Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016765.t1 | XP_003616940.1 | 92.4 | 1139 | 86 | 0 | 1 | 1139 | 1 | 1139 | 0.00E+00 | 2040.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016765.t1 | Q0WVF8 | 44.8 | 1156 | 595 | 11 | 1 | 1137 | 2 | 1133 | 8.4e-266 | 918.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016765.t1 | G7K7L4 | 92.4 | 1139 | 86 | 0 | 1 | 1139 | 1 | 1139 | 0.0e+00 | 2040.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35361 | MS.gene016765 | PPI |
| MS.gene016765 | MS.gene91488 | PPI |
| MS.gene073095 | MS.gene016765 | PPI |
| MS.gene94650 | MS.gene016765 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016765.t1 | MTR_5g085950 | 92.450 | 1139 | 86 | 0 | 1 | 1139 | 1 | 1139 | 0.0 | 2091 |
| MS.gene016765.t1 | MTR_2g100870 | 86.140 | 1140 | 157 | 1 | 1 | 1139 | 1 | 1140 | 0.0 | 1956 |
| MS.gene016765.t1 | MTR_5g055460 | 77.083 | 48 | 11 | 0 | 175 | 222 | 17 | 64 | 5.07e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016765.t1 | AT5G48120 | 44.762 | 1155 | 597 | 12 | 1 | 1137 | 2 | 1133 | 0.0 | 920 |
| MS.gene016765.t1 | AT5G48120 | 44.762 | 1155 | 597 | 12 | 1 | 1137 | 2 | 1133 | 0.0 | 920 |
| MS.gene016765.t1 | AT5G48120 | 44.762 | 1155 | 597 | 12 | 1 | 1137 | 2 | 1133 | 0.0 | 920 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGAAGCCCTCTTATATT+TGG | 0.180661 | 5.2:-73153860 | None:intergenic |
| AAAATACTGAAGAGCATAAA+TGG | 0.184927 | 5.2:+73154290 | MS.gene016765:CDS |
| GCAGCTCATGCCAGTTCTTC+TGG | 0.201051 | 5.2:+73154932 | MS.gene016765:intron |
| ATGTTCTCAAATGTTGATTT+TGG | 0.210187 | 5.2:-73152470 | None:intergenic |
| CTCCACCAAATAGGTATTTA+TGG | 0.212231 | 5.2:-73151314 | None:intergenic |
| ACTAAGAATGATGGATAGTT+TGG | 0.215757 | 5.2:+73151633 | MS.gene016765:CDS |
| TGAAACTGCTGTTCAGCTTT+TGG | 0.218439 | 5.2:+73153006 | MS.gene016765:CDS |
| CAAAATATGTTGGGGCTATT+TGG | 0.229017 | 5.2:+73151275 | MS.gene016765:CDS |
| TCAATTACAACTTCATTCTT+TGG | 0.231489 | 5.2:-73151382 | None:intergenic |
| CATAAGACGTTAAATTTCTA+TGG | 0.235132 | 5.2:-73152985 | None:intergenic |
| ACTTCTAATTTGAGTGAAAA+AGG | 0.246410 | 5.2:-73152683 | None:intergenic |
| TCCCCATTGTGCAGCTTGTT+CGG | 0.273499 | 5.2:+73155911 | MS.gene016765:intron |
| TGTTCCAGTTGCACAGGCTT+TGG | 0.294783 | 5.2:+73153913 | MS.gene016765:CDS |
| CCCCATTGTGCAGCTTGTTC+GGG | 0.296076 | 5.2:+73155912 | MS.gene016765:intron |
| GTTCCAGTTGCACAGGCTTT+GGG | 0.297454 | 5.2:+73153914 | MS.gene016765:CDS |
| AGACACCATAAATACCTATT+TGG | 0.302273 | 5.2:+73151309 | MS.gene016765:CDS |
| AACTTGCAGGTTCAATCTTT+AGG | 0.308558 | 5.2:+73148479 | MS.gene016765:CDS |
| TTGAAATCATTATTTCATAT+TGG | 0.321286 | 5.2:+73152557 | MS.gene016765:CDS |
| GGAGGATTGCCATTGACTTT+TGG | 0.329070 | 5.2:+73153752 | MS.gene016765:CDS |
| AAAACAAGCATTAAACATTC+TGG | 0.332262 | 5.2:-73149491 | None:intergenic |
| TTCTCTGCAGGTTTCAAGCT+TGG | 0.333213 | 5.2:+73147078 | MS.gene016765:intron |
| TATATTTGGAATGTGTGCTT+TGG | 0.333385 | 5.2:-73153846 | None:intergenic |
| ATATTTGGAATGTGTGCTTT+GGG | 0.334024 | 5.2:-73153845 | None:intergenic |
| ATAGCTTGGTTGGGTTCTTC+AGG | 0.334626 | 5.2:+73148096 | MS.gene016765:CDS |
| TTAGAAGTATTATCTGATAT+TGG | 0.336307 | 5.2:+73152698 | MS.gene016765:CDS |
| AGAGCATAAATGGGATCTTT+TGG | 0.340308 | 5.2:+73154300 | MS.gene016765:CDS |
| GTTTCAAGCTTGGATGCAAT+TGG | 0.346172 | 5.2:+73147088 | MS.gene016765:CDS |
| TGCACAGGCTTTGGGATCTA+TGG | 0.346478 | 5.2:+73153922 | MS.gene016765:CDS |
| TTCTTCAGGAATTCTTCTTC+TGG | 0.346745 | 5.2:+73148022 | MS.gene016765:intron |
| GATCCCAAAGCCTGTGCAAC+TGG | 0.349295 | 5.2:-73153917 | None:intergenic |
| GGGCTGGAAAGAGCTATATT+TGG | 0.357872 | 5.2:+73152758 | MS.gene016765:CDS |
| TGGGTTGCTTGGAACTTATA+AGG | 0.358042 | 5.2:+73148390 | MS.gene016765:CDS |
| GAAATCTGGCTCCACCAAAT+AGG | 0.361190 | 5.2:-73151323 | None:intergenic |
| AGAGTGTGCTCTTCCAAGTA+TGG | 0.362079 | 5.2:+73151238 | MS.gene016765:CDS |
| CATACAAGATATCTTTATCT+TGG | 0.362497 | 5.2:-73154983 | None:intergenic |
| CTGGGCAGGATCCTTGAAAA+TGG | 0.368274 | 5.2:+73153244 | MS.gene016765:intron |
| ACTTTGAAACACGGCATTGC+AGG | 0.370408 | 5.2:-73151605 | None:intergenic |
| AGTTCCTTGCCTTTGATTGA+AGG | 0.371015 | 5.2:+73154259 | MS.gene016765:CDS |
| ACTTCAACAAAACAATACTA+TGG | 0.376528 | 5.2:+73152525 | MS.gene016765:CDS |
| TGCCGATTCAGTTGCCTCAT+TGG | 0.376819 | 5.2:+73148825 | MS.gene016765:CDS |
| TCACCTCCAATGTATATATC+AGG | 0.379956 | 5.2:-73151892 | None:intergenic |
| AGTGAAGGGCTTGCAGATTC+TGG | 0.384723 | 5.2:+73152418 | MS.gene016765:intron |
| CCAATGTATATATCAGGATC+AGG | 0.387226 | 5.2:-73151886 | None:intergenic |
| ATCTGAGGAACTATGAAGTA+TGG | 0.392406 | 5.2:-73151809 | None:intergenic |
| GTAGTTCTATACAGAGATAA+AGG | 0.399321 | 5.2:-73151729 | None:intergenic |
| ATGCAGTTTGTGGGCTCTCA+TGG | 0.409981 | 5.2:+73154149 | MS.gene016765:CDS |
| AAAATATTGAGCAATGGCTT+TGG | 0.410682 | 5.2:-73148450 | None:intergenic |
| CTAAGAATGATGGATAGTTT+GGG | 0.411335 | 5.2:+73151634 | MS.gene016765:CDS |
| ATCTTTCAGCTTAATGATGT+TGG | 0.411614 | 5.2:+73153731 | MS.gene016765:CDS |
| TATTTATAATCAGGCAGATT+GGG | 0.419519 | 5.2:+73148346 | MS.gene016765:intron |
| CTCTTCCACTTCAACTCTCC+AGG | 0.421372 | 5.2:+73146373 | MS.gene016765:CDS |
| TAATTCTCCATTTGAAGAAA+AGG | 0.421895 | 5.2:+73153336 | MS.gene016765:CDS |
| GCACACATTCCAAATATAAG+AGG | 0.430295 | 5.2:+73153851 | MS.gene016765:CDS |
| AGAGAATCGCAAAATATGTT+GGG | 0.432517 | 5.2:+73151266 | MS.gene016765:CDS |
| CACACCTCTTGACCGAATTA+CGG | 0.435522 | 5.2:-73147308 | None:intergenic |
| CTTCAACAAATACCGTAATT+CGG | 0.440067 | 5.2:+73147296 | MS.gene016765:CDS |
| GACAAGCAATCCAGAAGAAC+TGG | 0.440725 | 5.2:-73154942 | None:intergenic |
| CTTCAAACCAATGCAGTTTG+TGG | 0.440773 | 5.2:+73154139 | MS.gene016765:CDS |
| TATACTGAATGAAGCTAAAG+AGG | 0.446254 | 5.2:+73154813 | MS.gene016765:CDS |
| TAGCTTGGTTGGGTTCTTCA+GGG | 0.446497 | 5.2:+73148097 | MS.gene016765:CDS |
| AGGAATTCTTCTTCTGGCAG+AGG | 0.451191 | 5.2:+73148028 | MS.gene016765:intron |
| AAAACTATACATAGCTTGGT+TGG | 0.451872 | 5.2:+73148086 | MS.gene016765:CDS |
| AGTGATGTGGGTATGGTAAC+GGG | 0.457512 | 5.2:+73148419 | MS.gene016765:CDS |
| GGGTGTTGTTCCAGTTGCAC+AGG | 0.458087 | 5.2:+73153907 | MS.gene016765:CDS |
| GTTAACTGAATGGGAAAGTA+AGG | 0.461803 | 5.2:-73149602 | None:intergenic |
| GCCAGACTTCTCTGCACCAT+TGG | 0.462090 | 5.2:-73153966 | None:intergenic |
| CAAGATAAAGATATCTTGTA+TGG | 0.465086 | 5.2:+73154984 | MS.gene016765:CDS |
| AATCCATGCAATTTCCTGCC+TGG | 0.465330 | 5.2:-73153312 | None:intergenic |
| GCTAGAGTAAAAGAGAAATC+TGG | 0.469250 | 5.2:-73151337 | None:intergenic |
| AAGAAGAAAGTTTCTGAAGA+AGG | 0.469520 | 5.2:-73151055 | None:intergenic |
| GACATCTCCCGTAGGGATGA+AGG | 0.469709 | 5.2:+73153782 | MS.gene016765:CDS |
| CGATTATATCCTGATCCATC+TGG | 0.470202 | 5.2:+73149536 | MS.gene016765:CDS |
| TCCAATGGTGCAGAGAAGTC+TGG | 0.472525 | 5.2:+73153965 | MS.gene016765:CDS |
| TTTCAAGCTTGGATGCAATT+GGG | 0.472760 | 5.2:+73147089 | MS.gene016765:CDS |
| GGGCTCTCATGGATTGGAAA+AGG | 0.473984 | 5.2:+73154160 | MS.gene016765:CDS |
| TAGAACTACTAGCAGGATGC+AGG | 0.474197 | 5.2:+73151743 | MS.gene016765:CDS |
| TTATCTGATATTGGCATGAC+TGG | 0.475419 | 5.2:+73152707 | MS.gene016765:CDS |
| TGAGATCAACTGCAGAAAGA+TGG | 0.476147 | 5.2:-73154446 | None:intergenic |
| CTGGAGAGTTGAAGTGGAAG+AGG | 0.476984 | 5.2:-73146372 | None:intergenic |
| TTCAAACCAATGCAGTTTGT+GGG | 0.477711 | 5.2:+73154140 | MS.gene016765:CDS |
| ATATTTATAATCAGGCAGAT+TGG | 0.478388 | 5.2:+73148345 | MS.gene016765:intron |
| GAAAATTTCATGCCACGATA+CGG | 0.478982 | 5.2:+73154386 | MS.gene016765:CDS |
| TGCAAAGAGATGACCTATCT+AGG | 0.480403 | 5.2:+73149917 | MS.gene016765:CDS |
| TATGTGATGGATCAAGTAAT+GGG | 0.481857 | 5.2:+73154065 | MS.gene016765:CDS |
| GATTCTCTCTGATCCATACT+TGG | 0.482212 | 5.2:-73151251 | None:intergenic |
| AAACTATACATAGCTTGGTT+GGG | 0.482444 | 5.2:+73148087 | MS.gene016765:CDS |
| CTGTCAAATGTCGGCAAGCA+TGG | 0.485151 | 5.2:+73156256 | MS.gene016765:CDS |
| TCATGTGAACCTTCAATCAA+AGG | 0.485416 | 5.2:-73154268 | None:intergenic |
| GAGGAAAAGTGATGTGGGTA+TGG | 0.486473 | 5.2:+73148412 | MS.gene016765:CDS |
| TTTCAGCTTAATGATGTTGG+AGG | 0.487070 | 5.2:+73153734 | MS.gene016765:CDS |
| ACATCAAAATCGAAGACTCC+TGG | 0.487975 | 5.2:-73156400 | None:intergenic |
| CTGCAGAAAGATGGGCATCA+TGG | 0.490694 | 5.2:-73154437 | None:intergenic |
| TGTTAGTAACATTGATGGCT+CGG | 0.491260 | 5.2:+73151663 | MS.gene016765:CDS |
| CAAAATTTAGGTTAGAGAGT+TGG | 0.491451 | 5.2:+73147261 | MS.gene016765:intron |
| TACCAATGAGGCAACTGAAT+CGG | 0.492157 | 5.2:-73148827 | None:intergenic |
| GCAGTACGAGGTGCACTTGT+GGG | 0.492437 | 5.2:+73148371 | MS.gene016765:CDS |
| CACGGCATTGCAGGAAGGAA+TGG | 0.494774 | 5.2:-73151596 | None:intergenic |
| AATCTTTAGGAATGTATGAC+AGG | 0.496654 | 5.2:+73148492 | MS.gene016765:CDS |
| GAGAGAATCGCAAAATATGT+TGG | 0.497138 | 5.2:+73151265 | MS.gene016765:CDS |
| GTTTGTGGGCTCTCATGGAT+TGG | 0.499724 | 5.2:+73154154 | MS.gene016765:CDS |
| TGGGTTCTTCAGGGAAAGAC+TGG | 0.501067 | 5.2:+73148106 | MS.gene016765:CDS |
| GCAAATAGACCAGATGGATC+AGG | 0.505582 | 5.2:-73149545 | None:intergenic |
| TGCAGCTATAGATGCAGAAA+GGG | 0.509949 | 5.2:+73149466 | MS.gene016765:CDS |
| GGAATGTTGACAGAGAATAA+TGG | 0.511086 | 5.2:+73155026 | MS.gene016765:CDS |
| GAAGTCTGGCGAACTTACCT+TGG | 0.512831 | 5.2:+73153979 | MS.gene016765:CDS |
| AACATCATTAAGCTGAAAGA+TGG | 0.513197 | 5.2:-73153729 | None:intergenic |
| GCAGGAAGGAATGGAAGTCT+TGG | 0.514261 | 5.2:-73151587 | None:intergenic |
| CTTACATGTGTTAACTGAAT+GGG | 0.515810 | 5.2:-73149611 | None:intergenic |
| AAATACTGAAGAGCATAAAT+GGG | 0.516826 | 5.2:+73154291 | MS.gene016765:CDS |
| GAGATCAACTGCAGAAAGAT+GGG | 0.518004 | 5.2:-73154445 | None:intergenic |
| GTTGATATTTGGAACCAGGC+AGG | 0.518291 | 5.2:+73153298 | MS.gene016765:CDS |
| AGGTGCACTTGTGGGTTGCT+TGG | 0.522192 | 5.2:+73148379 | MS.gene016765:CDS |
| AGTGGAAGAGGAGTGAATGT+AGG | 0.522673 | 5.2:-73146360 | None:intergenic |
| GAAAGTTTCTGAAGAAGGAG+AGG | 0.523072 | 5.2:-73151050 | None:intergenic |
| CCTGATCCTGATATATACAT+TGG | 0.526026 | 5.2:+73151886 | MS.gene016765:CDS |
| CACAATAAGCTGCTGAAGGA+GGG | 0.526498 | 5.2:-73151413 | None:intergenic |
| TTCTGTTGATATTTGGAACC+AGG | 0.527505 | 5.2:+73153294 | MS.gene016765:CDS |
| AGAAGGAGAGGAATAACAAA+TGG | 0.529006 | 5.2:-73151038 | None:intergenic |
| GCTTACATGTGTTAACTGAA+TGG | 0.529424 | 5.2:-73149612 | None:intergenic |
| TATATTTGGCAATCTTTCTG+AGG | 0.533100 | 5.2:+73152772 | MS.gene016765:CDS |
| CACCATAAATACCTATTTGG+TGG | 0.533738 | 5.2:+73151312 | MS.gene016765:CDS |
| TTCTTTAGCAGCCAACCAGT+GGG | 0.538116 | 5.2:+73149884 | MS.gene016765:intron |
| AAGTGATGTGGGTATGGTAA+CGG | 0.538936 | 5.2:+73148418 | MS.gene016765:CDS |
| GGGCATCAATTGCATCATCC+AGG | 0.542423 | 5.2:+73156382 | MS.gene016765:intron |
| AAAGTATCCCTTCATCCCTA+CGG | 0.543642 | 5.2:-73153790 | None:intergenic |
| AAGTATCCCTTCATCCCTAC+GGG | 0.545085 | 5.2:-73153789 | None:intergenic |
| TGAGAGCCCACAAACTGCAT+TGG | 0.545141 | 5.2:-73154146 | None:intergenic |
| CTTATATAGGGGCCGTATCG+TGG | 0.545442 | 5.2:-73154398 | None:intergenic |
| TGGAAAGTCAATACCATCTG+TGG | 0.545953 | 5.2:-73151362 | None:intergenic |
| CAATTGTCTAATTAAGCTTG+TGG | 0.545962 | 5.2:+73155508 | MS.gene016765:CDS |
| GATCCTGATATATACATTGG+AGG | 0.546263 | 5.2:+73151889 | MS.gene016765:CDS |
| ATTGATGGCTCGGAAAATGC+TGG | 0.546735 | 5.2:+73151673 | MS.gene016765:CDS |
| CAGTAAAACTATACATAGCT+TGG | 0.548555 | 5.2:+73148082 | MS.gene016765:CDS |
| GAACCAGGCAGGAAATTGCA+TGG | 0.548786 | 5.2:+73153309 | MS.gene016765:CDS |
| GTACCATCAGAGTCCTAGAT+AGG | 0.551961 | 5.2:-73149930 | None:intergenic |
| GTGCAGCTATAGATGCAGAA+AGG | 0.556365 | 5.2:+73149465 | MS.gene016765:CDS |
| ACATCTCCCGTAGGGATGAA+GGG | 0.557429 | 5.2:+73153783 | MS.gene016765:CDS |
| CTCTGTATAGAACTACTAGC+AGG | 0.557547 | 5.2:+73151736 | MS.gene016765:CDS |
| ATTCTTACTGACGTATGTCT+CGG | 0.558169 | 5.2:+73154097 | MS.gene016765:CDS |
| AATCGGCATGATGTTCTAGC+AGG | 0.558531 | 5.2:-73148810 | None:intergenic |
| TAGAACCTGGAGAGTTGAAG+TGG | 0.560342 | 5.2:-73146378 | None:intergenic |
| GCCTCACAAAGTGTCAACCT+TGG | 0.561065 | 5.2:+73151703 | MS.gene016765:CDS |
| AAGCTTGCAAATAGACCAGA+TGG | 0.562090 | 5.2:-73149551 | None:intergenic |
| CAATGTATATATCAGGATCA+GGG | 0.563399 | 5.2:-73151885 | None:intergenic |
| AGTATGGTGAAATATGTCTC+AGG | 0.563485 | 5.2:-73151793 | None:intergenic |
| TGATATTGGCATGACTGGCA+TGG | 0.564848 | 5.2:+73152712 | MS.gene016765:CDS |
| AGCAGTACGAGGTGCACTTG+TGG | 0.566441 | 5.2:+73148370 | MS.gene016765:CDS |
| GATCTGATACTTCATCGTCC+AGG | 0.568050 | 5.2:+73154470 | MS.gene016765:CDS |
| TTCTTCGCTACATTCAGCAA+AGG | 0.569039 | 5.2:+73151073 | MS.gene016765:CDS |
| GCACAATAAGCTGCTGAAGG+AGG | 0.569180 | 5.2:-73151414 | None:intergenic |
| TGCTTCTAGAGTTAAAGCAT+TGG | 0.570514 | 5.2:-73147125 | None:intergenic |
| TTTCTTTAGCAGCCAACCAG+TGG | 0.574028 | 5.2:+73149883 | MS.gene016765:intron |
| ATATGTGATGGATCAAGTAA+TGG | 0.574191 | 5.2:+73154064 | MS.gene016765:CDS |
| ATAAGGAGGAAAAGTGATGT+GGG | 0.575456 | 5.2:+73148407 | MS.gene016765:CDS |
| TTTAGGAATGTATGACAGGA+AGG | 0.576270 | 5.2:+73148496 | MS.gene016765:CDS |
| TATAAGGAGGAAAAGTGATG+TGG | 0.578294 | 5.2:+73148406 | MS.gene016765:CDS |
| TACAGCTAAGACTGAACAGA+AGG | 0.579362 | 5.2:-73151845 | None:intergenic |
| TGAATATATTAGGTTCTACA+AGG | 0.580818 | 5.2:+73156186 | MS.gene016765:intron |
| CACACATTCCAAATATAAGA+GGG | 0.586401 | 5.2:+73153852 | MS.gene016765:CDS |
| TTTGCACAATAAGCTGCTGA+AGG | 0.596021 | 5.2:-73151417 | None:intergenic |
| TAGTAAAATACTTTGAAACA+CGG | 0.598571 | 5.2:-73151614 | None:intergenic |
| AAACTCATTTCAAAATCCAA+TGG | 0.600291 | 5.2:+73153950 | MS.gene016765:CDS |
| TTTATAATAACCCTCCTCAA+GGG | 0.602040 | 5.2:+73153887 | MS.gene016765:CDS |
| TCATTCAGTATAACAATCAG+TGG | 0.604482 | 5.2:-73154802 | None:intergenic |
| TTGCACACGAGCATCCCCAC+TGG | 0.604713 | 5.2:-73149899 | None:intergenic |
| TTTACTCTAGCACCCACAGA+TGG | 0.604886 | 5.2:+73151349 | MS.gene016765:CDS |
| AATATGAAGAGCGTCTTCCA+AGG | 0.605402 | 5.2:-73153996 | None:intergenic |
| ACACGAGCATCCCCACTGGT+TGG | 0.606403 | 5.2:-73149895 | None:intergenic |
| AAAATATGACATCTCCCGTA+GGG | 0.609695 | 5.2:+73153775 | MS.gene016765:CDS |
| CTGGAACAACACCCTTGAGG+AGG | 0.612104 | 5.2:-73153898 | None:intergenic |
| GCAATGAAGCTGTCAAATGT+CGG | 0.615823 | 5.2:+73156247 | MS.gene016765:CDS |
| ATGTATATATCAGGATCAGG+GGG | 0.620026 | 5.2:-73151883 | None:intergenic |
| CCTTGAAAATGGAGGTGCAG+AGG | 0.624514 | 5.2:+73153255 | MS.gene016765:CDS |
| CCCATGTGCGTATCTATCCG+TGG | 0.624775 | 5.2:+73155974 | MS.gene016765:CDS |
| TGAACCTTCAATCAAAGGCA+AGG | 0.625366 | 5.2:-73154263 | None:intergenic |
| CCACGGATAGATACGCACAT+GGG | 0.626447 | 5.2:-73155974 | None:intergenic |
| GAAAATATGACATCTCCCGT+AGG | 0.626631 | 5.2:+73153774 | MS.gene016765:CDS |
| GGAATTAAATAAGAAATCTG+AGG | 0.626781 | 5.2:-73151824 | None:intergenic |
| GGAAAAGGTTTACTGTTGCG+TGG | 0.627473 | 5.2:+73154175 | MS.gene016765:CDS |
| TGACAAACCTGTGTTCTCCA+CGG | 0.628015 | 5.2:-73155991 | None:intergenic |
| TACAGAGATAAAGGAAACCA+AGG | 0.628293 | 5.2:-73151720 | None:intergenic |
| AGAACTACTAGCAGGATGCA+GGG | 0.628293 | 5.2:+73151744 | MS.gene016765:CDS |
| AATATGTTGCAGATATGTGA+TGG | 0.628938 | 5.2:+73154052 | MS.gene016765:CDS |
| TATCTATCCGTGGAGAACAC+AGG | 0.630733 | 5.2:+73155984 | MS.gene016765:CDS |
| ATCAAGAGAGAGAAGTTCCA+CGG | 0.632018 | 5.2:-73152648 | None:intergenic |
| ACCAAGGTTGACACTTTGTG+AGG | 0.632916 | 5.2:-73151704 | None:intergenic |
| GGAAAGTCAATACCATCTGT+GGG | 0.633762 | 5.2:-73151361 | None:intergenic |
| TGACCTATCTAGGACTCTGA+TGG | 0.637662 | 5.2:+73149927 | MS.gene016765:CDS |
| TGGAACAACACCCTTGAGGA+GGG | 0.639744 | 5.2:-73153897 | None:intergenic |
| TATTTGGAATGTGTGCTTTG+GGG | 0.640004 | 5.2:-73153844 | None:intergenic |
| AATGTATATATCAGGATCAG+GGG | 0.641803 | 5.2:-73151884 | None:intergenic |
| AATACCGTAATTCGGTCAAG+AGG | 0.649510 | 5.2:+73147304 | MS.gene016765:CDS |
| GAGAATCGCAAAATATGTTG+GGG | 0.649741 | 5.2:+73151267 | MS.gene016765:CDS |
| GACAGACATGACATGTGCAA+AGG | 0.650988 | 5.2:-73154776 | None:intergenic |
| GGCAGGATCCTTGAAAATGG+AGG | 0.653631 | 5.2:+73153247 | MS.gene016765:intron |
| CACGGATAGATACGCACATG+GGG | 0.656585 | 5.2:-73155973 | None:intergenic |
| TGAAACACGGCATTGCAGGA+AGG | 0.657191 | 5.2:-73151601 | None:intergenic |
| TACGGCCCCTATATAAGCAG+AGG | 0.660671 | 5.2:+73154404 | MS.gene016765:CDS |
| AAGAACATGAAAAGCTTCCG+CGG | 0.666547 | 5.2:-73154335 | None:intergenic |
| TGTGGACTACTCTCATAAGA+CGG | 0.667969 | 5.2:+73155526 | MS.gene016765:CDS |
| CGAAGCAAGGACTACCAATG+AGG | 0.668037 | 5.2:-73148839 | None:intergenic |
| TCCACGGATAGATACGCACA+TGG | 0.668857 | 5.2:-73155975 | None:intergenic |
| TTTGGCAAGAAAATGTGCCG+CGG | 0.676050 | 5.2:+73154318 | MS.gene016765:CDS |
| CAACTGGAACAACACCCTTG+AGG | 0.676901 | 5.2:-73153901 | None:intergenic |
| TAGCTTGATGATTGATGACG+AGG | 0.676918 | 5.2:+73151456 | MS.gene016765:CDS |
| ATTCATGCAAGCTACTTCCG+TGG | 0.680489 | 5.2:+73153035 | MS.gene016765:CDS |
| GTTGCTTGGAACTTATAAGG+AGG | 0.693521 | 5.2:+73148393 | MS.gene016765:CDS |
| GATGTGACGAGTCAATTGAG+TGG | 0.694716 | 5.2:-73146333 | None:intergenic |
| TCTTTAGCAGCCAACCAGTG+GGG | 0.698072 | 5.2:+73149885 | MS.gene016765:intron |
| GCAGATTGGGAAGCAGTACG+AGG | 0.715218 | 5.2:+73148359 | MS.gene016765:CDS |
| TGTATATATCAGGATCAGGG+GGG | 0.766067 | 5.2:-73151882 | None:intergenic |
| ATTCATGTCAATCATCACAG+AGG | 0.767349 | 5.2:+73152502 | MS.gene016765:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 73146323 | 73156419 | 73146323 | ID=MS.gene016765 |
| chr5.2 | mRNA | 73146323 | 73156419 | 73146323 | ID=MS.gene016765.t1;Parent=MS.gene016765 |
| chr5.2 | exon | 73146323 | 73146394 | 73146323 | ID=MS.gene016765.t1.exon1;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73146323 | 73146394 | 73146323 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73147088 | 73147150 | 73147088 | ID=MS.gene016765.t1.exon2;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73147088 | 73147150 | 73147088 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73147271 | 73147325 | 73147271 | ID=MS.gene016765.t1.exon3;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73147271 | 73147325 | 73147271 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73148030 | 73148127 | 73148030 | ID=MS.gene016765.t1.exon4;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73148030 | 73148127 | 73148030 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73148359 | 73148517 | 73148359 | ID=MS.gene016765.t1.exon5;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73148359 | 73148517 | 73148359 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73148787 | 73148846 | 73148787 | ID=MS.gene016765.t1.exon6;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73148787 | 73148846 | 73148787 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73149440 | 73149628 | 73149440 | ID=MS.gene016765.t1.exon7;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73149440 | 73149628 | 73149440 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73149895 | 73149948 | 73149895 | ID=MS.gene016765.t1.exon8;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73149895 | 73149948 | 73149895 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73151008 | 73151094 | 73151008 | ID=MS.gene016765.t1.exon9;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73151008 | 73151094 | 73151008 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73151217 | 73151910 | 73151217 | ID=MS.gene016765.t1.exon10;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73151217 | 73151910 | 73151217 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73152420 | 73152793 | 73152420 | ID=MS.gene016765.t1.exon11;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73152420 | 73152793 | 73152420 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73152983 | 73153056 | 73152983 | ID=MS.gene016765.t1.exon12;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73152983 | 73153056 | 73152983 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73153252 | 73153357 | 73153252 | ID=MS.gene016765.t1.exon13;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73153252 | 73153357 | 73153252 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73153620 | 73154491 | 73153620 | ID=MS.gene016765.t1.exon14;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73153620 | 73154491 | 73153620 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73154759 | 73154834 | 73154759 | ID=MS.gene016765.t1.exon15;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73154759 | 73154834 | 73154759 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73154936 | 73155047 | 73154936 | ID=MS.gene016765.t1.exon16;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73154936 | 73155047 | 73154936 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73155471 | 73155547 | 73155471 | ID=MS.gene016765.t1.exon17;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73155471 | 73155547 | 73155471 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73155925 | 73156005 | 73155925 | ID=MS.gene016765.t1.exon18;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73155925 | 73156005 | 73155925 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73156198 | 73156277 | 73156198 | ID=MS.gene016765.t1.exon19;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73156198 | 73156277 | 73156198 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| chr5.2 | exon | 73156383 | 73156419 | 73156383 | ID=MS.gene016765.t1.exon20;Parent=MS.gene016765.t1 |
| chr5.2 | CDS | 73156383 | 73156419 | 73156383 | ID=cds.MS.gene016765.t1;Parent=MS.gene016765.t1 |
| Gene Sequence |
| Protein sequence |
