AlfalfaGEDB | MS.gene016556

M. sativa cultivar XinJiangDaYe / MS.gene016556

KEGG: K14431
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07716.18 PF14144.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016556.t1	XP_003627926.1	98.7	466	6	0	1	466	1	466	6.50E-224	786.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016556.t1	Q6IVC2	64.1	454	153	6	18	466	24	472	1.3e-127	458.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016556.t1	G7LGW2	98.7	466	6	0	1	466	1	466	4.7e-224	786.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene016556.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016556	MS.gene014002	PPI
MS.gene016556	MS.gene017753	PPI
MS.gene016556	MS.gene61762	PPI
MS.gene016556	MS.gene063783	PPI
MS.gene016556	MS.gene38759	PPI
MS.gene016556	MS.gene88455	PPI
MS.gene017753	MS.gene016556	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016556.t1	MTR_8g040120	98.712	466	6	0	1	466	1	466	0.0	948
MS.gene016556.t1	MTR_7g089800	67.591	469	132	9	1	466	1	452	0.0	589
MS.gene016556.t1	MTR_7g089800	69.863	438	114	7	31	466	2	423	0.0	578
MS.gene016556.t1	MTR_5g054900	68.858	289	88	2	179	466	66	353	2.79e-142	412
MS.gene016556.t1	MTR_5g054900	68.858	289	88	2	179	466	147	434	1.80e-141	412
MS.gene016556.t1	MTR_5g054900	68.166	289	86	3	179	466	66	349	3.43e-138	401
MS.gene016556.t1	MTR_5g054900	68.166	289	86	3	179	466	177	460	5.35e-137	402
MS.gene016556.t1	MTR_7g092750	56.891	341	133	6	134	465	26	361	2.97e-130	381
MS.gene016556.t1	MTR_1g111310	59.155	355	115	6	135	466	360	707	4.27e-130	393
MS.gene016556.t1	MTR_1g111310	60.119	336	114	5	135	460	1	326	2.82e-119	365

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016556.t1	AT3G12250	80.120	332	64	2	135	466	1	330	0.0	526
MS.gene016556.t1	AT3G12250	80.120	332	64	2	135	466	1	330	0.0	526
MS.gene016556.t1	AT3G12250	80.120	332	64	2	135	466	1	330	0.0	526
MS.gene016556.t1	AT3G12250	80.120	332	64	2	135	466	1	330	0.0	526
MS.gene016556.t1	AT3G12250	74.790	357	63	3	135	466	1	355	0.0	514
MS.gene016556.t1	AT3G12250	82.237	304	53	1	163	466	1	303	1.20e-177	499
MS.gene016556.t1	AT3G12250	82.237	304	53	1	163	466	22	324	1.26e-177	500
MS.gene016556.t1	AT5G06950	75.510	343	60	3	135	466	1	330	1.60e-177	500
MS.gene016556.t1	AT5G06950	75.510	343	60	3	135	466	1	330	1.60e-177	500
MS.gene016556.t1	AT5G06950	75.510	343	60	3	135	466	1	330	1.60e-177	500

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Find 126 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAATCATGGATGGCA+AGG	0.591430	8.2:+60426080	None:intergenic
AAACCAGGAAGAATTTGCCA+TGG	0.653768	8.2:-60429629	MS.gene016556:CDS
AAAGGATAAATCAGATCAGA+AGG	0.550838	8.2:-60429053	MS.gene016556:intron
AAATCAATCCCTTGCTGTTG+CGG	0.481055	8.2:-60429098	MS.gene016556:CDS
AACGACTACTTTCCAATTGT+TGG	0.295766	8.2:+60428078	None:intergenic
AAGCTTCAATCATCAAATCC+AGG	0.562366	8.2:-60429682	MS.gene016556:CDS
AAGTGTTCATACAGAAAACC+AGG	0.608836	8.2:-60429644	MS.gene016556:CDS
AATATTGACAACACGACAAT+CGG	0.436484	8.2:-60426113	MS.gene016556:CDS
AATCAATCCCTTGCTGTTGC+GGG	0.351965	8.2:-60429097	MS.gene016556:CDS
AATTCGATGCAGAATATGCA+AGG	0.654839	8.2:-60427272	MS.gene016556:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATAAATCAGATCAGA+AGG	-	chr8.2:60428847-60428866	MS.gene016556:intron	30.0%
AACACAAGTGTATACTTCTT+TGG	-	chr8.2:60429700-60429719	MS.gene016556:CDS	30.0%
AAGTGCTTATGTATAAGCTA+CGG	+	chr8.2:60428650-60428669	None:intergenic	30.0%
AATAATTGTCATAGTCCAGT+TGG	+	chr8.2:60426664-60426683	None:intergenic	30.0%
AATATTGACAACACGACAAT+CGG	-	chr8.2:60431787-60431806	MS.gene016556:intron	30.0%
AATGAACCACCATTTATGAA+AGG	-	chr8.2:60430399-60430418	MS.gene016556:intron	30.0%
ACTTGGCAAAGATAATGTTA+AGG	-	chr8.2:60427588-60427607	MS.gene016556:intron	30.0%
ATGAACCACCATTTATGAAA+GGG	-	chr8.2:60430400-60430419	MS.gene016556:intron	30.0%
ATTGTATAGTATGTAACGTG+GGG	-	chr8.2:60426869-60426888	MS.gene016556:intron	30.0%
ATTGTCGTGTTGTCAATATT+CGG	+	chr8.2:60431787-60431806	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	60426030	60431892	60426030	ID=MS.gene016556
chr8.2	mRNA	60426030	60431892	60426030	ID=MS.gene016556.t1;Parent=MS.gene016556
chr8.2	exon	60431810	60431892	60431810	ID=MS.gene016556.t1.exon1;Parent=MS.gene016556.t1
chr8.2	CDS	60431810	60431892	60431810	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60430556	60430653	60430556	ID=MS.gene016556.t1.exon2;Parent=MS.gene016556.t1
chr8.2	CDS	60430556	60430653	60430556	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60429882	60429964	60429882	ID=MS.gene016556.t1.exon3;Parent=MS.gene016556.t1
chr8.2	CDS	60429882	60429964	60429882	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60429567	60429770	60429567	ID=MS.gene016556.t1.exon4;Parent=MS.gene016556.t1
chr8.2	CDS	60429567	60429770	60429567	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60429054	60429128	60429054	ID=MS.gene016556.t1.exon5;Parent=MS.gene016556.t1
chr8.2	CDS	60429054	60429128	60429054	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60428896	60428955	60428896	ID=MS.gene016556.t1.exon6;Parent=MS.gene016556.t1
chr8.2	CDS	60428896	60428955	60428896	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60428031	60428108	60428031	ID=MS.gene016556.t1.exon7;Parent=MS.gene016556.t1
chr8.2	CDS	60428031	60428108	60428031	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60427838	60427889	60427838	ID=MS.gene016556.t1.exon8;Parent=MS.gene016556.t1
chr8.2	CDS	60427838	60427889	60427838	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60427032	60427303	60427032	ID=MS.gene016556.t1.exon9;Parent=MS.gene016556.t1
chr8.2	CDS	60427032	60427303	60427032	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60426440	60426688	60426440	ID=MS.gene016556.t1.exon10;Parent=MS.gene016556.t1
chr8.2	CDS	60426440	60426688	60426440	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1
chr8.2	exon	60426030	60426176	60426030	ID=MS.gene016556.t1.exon11;Parent=MS.gene016556.t1
chr8.2	CDS	60426030	60426176	60426030	ID=cds.MS.gene016556.t1;Parent=MS.gene016556.t1

Gene Sequence

>MS.gene016556

ATGGGAAGTAGAATCAGAGTTGGTGTTGAAGATGAGAAGGGAGCAGAAAGAGGGATGCCGAGCTTCAATTCCGACGATGCATGGTATATTTCTTCTTAGTTTAGAATTTCAATTTTTAGATTGCAAGTTTTTTTGGCTCAATTGTTGTTGTAAATCTTAGTCCCTTGATGATACATTTAAAATGAATATATGTGATATTTTGATTTTCATTGTTGCTTTGAATGAAGAATGGATAGTGAAGGATTCTGAACTTTTGTTGTAGTTTACACGAATAAAACTTTATAAACTAGTAGTTGTGAAATGTAGATTTAGGGCACTTACATCTTTAGCACAGTTGCCCTAAATTTAGATTTAGGGCTTGTTTGGATTGACTTATTTACTGGCATAAGCACCTGTGAGACTGTTTGTAAGCTGCTTTCAGCTTATTTTGCATAAATCTCTAGGATAGCTTATCGAACCGACTTACATCTTATATGAAAACAATTTAACTTTCTTATATCTTTTGGTTAAATAACTTATACATAAGCACTTACATGATAAGCATTTATGTTAAAAGAGCTTCGTTAATACATCAAAAAAAAAAAAGAGCTTCGTTAAGCCCTCTATGCAAAACCGCTCTGCCTTATATGGACCAACTGGACTATGACAATTATTTTTTCATTTACAATTTTATTTTAAGTGCTTTACATCTTGATAGACTAAAGTACTGTTTACTATGTTATGAGTCACTGTGAATATCTTCCTTGGGTGGTTAGAGTGAGGCTTTACACTTCCATTTCCCATTCTAGGTTAAACCTTATCATGTGGAGATTGTATATGTAGCTTTGAGAAAGTTTGTCATTGTATAGTATGTAACGTGGGGTTAAAATAGTTAAAATGAGTGCCTTTAGAAAAGCTATTTAACATACAAGGAAATGTTTTATTTTGAGGAGTATATGGATCAAAATATATGACATAATTGGGCTCTAGTCTTGGAGAGCATCGGAAATGTGTAAAGCTTATGCAGCTAGTTGTATGACAGGAAAAGGTTTTGTTACTAATAGGAATTAAATTTGTTGATCGAAATTTGGCATGGTTCATGGTGTATCGTGTTCACTGGGTACTTGACATGTTTTCTTTGGGGATTGCAAATAATTTGATATGATTATAAAGTATATAGTACTGCCGTTTTTGTGCAATTTTTCTCTAAAATGAAATGTACGATTTGGTATCCTAATTCTGACAAAATATGGATTTCAGCTATACAGATGGGAACACAATTGATAATTTTCATGTTTCTGACTTTGGAGCATTTAGTCAACCATATCGCTTAGAGGATGCTGTTGTTCTGAGTGGAAGTAAGTCTTCTTGTAATCTGACTTGGCAAAGTTTACATGTAACAAAGCAAATACAGTCAGTATGTTGTATTATCTCGTGTCTTGGTGCACCAATAATCTCATAAAACTTGTTTTTTTTTTTTTACTTGTCTAAACGATGTTTAGTTACCATTTTTTAAATAAATTGGAACTATACAATGGTTTTTGTTTGCAATCTGTTAGTGCACAATTACTTGTTGATTACTTGGCAAAGATAATGTTAAGGAAACAGAAAATCGAACTCACAAACACACATTCACAAATGTACAAGTGTTGTCAATTGCAGATCGCAGAAAATAGTGGGTTGTTCAAATTTTGCTATGCAACAGTGCTATAGCGCCACTATAGTTTCCATTTGACAACACTTTGTACTTAATAGCGTATCGTGGAACAATAAAGATTTGTTCAAATTTCACTACGCTAAAGCACTATAGCGCTGATATGCCGCTATTCAACAACACTAGAATGTACACTTGCACCTAGATATCATTGTCTATCTTTTTATCAATTCTTGTTGACAAACATGTACTTTTTTCCATCCTTTCCTTTGCTAATGAATTTTTCTGATTATAGATTCAAACTCGGTTTTTAACTCACTTAAAGTAAGTGGCCAAACAATTTCTCCTGGCCCTGTTCACACCAGTTCTCTTGATAAGGTGAGTTTTTCTTGTTCTTCTGTTCTAACGAATTTCCTGCTTCGGTATAAATGTTGAAGTTTTAGCATTACGGAACATCTAATTGCGGAAATTTCTTTCCTTTCTCTTTAGTTGCCAACATCACGTGATAAAAGCCCATTGACGAACCAAGCAGAGCCACATAGGTTGCAATTAACAAAGCTTCAATCATCAAATCCAGGTAGCGGTACCATATTAAGTGTTCATACAGAAAACCAGGAAGAATTTGCCATGGCCGATGCCAGTCCTAGGACTGATATTTCGACAGATGGAGACACCGATGACAAGAATCAGCGGGTGAAGTTTCTTCAACCTTTATGCTTTTTCTCCCTTCTTGTTTAAATGATAACATCTCTAATCCCTATCCTGCATTTGCACATCTGGAAACCAGTTCAAGTTGAACTTGTCAATAAGAATCTAACTATATAATTTTTAAACTGTTTTCAGCTTATTTCCAAAAGCTCTGCAACATAGCTTTTGAAAACAGTTTGACTCTATTTTGTCTTTTATTATAGAAATAGCTTATGCGTAAGCACTTATATGATAAGAGCTTATGCTATAAGCTGTTACGTAAGTTTATAAACAGGGCCGTAGCTTATACATAAGCACTTATATGATAAGCGCTTATGATTCAAGCACTTAATTGAACTATTTATCCAAATAGAGCCTTAATAAGATGAGTAGCATTGCTTGCAGATACAGTTGAATAACATTTTATGCATTCTACATTTGCAGTTTGATAGAAATCAATCCCTTGCTGTTGCGGGTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGGTTAGTAATATTAACAAATTTATTGCATGGATAATATCTAAAATTCAAATTAGTATCTATTATATAATGACATTTTTTTTCCTTCAATATTATTGTAGACTCTCCGCAGGCTCGCTCAGAATCGTGAGGCGGCAAGAAAAAGCCGATTGAGAAAGAAAGTAAGGATTATCTTTACTTGAATTTTTTCTTTTATTATTTATTCTTGTATGCTTGTATATTTTCTTTTTTCCCCATATAAATGTTGTTATCATGTCTAATAATTTAAAGACAGAATTTGATTAGAAAAAAGTTTGTACAAAAAGCTATTCGGGTTTTCTTCCTTATAACTTTGTAACCGACATTGTCCAATAGGAAGTTACACTTTTTGGTCTTCCTTCAGTTAAATTGGCAAGCCAATAATTTTAACATGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTTAGGTTGTCACTAAGTGTCTCATTGCAAAAGAGTTGAAAATTGATTAATTACTTTCTTTTATCGTGTTTGTCCGTTGAAGAATCATATGACCTGTAATGTTTAATGCATGTTTGAATTATTTTCGAGGGACACATGTGATTCTTTATACGTAAAATTAATTTGACATGTTTGAATGTTCTAAAATCTAAAGTATAATTGCTTTTGCCTCCAGAATGAGTTTTGACTTGAAGCTGAGATTTGTAGCTTTTTCCTCCAACCATATTTATTATCTTTAAATTTATGATTCAACTTACTATTATTTGAATATATCCAATCATAGATCACTTTACATTCAACTTACTTTTAACCAAAACCAATTTATTTAAATCAATTTTCGCCATCATTTAATCAAACACAAGTGTATACTTCTTTGGCTCCTATGATAGTTGTAAAAAATTATTGTTTTTTCATTCCTCGATTGACCATTGAATTGTAAGACCTGACATAGTATATTCATTTTCATAGGCCTATGTCCAACAATTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCCAGGCAACAGGTTAGATTCAGTTAATCCTTGCAATTAGATTGCACCAGTTGTCTGCTCTCTCTTTCTCTCTTTCCTTTTGATTTTTGTGCGACACGTTTCCGTAGCAGTCGTACTCTATTTTAAACCTGAATTTCTTGTTTCTTCTTGTAGGGAGTCTTCATATCAAGCTCGGGTGAACAAACACATTCACTGAGTGGAAATGGTATGTTGTTTCTAAACTATGTTACTTATTCTTTGGTTAATTATGTCTAATAGTCTATCTGGTTGTAGAGAGAAAGTAAGAAGAGAGAAGTAGGTGTGAGTGAGTATAAGAAGAGAGAAAAAGATGAGCAGTGTAGTAGATTTGAGGTATTGTTTGGTATAGGAGTAAGAGAGAAGAAATAGTGACAAAAGAAAACTTTAAATTGTTTTCGTCAAAAATAAAATTGTAGTTTAGTTAAGAAATGTTAAAAAACTGTCAAACTTGATTAAAATATCTTCAATGCTTCGTAAAAAAATTAAATTCTCTACAATGCAAATGAACCACCATTTATGAAAGGGTACAACAGGAAAATGATTAAAATGTGGTGCATTTCTCTGCACTTTCTTCGCAGCTGAGAGAAGAAAGGAAAAAGTTATGCGCCCACCATCAGCGTAAAACACCATAGTATAATTTGTTTCTGTTATGTTGTTGTAACAAGTTATATCATTATATCAGTTATGAGTTATCCATAACAATCATTTAATTGTGTTTCAGGAGCAATGCAATTCGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTGTAGTGGCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCTGAAAGGTGTTTCTTATGGCTTGGTGGTTTTCGGTCATCTGAACTTCTCAAGGTGAGGTTATGCTGACCCTTTTCAATATGGATCACATTCCTTTTTATGCTGATACTCGGCTAATTTTCCTGTTCCTTGAAATCAATTGAACCCCGAATCTTTGACTTATTTTGAATATATATCAATACATTACTTTAAGAACAAGAACTTTCTTTGGCGTGGCATGGTGGGAGTTTAGTATTAAAAAAAGAATAGTAAAGGTTATTTTTTAAAAGCCCTAAGCCTGCTGTTAAATACATGTCTCATAATTATGACAACCGAGTTTTAATATTTTGAAGGCTAGAGTCATTTTTAGAGTTTCTTTTCTCTACTTCTTGACTTAGTGTGACAAATGTGGTTACAGCTTCTGGTAAATCAATTGGAACCTCTCACTGAGCAGCAGTTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTACAACAGTCCCTTGCAGAGACGTTGTCCACTGGTGCACCTTCCTCATCTGGTTCCTCGGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTTGGAACACTCGAGGGCTTCATTCGGCAGGTAAATTTTTCTTTCTCAAACTTGTGTTTAATTAATTTGGTACATTTGCATGGTTTTTGGTGAACACGTTGTTTATTTACTCTTGATCTATGTAGCACCGACACTTTAGGTTATGAATTTATGTCTGAGTGTACGACACTGTTAGAATAACTTGTGTTTTCACTGTCATAAAAAAACCTTGTGTTTTCACTATTTCATGTCATATTATTTACCCTATTATAAAATATCTTACTATGGACTCATTTCTGTGTATTTGTTACAAGGCTGACAATCTGCGCCAGCAAACACTACAACAAATGCACCGAATATTGACAACACGACAATCGGCTCGTGCACTCCTTGCCATCCATGATTACTTTTCACGGCTGCGCGCTCTCAGCTCTCTCTGGTTGGCTCGTCCAAGAGATTAA

Protein sequence

>MS.gene016556.t1

MGSRIRVGVEDEKGAERGMPSFNSDDACYTDGNTIDNFHVSDFGAFSQPYRLEDAVVLSGNSNSVFNSLKVSGQTISPGPVHTSSLDKLPTSRDKSPLTNQAEPHRLQLTKLQSSNPGSGTILSVHTENQEEFAMADASPRTDISTDGDTDDKNQRFDRNQSLAVAGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGVVAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD