Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02757.t1 | KEH37077.1 | 98.5 | 198 | 3 | 0 | 1 | 198 | 13 | 210 | 1.80E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02757.t1 | O48916 | 74.2 | 198 | 51 | 0 | 1 | 198 | 1 | 198 | 1.1e-88 | 327.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02757.t1 | G7IML5 | 98.5 | 198 | 3 | 0 | 1 | 198 | 1 | 198 | 1.3e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032882 | MS.gene02757 | PPI |
| MS.gene47806 | MS.gene02757 | PPI |
| MS.gene051072 | MS.gene02757 | PPI |
| MS.gene55207 | MS.gene02757 | PPI |
| MS.gene056094 | MS.gene02757 | PPI |
| MS.gene76506 | MS.gene02757 | PPI |
| MS.gene02757 | MS.gene070560 | PPI |
| MS.gene02757 | MS.gene016843 | PPI |
| MS.gene39573 | MS.gene02757 | PPI |
| MS.gene005292 | MS.gene02757 | PPI |
| MS.gene37846 | MS.gene02757 | PPI |
| MS.gene85122 | MS.gene02757 | PPI |
| MS.gene77418 | MS.gene02757 | PPI |
| MS.gene47530 | MS.gene02757 | PPI |
| MS.gene44169 | MS.gene02757 | PPI |
| MS.gene99407 | MS.gene02757 | PPI |
| MS.gene26583 | MS.gene02757 | PPI |
| MS.gene39838 | MS.gene02757 | PPI |
| MS.gene44168 | MS.gene02757 | PPI |
| MS.gene36325 | MS.gene02757 | PPI |
| MS.gene40807 | MS.gene02757 | PPI |
| MS.gene008714 | MS.gene02757 | PPI |
| MS.gene056096 | MS.gene02757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02757.t1 | MTR_2g031370 | 98.485 | 198 | 3 | 0 | 1 | 198 | 13 | 210 | 1.61e-145 | 404 |
| MS.gene02757.t1 | MTR_2g031370 | 98.485 | 198 | 3 | 0 | 1 | 198 | 1 | 198 | 5.54e-145 | 403 |
| MS.gene02757.t1 | MTR_4g094525 | 67.677 | 198 | 64 | 0 | 1 | 198 | 1 | 198 | 2.21e-92 | 270 |
| MS.gene02757.t1 | MTR_4g094525 | 57.071 | 198 | 54 | 1 | 1 | 198 | 1 | 167 | 1.87e-67 | 205 |
| MS.gene02757.t1 | MTR_4g094522 | 69.565 | 115 | 35 | 0 | 1 | 115 | 1 | 115 | 4.94e-48 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02757.t1 | AT2G34770 | 74.242 | 198 | 51 | 0 | 1 | 198 | 1 | 198 | 2.55e-109 | 313 |
| MS.gene02757.t1 | AT4G20870 | 68.687 | 198 | 62 | 0 | 1 | 198 | 1 | 198 | 8.82e-100 | 288 |
| MS.gene02757.t1 | AT4G20870 | 68.687 | 198 | 62 | 0 | 1 | 198 | 1 | 198 | 8.82e-100 | 288 |
Find 63 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTGGCGGTGGCTTAC+TGG | 0.121516 | 2.3:-59130511 | MS.gene02757:CDS |
| TCAACTACTCCTGCTTTATT+TGG | 0.215512 | 2.3:-59130525 | MS.gene02757:CDS |
| TTTCGGGGATGTTCAGTCTT+TGG | 0.281707 | 2.3:+59130441 | None:intergenic |
| GGTGGGCAATACCAGTTATT+TGG | 0.282521 | 2.3:-59132150 | MS.gene02757:CDS |
| GACCATGGTGCAAGTAATAA+TGG | 0.337316 | 2.3:+59130466 | None:intergenic |
| AACAGCTATATTATTGTTCC+CGG | 0.368539 | 2.3:-59131532 | MS.gene02757:intron |
| GTTCTATAGGTTGGACATCT+TGG | 0.372108 | 2.3:-59132866 | MS.gene02757:intron |
| ATAGCTCTGATGGTGGTTCT+TGG | 0.379060 | 2.3:-59132067 | MS.gene02757:CDS |
| TGTATATAACTCTATACAAA+TGG | 0.396707 | 2.3:-59132107 | MS.gene02757:CDS |
| ACAACTGGAAGCCAAATAAC+TGG | 0.431941 | 2.3:+59132139 | None:intergenic |
| TATACAAACCAACATACAAC+TGG | 0.433560 | 2.3:+59132124 | None:intergenic |
| TTATTTGGCGGTGGCTTACT+GGG | 0.435203 | 2.3:-59130510 | MS.gene02757:CDS |
| AACCATCCATGGGGTGTTTG+TGG | 0.448233 | 2.3:+59131580 | None:intergenic |
| ACTACTCCTGCTTTATTTGG+CGG | 0.450026 | 2.3:-59130522 | MS.gene02757:CDS |
| TCCCCGTTTCTTTCAAAATG+AGG | 0.458220 | 2.3:-59132795 | MS.gene02757:CDS |
| AGTCCTTGACCCTCACTGTC+TGG | 0.464818 | 2.3:-59132171 | MS.gene02757:CDS |
| TCAAATCAACTACAAAGTCC+TGG | 0.474615 | 2.3:+59133080 | None:intergenic |
| GGACCTTCCTTGCTAACAAT+GGG | 0.475219 | 2.3:+59132815 | None:intergenic |
| TTTGGCTTCCAGTTGTATGT+TGG | 0.477885 | 2.3:-59132132 | MS.gene02757:CDS |
| AACAAGTCTCAAACCATCCA+TGG | 0.483587 | 2.3:+59131569 | None:intergenic |
| CTGTCCTCATATAGCTCTGA+TGG | 0.487299 | 2.3:-59132077 | MS.gene02757:CDS |
| ACATTAAAACAAAGACCTAC+TGG | 0.502397 | 2.3:-59131994 | MS.gene02757:intron |
| CAGCCCATTGTTAGCAAGGA+AGG | 0.502882 | 2.3:-59132818 | MS.gene02757:CDS |
| CCTTGACCCTCACTGTCTGG+TGG | 0.505883 | 2.3:-59132168 | MS.gene02757:CDS |
| CAGCACCAAGATGGTTGCCC+AGG | 0.518070 | 2.3:-59133098 | None:intergenic |
| AAGCCTGTACCTGGAAAACA+AGG | 0.518297 | 2.3:+59133050 | None:intergenic |
| AATATAGCTGTTGCAGTAGG+AGG | 0.519735 | 2.3:+59131543 | None:intergenic |
| GGGACCTTCCTTGCTAACAA+TGG | 0.525396 | 2.3:+59132814 | None:intergenic |
| GTATATAACTCTATACAAAT+GGG | 0.525508 | 2.3:-59132106 | MS.gene02757:CDS |
| GCCATGTAGAAGATAATGTA+TGG | 0.525715 | 2.3:+59131608 | None:intergenic |
| AGCAGGAGTAGTTGAAGGGG+TGG | 0.532131 | 2.3:+59130533 | None:intergenic |
| ACCATGGTGCAAGTAATAAT+GGG | 0.532977 | 2.3:+59130467 | None:intergenic |
| ACTCCTGCTTTATTTGGCGG+TGG | 0.533512 | 2.3:-59130519 | MS.gene02757:CDS |
| CTTGACCCTCACTGTCTGGT+GGG | 0.548253 | 2.3:-59132167 | MS.gene02757:CDS |
| AATAAAGCAGGAGTAGTTGA+AGG | 0.548583 | 2.3:+59130528 | None:intergenic |
| CAAATCAACTACAAAGTCCT+GGG | 0.550444 | 2.3:+59133081 | None:intergenic |
| CTTTCAAAATGAGGTTCTAG+AGG | 0.555614 | 2.3:-59132786 | MS.gene02757:intron |
| TTGGTGAAGCTTATGAAGAG+TGG | 0.555652 | 2.3:-59132847 | MS.gene02757:CDS |
| AAGCCACCGCCAAATAAAGC+AGG | 0.556526 | 2.3:+59130516 | None:intergenic |
| TCATCAGCCCATTGTTAGCA+AGG | 0.566774 | 2.3:-59132822 | MS.gene02757:CDS |
| GTTCAGTCTTTGGCTGACCA+TGG | 0.566911 | 2.3:+59130451 | None:intergenic |
| TGGTGAAGCTTATGAAGAGT+GGG | 0.567564 | 2.3:-59132846 | MS.gene02757:CDS |
| ACAAGTCTCAAACCATCCAT+GGG | 0.570404 | 2.3:+59131570 | None:intergenic |
| CACCACAAACACCCCATGGA+TGG | 0.571556 | 2.3:-59131582 | MS.gene02757:CDS |
| ACCACCATCAGAGCTATATG+AGG | 0.581427 | 2.3:+59132073 | None:intergenic |
| AATAATATAGCTGTTGCAGT+AGG | 0.598883 | 2.3:+59131540 | None:intergenic |
| CTGCCACCACAAACACCCCA+TGG | 0.603098 | 2.3:-59131586 | MS.gene02757:CDS |
| ATATAGCTGTTGCAGTAGGA+GGG | 0.606939 | 2.3:+59131544 | None:intergenic |
| ATAAAGCAGGAGTAGTTGAA+GGG | 0.615938 | 2.3:+59130529 | None:intergenic |
| ACCATACATTATCTTCTACA+TGG | 0.618370 | 2.3:-59131609 | MS.gene02757:CDS |
| GCCTGTACCTGGAAAACAAG+GGG | 0.619950 | 2.3:+59133052 | None:intergenic |
| ACCCATTATTACTTGCACCA+TGG | 0.623569 | 2.3:-59130468 | MS.gene02757:CDS |
| TGAACATCCCCGAAACCTGA+AGG | 0.626671 | 2.3:-59130433 | None:intergenic |
| CATCCATGGGGTGTTTGTGG+TGG | 0.632413 | 2.3:+59131583 | None:intergenic |
| CGGACTCCAGTTCTGGAACG+TGG | 0.633072 | 2.3:-59130568 | MS.gene02757:intron |
| TCCTCATATAGCTCTGATGG+TGG | 0.637299 | 2.3:-59132074 | MS.gene02757:CDS |
| CCACCAGACAGTGAGGGTCA+AGG | 0.641225 | 2.3:+59132168 | None:intergenic |
| GAGCTATATGAGGACAGCTG+AGG | 0.663833 | 2.3:+59132083 | None:intergenic |
| TATTGCCCACCAGACAGTGA+GGG | 0.672832 | 2.3:+59132162 | None:intergenic |
| TAAAGCAGGAGTAGTTGAAG+GGG | 0.675171 | 2.3:+59130530 | None:intergenic |
| GTATTGCCCACCAGACAGTG+AGG | 0.692936 | 2.3:+59132161 | None:intergenic |
| AGCCTGTACCTGGAAAACAA+GGG | 0.717048 | 2.3:+59133051 | None:intergenic |
| CAAGTCTCAAACCATCCATG+GGG | 0.739606 | 2.3:+59131571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAACAAATTTAAAAA+AGG | + | chr2.3:59132320-59132339 | None:intergenic | 10.0% |
| !! | CTTCAAATAATAATAATTTA+AGG | - | chr2.3:59132659-59132678 | MS.gene02757:intron | 10.0% |
| !!! | TTAATTTTATGTGTAAATTT+AGG | - | chr2.3:59130564-59130583 | MS.gene02757:intron | 10.0% |
| !!! | TTTATAAAAAAACAAGTTTT+TGG | - | chr2.3:59130870-59130889 | MS.gene02757:intron | 10.0% |
| !!! | TTTTTTAAATTTGTTCAATT+TGG | - | chr2.3:59132319-59132338 | MS.gene02757:intron | 10.0% |
| !! | CATTGTTTAAAAACATAATT+TGG | - | chr2.3:59132499-59132518 | MS.gene02757:intron | 15.0% |
| !! | TAATGTGGTTAATTATTAAA+AGG | + | chr2.3:59131252-59131271 | None:intergenic | 15.0% |
| !!! | AATTTGTATTTAATTTCATG+TGG | - | chr2.3:59132623-59132642 | MS.gene02757:intron | 15.0% |
| !!! | ACAAATTTTTAATGTTCTAT+AGG | - | chr2.3:59130643-59130662 | MS.gene02757:intron | 15.0% |
| !!! | ATTTGTATTTAATTTCATGT+GGG | - | chr2.3:59132624-59132643 | MS.gene02757:intron | 15.0% |
| !!! | ATTTTTCTTATTATGACAAA+TGG | - | chr2.3:59132425-59132444 | MS.gene02757:intron | 15.0% |
| !!! | CAAATTATGTTTTTAAACAA+TGG | + | chr2.3:59132501-59132520 | None:intergenic | 15.0% |
| !!! | CAATAAAGTATTTGAAAATT+CGG | + | chr2.3:59132041-59132060 | None:intergenic | 15.0% |
| !!! | TATTTGTTTTTAAAGTTGAA+TGG | - | chr2.3:59132566-59132585 | MS.gene02757:intron | 15.0% |
| !!! | TTTCTAGTTATATAACTTTT+GGG | - | chr2.3:59131162-59131181 | MS.gene02757:intron | 15.0% |
| !!! | TTTTCTAGTTATATAACTTT+TGG | - | chr2.3:59131161-59131180 | MS.gene02757:intron | 15.0% |
| !! | AAAAAAACTAATTACTCTGT+TGG | + | chr2.3:59132132-59132151 | None:intergenic | 20.0% |
| !! | ACTTAAATAGTAAGATTAGA+TGG | - | chr2.3:59132450-59132469 | MS.gene02757:intron | 20.0% |
| !! | ATATTGACATATCTATATTG+AGG | + | chr2.3:59132862-59132881 | None:intergenic | 20.0% |
| !! | CAATATAGATATGTCAATAT+TGG | - | chr2.3:59132862-59132881 | MS.gene02757:intron | 20.0% |
| !! | GTATATAACTCTATACAAAT+GGG | - | chr2.3:59131416-59131435 | MS.gene02757:intron | 20.0% |
| !! | GTTTAAAAACATAATTTGGA+AGG | - | chr2.3:59132503-59132522 | MS.gene02757:intron | 20.0% |
| !! | TGTATATAACTCTATACAAA+TGG | - | chr2.3:59131415-59131434 | MS.gene02757:intron | 20.0% |
| !!! | AACAAATAAATTGTTGTTTC+TGG | - | chr2.3:59132718-59132737 | MS.gene02757:intron | 20.0% |
| !!! | AGATAGCGAAATAATTTTTT+CGG | + | chr2.3:59130962-59130981 | None:intergenic | 20.0% |
| !!! | ATTTGATGAAAATTTGTTGT+AGG | + | chr2.3:59132379-59132398 | None:intergenic | 20.0% |
| !!! | ATTTTATAACCTTCTTTGAT+AGG | - | chr2.3:59132684-59132703 | MS.gene02757:intron | 20.0% |
| !!! | ATTTTTAATGTTCTATAGGT+TGG | - | chr2.3:59130647-59130666 | MS.gene02757:intron | 20.0% |
| !!! | CAACTTTAAAAACAAATATC+CGG | + | chr2.3:59132564-59132583 | None:intergenic | 20.0% |
| !!! | CATGTATTTTATTACGATAA+TGG | + | chr2.3:59131644-59131663 | None:intergenic | 20.0% |
| !!! | CGAATTTTCAAATACTTTAT+TGG | - | chr2.3:59132039-59132058 | MS.gene02757:CDS | 20.0% |
| !!! | TAAGTTGATTTAAGAAATGT+TGG | - | chr2.3:59131597-59131616 | MS.gene02757:CDS | 20.0% |
| !!! | TACATAACATTTGAAATCTA+AGG | + | chr2.3:59130539-59130558 | None:intergenic | 20.0% |
| !!! | TTTTAATGTGGAAAAGAAAA+CGG | + | chr2.3:59131517-59131536 | None:intergenic | 20.0% |
| !!! | TTTTTATCATGAATTCTTCT+TGG | - | chr2.3:59132089-59132108 | MS.gene02757:CDS | 20.0% |
| !!! | TTTTTGAAAGAGGATTTTTA+CGG | + | chr2.3:59130501-59130520 | None:intergenic | 20.0% |
| ! | AAAATTCCATGAAGTAATGT+TGG | - | chr2.3:59132917-59132936 | MS.gene02757:intron | 25.0% |
| ! | AAAGTTGAATGGTATAAGAA+TGG | - | chr2.3:59132577-59132596 | MS.gene02757:intron | 25.0% |
| ! | ATAAATCCAATATCGTTAAC+TGG | + | chr2.3:59130855-59130874 | None:intergenic | 25.0% |
| ! | ATATGGCAAAAAATAGATAC+CGG | + | chr2.3:59132012-59132031 | None:intergenic | 25.0% |
| ! | CACATGAACAATATAAGATT+AGG | + | chr2.3:59131113-59131132 | None:intergenic | 25.0% |
| ! | TATCGTAATAAAATACATGC+CGG | - | chr2.3:59131645-59131664 | MS.gene02757:intron | 25.0% |
| ! | TGAAAATTCGGCATATAATA+TGG | + | chr2.3:59132029-59132048 | None:intergenic | 25.0% |
| ! | TGTCTCACTATATAAAAAGT+GGG | - | chr2.3:59131687-59131706 | MS.gene02757:intron | 25.0% |
| ! | TTCATCAAATTACTCCTTTA+AGG | - | chr2.3:59132389-59132408 | MS.gene02757:intron | 25.0% |
| !!! | CATTTAACCAAAAAGCATTA+CGG | + | chr2.3:59131877-59131896 | None:intergenic | 25.0% |
| !!! | GTTATATAACTTTTGGGTAA+AGG | - | chr2.3:59131168-59131187 | MS.gene02757:intron | 25.0% |
| !!! | TTTGGTTAAATGTTGCTTTA+GGG | - | chr2.3:59131885-59131904 | MS.gene02757:intron | 25.0% |
| !!! | TTTTGAAAGAGGATTTTTAC+GGG | + | chr2.3:59130500-59130519 | None:intergenic | 25.0% |
| !!! | TTTTGGTTAAATGTTGCTTT+AGG | - | chr2.3:59131884-59131903 | MS.gene02757:intron | 25.0% |
| AAAACACCAACATTACTTCA+TGG | + | chr2.3:59132926-59132945 | None:intergenic | 30.0% | |
| AACAGCTATATTATTGTTCC+CGG | - | chr2.3:59131990-59132009 | MS.gene02757:intron | 30.0% | |
| AACATGCCAATCAAAATCAA+AGG | + | chr2.3:59131197-59131216 | None:intergenic | 30.0% | |
| AAGATTAGGAGTGATTATTC+AGG | + | chr2.3:59131099-59131118 | None:intergenic | 30.0% | |
| AATAATATAGCTGTTGCAGT+AGG | + | chr2.3:59131985-59132004 | None:intergenic | 30.0% | |
| ACATTAAAACAAAGACCTAC+TGG | - | chr2.3:59131528-59131547 | MS.gene02757:intron | 30.0% | |
| ACCATACATTATCTTCTACA+TGG | - | chr2.3:59131913-59131932 | MS.gene02757:intron | 30.0% | |
| AGATTAGGAGTGATTATTCA+GGG | + | chr2.3:59131098-59131117 | None:intergenic | 30.0% | |
| AGTTTCATCATGTGAGAAAA+AGG | + | chr2.3:59131021-59131040 | None:intergenic | 30.0% | |
| ATCTTCATTTGCTTGTAATG+TGG | + | chr2.3:59131267-59131286 | None:intergenic | 30.0% | |
| CAACTTATGATTTCATGCTA+TGG | + | chr2.3:59131584-59131603 | None:intergenic | 30.0% | |
| GAAAAAAAATCGAACCTGAT+TGG | + | chr2.3:59132357-59132376 | None:intergenic | 30.0% | |
| GTGTCTCACTATATAAAAAG+TGG | - | chr2.3:59131686-59131705 | MS.gene02757:intron | 30.0% | |
| GTGTTGTAGTAATACAAAAC+TGG | + | chr2.3:59132773-59132792 | None:intergenic | 30.0% | |
| TATACAAACCAACATACAAC+TGG | + | chr2.3:59131401-59131420 | None:intergenic | 30.0% | |
| TATGGCAAAAAATAGATACC+GGG | + | chr2.3:59132011-59132030 | None:intergenic | 30.0% | |
| TTCATGCTATGGAAACAAAA+GGG | + | chr2.3:59131573-59131592 | None:intergenic | 30.0% | |
| TTGAAATCTAAGGAATGACA+TGG | + | chr2.3:59130529-59130548 | None:intergenic | 30.0% | |
| TTTCATGCTATGGAAACAAA+AGG | + | chr2.3:59131574-59131593 | None:intergenic | 30.0% | |
| ! | AAGTTTACCGTAATGCTTTT+TGG | - | chr2.3:59131867-59131886 | MS.gene02757:intron | 30.0% |
| ! | ACTTGAATTTTCCCTTTTGA+GGG | + | chr2.3:59132156-59132175 | None:intergenic | 30.0% |
| ! | CATGAATTCTTCTTGGTAAT+AGG | - | chr2.3:59132096-59132115 | MS.gene02757:CDS | 30.0% |
| ! | TCTTCTTGGTAATAGGAATT+TGG | - | chr2.3:59132103-59132122 | MS.gene02757:CDS | 30.0% |
| ! | TGGTAAAAATGTTTAGAGCA+AGG | - | chr2.3:59130890-59130909 | MS.gene02757:intron | 30.0% |
| !! | AACCTCATTTTGAAAGAAAC+GGG | + | chr2.3:59130732-59130751 | None:intergenic | 30.0% |
| !! | AGGTTTCCTTTGATTTTGAT+TGG | - | chr2.3:59131188-59131207 | MS.gene02757:intron | 30.0% |
| !! | CATGGAGAAATTTTTGAAAG+AGG | + | chr2.3:59130511-59130530 | None:intergenic | 30.0% |
| !! | GAACCTCATTTTGAAAGAAA+CGG | + | chr2.3:59130733-59130752 | None:intergenic | 30.0% |
| !! | TTGGTTAAATGTTGCTTTAG+GGG | - | chr2.3:59131886-59131905 | MS.gene02757:intron | 30.0% |
| !!! | AAGTACAGCTTTTAAAACCT+AGG | - | chr2.3:59132201-59132220 | MS.gene02757:intron | 30.0% |
| !!! | AGTAGGTCTTTGTTTTAATG+TGG | + | chr2.3:59131529-59131548 | None:intergenic | 30.0% |
| !!! | CACATGTCTACTTTTTATCA+GGG | - | chr2.3:59130984-59131003 | MS.gene02757:intron | 30.0% |
| !!! | TAATTTTTTCGGAGGAACTA+CGG | + | chr2.3:59130951-59130970 | None:intergenic | 30.0% |
| !!! | TAGCGAAATAATTTTTTCGG+AGG | + | chr2.3:59130959-59130978 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTTCCCCTCAAAA+GGG | - | chr2.3:59132142-59132161 | MS.gene02757:CDS | 30.0% |
| !!! | TTAGTTTTTTTCCCCTCAAA+AGG | - | chr2.3:59132141-59132160 | MS.gene02757:CDS | 30.0% |
| AATAAAGCAGGAGTAGTTGA+AGG | + | chr2.3:59132997-59133016 | None:intergenic | 35.0% | |
| ACCATGGTGCAAGTAATAAT+GGG | + | chr2.3:59133058-59133077 | None:intergenic | 35.0% | |
| ATAAAGCAGGAGTAGTTGAA+GGG | + | chr2.3:59132996-59133015 | None:intergenic | 35.0% | |
| ATTTGGAAGGAAAATCACCA+TGG | - | chr2.3:59132516-59132535 | MS.gene02757:intron | 35.0% | |
| CAAATCAACTACAAAGTCCT+GGG | + | chr2.3:59130444-59130463 | None:intergenic | 35.0% | |
| CCACAGGTTTCTAATTAGAT+AGG | + | chr2.3:59132286-59132305 | None:intergenic | 35.0% | |
| CCTATCTAATTAGAAACCTG+TGG | - | chr2.3:59132283-59132302 | MS.gene02757:intron | 35.0% | |
| CCTGATAAAAAGTAGACATG+TGG | + | chr2.3:59130986-59131005 | None:intergenic | 35.0% | |
| GCCATGTAGAAGATAATGTA+TGG | + | chr2.3:59131917-59131936 | None:intergenic | 35.0% | |
| GGAAAATTCAAGTCTCACAT+TGG | - | chr2.3:59132163-59132182 | MS.gene02757:CDS | 35.0% | |
| GTTGAATGGTATAAGAATGG+TGG | - | chr2.3:59132580-59132599 | MS.gene02757:intron | 35.0% | |
| TCAAATCAACTACAAAGTCC+TGG | + | chr2.3:59130445-59130464 | None:intergenic | 35.0% | |
| TCACATGATGAAACTTCACT+GGG | - | chr2.3:59131026-59131045 | MS.gene02757:intron | 35.0% | |
| TCTAACTCAGCCTTACAAAA+CGG | + | chr2.3:59132246-59132265 | None:intergenic | 35.0% | |
| TCTTAAGCTCCTATCAAAGA+AGG | + | chr2.3:59132696-59132715 | None:intergenic | 35.0% | |
| TTCGATGTGAAACTCCTTAA+AGG | + | chr2.3:59132406-59132425 | None:intergenic | 35.0% | |
| TTTGGAAGGAAAATCACCAT+GGG | - | chr2.3:59132517-59132536 | MS.gene02757:intron | 35.0% | |
| ! | CTTGAATTTTCCCTTTTGAG+GGG | + | chr2.3:59132155-59132174 | None:intergenic | 35.0% |
| ! | CTTTCAAAATGAGGTTCTAG+AGG | - | chr2.3:59130736-59130755 | MS.gene02757:intron | 35.0% |
| ! | GACTTGAATTTTCCCTTTTG+AGG | + | chr2.3:59132157-59132176 | None:intergenic | 35.0% |
| ! | TAGATGGATTCTTTGTAACG+TGG | - | chr2.3:59132466-59132485 | MS.gene02757:intron | 35.0% |
| ! | TCAACTACTCCTGCTTTATT+TGG | - | chr2.3:59132997-59133016 | MS.gene02757:intron | 35.0% |
| ! | TGCTTTGAGTAACAGCTTAT+TGG | - | chr2.3:59131828-59131847 | MS.gene02757:intron | 35.0% |
| !! | ACCTCATTTTGAAAGAAACG+GGG | + | chr2.3:59130731-59130750 | None:intergenic | 35.0% |
| !! | CCTTACAAAACGGACTAAAA+AGG | + | chr2.3:59132236-59132255 | None:intergenic | 35.0% |
| !! | CCTTTTTAGTCCGTTTTGTA+AGG | - | chr2.3:59132233-59132252 | MS.gene02757:intron | 35.0% |
| !! | TGTTGGTGTTTTGTATTTCG+CGG | - | chr2.3:59132934-59132953 | MS.gene02757:intron | 35.0% |
| !!! | CCACATGTCTACTTTTTATC+AGG | - | chr2.3:59130983-59131002 | MS.gene02757:intron | 35.0% |
| AAAATCGAACCTGATTGGTG+AGG | + | chr2.3:59132352-59132371 | None:intergenic | 40.0% | |
| AACAAGTCTCAAACCATCCA+TGG | + | chr2.3:59131956-59131975 | None:intergenic | 40.0% | |
| AATATAGCTGTTGCAGTAGG+AGG | + | chr2.3:59131982-59132001 | None:intergenic | 40.0% | |
| ACAACTGGAAGCCAAATAAC+TGG | + | chr2.3:59131386-59131405 | None:intergenic | 40.0% | |
| ACAAGTCTCAAACCATCCAT+GGG | + | chr2.3:59131955-59131974 | None:intergenic | 40.0% | |
| ACCCATTATTACTTGCACCA+TGG | - | chr2.3:59133054-59133073 | MS.gene02757:intron | 40.0% | |
| AGATAGGACAGTCTTTGCTT+TGG | + | chr2.3:59132270-59132289 | None:intergenic | 40.0% | |
| ATATAGCTGTTGCAGTAGGA+GGG | + | chr2.3:59131981-59132000 | None:intergenic | 40.0% | |
| CTCACATGATGAAACTTCAC+TGG | - | chr2.3:59131025-59131044 | MS.gene02757:intron | 40.0% | |
| GACCATGGTGCAAGTAATAA+TGG | + | chr2.3:59133059-59133078 | None:intergenic | 40.0% | |
| GATACAAGACTTAGCTGTTG+TGG | + | chr2.3:59130779-59130798 | None:intergenic | 40.0% | |
| GCTGTTACTCAAAGCAGATA+TGG | + | chr2.3:59131824-59131843 | None:intergenic | 40.0% | |
| GGTAGACCAGTTAACGATAT+TGG | - | chr2.3:59130846-59130865 | MS.gene02757:intron | 40.0% | |
| GTGGGACTTACATGATTTAG+TGG | - | chr2.3:59131705-59131724 | MS.gene02757:intron | 40.0% | |
| TAAAGCAGGAGTAGTTGAAG+GGG | + | chr2.3:59132995-59133014 | None:intergenic | 40.0% | |
| TCCCCGTTTCTTTCAAAATG+AGG | - | chr2.3:59130727-59130746 | MS.gene02757:intron | 40.0% | |
| TGGTGAAGCTTATGAAGAGT+GGG | - | chr2.3:59130676-59130695 | MS.gene02757:intron | 40.0% | |
| TTGGTGAAGCTTATGAAGAG+TGG | - | chr2.3:59130675-59130694 | MS.gene02757:intron | 40.0% | |
| ! | CAGCTAAGTCTTGTATCACT+TGG | - | chr2.3:59130782-59130801 | MS.gene02757:intron | 40.0% |
| ! | GTTCTATAGGTTGGACATCT+TGG | - | chr2.3:59130656-59130675 | MS.gene02757:intron | 40.0% |
| ! | TGGTTCTTGGCATTTTTGTG+TGG | - | chr2.3:59131468-59131487 | MS.gene02757:intron | 40.0% |
| ! | TTTGGCTTCCAGTTGTATGT+TGG | - | chr2.3:59131390-59131409 | MS.gene02757:intron | 40.0% |
| !! | AAAACGGACTAAAAAGGCGA+GGG | + | chr2.3:59132230-59132249 | None:intergenic | 40.0% |
| !! | ACTACTCCTGCTTTATTTGG+CGG | - | chr2.3:59133000-59133019 | MS.gene02757:intron | 40.0% |
| !!! | TGAGACACACCCTGTTTTTA+GGG | + | chr2.3:59131674-59131693 | None:intergenic | 40.0% |
| AAAGGATGACTGACATCCAC+AGG | + | chr2.3:59132302-59132321 | None:intergenic | 45.0% | |
| AAGCCTGTACCTGGAAAACA+AGG | + | chr2.3:59130475-59130494 | None:intergenic | 45.0% | |
| AATCACCATGGGCACAACAT+TGG | - | chr2.3:59132528-59132547 | MS.gene02757:intron | 45.0% | |
| ACCACCATCAGAGCTATATG+AGG | + | chr2.3:59131452-59131471 | None:intergenic | 45.0% | |
| AGCCTGTACCTGGAAAACAA+GGG | + | chr2.3:59130474-59130493 | None:intergenic | 45.0% | |
| CAAGTCTCAAACCATCCATG+GGG | + | chr2.3:59131954-59131973 | None:intergenic | 45.0% | |
| CAGAGAGAGATCTAACCAGT+AGG | + | chr2.3:59131546-59131565 | None:intergenic | 45.0% | |
| GGACCTTCCTTGCTAACAAT+GGG | + | chr2.3:59130710-59130729 | None:intergenic | 45.0% | |
| GGTGGGCAATACCAGTTATT+TGG | - | chr2.3:59131372-59131391 | MS.gene02757:intron | 45.0% | |
| TCATCAGCCCATTGTTAGCA+AGG | - | chr2.3:59130700-59130719 | MS.gene02757:intron | 45.0% | |
| TTATTTGGCGGTGGCTTACT+GGG | - | chr2.3:59133012-59133031 | MS.gene02757:intron | 45.0% | |
| TTTATTTGGCGGTGGCTTAC+TGG | - | chr2.3:59133011-59133030 | MS.gene02757:intron | 45.0% | |
| TTTCGGGGATGTTCAGTCTT+TGG | + | chr2.3:59133084-59133103 | None:intergenic | 45.0% | |
| ! | CAACATTGGCTGTTTGAAGC+CGG | - | chr2.3:59132542-59132561 | MS.gene02757:intron | 45.0% |
| !! | ATAGCTCTGATGGTGGTTCT+TGG | - | chr2.3:59131455-59131474 | MS.gene02757:intron | 45.0% |
| !! | ATGCCGGTTTCCCTAAAAAC+AGG | - | chr2.3:59131661-59131680 | MS.gene02757:intron | 45.0% |
| !! | CAAAACGGACTAAAAAGGCG+AGG | + | chr2.3:59132231-59132250 | None:intergenic | 45.0% |
| !! | CTGTCCTCATATAGCTCTGA+TGG | - | chr2.3:59131445-59131464 | MS.gene02757:intron | 45.0% |
| !! | GTGAGACACACCCTGTTTTT+AGG | + | chr2.3:59131675-59131694 | None:intergenic | 45.0% |
| !! | TCCTCATATAGCTCTGATGG+TGG | - | chr2.3:59131448-59131467 | MS.gene02757:intron | 45.0% |
| !! | TGCCGGTTTCCCTAAAAACA+GGG | - | chr2.3:59131662-59131681 | MS.gene02757:intron | 45.0% |
| !!! | CACCCTGTTTTTAGGGAAAC+CGG | + | chr2.3:59131667-59131686 | None:intergenic | 45.0% |
| !!! | GAATAAGCCCCTTGTTTTCC+AGG | - | chr2.3:59130463-59130482 | MS.gene02757:CDS | 45.0% |
| AACAGCCAATGTTGTGCCCA+TGG | + | chr2.3:59132536-59132555 | None:intergenic | 50.0% | |
| AAGCCACCGCCAAATAAAGC+AGG | + | chr2.3:59133009-59133028 | None:intergenic | 50.0% | |
| CAGCCCATTGTTAGCAAGGA+AGG | - | chr2.3:59130704-59130723 | MS.gene02757:intron | 50.0% | |
| GAGCTATATGAGGACAGCTG+AGG | + | chr2.3:59131442-59131461 | None:intergenic | 50.0% | |
| GCCTGTACCTGGAAAACAAG+GGG | + | chr2.3:59130473-59130492 | None:intergenic | 50.0% | |
| GGGACCTTCCTTGCTAACAA+TGG | + | chr2.3:59130711-59130730 | None:intergenic | 50.0% | |
| GGTTTCTCACCTCACCAATC+AGG | - | chr2.3:59132340-59132359 | MS.gene02757:intron | 50.0% | |
| GTTCAGTCTTTGGCTGACCA+TGG | + | chr2.3:59133074-59133093 | None:intergenic | 50.0% | |
| TAAAAAGGCGAGGGTTGCCT+AGG | + | chr2.3:59132221-59132240 | None:intergenic | 50.0% | |
| TATTGCCCACCAGACAGTGA+GGG | + | chr2.3:59131363-59131382 | None:intergenic | 50.0% | |
| TATTTCGCGGACTCCAGTTC+TGG | - | chr2.3:59132947-59132966 | MS.gene02757:intron | 50.0% | |
| ! | AACCATCCATGGGGTGTTTG+TGG | + | chr2.3:59131945-59131964 | None:intergenic | 50.0% |
| ! | TTACGGGTTAAGCCTGTACC+TGG | + | chr2.3:59130484-59130503 | None:intergenic | 50.0% |
| !! | ACTCCTGCTTTATTTGGCGG+TGG | - | chr2.3:59133003-59133022 | MS.gene02757:intron | 50.0% |
| !! | GTATCACTTGGTGTACGCGT+GGG | - | chr2.3:59130794-59130813 | MS.gene02757:intron | 50.0% |
| !! | TATCACTTGGTGTACGCGTG+GGG | - | chr2.3:59130795-59130814 | MS.gene02757:intron | 50.0% |
| !! | TGTATCACTTGGTGTACGCG+TGG | - | chr2.3:59130793-59130812 | MS.gene02757:intron | 50.0% |
| AGCAGGAGTAGTTGAAGGGG+TGG | + | chr2.3:59132992-59133011 | None:intergenic | 55.0% | |
| AGTCCTTGACCCTCACTGTC+TGG | - | chr2.3:59131351-59131370 | MS.gene02757:intron | 55.0% | |
| CACCACAAACACCCCATGGA+TGG | - | chr2.3:59131940-59131959 | MS.gene02757:intron | 55.0% | |
| CTTGACCCTCACTGTCTGGT+GGG | - | chr2.3:59131355-59131374 | MS.gene02757:intron | 55.0% | |
| GCTTCACCACGTTCCAGAAC+TGG | + | chr2.3:59132963-59132982 | None:intergenic | 55.0% | |
| GGAGATTGCTAGGCTAGGCT+AGG | - | chr2.3:59130820-59130839 | MS.gene02757:intron | 55.0% | |
| GTATTGCCCACCAGACAGTG+AGG | + | chr2.3:59131364-59131383 | None:intergenic | 55.0% | |
| TTGCTAGGCTAGGCTAGGCT+AGG | - | chr2.3:59130825-59130844 | MS.gene02757:intron | 55.0% | |
| ! | CATCCATGGGGTGTTTGTGG+TGG | + | chr2.3:59131942-59131961 | None:intergenic | 55.0% |
| !! | ATCACTTGGTGTACGCGTGG+GGG | - | chr2.3:59130796-59130815 | MS.gene02757:intron | 55.0% |
| !!! | GCCCCTTGTTTTCCAGGTAC+AGG | - | chr2.3:59130469-59130488 | MS.gene02757:CDS | 55.0% |
| CCACCAGACAGTGAGGGTCA+AGG | + | chr2.3:59131357-59131376 | None:intergenic | 60.0% | |
| CCTTGACCCTCACTGTCTGG+TGG | - | chr2.3:59131354-59131373 | MS.gene02757:intron | 60.0% | |
| CTGCCACCACAAACACCCCA+TGG | - | chr2.3:59131936-59131955 | MS.gene02757:intron | 60.0% | |
| GGGGTGGAGATTGCTAGGCT+AGG | - | chr2.3:59130815-59130834 | MS.gene02757:intron | 60.0% | |
| !! | CGGACTCCAGTTCTGGAACG+TGG | - | chr2.3:59132954-59132973 | MS.gene02757:intron | 60.0% |
| GCGTGGGGGTGGAGATTGCT+AGG | - | chr2.3:59130810-59130829 | MS.gene02757:intron | 65.0% | |
| !! | ACTTGGTGTACGCGTGGGGG+TGG | - | chr2.3:59130799-59130818 | MS.gene02757:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 59130434 | 59133110 | 59130434 | ID=MS.gene02757 |
| chr2.3 | mRNA | 59130434 | 59133110 | 59130434 | ID=MS.gene02757.t1;Parent=MS.gene02757 |
| chr2.3 | exon | 59133060 | 59133110 | 59133060 | ID=MS.gene02757.t1.exon1;Parent=MS.gene02757.t1 |
| chr2.3 | CDS | 59133060 | 59133110 | 59133060 | ID=cds.MS.gene02757.t1;Parent=MS.gene02757.t1 |
| chr2.3 | exon | 59132787 | 59132879 | 59132787 | ID=MS.gene02757.t1.exon2;Parent=MS.gene02757.t1 |
| chr2.3 | CDS | 59132787 | 59132879 | 59132787 | ID=cds.MS.gene02757.t1;Parent=MS.gene02757.t1 |
| chr2.3 | exon | 59131995 | 59132191 | 59131995 | ID=MS.gene02757.t1.exon3;Parent=MS.gene02757.t1 |
| chr2.3 | CDS | 59131995 | 59132191 | 59131995 | ID=cds.MS.gene02757.t1;Parent=MS.gene02757.t1 |
| chr2.3 | exon | 59131533 | 59131638 | 59131533 | ID=MS.gene02757.t1.exon4;Parent=MS.gene02757.t1 |
| chr2.3 | CDS | 59131533 | 59131638 | 59131533 | ID=cds.MS.gene02757.t1;Parent=MS.gene02757.t1 |
| chr2.3 | exon | 59130434 | 59130580 | 59130434 | ID=MS.gene02757.t1.exon5;Parent=MS.gene02757.t1 |
| chr2.3 | CDS | 59130434 | 59130580 | 59130434 | ID=cds.MS.gene02757.t1;Parent=MS.gene02757.t1 |
| Gene Sequence |
| Protein sequence |
