCA+TGG | + | chr8.1:63323322-63323341 | None:intergenic | 30.0% | |
| AAAACATCAGAATGTAGTAG+AGG | - | chr8.1:63324067-63324086 | MS.gene063813:intron | 30.0% | |
| AAGTTCTTAAGACTATATGG+TGG | + | chr8.1:63323212-63323231 | None:intergenic | 30.0% | |
| ACCTAAAAATTTCATGACCA+TGG | - | chr8.1:63321605-63321624 | MS.gene063813:intron | 30.0% | |
| AGAAAAGGTCTCAAAAACAA+GGG | + | chr8.1:63323481-63323500 | None:intergenic | 30.0% | |
| AGATGTTGCATTACACTATA+AGG | + | chr8.1:63323753-63323772 | None:intergenic | 30.0% | |
| AGTCCTTATGAAACAACTAT+TGG | - | chr8.1:63322388-63322407 | MS.gene063813:intron | 30.0% | |
| ATTAAGCTGTTTATCCAATC+AGG | - | chr8.1:63323423-63323442 | MS.gene063813:intron | 30.0% | |
| CAATACCATAGAAATTGTTC+AGG | + | chr8.1:63322900-63322919 | None:intergenic | 30.0% | |
| GCTAGATTGATCTTTATCAT+AGG | + | chr8.1:63321706-63321725 | None:intergenic | 30.0% | |
| GTCCTTATGAAACAACTATT+GGG | - | chr8.1:63322389-63322408 | MS.gene063813:intron | 30.0% | |
| GTGTAAAAAGAGTAATTACC+AGG | + | chr8.1:63322849-63322868 | None:intergenic | 30.0% | |
| TATTGCACAGACTAATTCAA+AGG | - | chr8.1:63322436-63322455 | MS.gene063813:intron | 30.0% | |
| TCCTTATGAAACAACTATTG+GGG | - | chr8.1:63322390-63322409 | MS.gene063813:intron | 30.0% | |
| TGAACTAGTTAAGAGAGAAA+GGG | + | chr8.1:63323992-63324011 | None:intergenic | 30.0% | |
| TGTGTACAAGAAAATGTCAT+CGG | + | chr8.1:63321835-63321854 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCAATCA+GGG | - | chr8.1:63323424-63323443 | MS.gene063813:intron | 30.0% | |
| TTACGATTAAGAGTTGAGTT+TGG | - | chr8.1:63323082-63323101 | MS.gene063813:intron | 30.0% | |
| TTGAACTAGTTAAGAGAGAA+AGG | + | chr8.1:63323993-63324012 | None:intergenic | 30.0% | |
| TTGAATGTAACCAAATGTGT+CGG | + | chr8.1:63323592-63323611 | None:intergenic | 30.0% | |
| ! | ATTCTGATGTTTTGTATCTC+TGG | + | chr8.1:63324060-63324079 | None:intergenic | 30.0% |
| ! | CAAATGCTACCTTTGTTTAT+AGG | - | chr8.1:63324447-63324466 | MS.gene063813:CDS | 30.0% |
| ! | CTGAGGTTTACATATGTTTT+TGG | - | chr8.1:63322111-63322130 | MS.gene063813:intron | 30.0% |
| ! | TCCATGGTCATGAAATTTTT+AGG | + | chr8.1:63321609-63321628 | None:intergenic | 30.0% |
| !! | TGCATTCTTTTATTTCCATC+AGG | - | chr8.1:63322944-63322963 | MS.gene063813:intron | 30.0% |
| !!! | AGGGATTTTAAAGCAAAAAG+TGG | - | chr8.1:63322532-63322551 | MS.gene063813:intron | 30.0% |
| !!! | TTAAGAAGCTTTTGAGTTTG+AGG | + | chr8.1:63323450-63323469 | None:intergenic | 30.0% |
| AACCTGTTATAGTAGGGTAA+GGG | - | chr8.1:63322078-63322097 | MS.gene063813:intron | 35.0% | |
| AAGCATGAACCTGTTATAGT+AGG | - | chr8.1:63322071-63322090 | MS.gene063813:intron | 35.0% | |
| ACCAGAAAACTGGTCAAAAT+GGG | - | chr8.1:63321554-63321573 | MS.gene063813:CDS | 35.0% | |
| AGAGTTGCATGTAAGATACT+CGG | + | chr8.1:63322996-63323015 | None:intergenic | 35.0% | |
| AGCATGAACCTGTTATAGTA+GGG | - | chr8.1:63322072-63322091 | MS.gene063813:intron | 35.0% | |
| AGTTGCCTGAACAATTTCTA+TGG | - | chr8.1:63322892-63322911 | MS.gene063813:intron | 35.0% | |
| CAACAAGAAACCAATGGAAT+CGG | - | chr8.1:63324475-63324494 | MS.gene063813:CDS | 35.0% | |
| CAACAAGGACCTAAAGTAAA+AGG | - | chr8.1:63322469-63322488 | MS.gene063813:intron | 35.0% | |
| CACATGTTTCACATAATGCA+GGG | - | chr8.1:63322740-63322759 | MS.gene063813:intron | 35.0% | |
| CAGAAAAGGTCTCAAAAACA+AGG | + | chr8.1:63323482-63323501 | None:intergenic | 35.0% | |
| CAGAGACATTCAATTCTTAC+TGG | - | chr8.1:63322657-63322676 | MS.gene063813:intron | 35.0% | |
| CAGCATGAAATGACTTATAC+TGG | + | chr8.1:63323291-63323310 | None:intergenic | 35.0% | |
| CCTTATGAAACAACTATTGG+GGG | - | chr8.1:63322391-63322410 | MS.gene063813:intron | 35.0% | |
| CTTATGAAACAACTATTGGG+GGG | - | chr8.1:63322392-63322411 | MS.gene063813:intron | 35.0% | |
| GAAGTGTATGTTTGGTTGAA+CGG | + | chr8.1:63324285-63324304 | None:intergenic | 35.0% | |
| GCAAAAAGTGGTAGATTTGT+TGG | - | chr8.1:63322544-63322563 | MS.gene063813:intron | 35.0% | |
| GTTGCAAATCTCATGTTCAA+CGG | - | chr8.1:63324521-63324540 | MS.gene063813:CDS | 35.0% | |
| GTTGTCAGACCTATAAACAA+AGG | + | chr8.1:63324459-63324478 | None:intergenic | 35.0% | |
| TCACATGTTTCACATAATGC+AGG | - | chr8.1:63322739-63322758 | MS.gene063813:intron | 35.0% | |
| TCATTGGAGCCAAAACAAAA+TGG | - | chr8.1:63322032-63322051 | MS.gene063813:intron | 35.0% | |
| TCTTGAGGCAATAATTTCAC+AGG | - | chr8.1:63323891-63323910 | MS.gene063813:intron | 35.0% | |
| TGATGATTGCTTGAACATAG+AGG | - | chr8.1:63323021-63323040 | MS.gene063813:CDS | 35.0% | |
| TTAGGTGAATTGTAACCTTC+AGG | + | chr8.1:63321591-63321610 | None:intergenic | 35.0% | |
| TTCATGCTTATAGAGTTGTG+CGG | + | chr8.1:63322060-63322079 | None:intergenic | 35.0% | |
| ! | AGATTCATGTTTTACCACCA+CGG | + | chr8.1:63323159-63323178 | None:intergenic | 35.0% |
| ! | ATAGAGCATTCAATTTCCAC+TGG | + | chr8.1:63321973-63321992 | None:intergenic | 35.0% |
| ! | GTGTATAACAAATGACTTGC+AGG | + | chr8.1:63323269-63323288 | None:intergenic | 35.0% |
| !! | AAGTGGTAGATTTGTTGGTA+CGG | - | chr8.1:63322549-63322568 | MS.gene063813:intron | 35.0% |
| !! | ACATTTGGTCTTTGCTGTTT+CGG | - | chr8.1:63322299-63322318 | MS.gene063813:intron | 35.0% |
| !! | ACTTCTGGGATTAATATGCT+TGG | - | chr8.1:63321861-63321880 | MS.gene063813:intron | 35.0% |
| !! | GACACATAGACAAGAGTATT+TGG | + | chr8.1:63323247-63323266 | None:intergenic | 35.0% |
| !! | TTGTTTGAGTTTTCAGCACA+GGG | + | chr8.1:63322786-63322805 | None:intergenic | 35.0% |
| !!! | ACTTTTGGTTCTTGCTGTTT+TGG | - | chr8.1:63322216-63322235 | MS.gene063813:CDS | 35.0% |
| AAAGGTGACCAAAGACAACA+AGG | - | chr8.1:63322454-63322473 | MS.gene063813:intron | 40.0% | |
| AACGAACGATTTCGTTGTAC+CGG | - | chr8.1:63321500-63321519 | MS.gene063813:CDS | 40.0% | |
| AGAGTTGAGTTTGGTATCTC+AGG | - | chr8.1:63323091-63323110 | MS.gene063813:intron | 40.0% | |
| ATCTACACTGCAGAATCTTG+AGG | - | chr8.1:63323876-63323895 | MS.gene063813:intron | 40.0% | |
| ATGCAAAGCATACTCATGCT+AGG | + | chr8.1:63321939-63321958 | None:intergenic | 40.0% | |
| ATGGGACTGATACCAAAAAG+TGG | + | chr8.1:63322151-63322170 | None:intergenic | 40.0% | |
| ATTCAAACTTGACTCCATCG+CGG | + | chr8.1:63321677-63321696 | None:intergenic | 40.0% | |
| ATTCCAGACACTCCAAATCT+TGG | - | chr8.1:63323795-63323814 | MS.gene063813:intron | 40.0% | |
| CACCAGAAAACTGGTCAAAA+TGG | - | chr8.1:63321553-63321572 | MS.gene063813:CDS | 40.0% | |
| CATCACAAGTTCACAACACA+AGG | - | chr8.1:63323350-63323369 | MS.gene063813:intron | 40.0% | |
| CCAGAAAACTGGTCAAAATG+GGG | - | chr8.1:63321555-63321574 | MS.gene063813:intron | 40.0% | |
| GAACCTGTTATAGTAGGGTA+AGG | - | chr8.1:63322077-63322096 | MS.gene063813:intron | 40.0% | |
| GAGTTGAGTTTGGTATCTCA+GGG | - | chr8.1:63323092-63323111 | MS.gene063813:intron | 40.0% | |
| GATCATTCTGAGCAATTCAG+TGG | - | chr8.1:63323817-63323836 | MS.gene063813:intron | 40.0% | |
| GCACATTAAATCAGATGCGA+AGG | + | chr8.1:63323941-63323960 | None:intergenic | 40.0% | |
| GCGATCAAGATTTAATGGCT+AGG | - | chr8.1:63321523-63321542 | MS.gene063813:CDS | 40.0% | |
| GCTCAGAATGATCCAAGATT+TGG | + | chr8.1:63323810-63323829 | None:intergenic | 40.0% | |
| GTACAAGAAAATGTCATCGG+TGG | + | chr8.1:63321832-63321851 | None:intergenic | 40.0% | |
| GTCTGACAACAAGAAACCAA+TGG | - | chr8.1:63324469-63324488 | MS.gene063813:CDS | 40.0% | |
| TCGATTGACAGTGAGATTGT+CGG | - | chr8.1:63324194-63324213 | MS.gene063813:CDS | 40.0% | |
| TCTAGCAGTTCAAGTGTATG+TGG | - | chr8.1:63321720-63321739 | MS.gene063813:intron | 40.0% | |
| TGGGGAATAAATACACCTGA+AGG | - | chr8.1:63321573-63321592 | MS.gene063813:intron | 40.0% | |
| TGTACACAAGCGTAACTTCT+GGG | - | chr8.1:63321847-63321866 | MS.gene063813:intron | 40.0% | |
| TTCGGTTGTATCTGAATCCA+TGG | + | chr8.1:63321625-63321644 | None:intergenic | 40.0% | |
| TTGTACACAAGCGTAACTTC+TGG | - | chr8.1:63321846-63321865 | MS.gene063813:intron | 40.0% | |
| ! | CAATTCTTACTGGCTACCAT+AGG | - | chr8.1:63322667-63322686 | MS.gene063813:intron | 40.0% |
| ! | CCCCCAATAGTTGTTTCATA+AGG | + | chr8.1:63322394-63322413 | None:intergenic | 40.0% |
| ! | CTTTAGGTCCTTGTTGTCTT+TGG | + | chr8.1:63322465-63322484 | None:intergenic | 40.0% |
| ! | GATGTTTTGTATCTCTGGCA+AGG | + | chr8.1:63324055-63324074 | None:intergenic | 40.0% |
| ! | GATTCATGTTTTACCACCAC+GGG | + | chr8.1:63323158-63323177 | None:intergenic | 40.0% |
| ! | GTAAGGGCTACTATTTTCTG+AGG | - | chr8.1:63322094-63322113 | MS.gene063813:intron | 40.0% |
| !! | ATGGATTGGTACTATGGATG+TGG | - | chr8.1:63321477-63321496 | MS.gene063813:CDS | 40.0% |
| !! | CTTGTTTGAGTTTTCAGCAC+AGG | + | chr8.1:63322787-63322806 | None:intergenic | 40.0% |
| !! | GATGAAGCATTGACATAGAC+AGG | + | chr8.1:63323679-63323698 | None:intergenic | 40.0% |
| !! | TGCATTTTAGCAAAGTCCAG+TGG | - | chr8.1:63321954-63321973 | MS.gene063813:CDS | 40.0% |
| !! | TGTGCGGAACCATTTTGTTT+TGG | + | chr8.1:63322044-63322063 | None:intergenic | 40.0% |
| !! | TTTGACCAGTTTTCTGGTGA+TGG | + | chr8.1:63321552-63321571 | None:intergenic | 40.0% |
| !!! | GTATTGCTGCATTGGTTTTC+AGG | + | chr8.1:63322825-63322844 | None:intergenic | 40.0% |
| AAAGGAGAAAGGGAGTAGCA+TGG | + | chr8.1:63323517-63323536 | None:intergenic | 45.0% | |
| AACCAATGCAGCAATACACC+TGG | - | chr8.1:63322828-63322847 | MS.gene063813:intron | 45.0% | |
| AAGGAGAAAGGGAGTAGCAT+GGG | + | chr8.1:63323516-63323535 | None:intergenic | 45.0% | |
| AATGTAGTAGAGGACCTGGA+TGG | - | chr8.1:63324077-63324096 | MS.gene063813:intron | 45.0% | |
| ACCGGGCGATCAAGATTTAA+TGG | - | chr8.1:63321518-63321537 | MS.gene063813:CDS | 45.0% | |
| ACGAACGATTTCGTTGTACC+GGG | - | chr8.1:63321501-63321520 | MS.gene063813:CDS | 45.0% | |
| AGCAGTTCAAGTGTATGTGG+AGG | - | chr8.1:63321723-63321742 | MS.gene063813:intron | 45.0% | |
| AGCCCTTACCCTACTATAAC+AGG | + | chr8.1:63322083-63322102 | None:intergenic | 45.0% | |
| ATGTCGTGTCAGTGTGATAC+GGG | + | chr8.1:63323565-63323584 | None:intergenic | 45.0% | |
| CAGTGAGATTGTCGGAATCA+CGG | - | chr8.1:63324202-63324221 | MS.gene063813:CDS | 45.0% | |
| CAGTTCACAATGAAGCCTTG+AGG | - | chr8.1:63324132-63324151 | MS.gene063813:intron | 45.0% | |
| CATGTCGTGTCAGTGTGATA+CGG | + | chr8.1:63323566-63323585 | None:intergenic | 45.0% | |
| CGGTGAGTTTGGCAAAATCA+CGG | + | chr8.1:63324265-63324284 | None:intergenic | 45.0% | |
| GCCATTAAATCTTGATCGCC+CGG | + | chr8.1:63321522-63321541 | None:intergenic | 45.0% | |
| GGGGAACAGTTACACAGAAA+AGG | + | chr8.1:63323496-63323515 | None:intergenic | 45.0% | |
| GTCAATGTCAGTGTCATCTC+TGG | - | chr8.1:63323649-63323668 | MS.gene063813:intron | 45.0% | |
| GTTTGGTTGAACGGTGAGTT+TGG | + | chr8.1:63324276-63324295 | None:intergenic | 45.0% | |
| TACCAGGTGTATTGCTGCAT+TGG | + | chr8.1:63322833-63322852 | None:intergenic | 45.0% | |
| TCAGAATGTAGTAGAGGACC+TGG | - | chr8.1:63324073-63324092 | MS.gene063813:intron | 45.0% | |
| TCATTCTGCAGTTCACCTGA+TGG | + | chr8.1:63322962-63322981 | None:intergenic | 45.0% | |
| ! | GATCCAAGATTTGGAGTGTC+TGG | + | chr8.1:63323801-63323820 | None:intergenic | 45.0% |
| ! | GTTTTGTATCTCTGGCAAGG+CGG | + | chr8.1:63324052-63324071 | None:intergenic | 45.0% |
| ! | TGGTGATGTTAGCATGCAAG+AGG | - | chr8.1:63324097-63324116 | MS.gene063813:intron | 45.0% |
| ! | TTTGAGTTTGAGGCCCTGAT+TGG | + | chr8.1:63323440-63323459 | None:intergenic | 45.0% |
| !! | CCCCATTTTGACCAGTTTTC+TGG | + | chr8.1:63321558-63321577 | None:intergenic | 45.0% |
| AACGGTGAAAGTTTCCGCGA+TGG | - | chr8.1:63321660-63321679 | MS.gene063813:intron | 50.0% | |
| AACTGCTCTGTCGACACTGT+TGG | + | chr8.1:63324504-63324523 | None:intergenic | 50.0% | |
| AGGAGAAAGGGAGTAGCATG+GGG | + | chr8.1:63323515-63323534 | None:intergenic | 50.0% | |
| CATGCAAGAGGCAATGCCAT+GGG | - | chr8.1:63324109-63324128 | MS.gene063813:intron | 50.0% | |
| CGACATGACACCGACACATT+TGG | - | chr8.1:63323579-63323598 | MS.gene063813:intron | 50.0% | |
| GCATGCTAACATCACCATCC+AGG | + | chr8.1:63324094-63324113 | None:intergenic | 50.0% | |
| GCTTCATTGTGAACTGCCCA+TGG | + | chr8.1:63324128-63324147 | None:intergenic | 50.0% | |
| GGAATCACGGTCAGACACTT+TGG | - | chr8.1:63324215-63324234 | MS.gene063813:CDS | 50.0% | |
| GGCATCCATCACCAGAAAAC+TGG | - | chr8.1:63321544-63321563 | MS.gene063813:CDS | 50.0% | |
| ! | CTGTTGGTCTCCGATTCCAT+TGG | + | chr8.1:63324488-63324507 | None:intergenic | 50.0% |
| CAAGGCGGTAAAGTGCATCG+CGG | + | chr8.1:63324037-63324056 | None:intergenic | 55.0% | |
| GCATGCAAGAGGCAATGCCA+TGG | - | chr8.1:63324108-63324127 | MS.gene063813:intron | 55.0% | |
| AACCACTAGCGCTAGACCCG+TGG | - | chr8.1:63323139-63323158 | MS.gene063813:intron | 60.0% | |
| ACGGGTCTAGCGCTAGTGGT+TGG | + | chr8.1:63323140-63323159 | None:intergenic | 60.0% | |
| CACCACGGGTCTAGCGCTAG+TGG | + | chr8.1:63323144-63323163 | None:intergenic | 65.0% | |
| CACTAGCGCTAGACCCGTGG+TGG | - | chr8.1:63323142-63323161 | MS.gene063813:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 63321477 | 63324565 | 63321477 | ID=MS.gene063813 |
| chr8.1 | mRNA | 63321477 | 63324565 | 63321477 | ID=MS.gene063813.t1;Parent=MS.gene063813 |
| chr8.1 | exon | 63324185 | 63324565 | 63324185 | ID=MS.gene063813.t1.exon1;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63324185 | 63324565 | 63324185 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63323949 | 63324001 | 63323949 | ID=MS.gene063813.t1.exon2;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63323949 | 63324001 | 63323949 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63323193 | 63323281 | 63323193 | ID=MS.gene063813.t1.exon3;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63323193 | 63323281 | 63323193 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63323000 | 63323076 | 63323000 | ID=MS.gene063813.t1.exon4;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63323000 | 63323076 | 63323000 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63322130 | 63322240 | 63322130 | ID=MS.gene063813.t1.exon5;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63322130 | 63322240 | 63322130 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63321889 | 63322034 | 63321889 | ID=MS.gene063813.t1.exon6;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63321889 | 63322034 | 63321889 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| chr8.1 | exon | 63321477 | 63321573 | 63321477 | ID=MS.gene063813.t1.exon7;Parent=MS.gene063813.t1 |
| chr8.1 | CDS | 63321477 | 63321573 | 63321477 | ID=cds.MS.gene063813.t1;Parent=MS.gene063813.t1 |
| Gene Sequence |
| Protein sequence |
