Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94650.t1 | KEH38938.1 | 99.7 | 759 | 2 | 0 | 1 | 759 | 87 | 845 | 0.00E+00 | 1523.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94650.t1 | Q8W4M7 | 85.1 | 759 | 112 | 1 | 1 | 759 | 1 | 758 | 0.0e+00 | 1328.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94650.t1 | A0A072VC04 | 99.7 | 759 | 2 | 0 | 1 | 759 | 87 | 845 | 0.0e+00 | 1523.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene94650 | MS.gene81596 | PPI |
MS.gene94650 | MS.gene79893 | PPI |
MS.gene94650 | MS.gene95405 | PPI |
MS.gene94650 | MS.gene81861 | PPI |
MS.gene94650 | MS.gene76545 | PPI |
MS.gene94650 | MS.gene038750 | PPI |
MS.gene94650 | MS.gene77531 | PPI |
MS.gene94650 | MS.gene75670 | PPI |
MS.gene94650 | MS.gene05320 | PPI |
MS.gene94650 | MS.gene59983 | PPI |
MS.gene94650 | MS.gene060573 | PPI |
MS.gene94650 | MS.gene045358 | PPI |
MS.gene042336 | MS.gene94650 | PPI |
MS.gene94650 | MS.gene95407 | PPI |
MS.gene94650 | MS.gene016765 | PPI |
MS.gene94650 | MS.gene85160 | PPI |
MS.gene94650 | MS.gene37904 | PPI |
MS.gene94650 | MS.gene069880 | PPI |
MS.gene94650 | MS.gene36364 | PPI |
MS.gene94650 | MS.gene044567 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94650.t1 | MTR_2g084735 | 99.736 | 759 | 2 | 0 | 1 | 759 | 87 | 845 | 0.0 | 1581 |
MS.gene94650.t1 | MTR_2g084735 | 99.736 | 759 | 2 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1577 |
MS.gene94650.t1 | MTR_1g026490 | 23.402 | 829 | 451 | 28 | 3 | 728 | 17 | 764 | 3.71e-41 | 163 |
MS.gene94650.t1 | MTR_2g102150 | 28.223 | 287 | 190 | 5 | 432 | 702 | 416 | 702 | 9.99e-31 | 130 |
MS.gene94650.t1 | MTR_2g102150 | 27.338 | 278 | 146 | 10 | 3 | 248 | 4 | 257 | 2.42e-18 | 90.5 |
MS.gene94650.t1 | MTR_0147s0060 | 26.582 | 316 | 176 | 8 | 447 | 707 | 573 | 887 | 1.48e-21 | 100 |
MS.gene94650.t1 | MTR_0147s0060 | 27.488 | 211 | 131 | 6 | 68 | 265 | 197 | 398 | 1.15e-13 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94650.t1 | AT1G03190 | 85.112 | 759 | 112 | 1 | 1 | 759 | 1 | 758 | 0.0 | 1373 |
MS.gene94650.t1 | AT1G03190 | 85.112 | 759 | 112 | 1 | 1 | 759 | 1 | 758 | 0.0 | 1373 |
MS.gene94650.t1 | AT1G20720 | 24.497 | 845 | 462 | 29 | 3 | 744 | 27 | 798 | 3.36e-43 | 169 |
MS.gene94650.t1 | AT1G20720 | 24.382 | 849 | 458 | 29 | 3 | 744 | 27 | 798 | 3.53e-43 | 169 |
MS.gene94650.t1 | AT1G79890 | 28.383 | 303 | 164 | 7 | 447 | 701 | 304 | 601 | 2.14e-29 | 124 |
MS.gene94650.t1 | AT1G79890 | 28.383 | 303 | 164 | 7 | 447 | 701 | 400 | 697 | 5.13e-29 | 124 |
MS.gene94650.t1 | AT1G79890 | 28.383 | 303 | 164 | 7 | 447 | 701 | 553 | 850 | 5.53e-29 | 124 |
MS.gene94650.t1 | AT1G79890 | 27.660 | 188 | 114 | 6 | 65 | 239 | 180 | 358 | 2.33e-11 | 68.2 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 5.89e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 6.64e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 5.89e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 6.64e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 7.27e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 7.73e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 7.96e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 5.97e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 7.96e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 5.97e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 7.96e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 5.97e-17 | 85.9 |
MS.gene94650.t1 | AT1G79950 | 26.766 | 269 | 178 | 3 | 453 | 702 | 484 | 752 | 8.37e-26 | 114 |
MS.gene94650.t1 | AT1G79950 | 25.725 | 276 | 154 | 10 | 3 | 248 | 49 | 303 | 7.73e-17 | 85.9 |
MS.gene94650.t1 | AT1G79890 | 32.020 | 203 | 124 | 4 | 447 | 640 | 553 | 750 | 1.32e-24 | 110 |
MS.gene94650.t1 | AT1G79890 | 27.660 | 188 | 114 | 6 | 65 | 239 | 180 | 358 | 1.84e-11 | 68.2 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCATTTCCTTGGATATTA+TGG | 0.200561 | 2.4:+14531579 | None:intergenic |
ATCACTTCTCATATCAAATT+TGG | 0.202870 | 2.4:+14529816 | None:intergenic |
ATCCGTTCAAAGGCTGATTA+TGG | 0.223234 | 2.4:-14528130 | MS.gene94650:CDS |
ATCATGTATGCGTATTGTTC+TGG | 0.231249 | 2.4:+14533311 | None:intergenic |
TCCTGGTGTTTATACTTTGC+AGG | 0.236487 | 2.4:-14532853 | MS.gene94650:intron |
GAATCTTTGTGTTAATAATA+AGG | 0.244185 | 2.4:-14533027 | MS.gene94650:CDS |
GAGACTGCTTCATGATTATA+TGG | 0.255392 | 2.4:-14533105 | MS.gene94650:CDS |
GTCAATAGCTGGAATGAAAA+TGG | 0.263376 | 2.4:-14529688 | MS.gene94650:CDS |
TTTCGTCAGTTACTCATATA+TGG | 0.283293 | 2.4:-14529719 | MS.gene94650:CDS |
AGACTTGGATAAGATTGTTT+TGG | 0.293320 | 2.4:-14525266 | MS.gene94650:CDS |
AACTCACATGTAGGAACATT+TGG | 0.294967 | 2.4:+14532918 | None:intergenic |
GTCAAAAGGTTCTATTATAA+TGG | 0.303441 | 2.4:+14530335 | None:intergenic |
GATGCAGTTCCTCAGGAAAA+TGG | 0.304665 | 2.4:-14525344 | MS.gene94650:intron |
CTCGAAATGCCTACCGGAAC+CGG | 0.310280 | 2.4:-14533248 | MS.gene94650:CDS |
GAATTATGGACGGCTCTTAC+TGG | 0.323377 | 2.4:-14529779 | MS.gene94650:CDS |
CTTGGCGTAGTGAGGAATTA+TGG | 0.332072 | 2.4:-14529793 | MS.gene94650:CDS |
TTCTGGGTATATGTTGTCAT+AGG | 0.332524 | 2.4:+14533328 | None:intergenic |
ATAGAGAAAACAAAGCTAAC+AGG | 0.337488 | 2.4:+14530519 | None:intergenic |
GATATTATGGCAGCCACCTT+TGG | 0.345249 | 2.4:+14531592 | None:intergenic |
AAGACGAGGGTACAAATCTA+TGG | 0.353646 | 2.4:+14530054 | None:intergenic |
AGTTGACTGCTAGTTGGGTT+AGG | 0.358719 | 2.4:-14532959 | MS.gene94650:CDS |
CGCCAGTCTTATCATATGGC+TGG | 0.359683 | 2.4:+14525320 | None:intergenic |
TATTCCCGATCCTGTATTGC+AGG | 0.361637 | 2.4:-14530298 | MS.gene94650:intron |
CAGTCGGTTGTGATTACATC+TGG | 0.361744 | 2.4:-14530088 | MS.gene94650:CDS |
CAACAGGCTTGTCGAGGGTT+TGG | 0.361821 | 2.4:-14530804 | MS.gene94650:CDS |
TTGTAGGATCTTAGAACGTT+TGG | 0.364279 | 2.4:-14531706 | MS.gene94650:intron |
AGACCACCACATTGGCAAAC+TGG | 0.376041 | 2.4:+14531638 | None:intergenic |
TGGCAAAATCGCATATTGTT+TGG | 0.381225 | 2.4:+14530388 | None:intergenic |
CCATGTCTGTGCTCAAGTTC+AGG | 0.382814 | 2.4:+14527315 | None:intergenic |
TGCTGCTGAGAATCGCGATT+CGG | 0.388778 | 2.4:-14533000 | MS.gene94650:CDS |
GTAAAACTTCGACTGACAAC+AGG | 0.390520 | 2.4:+14530019 | None:intergenic |
GGCCGTTTAGTAATCATGTT+TGG | 0.402094 | 2.4:-14528520 | MS.gene94650:CDS |
ATACTAAAGGAGGCTGTACC+TGG | 0.407094 | 2.4:-14530639 | MS.gene94650:CDS |
GATTATATGGTTAAATGTAT+TGG | 0.407235 | 2.4:-14533092 | MS.gene94650:CDS |
CGCATATTGTTTGGACATGA+AGG | 0.414870 | 2.4:+14530397 | None:intergenic |
CAGTTTCCAAGCGCCCTTCA+AGG | 0.414889 | 2.4:+14530562 | None:intergenic |
TGATTCTTTCTGCATTTCCT+TGG | 0.415162 | 2.4:+14531570 | None:intergenic |
TGTAGGATCTTAGAACGTTT+GGG | 0.418945 | 2.4:-14531705 | MS.gene94650:intron |
GCTCTAAGAGGAGATCTTCC+TGG | 0.422620 | 2.4:-14530782 | MS.gene94650:intron |
TCAGCCTTACGAATATTTCC+AGG | 0.435015 | 2.4:+14530621 | None:intergenic |
TTGCTTAATGTGTACTGAAA+AGG | 0.435940 | 2.4:+14528493 | None:intergenic |
TCCGTTCAAAGGCTGATTAT+GGG | 0.436320 | 2.4:-14528129 | MS.gene94650:CDS |
AGAACGTTTGGGAAGGAGAA+AGG | 0.437314 | 2.4:-14531694 | MS.gene94650:CDS |
TTGCGCTTGGATTGTCTTCG+AGG | 0.437941 | 2.4:-14533052 | MS.gene94650:CDS |
TAGGAAGTTGACTGCTAGTT+GGG | 0.440800 | 2.4:-14532964 | MS.gene94650:CDS |
AACGATCTAAATTGCCTGGC+TGG | 0.444994 | 2.4:-14527364 | MS.gene94650:CDS |
TCAATATTTGCTTGATCCAA+AGG | 0.449619 | 2.4:-14531608 | MS.gene94650:CDS |
TTTGATATGAGAAGTGATCT+TGG | 0.450506 | 2.4:-14529811 | MS.gene94650:CDS |
TCTGCGAAGATGCTTGCGCT+TGG | 0.452658 | 2.4:-14533065 | MS.gene94650:CDS |
TCATGTATGCGTATTGTTCT+GGG | 0.453029 | 2.4:+14533312 | None:intergenic |
TTCTCTATTCTGAACCATGC+TGG | 0.453798 | 2.4:-14530504 | MS.gene94650:CDS |
AGGTTCAAGGCCACAGATGC+TGG | 0.455551 | 2.4:-14530845 | MS.gene94650:CDS |
AATCGCGATTCGGTTGATGC+TGG | 0.456654 | 2.4:-14532990 | MS.gene94650:CDS |
CACCAAACATGATTACTAAA+CGG | 0.458691 | 2.4:+14528518 | None:intergenic |
AGTATATCATCAGGCAAGGC+TGG | 0.460574 | 2.4:+14530657 | None:intergenic |
GTTGACTGCTAGTTGGGTTA+GGG | 0.463079 | 2.4:-14532958 | MS.gene94650:CDS |
TATGATAAGACTGGCGGCAC+TGG | 0.467425 | 2.4:-14525313 | MS.gene94650:CDS |
GCTTGTCTTTATTGAGACTC+AGG | 0.469960 | 2.4:-14529555 | MS.gene94650:CDS |
GTAGGAAGTTGACTGCTAGT+TGG | 0.472417 | 2.4:-14532965 | MS.gene94650:CDS |
CTTGCTGTCTCAGGAAGACT+TGG | 0.475468 | 2.4:-14525281 | MS.gene94650:CDS |
TCTGGGTATATGTTGTCATA+GGG | 0.475829 | 2.4:+14533329 | None:intergenic |
GATAAACGATCTAAATTGCC+TGG | 0.475839 | 2.4:-14527368 | MS.gene94650:CDS |
TCAGCGCTAACCTGCAATAC+AGG | 0.475858 | 2.4:+14530288 | None:intergenic |
TCATTCATTAATGATGACAT+TGG | 0.476660 | 2.4:-14530442 | MS.gene94650:CDS |
GCATATGCAATCTCTTGTTA+AGG | 0.477444 | 2.4:+14529991 | None:intergenic |
GACTCCGTGCTGAATACAAC+AGG | 0.479792 | 2.4:-14530820 | MS.gene94650:CDS |
GTCGAGGGTTTGGCTCTAAG+AGG | 0.480922 | 2.4:-14530794 | MS.gene94650:CDS |
ATATCAAATTTGGTACTGAC+TGG | 0.482837 | 2.4:+14529826 | None:intergenic |
AGGCAAAACAGCAGCAGACC+CGG | 0.483009 | 2.4:+14532875 | None:intergenic |
CTTACATAGCTGCGGATGGT+TGG | 0.483991 | 2.4:-14530689 | MS.gene94650:intron |
TACCGCAAGGCTTGTGATTG+TGG | 0.487141 | 2.4:-14529500 | MS.gene94650:CDS |
TCAATACCTTGAAGGGCGCT+TGG | 0.491459 | 2.4:-14530568 | MS.gene94650:CDS |
CTAACCTGCAATACAGGATC+GGG | 0.491591 | 2.4:+14530294 | None:intergenic |
GTGCCGCCAGTCTTATCATA+TGG | 0.493095 | 2.4:+14525316 | None:intergenic |
GCCTCCTTTAGTATATCATC+AGG | 0.493634 | 2.4:+14530648 | None:intergenic |
CACTCGAACCGTTCATGAGA+TGG | 0.494405 | 2.4:-14533147 | MS.gene94650:CDS |
TGAACTGGTAGGAAGGTTCA+AGG | 0.509007 | 2.4:-14530858 | MS.gene94650:intron |
ATGTCATCATTAATGAATGA+AGG | 0.510570 | 2.4:+14530445 | None:intergenic |
GTGAGGAGGCAGACTGTTGA+TGG | 0.514595 | 2.4:-14531484 | MS.gene94650:CDS |
CTGCCACGGGTAAGAACCAT+AGG | 0.520257 | 2.4:+14529968 | None:intergenic |
AATACAGGATCGGGAATATG+AGG | 0.520368 | 2.4:+14530303 | None:intergenic |
CTTTATTGAGACTCAGGATG+TGG | 0.522127 | 2.4:-14529549 | MS.gene94650:CDS |
ATCGCGATTCGGTTGATGCT+GGG | 0.523924 | 2.4:-14532989 | MS.gene94650:CDS |
ATAAGCTTGATCGGTGATTG+AGG | 0.524887 | 2.4:+14533176 | None:intergenic |
TGAGGCATTCTCTCGTCAAA+AGG | 0.525678 | 2.4:+14530321 | None:intergenic |
CTATGGTTCTTACCCGTGGC+AGG | 0.526008 | 2.4:-14529967 | MS.gene94650:intron |
GATTAGTTCAATACCTTGAA+GGG | 0.526412 | 2.4:-14530575 | MS.gene94650:CDS |
GAACGTTTGGGAAGGAGAAA+GGG | 0.527122 | 2.4:-14531693 | MS.gene94650:CDS |
TGGCATCAGTTGTTCCAGAC+GGG | 0.527343 | 2.4:-14529753 | MS.gene94650:CDS |
TGGATGGTATAGTCAATAGC+TGG | 0.529147 | 2.4:-14529699 | MS.gene94650:CDS |
AAGAGATTGCATATGCCCTA+TGG | 0.532717 | 2.4:-14529984 | MS.gene94650:CDS |
TGCTTACTCGAAATGCCTAC+CGG | 0.534836 | 2.4:-14533254 | MS.gene94650:CDS |
CTTGCCTGATGATATACTAA+AGG | 0.535917 | 2.4:-14530652 | MS.gene94650:CDS |
GAGACAAGCTGCACAGTGTG+TGG | 0.536170 | 2.4:-14528161 | MS.gene94650:CDS |
TTGAGCAGTATGAAAGAGCC+GGG | 0.537766 | 2.4:-14532893 | MS.gene94650:CDS |
TCCCATAATCAGCCTTTGAA+CGG | 0.539525 | 2.4:+14528128 | None:intergenic |
TTTGAGCAGTATGAAAGAGC+CGG | 0.540451 | 2.4:-14532894 | MS.gene94650:CDS |
GCCAGTCTTATCATATGGCT+GGG | 0.540915 | 2.4:+14525321 | None:intergenic |
TGTCTGTGCTCAAGTTCAGG+TGG | 0.543104 | 2.4:+14527318 | None:intergenic |
CAGCCTTTGAACGGATTACA+CGG | 0.544105 | 2.4:+14528137 | None:intergenic |
AGATTAGTTCAATACCTTGA+AGG | 0.545205 | 2.4:-14530576 | MS.gene94650:CDS |
AAACGAACCCTAGATGCAAA+AGG | 0.545284 | 2.4:-14533281 | MS.gene94650:CDS |
AAGGCTTGTGATTGTGGAAG+AGG | 0.550966 | 2.4:-14529494 | MS.gene94650:CDS |
GTGCAATAAATAAGCTTGAT+CGG | 0.552230 | 2.4:+14533167 | None:intergenic |
TGGACGGCTCTTACTGGAGA+TGG | 0.552603 | 2.4:-14529773 | MS.gene94650:CDS |
TTTCCTTACATAGCTGCGGA+TGG | 0.552979 | 2.4:-14530693 | MS.gene94650:intron |
GTCAGTTACTCATATATGGA+TGG | 0.556250 | 2.4:-14529715 | MS.gene94650:CDS |
TGCCCTATGGTTCTTACCCG+TGG | 0.557483 | 2.4:-14529971 | MS.gene94650:CDS |
ATTCGGTTGATGCTGGGTGT+AGG | 0.557643 | 2.4:-14532983 | MS.gene94650:CDS |
TGCAGAGGAAAGGTTGCGGA+AGG | 0.558522 | 2.4:-14528565 | MS.gene94650:intron |
GTCTGTGCTCAAGTTCAGGT+GGG | 0.559132 | 2.4:+14527319 | None:intergenic |
TAAGGCTGAACACTTCATAC+AGG | 0.560962 | 2.4:-14530607 | MS.gene94650:CDS |
GGCTTTGCATATTGCACGTG+AGG | 0.565169 | 2.4:-14527294 | MS.gene94650:intron |
AGCGCAAGCATCTTCGCAGA+CGG | 0.566991 | 2.4:+14533068 | None:intergenic |
GCCCAGCCATATGATAAGAC+TGG | 0.570058 | 2.4:-14525322 | MS.gene94650:CDS |
GGAAACTGAGAATGTAGAGA+AGG | 0.576225 | 2.4:-14530547 | MS.gene94650:CDS |
TATGGTCCAGTTTGCCAATG+TGG | 0.577153 | 2.4:-14531644 | MS.gene94650:CDS |
TTATGGCAAGAGAAGCATCA+TGG | 0.585485 | 2.4:+14530131 | None:intergenic |
CAAGTCTTCCTGAGACAGCA+AGG | 0.587496 | 2.4:+14525282 | None:intergenic |
CCTGAACTTGAGCACAGACA+TGG | 0.588397 | 2.4:-14527315 | MS.gene94650:CDS |
GCTAACCTGCAATACAGGAT+CGG | 0.589494 | 2.4:+14530293 | None:intergenic |
GGGCCGTGTAATCCGTTCAA+AGG | 0.589788 | 2.4:-14528140 | MS.gene94650:CDS |
AGACGAGGGTACAAATCTAT+GGG | 0.589941 | 2.4:+14530055 | None:intergenic |
ACGGAGTCTACCAGCATCTG+TGG | 0.593397 | 2.4:+14530835 | None:intergenic |
AGACTTGGGAATACCTGCCA+CGG | 0.594713 | 2.4:+14529954 | None:intergenic |
CGTTTGGGAAGGAGAAAGGG+TGG | 0.596059 | 2.4:-14531690 | MS.gene94650:CDS |
GCCTGATGATATACTAAAGG+AGG | 0.600840 | 2.4:-14530649 | MS.gene94650:CDS |
TAGAGAAAACAAAGCTAACA+GGG | 0.605030 | 2.4:+14530520 | None:intergenic |
GGTGGCTGCCATAATATCCA+AGG | 0.608556 | 2.4:-14531587 | MS.gene94650:CDS |
CACTTAGTGTGAGTGTGAGG+AGG | 0.610222 | 2.4:-14531498 | MS.gene94650:CDS |
GGCTCTTGACAACTACCGCA+AGG | 0.612315 | 2.4:-14529513 | MS.gene94650:CDS |
ATGGCATCAGTTGTTCCAGA+CGG | 0.612349 | 2.4:-14529754 | MS.gene94650:CDS |
TGAATACAACAGGCTTGTCG+AGG | 0.613730 | 2.4:-14530810 | MS.gene94650:CDS |
AGACAAGCTGCACAGTGTGT+GGG | 0.614502 | 2.4:-14528160 | MS.gene94650:CDS |
TATCAAATTTGGTACTGACT+GGG | 0.616026 | 2.4:+14529827 | None:intergenic |
CTTGTGGGCACATATGCTCG+TGG | 0.620806 | 2.4:-14530363 | MS.gene94650:CDS |
TGTACCTGGAAATATTCGTA+AGG | 0.620968 | 2.4:-14530625 | MS.gene94650:CDS |
GAATACAACAGGCTTGTCGA+GGG | 0.623346 | 2.4:-14530809 | MS.gene94650:CDS |
AAATGAGAGAGTATCCAGCC+AGG | 0.623730 | 2.4:+14527350 | None:intergenic |
GAAGTGATCTTGGCGTAGTG+AGG | 0.623766 | 2.4:-14529801 | MS.gene94650:CDS |
AGCATATGTGCCCACAAGTG+TGG | 0.625189 | 2.4:+14530368 | None:intergenic |
GGATCTTAGAACGTTTGGGA+AGG | 0.632684 | 2.4:-14531701 | MS.gene94650:CDS |
TTCCACAATCACAAGCCTTG+CGG | 0.634257 | 2.4:+14529498 | None:intergenic |
ATATTTGCTTGATCCAAAGG+TGG | 0.635144 | 2.4:-14531605 | MS.gene94650:CDS |
AAGCACTTAGTGTGAGTGTG+AGG | 0.636897 | 2.4:-14531501 | MS.gene94650:CDS |
ACCTGCAAAGTATAAACACC+AGG | 0.637229 | 2.4:+14532852 | None:intergenic |
GGGTTAAAATTCAGAAGACG+AGG | 0.638546 | 2.4:+14530040 | None:intergenic |
GACTTGGGAATACCTGCCAC+GGG | 0.642457 | 2.4:+14529955 | None:intergenic |
CTGGGTATATGTTGTCATAG+GGG | 0.642577 | 2.4:+14533330 | None:intergenic |
CTTTAGTATATCATCAGGCA+AGG | 0.643892 | 2.4:+14530653 | None:intergenic |
GCGTAGTGAGGAATTATGGA+CGG | 0.650573 | 2.4:-14529789 | MS.gene94650:CDS |
TAAAACTTCGACTGACAACA+GGG | 0.657372 | 2.4:+14530020 | None:intergenic |
GGTCCAGTTTGCCAATGTGG+TGG | 0.662911 | 2.4:-14531641 | MS.gene94650:CDS |
GGATGTGGTAGAAACTACAT+TGG | 0.665879 | 2.4:-14529534 | MS.gene94650:CDS |
CAAGCCTGTTGTATTCAGCA+CGG | 0.672490 | 2.4:+14530816 | None:intergenic |
TAGGCATTTCGAGTAAGCAG+TGG | 0.680977 | 2.4:+14533258 | None:intergenic |
ATAACTATAGACCACCACAT+TGG | 0.686192 | 2.4:+14531630 | None:intergenic |
TCATCATTAATGAATGAAGG+CGG | 0.703262 | 2.4:+14530448 | None:intergenic |
CAGCCATATGATAAGACTGG+CGG | 0.704359 | 2.4:-14525319 | MS.gene94650:CDS |
TGCCACGGGTAAGAACCATA+GGG | 0.717466 | 2.4:+14529969 | None:intergenic |
TGCAAAGTATAAACACCAGG+AGG | 0.719601 | 2.4:+14532855 | None:intergenic |
GGTTAAAATTCAGAAGACGA+GGG | 0.721307 | 2.4:+14530041 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 14525237 | 14533387 | 14525237 | ID=MS.gene94650 |
chr2.4 | mRNA | 14525237 | 14533387 | 14525237 | ID=MS.gene94650.t1;Parent=MS.gene94650 |
chr2.4 | exon | 14532854 | 14533387 | 14532854 | ID=MS.gene94650.t1.exon1;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14532854 | 14533387 | 14532854 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14531442 | 14531722 | 14531442 | ID=MS.gene94650.t1.exon2;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14531442 | 14531722 | 14531442 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14530783 | 14530865 | 14530783 | ID=MS.gene94650.t1.exon3;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14530783 | 14530865 | 14530783 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14530299 | 14530702 | 14530299 | ID=MS.gene94650.t1.exon4;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14530299 | 14530702 | 14530299 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14529968 | 14530161 | 14529968 | ID=MS.gene94650.t1.exon5;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14529968 | 14530161 | 14529968 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14529678 | 14529858 | 14529678 | ID=MS.gene94650.t1.exon6;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14529678 | 14529858 | 14529678 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14529470 | 14529594 | 14529470 | ID=MS.gene94650.t1.exon7;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14529470 | 14529594 | 14529470 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14528493 | 14528582 | 14528493 | ID=MS.gene94650.t1.exon8;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14528493 | 14528582 | 14528493 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14528283 | 14528361 | 14528283 | ID=MS.gene94650.t1.exon9;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14528283 | 14528361 | 14528283 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14528106 | 14528182 | 14528106 | ID=MS.gene94650.t1.exon10;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14528106 | 14528182 | 14528106 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14527295 | 14527403 | 14527295 | ID=MS.gene94650.t1.exon11;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14527295 | 14527403 | 14527295 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
chr2.4 | exon | 14525237 | 14525359 | 14525237 | ID=MS.gene94650.t1.exon12;Parent=MS.gene94650.t1 |
chr2.4 | CDS | 14525237 | 14525359 | 14525237 | ID=cds.MS.gene94650.t1;Parent=MS.gene94650.t1 |
Gene Sequence |
Protein sequence |