AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016843

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016843.t1 MTR_5g087550 95.660 576 14 1 1 576 1 565 0.0 1134
MS.gene016843.t1 MTR_5g024880 70.119 589 141 9 1 576 1 567 0.0 825
MS.gene016843.t1 MTR_5g026450 74.019 535 121 3 43 576 25 542 0.0 812
MS.gene016843.t1 MTR_5g091050 73.606 538 115 4 43 576 31 545 0.0 812
MS.gene016843.t1 MTR_5g026460 74.019 535 121 3 43 576 25 542 0.0 812
MS.gene016843.t1 MTR_5g026480 74.019 535 121 3 43 576 25 542 0.0 812
MS.gene016843.t1 MTR_8g072640 69.128 596 151 5 1 576 1 583 0.0 811
MS.gene016843.t1 MTR_5g026430 73.832 535 122 3 43 576 25 542 0.0 810
MS.gene016843.t1 MTR_5g026500 72.998 537 126 3 43 576 30 550 0.0 807
MS.gene016843.t1 MTR_5g024880 67.451 510 131 9 1 497 1 488 0.0 686
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016843.t1 AT1G76490 73.356 593 126 5 1 572 51 632 0.0 877
MS.gene016843.t1 AT2G17370 66.261 575 166 7 2 571 3 554 0.0 765

Find 181 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGTTTATCTACCTTCT+AGG 0.162002 5.2:+74208922 MS.gene016843:CDS
CTGATGTCTGCCATTGCTTC+AGG 0.210943 5.2:+74211977 MS.gene016843:CDS
TAATAGTGAAGTGAAATTAT+TGG 0.221885 5.2:+74209950 MS.gene016843:CDS
AGAAACCTGCCGCAGTTAAT+TGG 0.233252 5.2:+74211402 MS.gene016843:CDS
TTCCCTGACATGGATGTTAT+TGG 0.284863 5.2:+74210686 MS.gene016843:CDS
CTTGCTGGTTCTGCTGTTGC+TGG 0.297128 5.2:+74211539 MS.gene016843:CDS
CTCTTGGCAACCATTGTTGC+TGG 0.337492 5.2:+74211929 MS.gene016843:CDS
GGGAGAGCATCAGAGGCTTT+TGG 0.339690 5.2:-74208748 None:intergenic
TTGGAAGGTTTACCATTAGA+AGG 0.342151 5.2:+74209231 MS.gene016843:CDS
ATGGATGTTATTGGCATATC+AGG 0.348723 5.2:+74210695 MS.gene016843:CDS
CTATTCACTCGAATCGCGGC+TGG 0.351929 5.2:+74209146 MS.gene016843:CDS
CGGTGGTGGTTTGCGGCGGC+CGG 0.353787 5.2:-74208666 None:intergenic
TCTGCTGTTGCTGGCACTCT+TGG 0.363031 5.2:+74211548 MS.gene016843:CDS
GTTGGATGGATTTGAATATA+CGG 0.364431 5.2:+74209341 MS.gene016843:CDS
ATCTACCTTCTAGGTTTCTT+CGG 0.369751 5.2:+74208931 MS.gene016843:CDS
ACGAACATCAGGAAGATCTT+TGG 0.383156 5.2:+74209212 MS.gene016843:CDS
GGAAACAATGGCGGCGAGTT+CGG 0.393903 5.2:-74208893 None:intergenic
TGGTTTGCGGCGGCCGGCGA+TGG 0.401498 5.2:-74208660 None:intergenic
TCGTAATCAAATCCTTCTAA+TGG 0.402585 5.2:-74209243 None:intergenic
CGGCCGCCGCAAACCACCAC+CGG 0.407539 5.2:+74208667 MS.gene016843:CDS
CTCCACTAGGGCAGCCACCT+TGG 0.410701 5.2:-74211498 None:intergenic
GGCGACTACAGAAGGGTGTT+TGG 0.411168 5.2:+74209371 MS.gene016843:CDS
TTCCATCATTGTTATGCAAT+GGG 0.418759 5.2:-74211654 None:intergenic
TGATGTCTGCCATTGCTTCA+GGG 0.419185 5.2:+74211978 MS.gene016843:CDS
AAGGTCTCTCCCATCATTTA+CGG 0.422951 5.2:-74211678 None:intergenic
GGTAGGGTATATTCAAATTC+CGG 0.423676 5.2:+74209296 MS.gene016843:CDS
TGTAAAGCTATACATGCTTC+TGG 0.426419 5.2:+74209414 MS.gene016843:CDS
AGGCTGATTGGCGGTGGTGT+TGG 0.429704 5.2:-74209034 None:intergenic
GGTATTCAGTGTGCTATGGC+TGG 0.436039 5.2:+74210560 MS.gene016843:CDS
TCTGAACATAATGAGGGTTC+AGG 0.440108 5.2:-74209075 None:intergenic
ATGGTGTTGGTGAGGTAGAG+AGG 0.442236 5.2:-74208775 None:intergenic
ACGGCGCCGGTGGTGGTTTG+CGG 0.442491 5.2:-74208673 None:intergenic
ATCTTCCTCTGAACATAATG+AGG 0.443881 5.2:-74209082 None:intergenic
ATGCCAATAACATCCATGTC+AGG 0.447589 5.2:-74210689 None:intergenic
GGTCGCGACGGCGCCGGTGG+TGG 0.447682 5.2:-74208680 None:intergenic
CTTGAACATGCTTGGTGTGA+AGG 0.450968 5.2:+74211871 MS.gene016843:CDS
CAAATTCCGGTGGGTGTGGC+GGG 0.452042 5.2:+74209309 MS.gene016843:CDS
GGCCGGCGATGGAGGTCCAT+TGG 0.456069 5.2:-74208649 None:intergenic
CAAAGAAGATGTGGTGAAGA+AGG 0.463622 5.2:+74211466 MS.gene016843:CDS
TGTGGCGGGACCATTGTTGT+TGG 0.464340 5.2:+74209323 MS.gene016843:CDS
AAGAACGTTCTGCACCCCTT+TGG 0.466291 5.2:-74210645 None:intergenic
TGAAATTATTGGTATTTGAA+AGG 0.467401 5.2:+74209961 MS.gene016843:CDS
TCAATCCAATTAACTGCGGC+AGG 0.468892 5.2:-74211407 None:intergenic
GCTGTTGCTGGCACTCTTGG+CGG 0.470685 5.2:+74211551 MS.gene016843:CDS
GCGGTAGAAAATCTAACAAC+AGG 0.472480 5.2:-74209480 None:intergenic
TTGGTGAGGTAGAGAGGGAG+AGG 0.473154 5.2:-74208769 None:intergenic
ACGCGCTTCTCATGATGGTT+GGG 0.476220 5.2:+74208981 MS.gene016843:CDS
AAGAGTCTCGAGTTTGATCC+TGG 0.476503 5.2:-74211911 None:intergenic
CACCCTTCTGTAGTCGCCAT+TGG 0.478661 5.2:-74209366 None:intergenic
TTCCCATTGCATAACAATGA+TGG 0.478827 5.2:+74211652 MS.gene016843:CDS
CAGCCGCGATTCGAGTGAAT+AGG 0.479278 5.2:-74209145 None:intergenic
TAACTAAAATCTCATCTTGA+GGG 0.480226 5.2:+74212047 MS.gene016843:CDS
CACTTCACTATTAGAAACAT+TGG 0.481381 5.2:-74209940 None:intergenic
CTTCCATCATTGTTATGCAA+TGG 0.481383 5.2:-74211655 None:intergenic
AACTCTCAGGTGGGTACAGT+AGG 0.482262 5.2:+74211815 MS.gene016843:intron
GCCGCAGTTAATTGGATTGA+GGG 0.485552 5.2:+74211410 MS.gene016843:CDS
ATGATGGAAGCCGTAAATGA+TGG 0.485702 5.2:+74211668 MS.gene016843:CDS
TCTGCTTGCTTGAACATGCT+TGG 0.486251 5.2:+74211863 MS.gene016843:CDS
TATGAGATTTACATGTAGTA+CGG 0.488443 5.2:+74210595 MS.gene016843:CDS
GCAACACGCGCTTCTCATGA+TGG 0.493338 5.2:+74208976 MS.gene016843:CDS
AGGGTTGGTCGCGACGGCGC+CGG 0.495727 5.2:-74208686 None:intergenic
CGTATTATCTCCTCCACAGA+TGG 0.496364 5.2:+74208824 MS.gene016843:CDS
TGGTGTTGGTGAGGTAGAGA+GGG 0.497806 5.2:-74208774 None:intergenic
TCAGGTCGAGTAGATTTGCC+AGG 0.497890 5.2:+74210531 MS.gene016843:intron
GAGTTTGCGGAGAGGCTGAT+TGG 0.498628 5.2:-74209046 None:intergenic
ATGTAGTACGGGTGATGCCA+TGG 0.499191 5.2:+74210607 MS.gene016843:CDS
ACTCTCAGGTGGGTACAGTA+GGG 0.499741 5.2:+74211816 MS.gene016843:intron
CACGCGCTTCTCATGATGGT+TGG 0.499824 5.2:+74208980 MS.gene016843:CDS
GAAGAAGAGCGTGAAGAAGA+TGG 0.505810 5.2:-74208794 None:intergenic
GGATGAACATGGTCTCCAAA+GGG 0.506615 5.2:+74210630 MS.gene016843:CDS
TGCCGCAGTTAATTGGATTG+AGG 0.507886 5.2:+74211409 MS.gene016843:CDS
GGCGGTGGTGTTGGTAGCGG+TGG 0.508822 5.2:-74209025 None:intergenic
GCGGGACCATTGTTGTTGGA+TGG 0.508898 5.2:+74209327 MS.gene016843:CDS
TATTCAAATTCCGGTGGGTG+TGG 0.510401 5.2:+74209305 MS.gene016843:CDS
TGCAAAATCACCTCAATGGA+TGG 0.510987 5.2:-74211719 None:intergenic
CAATACCGAAGAAACCTAGA+AGG 0.514959 5.2:-74208936 None:intergenic
GAAGCTTTACAACGAACATC+AGG 0.515590 5.2:+74209201 MS.gene016843:CDS
AGGATCAAACTCGAGACTCT+TGG 0.517457 5.2:+74211913 MS.gene016843:CDS
GGGATGAACATGGTCTCCAA+AGG 0.517477 5.2:+74210629 MS.gene016843:CDS
GCGGAGAGGCTGATTGGCGG+TGG 0.519891 5.2:-74209040 None:intergenic
TCAAATTCCGGTGGGTGTGG+CGG 0.520146 5.2:+74209308 MS.gene016843:CDS
GATTTGAGACGGTGGGAATG+AGG 0.521781 5.2:-74208706 None:intergenic
TTCTTTAGGAAATTATTGCT+CGG 0.523240 5.2:+74211376 MS.gene016843:intron
GTTCAGGTGAGGTGAGTTTG+CGG 0.524230 5.2:-74209059 None:intergenic
AGTAGATTTGCCAGGCTGCT+AGG 0.524917 5.2:+74210539 MS.gene016843:CDS
ATTGGCGGTGGTGTTGGTAG+CGG 0.527463 5.2:-74209028 None:intergenic
ATGAGATTTACATGTAGTAC+GGG 0.530951 5.2:+74210596 MS.gene016843:CDS
TCGAAATGATTTCCCTGACA+TGG 0.532844 5.2:+74210676 MS.gene016843:CDS
GCTAGGTATTCAGTGTGCTA+TGG 0.535257 5.2:+74210556 MS.gene016843:CDS
CGGAAACAATGTTACTAGCA+TGG 0.537129 5.2:-74211583 None:intergenic
CACGACGAATTGCCGCGGCT+CGG 0.537941 5.2:-74209179 None:intergenic
GTTGGTCGCGACGGCGCCGG+TGG 0.538330 5.2:-74208683 None:intergenic
TGTAGTACGGGTGATGCCAT+GGG 0.538474 5.2:+74210608 MS.gene016843:CDS
AACCAATGGACCTCCATCGC+CGG 0.539913 5.2:+74208647 None:intergenic
AGTGACAATGCCATCCATTG+AGG 0.542652 5.2:+74211709 MS.gene016843:CDS
GGAAACAATGTTACTAGCAT+GGG 0.543165 5.2:-74211582 None:intergenic
GGGAGATTGTTTCCGAGCCG+CGG 0.546544 5.2:+74209167 MS.gene016843:CDS
GGGATGCAAAATCACCTCAA+TGG 0.547483 5.2:-74211723 None:intergenic
TTGAACATGCTTGGTGTGAA+GGG 0.547739 5.2:+74211872 MS.gene016843:CDS
AATGGTCCCGCCACACCCAC+CGG 0.552343 5.2:-74209315 None:intergenic
CTCTCAGGTGGGTACAGTAG+GGG 0.552717 5.2:+74211817 MS.gene016843:intron
GTTCCAATGGCGACTACAGA+AGG 0.553048 5.2:+74209363 MS.gene016843:CDS
TTCAATTGTAAACTCCGTTG+TGG 0.556280 5.2:+74209107 MS.gene016843:CDS
TTTGCGGCGGCCGGCGATGG+AGG 0.557103 5.2:-74208657 None:intergenic
AGGGCAGTGTTGTGAAATGC+CGG 0.557390 5.2:+74209275 MS.gene016843:CDS
GGAGACCATGTTCATCCCCA+TGG 0.558985 5.2:-74210624 None:intergenic
GTATTCAGTGTGCTATGGCT+GGG 0.560186 5.2:+74210561 MS.gene016843:CDS
ATTGTAAACTCCGTTGTGGA+AGG 0.560846 5.2:+74209111 MS.gene016843:CDS
GGATCTTGTCACGCCATCTG+TGG 0.561301 5.2:-74208837 None:intergenic
GCGCCGGTGGTGGTTTGCGG+CGG 0.561395 5.2:-74208670 None:intergenic
GGAATGAGGGTTGGTCGCGA+CGG 0.562280 5.2:-74208692 None:intergenic
CATGAAGAGGAGTGGAGCTA+CGG 0.562649 5.2:-74208858 None:intergenic
TTGGTTGCTAGTACAAATAG+AGG 0.563083 5.2:+74209390 MS.gene016843:CDS
GTAACTAAAATCTCATCTTG+AGG 0.563271 5.2:+74212046 MS.gene016843:CDS
GTTGGTAGCGGTGGTGATGA+CGG 0.563444 5.2:-74209016 None:intergenic
AGGGAGAGGGAGAGCATCAG+AGG 0.566983 5.2:-74208755 None:intergenic
TGATGGAAGCCGTAAATGAT+GGG 0.568019 5.2:+74211669 MS.gene016843:CDS
GTGAAATTGACGACATGAAG+AGG 0.568568 5.2:-74208871 None:intergenic
GAGACGGTGGGAATGAGGGT+TGG 0.577164 5.2:-74208701 None:intergenic
TATTCACTCGAATCGCGGCT+GGG 0.580700 5.2:+74209147 MS.gene016843:CDS
CTTCCTATTCACTCGAATCG+CGG 0.581947 5.2:+74209142 MS.gene016843:CDS
GGTGCAAGCAAGGAGGAACC+AGG 0.582386 5.2:+74211893 MS.gene016843:CDS
TAAAACAGCTCCAGCAACAA+TGG 0.583428 5.2:-74211939 None:intergenic
GTAGATAAACGAAGCGATGA+GGG 0.584394 5.2:-74208914 None:intergenic
TGGTGAGGTAGAGAGGGAGA+GGG 0.584669 5.2:-74208768 None:intergenic
TCTTCCTCTGAACATAATGA+GGG 0.585268 5.2:-74209081 None:intergenic
TCTCAGGTGGGTACAGTAGG+GGG 0.588143 5.2:+74211818 MS.gene016843:intron
GAGCGTGAAGAAGATGGTGT+TGG 0.589470 5.2:-74208788 None:intergenic
AGTGTTGTGAAATGCCGGTA+GGG 0.592083 5.2:+74209280 MS.gene016843:CDS
TGAGCATGTTTAGCTCCACT+AGG 0.592566 5.2:-74211511 None:intergenic
TGCCAATAACATCCATGTCA+GGG 0.592633 5.2:-74210688 None:intergenic
TTGAGCTGGATCTTGACCTG+TGG 0.594253 5.2:-74211618 None:intergenic
CAGTGTTGTGAAATGCCGGT+AGG 0.595497 5.2:+74209279 MS.gene016843:CDS
GACCAAGGTGGCTGCCCTAG+TGG 0.595928 5.2:+74211496 MS.gene016843:CDS
TTTGCGGAGAGGCTGATTGG+CGG 0.596989 5.2:-74209043 None:intergenic
GACTAGTTGCCCTGAAGCAA+TGG 0.597061 5.2:-74211987 None:intergenic
ATGATCTGTTGTATTTCATG+TGG 0.597760 5.2:-74212015 None:intergenic
TGGTGTGAAGGGTGCAAGCA+AGG 0.600451 5.2:+74211883 MS.gene016843:CDS
TGATGCCATGGGGATGAACA+TGG 0.600533 5.2:+74210619 MS.gene016843:CDS
ATTTGAATATACGGTTCCAA+TGG 0.603145 5.2:+74209350 MS.gene016843:CDS
GCTAATGTATCAGAATTCAA+AGG 0.604270 5.2:-74209540 None:intergenic
TTAATTGGATTGAGGGACGC+GGG 0.604701 5.2:+74211417 MS.gene016843:CDS
TCTTGTCACGCCATCTGTGG+AGG 0.605289 5.2:-74208834 None:intergenic
ACACTGAATACCTAGCAGCC+TGG 0.605740 5.2:-74210549 None:intergenic
AGGGTATATTCAAATTCCGG+TGG 0.606973 5.2:+74209299 MS.gene016843:CDS
GAGCATGTTTAGCTCCACTA+GGG 0.606988 5.2:-74211510 None:intergenic
AGCAACTATCAAAGAAGATG+TGG 0.607192 5.2:+74211457 MS.gene016843:CDS
ATTTGAGACGGTGGGAATGA+GGG 0.610172 5.2:-74208705 None:intergenic
TGTCAGGGAAATCATTTCGA+AGG 0.610857 5.2:-74210673 None:intergenic
ACATCAGGAAGATCTTTGGA+AGG 0.611811 5.2:+74209216 MS.gene016843:CDS
CGAAGCGATGAGGGAAACAA+TGG 0.612271 5.2:-74208905 None:intergenic
GGAATTTGAATATACCCTAC+CGG 0.615358 5.2:-74209294 None:intergenic
GGTAGATAAACGAAGCGATG+AGG 0.616427 5.2:-74208915 None:intergenic
GGAACGTGATTTGAGACGGT+GGG 0.616597 5.2:-74208713 None:intergenic
GAGGGGAACGTGATTTGAGA+CGG 0.616715 5.2:-74208717 None:intergenic
GTTAATTGGATTGAGGGACG+CGG 0.624111 5.2:+74211416 MS.gene016843:CDS
TGGTTGCTAGTACAAATAGA+GGG 0.629909 5.2:+74209391 MS.gene016843:CDS
CAGCAACAGCAGAACCAGCA+AGG 0.636800 5.2:-74211538 None:intergenic
TGAAGAAGATGGTGTTGGTG+AGG 0.637139 5.2:-74208783 None:intergenic
ATTGACGACATGAAGAGGAG+TGG 0.638509 5.2:-74208866 None:intergenic
TCAAATCCATCCAACAACAA+TGG 0.643648 5.2:-74209333 None:intergenic
TGAACCCTCATTATGTTCAG+AGG 0.645685 5.2:+74209077 MS.gene016843:CDS
GATGAACATGGTCTCCAAAG+GGG 0.647108 5.2:+74210631 MS.gene016843:CDS
GGGAACGTGATTTGAGACGG+TGG 0.654216 5.2:-74208714 None:intergenic
TTCCAATGGCGACTACAGAA+GGG 0.659674 5.2:+74209364 MS.gene016843:CDS
GGGTATATTCAAATTCCGGT+GGG 0.660198 5.2:+74209300 MS.gene016843:CDS
AGCGATGAGGGAAACAATGG+CGG 0.660738 5.2:-74208902 None:intergenic
ACATAATGAGGGTTCAGGTG+AGG 0.664851 5.2:-74209070 None:intergenic
AGGTATGCTACCTTCCACAA+CGG 0.666144 5.2:-74209121 None:intergenic
GCATTGTCACTGAAACGTGA+AGG 0.666148 5.2:-74211697 None:intergenic
CGCGATTCGAGTGAATAGGA+AGG 0.675620 5.2:-74209141 None:intergenic
AGCTTCACGACGAATTGCCG+CGG 0.679867 5.2:-74209184 None:intergenic
GGTGAGGTGAGTTTGCGGAG+AGG 0.683699 5.2:-74209054 None:intergenic
GTGGAGGAGATAATACGCGA+CGG 0.700195 5.2:-74208818 None:intergenic
AAAGCTATACATGCTTCTGG+TGG 0.709791 5.2:+74209417 MS.gene016843:CDS
TGGTGATGACGGTGTCATCG+AGG 0.717864 5.2:-74209005 None:intergenic
TCCCTCAATCCAATTAACTG+CGG 0.724361 5.2:-74211411 None:intergenic
TGTGAAGGGTGCAAGCAAGG+AGG 0.729907 5.2:+74211886 MS.gene016843:CDS
GAAGAAGGTATTGAAGACCA+AGG 0.742555 5.2:+74211481 MS.gene016843:CDS
GAAGGTATTGAAGACCAAGG+TGG 0.762853 5.2:+74211484 MS.gene016843:CDS
GTAGTACGGGTGATGCCATG+GGG 0.765847 5.2:+74210609 MS.gene016843:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATAAGTTAATGTAAT+TGG - chr5.2:74210882-74210901 None:intergenic 15.0%
!! AACTAGAAATGTAAATAAAT+TGG - chr5.2:74211145-74211164 None:intergenic 15.0%
!! CAAAAAAACATATAAAACTT+AGG - chr5.2:74211795-74211814 None:intergenic 15.0%
!! TAAGATTAAAATAAACTGTA+GGG - chr5.2:74211746-74211765 None:intergenic 15.0%
!! TTAAGATTAAAATAAACTGT+AGG - chr5.2:74211747-74211766 None:intergenic 15.0%
!!! CATGCTAAAATAATTTTAAT+GGG + chr5.2:74211311-74211330 MS.gene016843:intron 15.0%
!!! TTTTGAATTTTGATTTTGAA+TGG + chr5.2:74209592-74209611 MS.gene016843:intron 15.0%
!! ACAAGTGTAAATAATGTAAT+TGG - chr5.2:74210841-74210860 None:intergenic 20.0%
!! ACTTATGAAAACAACTTATA+AGG - chr5.2:74209714-74209733 None:intergenic 20.0%
!! ATAAAAGATGGATAAAATCA+AGG - chr5.2:74210915-74210934 None:intergenic 20.0%
!! ATTCCATAAATTCAATACAT+TGG + chr5.2:74210970-74210989 MS.gene016843:intron 20.0%
!! CTTATTATTGGTATATGAAA+GGG + chr5.2:74209842-74209861 MS.gene016843:intron 20.0%
!! GAAATTGAATATGGTTTATT+GGG + chr5.2:74210452-74210471 MS.gene016843:intron 20.0%
!! TAATAGTGAAGTGAAATTAT+TGG + chr5.2:74209950-74209969 MS.gene016843:CDS 20.0%
!! TAGAAATGTAAATAAATTGG+TGG - chr5.2:74211142-74211161 None:intergenic 20.0%
!! TCTTATTATTGGTATATGAA+AGG + chr5.2:74209841-74209860 MS.gene016843:intron 20.0%
!! TGAAATTATTGGTATTTGAA+AGG + chr5.2:74209961-74209980 MS.gene016843:CDS 20.0%
!! TGAAATTGAATATGGTTTAT+TGG + chr5.2:74210451-74210470 MS.gene016843:intron 20.0%
!! TTAAACATCGAAAAACAAAA+TGG - chr5.2:74210379-74210398 None:intergenic 20.0%
!!! AATAATTTTAATGGGAACAT+TGG + chr5.2:74211319-74211338 MS.gene016843:intron 20.0%
!!! ATTTTGAATGGTTTTGTATT+TGG + chr5.2:74209604-74209623 MS.gene016843:intron 20.0%
!!! GCATGCTAAAATAATTTTAA+TGG + chr5.2:74211310-74211329 MS.gene016843:intron 20.0%
!!! TAATAATTTATGGTGAGTTT+TGG + chr5.2:74210490-74210509 MS.gene016843:intron 20.0%
!!! TATCCATCTTTTATTGTTAT+AGG + chr5.2:74210921-74210940 MS.gene016843:intron 20.0%
!!! TTGGATTTTGAAATTGAATA+TGG + chr5.2:74210443-74210462 MS.gene016843:intron 20.0%
! AATAAATGCTAGAACACATT+AGG - chr5.2:74211178-74211197 None:intergenic 25.0%
! AATTATGAAAATCTTGCATG+TGG + chr5.2:74209909-74209928 MS.gene016843:intron 25.0%
! AATTTGAGCAAAGAAAATAG+AGG + chr5.2:74210419-74210438 MS.gene016843:intron 25.0%
! ACAAATAAGGTAATTCAGAT+TGG + chr5.2:74209817-74209836 MS.gene016843:intron 25.0%
! ACACCAATGTATTGAATTTA+TGG - chr5.2:74210976-74210995 None:intergenic 25.0%
! ACACCTATAACAATAAAAGA+TGG - chr5.2:74210927-74210946 None:intergenic 25.0%
! ACTATCTTAATCTCCTTATT+TGG + chr5.2:74211265-74211284 MS.gene016843:intron 25.0%
! AGGAATCAAATAACCAAATA+AGG - chr5.2:74211281-74211300 None:intergenic 25.0%
! ATTATGAAAATCTTGCATGT+GGG + chr5.2:74209910-74209929 MS.gene016843:intron 25.0%
! TATGAGATTTACATGTAGTA+CGG + chr5.2:74210595-74210614 MS.gene016843:CDS 25.0%
!! GAAATGAATATAGTTCTGTT+TGG + chr5.2:74209628-74209647 MS.gene016843:intron 25.0%
!! TATAGTTCTGTTTGGATTAT+CGG + chr5.2:74209636-74209655 MS.gene016843:intron 25.0%
!! TATTGGTATTTGAAAGGTAT+TGG + chr5.2:74209967-74209986 MS.gene016843:intron 25.0%
!! TTCTTTAGGAAATTATTGCT+CGG + chr5.2:74211376-74211395 MS.gene016843:intron 25.0%
!! TTGATTACGAAGCAATTTTA+GGG + chr5.2:74209256-74209275 MS.gene016843:CDS 25.0%
!! TTTGATTACGAAGCAATTTT+AGG + chr5.2:74209255-74209274 MS.gene016843:CDS 25.0%
!! TTTTCCAATTTAATAGCTCT+AGG + chr5.2:74211769-74211788 MS.gene016843:intron 25.0%
!!! ATATGTTTTTTTGAACTCTC+AGG + chr5.2:74211802-74211821 MS.gene016843:intron 25.0%
!!! TTATCTGCTTTTTGAGAAAA+TGG + chr5.2:74211064-74211083 MS.gene016843:intron 25.0%
AAAATGGTTATGCAAAAGCA+TGG + chr5.2:74211080-74211099 MS.gene016843:intron 30.0%
ACAGTAAAAACTTTATGTCG+TGG + chr5.2:74210261-74210280 MS.gene016843:intron 30.0%
ATGAGATTTACATGTAGTAC+GGG + chr5.2:74210596-74210615 MS.gene016843:CDS 30.0%
ATGATCTGTTGTATTTCATG+TGG - chr5.2:74212018-74212037 None:intergenic 30.0%
ATTTGAATATACGGTTCCAA+TGG + chr5.2:74209350-74209369 MS.gene016843:CDS 30.0%
CACTTCACTATTAGAAACAT+TGG - chr5.2:74209943-74209962 None:intergenic 30.0%
CTTCTAAACAGTGTTAATGT+TGG + chr5.2:74209785-74209804 MS.gene016843:intron 30.0%
GATAAAATCAAGGATGACAA+TGG - chr5.2:74210905-74210924 None:intergenic 30.0%
GCTAATGTATCAGAATTCAA+AGG - chr5.2:74209543-74209562 None:intergenic 30.0%
TCGTAATCAAATCCTTCTAA+TGG - chr5.2:74209246-74209265 None:intergenic 30.0%
TTCAAAAGATGCAAGTTAAC+TGG - chr5.2:74211239-74211258 None:intergenic 30.0%
TTCCATCATTGTTATGCAAT+GGG - chr5.2:74211657-74211676 None:intergenic 30.0%
TTGGTTGATTAGCACAAATA+AGG + chr5.2:74209804-74209823 MS.gene016843:intron 30.0%
TTTAAATATCTCCGCATTTG+TGG - chr5.2:74210097-74210116 None:intergenic 30.0%
! ACAAACAACCATCACATTTT+TGG - chr5.2:74211346-74211365 None:intergenic 30.0%
! ACTTGTTTCTTTCATGAAAG+TGG + chr5.2:74210855-74210874 MS.gene016843:intron 30.0%
! AGGTGTTATATGATTTGAAC+TGG + chr5.2:74210941-74210960 MS.gene016843:intron 30.0%
! GTTGGATGGATTTGAATATA+CGG + chr5.2:74209341-74209360 MS.gene016843:CDS 30.0%
! TTCAGATTGGCTCTTATTAT+TGG + chr5.2:74209830-74209849 MS.gene016843:intron 30.0%
! TTCTCAGTTGAAGTTTTTCT+TGG + chr5.2:74209512-74209531 MS.gene016843:CDS 30.0%
! TTTTAGCATGCATAGATTAC+AGG - chr5.2:74211301-74211320 None:intergenic 30.0%
!! TTGTACTGACTTGATTCTTT+AGG + chr5.2:74211362-74211381 MS.gene016843:intron 30.0%
AAATTCCATCCAAATGGCAA+CGG - chr5.2:74210727-74210746 None:intergenic 35.0%
ACAAGGAAATTCCATCCAAA+TGG - chr5.2:74210733-74210752 None:intergenic 35.0%
ACATTGGACCAAAAATGTGA+TGG + chr5.2:74211335-74211354 MS.gene016843:intron 35.0%
AGCAACTATCAAAGAAGATG+TGG + chr5.2:74211457-74211476 MS.gene016843:CDS 35.0%
ATCTACCTTCTAGGTTTCTT+CGG + chr5.2:74208931-74208950 MS.gene016843:CDS 35.0%
ATCTTCCTCTGAACATAATG+AGG - chr5.2:74209085-74209104 None:intergenic 35.0%
ATGGATGTTATTGGCATATC+AGG + chr5.2:74210695-74210714 MS.gene016843:CDS 35.0%
CTTCCATCATTGTTATGCAA+TGG - chr5.2:74211658-74211677 None:intergenic 35.0%
CTTTGCAATATATCTGAACG+CGG - chr5.2:74210196-74210215 None:intergenic 35.0%
GAGCAAAGAAAATAGAGGAT+TGG + chr5.2:74210424-74210443 MS.gene016843:intron 35.0%
GCTTAACTAGAGAAGAAACA+AGG - chr5.2:74210750-74210769 None:intergenic 35.0%
GGAAACAATGTTACTAGCAT+GGG - chr5.2:74211585-74211604 None:intergenic 35.0%
GGAATTTGAATATACCCTAC+CGG - chr5.2:74209297-74209316 None:intergenic 35.0%
GGTAGGGTATATTCAAATTC+CGG + chr5.2:74209296-74209315 MS.gene016843:CDS 35.0%
TAGGCCTAGAGCTATTAAAT+TGG - chr5.2:74211776-74211795 None:intergenic 35.0%
TCAAATCCATCCAACAACAA+TGG - chr5.2:74209336-74209355 None:intergenic 35.0%
TCTTCCTCTGAACATAATGA+GGG - chr5.2:74209084-74209103 None:intergenic 35.0%
TGAAGCACAAGCAAAACAAA+TGG - chr5.2:74210792-74210811 None:intergenic 35.0%
TGGAAGACTAAATACCAAAC+AGG - chr5.2:74211219-74211238 None:intergenic 35.0%
TGGTTGCTAGTACAAATAGA+GGG + chr5.2:74209391-74209410 MS.gene016843:CDS 35.0%
TGTAAAGCTATACATGCTTC+TGG + chr5.2:74209414-74209433 MS.gene016843:CDS 35.0%
TTCAATTGTAAACTCCGTTG+TGG + chr5.2:74209107-74209126 MS.gene016843:CDS 35.0%
TTCCCATTGCATAACAATGA+TGG + chr5.2:74211652-74211671 MS.gene016843:CDS 35.0%
TTGACCTGTGGCTATAAAAA+TGG - chr5.2:74211609-74211628 None:intergenic 35.0%
TTGGAAGGTTTACCATTAGA+AGG + chr5.2:74209231-74209250 MS.gene016843:CDS 35.0%
TTGGTTGCTAGTACAAATAG+AGG + chr5.2:74209390-74209409 MS.gene016843:CDS 35.0%
TTTGCAATATATCTGAACGC+GGG - chr5.2:74210195-74210214 None:intergenic 35.0%
! GAACTTTCAACATTTTGAGC+TGG - chr5.2:74211635-74211654 None:intergenic 35.0%
! TCAGTTGAAGTTTTTCTTGG+AGG + chr5.2:74209515-74209534 MS.gene016843:CDS 35.0%
!! TTAACTTGTTGTCGCGAATT+GGG + chr5.2:74210144-74210163 MS.gene016843:intron 35.0%
!! TTTAACTTGTTGTCGCGAAT+TGG + chr5.2:74210143-74210162 MS.gene016843:intron 35.0%
!!! CATTAGCTGTTGTTTTCAAC+AGG + chr5.2:74209556-74209575 MS.gene016843:intron 35.0%
!!! GTTTTTTTGAACTCTCAGGT+GGG + chr5.2:74211806-74211825 MS.gene016843:intron 35.0%
!!! TGTTTGTTTGCTGTGTTTTC+AGG + chr5.2:74210513-74210532 MS.gene016843:intron 35.0%
!!! TGTTTTTTTGAACTCTCAGG+TGG + chr5.2:74211805-74211824 MS.gene016843:intron 35.0%
AAAGCTATACATGCTTCTGG+TGG + chr5.2:74209417-74209436 MS.gene016843:CDS 40.0%
AACATGCTCAAAAACCTTGC+TGG + chr5.2:74211524-74211543 MS.gene016843:CDS 40.0%
AAGGTCTCTCCCATCATTTA+CGG - chr5.2:74211681-74211700 None:intergenic 40.0%
AATTGGACCACTTCCATGAA+AGG - chr5.2:74210824-74210843 None:intergenic 40.0%
ACATCAGGAAGATCTTTGGA+AGG + chr5.2:74209216-74209235 MS.gene016843:CDS 40.0%
ACCTGTGGCTATAAAAATGG+CGG - chr5.2:74211606-74211625 None:intergenic 40.0%
ACGAACATCAGGAAGATCTT+TGG + chr5.2:74209212-74209231 MS.gene016843:CDS 40.0%
ACGCGGGAAATGAATCTTTA+TGG - chr5.2:74210179-74210198 None:intergenic 40.0%
AGGGTATATTCAAATTCCGG+TGG + chr5.2:74209299-74209318 MS.gene016843:CDS 40.0%
AGGTAATTTCCGTTGCCATT+TGG + chr5.2:74210715-74210734 MS.gene016843:intron 40.0%
ATGAAAGGGATAGCTTGGTT+GGG + chr5.2:74209856-74209875 MS.gene016843:intron 40.0%
ATGCCAATAACATCCATGTC+AGG - chr5.2:74210692-74210711 None:intergenic 40.0%
ATTGGACCACTTCCATGAAA+GGG - chr5.2:74210823-74210842 None:intergenic 40.0%
ATTGTAAACTCCGTTGTGGA+AGG + chr5.2:74209111-74209130 MS.gene016843:CDS 40.0%
CAAAGAAGATGTGGTGAAGA+AGG + chr5.2:74211466-74211485 MS.gene016843:CDS 40.0%
CAATACCGAAGAAACCTAGA+AGG - chr5.2:74208939-74208958 None:intergenic 40.0%
CCATGTTGTAGTTGTAACTG+AGG - chr5.2:74210239-74210258 None:intergenic 40.0%
CCTCAGTTACAACTACAACA+TGG + chr5.2:74210236-74210255 MS.gene016843:intron 40.0%
CGATGTATTGTGAAGAGTTG+TGG + chr5.2:74210047-74210066 MS.gene016843:intron 40.0%
CGGAAACAATGTTACTAGCA+TGG - chr5.2:74211586-74211605 None:intergenic 40.0%
GAAGCTTTACAACGAACATC+AGG + chr5.2:74209201-74209220 MS.gene016843:CDS 40.0%
GCGGTAGAAAATCTAACAAC+AGG - chr5.2:74209483-74209502 None:intergenic 40.0%
GCTTCGTTTATCTACCTTCT+AGG + chr5.2:74208922-74208941 MS.gene016843:CDS 40.0%
GGGTATATTCAAATTCCGGT+GGG + chr5.2:74209300-74209319 MS.gene016843:CDS 40.0%
GGTATATGAAAGGGATAGCT+TGG + chr5.2:74209851-74209870 MS.gene016843:intron 40.0%
GTAGATAAACGAAGCGATGA+GGG - chr5.2:74208917-74208936 None:intergenic 40.0%
GTGAAATTGACGACATGAAG+AGG - chr5.2:74208874-74208893 None:intergenic 40.0%
TAAAACAGCTCCAGCAACAA+TGG - chr5.2:74211942-74211961 None:intergenic 40.0%
TATGAAAGGGATAGCTTGGT+TGG + chr5.2:74209855-74209874 MS.gene016843:intron 40.0%
TCCCTCAATCCAATTAACTG+CGG - chr5.2:74211414-74211433 None:intergenic 40.0%
TCGAAATGATTTCCCTGACA+TGG + chr5.2:74210676-74210695 MS.gene016843:CDS 40.0%
TCTGAACATAATGAGGGTTC+AGG - chr5.2:74209078-74209097 None:intergenic 40.0%
TGAACCCTCATTATGTTCAG+AGG + chr5.2:74209077-74209096 MS.gene016843:CDS 40.0%
TGATGGAAGCCGTAAATGAT+GGG + chr5.2:74211669-74211688 MS.gene016843:CDS 40.0%
TGCAAAATCACCTCAATGGA+TGG - chr5.2:74211722-74211741 None:intergenic 40.0%
TGCCAATAACATCCATGTCA+GGG - chr5.2:74210691-74210710 None:intergenic 40.0%
TGGTATTCATGACATCATGC+AGG - chr5.2:74210772-74210791 None:intergenic 40.0%
TGTCAGGGAAATCATTTCGA+AGG - chr5.2:74210676-74210695 None:intergenic 40.0%
TTCACACATTGTCCCTTTCA+TGG + chr5.2:74210808-74210827 MS.gene016843:intron 40.0%
TTCCCTGACATGGATGTTAT+TGG + chr5.2:74210686-74210705 MS.gene016843:CDS 40.0%
TTGTCGTGTCAAATCCTGTT+TGG + chr5.2:74211202-74211221 MS.gene016843:intron 40.0%
! AATTTCCGTTGCCATTTGGA+TGG + chr5.2:74210719-74210738 MS.gene016843:intron 40.0%
! ATGATGGAAGCCGTAAATGA+TGG + chr5.2:74211668-74211687 MS.gene016843:CDS 40.0%
! CAACTGAGAAGCTCTTTTAG+CGG - chr5.2:74209502-74209521 None:intergenic 40.0%
!! GAAGAAGGTATTGAAGACCA+AGG + chr5.2:74211481-74211500 MS.gene016843:CDS 40.0%
!! TTGAACATGCTTGGTGTGAA+GGG + chr5.2:74211872-74211891 MS.gene016843:CDS 40.0%
AAGAGTCTCGAGTTTGATCC+TGG - chr5.2:74211914-74211933 None:intergenic 45.0%
ACATAATGAGGGTTCAGGTG+AGG - chr5.2:74209073-74209092 None:intergenic 45.0%
AGAAACCTGCCGCAGTTAAT+TGG + chr5.2:74211402-74211421 MS.gene016843:CDS 45.0%
AGGATCAAACTCGAGACTCT+TGG + chr5.2:74211913-74211932 MS.gene016843:CDS 45.0%
AGGTATGCTACCTTCCACAA+CGG - chr5.2:74209124-74209143 None:intergenic 45.0%
AGTGACAATGCCATCCATTG+AGG + chr5.2:74211709-74211728 MS.gene016843:CDS 45.0%
AGTGTTGTGAAATGCCGGTA+GGG + chr5.2:74209280-74209299 MS.gene016843:CDS 45.0%
ATTGACGACATGAAGAGGAG+TGG - chr5.2:74208869-74208888 None:intergenic 45.0%
CATTGTCCCTTTCATGGAAG+TGG + chr5.2:74210814-74210833 MS.gene016843:intron 45.0%
CGTATTATCTCCTCCACAGA+TGG + chr5.2:74208824-74208843 MS.gene016843:CDS 45.0%
CTCAGTTGTGACCACAAATG+CGG + chr5.2:74210083-74210102 MS.gene016843:intron 45.0%
CTTCCTATTCACTCGAATCG+CGG + chr5.2:74209142-74209161 MS.gene016843:CDS 45.0%
GATGAACATGGTCTCCAAAG+GGG + chr5.2:74210631-74210650 MS.gene016843:CDS 45.0%
GCATTGTCACTGAAACGTGA+AGG - chr5.2:74211700-74211719 None:intergenic 45.0%
GCCGCAGTTAATTGGATTGA+GGG + chr5.2:74211410-74211429 MS.gene016843:CDS 45.0%
GCTAGGTATTCAGTGTGCTA+TGG + chr5.2:74210556-74210575 MS.gene016843:CDS 45.0%
GGATGAACATGGTCTCCAAA+GGG + chr5.2:74210630-74210649 MS.gene016843:CDS 45.0%
GGGATGCAAAATCACCTCAA+TGG - chr5.2:74211726-74211745 None:intergenic 45.0%
GGTAGATAAACGAAGCGATG+AGG - chr5.2:74208918-74208937 None:intergenic 45.0%
GTATTCAGTGTGCTATGGCT+GGG + chr5.2:74210561-74210580 MS.gene016843:CDS 45.0%
GTTAATTGGATTGAGGGACG+CGG + chr5.2:74211416-74211435 MS.gene016843:CDS 45.0%
TATTCAAATTCCGGTGGGTG+TGG + chr5.2:74209305-74209324 MS.gene016843:CDS 45.0%
TCAATCCAATTAACTGCGGC+AGG - chr5.2:74211410-74211429 None:intergenic 45.0%
TCTGCTTGCTTGAACATGCT+TGG + chr5.2:74211863-74211882 MS.gene016843:CDS 45.0%
TGATGTCTGCCATTGCTTCA+GGG + chr5.2:74211978-74211997 MS.gene016843:CDS 45.0%
TGCCGCAGTTAATTGGATTG+AGG + chr5.2:74211409-74211428 MS.gene016843:CDS 45.0%
TTAATTGGATTGAGGGACGC+GGG + chr5.2:74211417-74211436 MS.gene016843:CDS 45.0%
TTCCAATGGCGACTACAGAA+GGG + chr5.2:74209364-74209383 MS.gene016843:CDS 45.0%
! ATTTGAGACGGTGGGAATGA+GGG - chr5.2:74208708-74208727 None:intergenic 45.0%
! GAAGAAGAGCGTGAAGAAGA+TGG - chr5.2:74208797-74208816 None:intergenic 45.0%
! GAGCATGTTTAGCTCCACTA+GGG - chr5.2:74211513-74211532 None:intergenic 45.0%
! TGAGCATGTTTAGCTCCACT+AGG - chr5.2:74211514-74211533 None:intergenic 45.0%
!! CTTGAACATGCTTGGTGTGA+AGG + chr5.2:74211871-74211890 MS.gene016843:CDS 45.0%
!! GAAGGTATTGAAGACCAAGG+TGG + chr5.2:74211484-74211503 MS.gene016843:CDS 45.0%
!! TGAAGAAGATGGTGTTGGTG+AGG - chr5.2:74208786-74208805 None:intergenic 45.0%
!!! TCCGCCATTTTTATAGCCAC+AGG + chr5.2:74211602-74211621 MS.gene016843:CDS 45.0%
!! ATACAAAAAATAATAATTTA+TGG + chr5.2:74210480-74210499 MS.gene016843:intron 5.0%
AACTCTCAGGTGGGTACAGT+AGG + chr5.2:74211815-74211834 MS.gene016843:intron 50.0%
AAGAACGTTCTGCACCCCTT+TGG - chr5.2:74210648-74210667 None:intergenic 50.0%
AAGGGATAGCTTGGTTGGGT+TGG + chr5.2:74209860-74209879 MS.gene016843:intron 50.0%
ACACTGAATACCTAGCAGCC+TGG - chr5.2:74210552-74210571 None:intergenic 50.0%
ACGCGCTTCTCATGATGGTT+GGG + chr5.2:74208981-74209000 MS.gene016843:CDS 50.0%
ACTCTCAGGTGGGTACAGTA+GGG + chr5.2:74211816-74211835 MS.gene016843:intron 50.0%
AGCGATGAGGGAAACAATGG+CGG - chr5.2:74208905-74208924 None:intergenic 50.0%
AGGGATAGCTTGGTTGGGTT+GGG + chr5.2:74209861-74209880 MS.gene016843:intron 50.0%
AGGGCAGTGTTGTGAAATGC+CGG + chr5.2:74209275-74209294 MS.gene016843:CDS 50.0%
AGTAGATTTGCCAGGCTGCT+AGG + chr5.2:74210539-74210558 MS.gene016843:CDS 50.0%
ATGTAGTACGGGTGATGCCA+TGG + chr5.2:74210607-74210626 MS.gene016843:CDS 50.0%
CAGTGTTGTGAAATGCCGGT+AGG + chr5.2:74209279-74209298 MS.gene016843:CDS 50.0%
CATGAAGAGGAGTGGAGCTA+CGG - chr5.2:74208861-74208880 None:intergenic 50.0%
CGAAGCGATGAGGGAAACAA+TGG - chr5.2:74208908-74208927 None:intergenic 50.0%
CGCATTTGTGGTCACAACTG+AGG - chr5.2:74210085-74210104 None:intergenic 50.0%
CGCGATTCGAGTGAATAGGA+AGG - chr5.2:74209144-74209163 None:intergenic 50.0%
CTCTTGGCAACCATTGTTGC+TGG + chr5.2:74211929-74211948 MS.gene016843:CDS 50.0%
CTGATGTCTGCCATTGCTTC+AGG + chr5.2:74211977-74211996 MS.gene016843:CDS 50.0%
GAGCGTGAAGAAGATGGTGT+TGG - chr5.2:74208791-74208810 None:intergenic 50.0%
GAGGGGAACGTGATTTGAGA+CGG - chr5.2:74208720-74208739 None:intergenic 50.0%
GGGATGAACATGGTCTCCAA+AGG + chr5.2:74210629-74210648 MS.gene016843:CDS 50.0%
GGTATTCAGTGTGCTATGGC+TGG + chr5.2:74210560-74210579 MS.gene016843:CDS 50.0%
GTGGAGGAGATAATACGCGA+CGG - chr5.2:74208821-74208840 None:intergenic 50.0%
GTTCAGGTGAGGTGAGTTTG+CGG - chr5.2:74209062-74209081 None:intergenic 50.0%
GTTCCAATGGCGACTACAGA+AGG + chr5.2:74209363-74209382 MS.gene016843:CDS 50.0%
TATTCACTCGAATCGCGGCT+GGG + chr5.2:74209147-74209166 MS.gene016843:CDS 50.0%
TCAGGTCGAGTAGATTTGCC+AGG + chr5.2:74210531-74210550 MS.gene016843:intron 50.0%
TGATGCCATGGGGATGAACA+TGG + chr5.2:74210619-74210638 MS.gene016843:CDS 50.0%
TGTAGTACGGGTGATGCCAT+GGG + chr5.2:74210608-74210627 MS.gene016843:CDS 50.0%
TTGAGCTGGATCTTGACCTG+TGG - chr5.2:74211621-74211640 None:intergenic 50.0%
! GACTAGTTGCCCTGAAGCAA+TGG - chr5.2:74211990-74212009 None:intergenic 50.0%
! GATTTGAGACGGTGGGAATG+AGG - chr5.2:74208709-74208728 None:intergenic 50.0%
! GCATCAGAGGCTTTTGGTGA+TGG - chr5.2:74208745-74208764 None:intergenic 50.0%
! GGAACGTGATTTGAGACGGT+GGG - chr5.2:74208716-74208735 None:intergenic 50.0%
!! ATGGTGTTGGTGAGGTAGAG+AGG - chr5.2:74208778-74208797 None:intergenic 50.0%
!! TGGTGTTGGTGAGGTAGAGA+GGG - chr5.2:74208777-74208796 None:intergenic 50.0%
!!! AGGCTTTTGGTGATGGTGGA+GGG - chr5.2:74208738-74208757 None:intergenic 50.0%
!!! GTTGCTGGAGCTGTTTTAGC+TGG + chr5.2:74211944-74211963 MS.gene016843:CDS 50.0%
!!! TCAGAGGCTTTTGGTGATGG+TGG - chr5.2:74208742-74208761 None:intergenic 50.0%
AGCTTCACGACGAATTGCCG+CGG - chr5.2:74209187-74209206 None:intergenic 55.0%
CACCCTTCTGTAGTCGCCAT+TGG - chr5.2:74209369-74209388 None:intergenic 55.0%
CACGCGCTTCTCATGATGGT+TGG + chr5.2:74208980-74208999 MS.gene016843:CDS 55.0%
CAGCAACAGCAGAACCAGCA+AGG - chr5.2:74211541-74211560 None:intergenic 55.0%
CAGCCGCGATTCGAGTGAAT+AGG - chr5.2:74209148-74209167 None:intergenic 55.0%
CTATTCACTCGAATCGCGGC+TGG + chr5.2:74209146-74209165 MS.gene016843:CDS 55.0%
CTCTCAGGTGGGTACAGTAG+GGG + chr5.2:74211817-74211836 MS.gene016843:intron 55.0%
GAGTTTGCGGAGAGGCTGAT+TGG - chr5.2:74209049-74209068 None:intergenic 55.0%
GCAACACGCGCTTCTCATGA+TGG + chr5.2:74208976-74208995 MS.gene016843:CDS 55.0%
GGAAACAATGGCGGCGAGTT+CGG - chr5.2:74208896-74208915 None:intergenic 55.0%
GGAGACCATGTTCATCCCCA+TGG - chr5.2:74210627-74210646 None:intergenic 55.0%
GGATCTTGTCACGCCATCTG+TGG - chr5.2:74208840-74208859 None:intergenic 55.0%
GTAGTACGGGTGATGCCATG+GGG + chr5.2:74210609-74210628 MS.gene016843:CDS 55.0%
TCAAATTCCGGTGGGTGTGG+CGG + chr5.2:74209308-74209327 MS.gene016843:CDS 55.0%
TCTCAGGTGGGTACAGTAGG+GGG + chr5.2:74211818-74211837 MS.gene016843:intron 55.0%
TCTGCTGTTGCTGGCACTCT+TGG + chr5.2:74211548-74211567 MS.gene016843:CDS 55.0%
TCTTGTCACGCCATCTGTGG+AGG - chr5.2:74208837-74208856 None:intergenic 55.0%
TGGTGAGGTAGAGAGGGAGA+GGG - chr5.2:74208771-74208790 None:intergenic 55.0%
TTGGTGAGGTAGAGAGGGAG+AGG - chr5.2:74208772-74208791 None:intergenic 55.0%
TTTGCGGAGAGGCTGATTGG+CGG - chr5.2:74209046-74209065 None:intergenic 55.0%
! GCGGGACCATTGTTGTTGGA+TGG + chr5.2:74209327-74209346 MS.gene016843:CDS 55.0%
! GGGAACGTGATTTGAGACGG+TGG - chr5.2:74208717-74208736 None:intergenic 55.0%
! TGGTGTGAAGGGTGCAAGCA+AGG + chr5.2:74211883-74211902 MS.gene016843:CDS 55.0%
! TGTGAAGGGTGCAAGCAAGG+AGG + chr5.2:74211886-74211905 MS.gene016843:CDS 55.0%
! TGTGGCGGGACCATTGTTGT+TGG + chr5.2:74209323-74209342 MS.gene016843:CDS 55.0%
!! ATTGGCGGTGGTGTTGGTAG+CGG - chr5.2:74209031-74209050 None:intergenic 55.0%
!! CTTGCTGGTTCTGCTGTTGC+TGG + chr5.2:74211539-74211558 MS.gene016843:CDS 55.0%
!! GGCGACTACAGAAGGGTGTT+TGG + chr5.2:74209371-74209390 MS.gene016843:CDS 55.0%
!! GTTGGTAGCGGTGGTGATGA+CGG - chr5.2:74209019-74209038 None:intergenic 55.0%
!! TGGTGATGACGGTGTCATCG+AGG - chr5.2:74209008-74209027 None:intergenic 55.0%
!!! GAGGCTTTTGGTGATGGTGG+AGG - chr5.2:74208739-74208758 None:intergenic 55.0%
!!! GGCTTTTGGTGATGGTGGAG+GGG - chr5.2:74208737-74208756 None:intergenic 55.0%
!!! GGGAGAGCATCAGAGGCTTT+TGG - chr5.2:74208751-74208770 None:intergenic 55.0%
AGGCTGATTGGCGGTGGTGT+TGG - chr5.2:74209037-74209056 None:intergenic 60.0%
AGGTGGGTACAGTAGGGGGT+GGG + chr5.2:74211822-74211841 MS.gene016843:intron 60.0%
CAAATTCCGGTGGGTGTGGC+GGG + chr5.2:74209309-74209328 MS.gene016843:CDS 60.0%
GAGACGGTGGGAATGAGGGT+TGG - chr5.2:74208704-74208723 None:intergenic 60.0%
GCTGTTGCTGGCACTCTTGG+CGG + chr5.2:74211551-74211570 MS.gene016843:CDS 60.0%
GGGAGATTGTTTCCGAGCCG+CGG + chr5.2:74209167-74209186 MS.gene016843:CDS 60.0%
GGTGAGGTGAGTTTGCGGAG+AGG - chr5.2:74209057-74209076 None:intergenic 60.0%
GGTGCAAGCAAGGAGGAACC+AGG + chr5.2:74211893-74211912 MS.gene016843:CDS 60.0%
GGTGGTGACTTCGAGAGCAG+TGG - chr5.2:74211124-74211143 None:intergenic 60.0%
!! AGGGAGAGGGAGAGCATCAG+AGG - chr5.2:74208758-74208777 None:intergenic 60.0%
!! GGAATGAGGGTTGGTCGCGA+CGG - chr5.2:74208695-74208714 None:intergenic 60.0%
AATGGTCCCGCCACACCCAC+CGG - chr5.2:74209318-74209337 None:intergenic 65.0%
CACGACGAATTGCCGCGGCT+CGG - chr5.2:74209182-74209201 None:intergenic 65.0%
CAGGTGGGTACAGTAGGGGG+TGG + chr5.2:74211821-74211840 MS.gene016843:intron 65.0%
CTCCACTAGGGCAGCCACCT+TGG - chr5.2:74211501-74211520 None:intergenic 65.0%
GACCAAGGTGGCTGCCCTAG+TGG + chr5.2:74211496-74211515 MS.gene016843:CDS 65.0%
GCGGAGAGGCTGATTGGCGG+TGG - chr5.2:74209043-74209062 None:intergenic 70.0%
!! ACGGCGCCGGTGGTGGTTTG+CGG - chr5.2:74208676-74208695 None:intergenic 70.0%
!! GGCGGTGGTGTTGGTAGCGG+TGG - chr5.2:74209028-74209047 None:intergenic 70.0%
CGGCCGCCGCAAACCACCAC+CGG + chr5.2:74208667-74208686 MS.gene016843:CDS 75.0%
TTTGCGGCGGCCGGCGATGG+AGG - chr5.2:74208660-74208679 None:intergenic 75.0%
! CGGTGGTGGTTTGCGGCGGC+CGG - chr5.2:74208669-74208688 None:intergenic 75.0%
! GCGCCGGTGGTGGTTTGCGG+CGG - chr5.2:74208673-74208692 None:intergenic 75.0%
! TGGTTTGCGGCGGCCGGCGA+TGG - chr5.2:74208663-74208682 None:intergenic 75.0%
!! AGGGTTGGTCGCGACGGCGC+CGG - chr5.2:74208689-74208708 None:intergenic 75.0%
!! GTTGGTCGCGACGGCGCCGG+TGG - chr5.2:74208686-74208705 None:intergenic 80.0%
!!! GGTCGCGACGGCGCCGGTGG+TGG - chr5.2:74208683-74208702 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 74208652 74212066 74208652 ID=MS.gene016843
chr5.2 mRNA 74208652 74212066 74208652 ID=MS.gene016843.t1;Parent=MS.gene016843
chr5.2 exon 74208652 74209563 74208652 ID=MS.gene016843.t1.exon1;Parent=MS.gene016843.t1
chr5.2 CDS 74208652 74209563 74208652 ID=cds.MS.gene016843.t1;Parent=MS.gene016843.t1
chr5.2 exon 74209936 74209982 74209936 ID=MS.gene016843.t1.exon2;Parent=MS.gene016843.t1
chr5.2 CDS 74209936 74209982 74209936 ID=cds.MS.gene016843.t1;Parent=MS.gene016843.t1
chr5.2 exon 74210535 74210716 74210535 ID=MS.gene016843.t1.exon3;Parent=MS.gene016843.t1
chr5.2 CDS 74210535 74210716 74210535 ID=cds.MS.gene016843.t1;Parent=MS.gene016843.t1
chr5.2 exon 74211384 74211730 74211384 ID=MS.gene016843.t1.exon4;Parent=MS.gene016843.t1
chr5.2 CDS 74211384 74211730 74211384 ID=cds.MS.gene016843.t1;Parent=MS.gene016843.t1
chr5.2 exon 74211824 74212066 74211824 ID=MS.gene016843.t1.exon5;Parent=MS.gene016843.t1
chr5.2 CDS 74211824 74212066 74211824 ID=cds.MS.gene016843.t1;Parent=MS.gene016843.t1
Gene Sequence

>MS.gene016843

ATGGACCTCCATCGCCGGCCGCCGCAAACCACCACCGGCGCCGTCGCGACCAACCCTCATTCCCACCGTCTCAAATCACGTTCCCCTCCACCATCACCAAAAGCCTCTGATGCTCTCCCTCTCCCTCTCTACCTCACCAACACCATCTTCTTCACGCTCTTCTTCTCCGTCGCGTATTATCTCCTCCACAGATGGCGTGACAAGATCCGTAGCTCCACTCCTCTTCATGTCGTCAATTTCACCGAACTCGCCGCCATTGTTTCCCTCATCGCTTCGTTTATCTACCTTCTAGGTTTCTTCGGTATTGATTTCGTTCAATCGTTTGCAACACGCGCTTCTCATGATGGTTGGGACCTCGATGACACCGTCATCACCACCGCTACCAACACCACCGCCAATCAGCCTCTCCGCAAACTCACCTCACCTGAACCCTCATTATGTTCAGAGGAAGATAATTCAATTGTAAACTCCGTTGTGGAAGGTAGCATACCTTCCTATTCACTCGAATCGCGGCTGGGAGATTGTTTCCGAGCCGCGGCAATTCGTCGTGAAGCTTTACAACGAACATCAGGAAGATCTTTGGAAGGTTTACCATTAGAAGGATTTGATTACGAAGCAATTTTAGGGCAGTGTTGTGAAATGCCGGTAGGGTATATTCAAATTCCGGTGGGTGTGGCGGGACCATTGTTGTTGGATGGATTTGAATATACGGTTCCAATGGCGACTACAGAAGGGTGTTTGGTTGCTAGTACAAATAGAGGGTGTAAAGCTATACATGCTTCTGGTGGTGCTGAGAGTGTTGTTTTGAGAGATGCTATGTCTAGAGCACCTGTTGTTAGATTTTCTACCGCTAAAAGAGCTTCTCAGTTGAAGTTTTTCTTGGAGGATCCTTTGAATTCTGATACATTAGCTGTTGTTTTCAACAGGTTTGCTTCTTTTTTTTTGAATTTTGATTTTGAATGGTTTTGTATTTGGTGAAATGAATATAGTTCTGTTTGGATTATCGGCTTAATTAAGTGTTTATGTATGAATGATTAATAATATAACTATTTTTATATACCTTATAAGTTGTTTTCATAAGTTTTATCAGAGAATTTGTCAAGAGAATTTGTCATAAGTTGTTTTCATAAGTTCTTCTAAACAGTGTTAATGTTGGTTGATTAGCACAAATAAGGTAATTCAGATTGGCTCTTATTATTGGTATATGAAAGGGATAGCTTGGTTGGGTTGGGTTTTACTGTCATGTCATTTTCATTGAATTATGAAAATCTTGCATGTGGGAAGATAGCCAATGTTTCTAATAGTGAAGTGAAATTATTGGTATTTGAAAGGTATTGGTTAGTTTCTAAAAACATATGTACTGACAATCAATGTTTTAAATTTTTTGTCGCGTAGCGATGTATTGTGAAGAGTTGTGGTTAGATATGCAGCCTCAGTTGTGACCACAAATGCGGAGATATTTAAAGCATTTGAAAAAGTAAAAGTGTTGTTTTTAACTTGTTGTCGCGAATTGGGATTTGAATTCCATAAAGATTCATTTCCCGCGTTCAGATATATTGCAAAGAATCATAGTCGAATATGAAACCTCAGTTACAACTACAACATGGAGACAGTAAAAACTTTATGTCGTGGCATAAATTTGCAGACATTTTCTCTTAATTGATCTCATTTATTTTGTTTGTTGATTCGTTTTTTTTCTTCTTTTCATTTTACAAAGTTTGACACCATTTTGTTTTTCGATGTTTAAATTTATTATTTGTTTTTGTAAATTTGAGCAAAGAAAATAGAGGATTGGATTTTGAAATTGAATATGGTTTATTGGGTTTTTATACAAAAAATAATAATTTATGGTGAGTTTTGGTGTTTGTTTGCTGTGTTTTCAGGTCGAGTAGATTTGCCAGGCTGCTAGGTATTCAGTGTGCTATGGCTGGGAAGAATCTTTATATGAGATTTACATGTAGTACGGGTGATGCCATGGGGATGAACATGGTCTCCAAAGGGGTGCAGAACGTTCTTGATTTCCTTCGAAATGATTTCCCTGACATGGATGTTATTGGCATATCAGGTAATTTCCGTTGCCATTTGGATGGAATTTCCTTGTTTCTTCTCTAGTTAAGCCTGCATGATGTCATGAATACCATTTGTTTTGCTTGTGCTTCACACATTGTCCCTTTCATGGAAGTGGTCCAATTACATTATTTACACTTGTTTCTTTCATGAAAGTGGTCCAATTACATTAACTTATCTTTTCCATTGTCATCCTTGATTTTATCCATCTTTTATTGTTATAGGTGTTATATGATTTGAACTGGTAATTTATTCCATAAATTCAATACATTGGTGTTATTGTAGTTTCACTTATGAATATGAAATTGTCAAATTGAATTCTCATACGAGCTTGATTTATTTGTTTTATCTGCTTTTTGAGAAAATGGTTATGCAAAAGCATGGTGTGAAAATTGAACTTTGCCACTGCTCTCGAAGTCACCACCAATTTATTTACATTTCTAGTTTGATTAGATTCCTAATGTGTTCTAGCATTTATTTCTTTTGTCGTGTCAAATCCTGTTTGGTATTTAGTCTTCCAGTTAACTTGCATCTTTTGAATGTGTCACTATCTTAATCTCCTTATTTGGTTATTTGATTCCTGTAATCTATGCATGCTAAAATAATTTTAATGGGAACATTGGACCAAAAATGTGATGGTTGTTTGTACTGACTTGATTCTTTAGGAAATTATTGCTCGGATAAGAAACCTGCCGCAGTTAATTGGATTGAGGGACGCGGGAAATCAGTTGTTTGTGAAGCAACTATCAAAGAAGATGTGGTGAAGAAGGTATTGAAGACCAAGGTGGCTGCCCTAGTGGAGCTAAACATGCTCAAAAACCTTGCTGGTTCTGCTGTTGCTGGCACTCTTGGCGGATTCAATGCCCATGCTAGTAACATTGTTTCCGCCATTTTTATAGCCACAGGTCAAGATCCAGCTCAAAATGTTGAAAGTTCCCATTGCATAACAATGATGGAAGCCGTAAATGATGGGAGAGACCTTCACGTTTCAGTGACAATGCCATCCATTGAGGTGATTTTGCATCCCTACAGTTTATTTTAATCTTAAATTTTTCCAATTTAATAGCTCTAGGCCTAAGTTTTATATGTTTTTTTGAACTCTCAGGTGGGTACAGTAGGGGGTGGGACGCAACTTGCATCTCAATCTGCTTGCTTGAACATGCTTGGTGTGAAGGGTGCAAGCAAGGAGGAACCAGGATCAAACTCGAGACTCTTGGCAACCATTGTTGCTGGAGCTGTTTTAGCTGGCGAGTTGTCTCTGATGTCTGCCATTGCTTCAGGGCAACTAGTCAACAGCCACATGAAATACAACAGATCATGCAAAGATGTAACTAAAATCTCATCTTGA
Protein sequence

>MS.gene016843.t1

MDLHRRPPQTTTGAVATNPHSHRLKSRSPPPSPKASDALPLPLYLTNTIFFTLFFSVAYYLLHRWRDKIRSSTPLHVVNFTELAAIVSLIASFIYLLGFFGIDFVQSFATRASHDGWDLDDTVITTATNTTANQPLRKLTSPEPSLCSEEDNSIVNSVVEGSIPSYSLESRLGDCFRAAAIRREALQRTSGRSLEGLPLEGFDYEAILGQCCEMPVGYIQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIHASGGAESVVLRDAMSRAPVVRFSTAKRASQLKFFLEDPLNSDTLAIANVSNSEVKLLVFERSSRFARLLGIQCAMAGKNLYMRFTCSTGDAMGMNMVSKGVQNVLDFLRNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEATIKEDVVKKVLKTKVAALVELNMLKNLAGSAVAGTLGGFNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAVNDGRDLHVSVTMPSIEVGTVGGGTQLASQSACLNMLGVKGASKEEPGSNSRLLATIVAGAVLAGELSLMSAIASGQLVNSHMKYNRSCKDVTKISS