Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017039.t1 | XP_003617340.1 | 100 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 9.30E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017039.t1 | Q6PGS5 | 30.1 | 219 | 139 | 7 | 61 | 273 | 38 | 248 | 2.2e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017039.t1 | G7K374 | 100.0 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 6.7e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017039 | MS.gene55688 | PPI |
| MS.gene049621 | MS.gene017039 | PPI |
| MS.gene008402 | MS.gene017039 | PPI |
| MS.gene017039 | MS.gene05093 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017039.t1 | MTR_5g090550 | 100.000 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 0.0 | 561 |
| MS.gene017039.t1 | MTR_3g450410 | 82.117 | 274 | 49 | 0 | 1 | 274 | 1 | 274 | 3.50e-173 | 479 |
| MS.gene017039.t1 | MTR_3g063070 | 49.583 | 240 | 121 | 0 | 35 | 274 | 22 | 261 | 1.98e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017039.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene017039.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene017039.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene017039.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene017039.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene017039.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene017039.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene017039.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene017039.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene017039.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene017039.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
Find 54 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATATACTTCCATTAT+TGG | 0.162120 | 5.1:-72057783 | MS.gene017039:CDS |
| CTGACTTGGGGATGATATTT+TGG | 0.191833 | 5.1:-72056019 | MS.gene017039:CDS |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | 5.1:-72057289 | MS.gene017039:CDS |
| GGTTTCTGTCGGTTACTTCA+TGG | 0.326290 | 5.1:-72056042 | MS.gene017039:CDS |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | 5.1:+72057780 | None:intergenic |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | 5.1:+72057835 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | 5.1:-72054717 | MS.gene017039:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | 5.1:+72055455 | None:intergenic |
| CGGTTACTTCATGGCTGACT+TGG | 0.383147 | 5.1:-72056033 | MS.gene017039:CDS |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | 5.1:-72054718 | MS.gene017039:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | 5.1:-72055607 | MS.gene017039:CDS |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | 5.1:-72054663 | MS.gene017039:CDS |
| TACCATCTCAAGTTGATTCC+AGG | 0.408827 | 5.1:+72055740 | None:intergenic |
| AACAACAATGTCTTTGTACT+TGG | 0.411039 | 5.1:-72057373 | MS.gene017039:CDS |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | 5.1:-72055608 | MS.gene017039:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | 5.1:-72055421 | MS.gene017039:intron |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | 5.1:+72057551 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | 5.1:-72057288 | MS.gene017039:CDS |
| GGTTACTTCATGGCTGACTT+GGG | 0.442312 | 5.1:-72056032 | MS.gene017039:CDS |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | 5.1:-72055758 | MS.gene017039:CDS |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | 5.1:-72057516 | MS.gene017039:intron |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | 5.1:-72055641 | MS.gene017039:intron |
| ACAACTAGTATTTGCCCAAA+GGG | 0.485721 | 5.1:+72054703 | None:intergenic |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | 5.1:+72057829 | None:intergenic |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | 5.1:-72055582 | MS.gene017039:intron |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | 5.1:-72055806 | MS.gene017039:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | 5.1:-72057829 | MS.gene017039:CDS |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | 5.1:+72055808 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | 5.1:-72055586 | MS.gene017039:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | 5.1:+72057534 | None:intergenic |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | 5.1:-72057780 | MS.gene017039:CDS |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | 5.1:+72054673 | None:intergenic |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | 5.1:-72057286 | MS.gene017039:intron |
| CTCCTGGAATCAACTTGAGA+TGG | 0.551944 | 5.1:-72055742 | MS.gene017039:intron |
| GTTACTTCATGGCTGACTTG+GGG | 0.567254 | 5.1:-72056031 | MS.gene017039:CDS |
| ATGGAAGTATATGGAATCAG+AGG | 0.569837 | 5.1:+72057789 | None:intergenic |
| TTATTGCGACAGGTTTCTGT+CGG | 0.576105 | 5.1:-72056053 | MS.gene017039:intron |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | 5.1:+72057518 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | 5.1:+72055990 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | 5.1:-72057287 | MS.gene017039:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | 5.1:-72055631 | MS.gene017039:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | 5.1:-72057525 | MS.gene017039:CDS |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | 5.1:-72055805 | MS.gene017039:CDS |
| AACAACTAGTATTTGCCCAA+AGG | 0.624762 | 5.1:+72054702 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | 5.1:-72055786 | MS.gene017039:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | 5.1:-72057847 | MS.gene017039:CDS |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | 5.1:-72057317 | MS.gene017039:CDS |
| TGGAAGTATATGGAATCAGA+GGG | 0.646274 | 5.1:+72057790 | None:intergenic |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | 5.1:+72057530 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | 5.1:-72055812 | MS.gene017039:CDS |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | 5.1:-72054618 | MS.gene017039:CDS |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.666319 | 5.1:-72054689 | MS.gene017039:CDS |
| CAACTAGTATTTGCCCAAAG+GGG | 0.709004 | 5.1:+72054704 | None:intergenic |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | 5.1:-72055606 | MS.gene017039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACAAATATTTATCAAA+TGG | + | chr5.1:72057558-72057577 | None:intergenic | 10.0% |
| !! | GTAATTATTTAAATCAAATA+TGG | - | chr5.1:72056267-72056286 | MS.gene017039:intron | 10.0% |
| !! | ATAGAAAGAATTACTAAAAA+AGG | + | chr5.1:72056241-72056260 | None:intergenic | 15.0% |
| !! | TTATGAGTTTAGATAAATTA+GGG | - | chr5.1:72055341-72055360 | MS.gene017039:intron | 15.0% |
| !!! | TATTTTCCTAAGATAATTTA+AGG | - | chr5.1:72054786-72054805 | MS.gene017039:intron | 15.0% |
| !! | ATTACTAATAATACTGACAT+TGG | + | chr5.1:72055443-72055462 | None:intergenic | 20.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | - | chr5.1:72056615-72056634 | MS.gene017039:intron | 20.0% |
| !! | CTAATATAGAAACTAAACTT+GGG | - | chr5.1:72055731-72055750 | MS.gene017039:intron | 20.0% |
| !! | GTTATGAGTTTAGATAAATT+AGG | - | chr5.1:72055340-72055359 | MS.gene017039:intron | 20.0% |
| !! | TACAAATATTTATCAAATGG+TGG | + | chr5.1:72057555-72057574 | None:intergenic | 20.0% |
| !! | TAGTAACCTTAAATTATCTT+AGG | + | chr5.1:72054795-72054814 | None:intergenic | 20.0% |
| !! | TAGTAATTGTTAACATTACA+CGG | - | chr5.1:72055456-72055475 | MS.gene017039:CDS | 20.0% |
| !! | TATGAGTTTAGATAAATTAG+GGG | - | chr5.1:72055342-72055361 | MS.gene017039:intron | 20.0% |
| !! | TCTAATATAGAAACTAAACT+TGG | - | chr5.1:72055730-72055749 | MS.gene017039:intron | 20.0% |
| !!! | AACTCTTTATTCTGAAATTT+TGG | - | chr5.1:72057150-72057169 | MS.gene017039:intron | 20.0% |
| !!! | AGACATTGTTGTTATAAAAA+TGG | + | chr5.1:72055105-72055124 | None:intergenic | 20.0% |
| !!! | ATTGTAGCTCATATTTTTAT+TGG | - | chr5.1:72056354-72056373 | MS.gene017039:intron | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | + | chr5.1:72055690-72055709 | None:intergenic | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | - | chr5.1:72054880-72054899 | MS.gene017039:intron | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | + | chr5.1:72056324-72056343 | None:intergenic | 20.0% |
| !!! | TTATCAGTTTTTCATTATAC+TGG | - | chr5.1:72056063-72056082 | MS.gene017039:intron | 20.0% |
| !!! | TTCATTTCTTTTGTAATTTC+CGG | - | chr5.1:72057684-72057703 | MS.gene017039:intron | 20.0% |
| !!! | TTGTTGTTATAAAAATGGAA+TGG | + | chr5.1:72055100-72055119 | None:intergenic | 20.0% |
| !!! | TTTATCCAAGATATCTTTTT+GGG | + | chr5.1:72055905-72055924 | None:intergenic | 20.0% |
| !!! | TTTATTTTATTTATTGCGAC+AGG | - | chr5.1:72056422-72056441 | MS.gene017039:intron | 20.0% |
| ! | AAAGAAAAATCACGACATAA+TGG | + | chr5.1:72056794-72056813 | None:intergenic | 25.0% |
| ! | AACTATACTTAAGTCAAATG+TGG | - | chr5.1:72057585-72057604 | MS.gene017039:CDS | 25.0% |
| ! | AACTCACAATCTAAACAAAT+AGG | - | chr5.1:72055636-72055655 | MS.gene017039:CDS | 25.0% |
| ! | AAGAAAAATCACGACATAAT+GGG | + | chr5.1:72056793-72056812 | None:intergenic | 25.0% |
| ! | ACTCACAATCTAAACAAATA+GGG | - | chr5.1:72055637-72055656 | MS.gene017039:CDS | 25.0% |
| ! | ACTTGACAGTATCAAATATT+AGG | + | chr5.1:72055563-72055582 | None:intergenic | 25.0% |
| ! | AGTAATTGTTAACATTACAC+GGG | - | chr5.1:72055457-72055476 | MS.gene017039:CDS | 25.0% |
| ! | AGTAGTAATCACATATAATG+AGG | - | chr5.1:72055297-72055316 | MS.gene017039:intron | 25.0% |
| ! | ATACCTTCATGAACAAAATA+CGG | + | chr5.1:72056833-72056852 | None:intergenic | 25.0% |
| ! | ATACGAACTATATGTATGTA+TGG | + | chr5.1:72057520-72057539 | None:intergenic | 25.0% |
| ! | ATGAGTTTAGATAAATTAGG+GGG | - | chr5.1:72055343-72055362 | MS.gene017039:intron | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | - | chr5.1:72054702-72054721 | MS.gene017039:CDS | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | - | chr5.1:72057745-72057764 | MS.gene017039:intron | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | + | chr5.1:72057748-72057767 | None:intergenic | 25.0% |
| ! | CTTGACAGTATCAAATATTA+GGG | + | chr5.1:72055562-72055581 | None:intergenic | 25.0% |
| ! | TAGTAATTCTTTCTATCTGT+TGG | - | chr5.1:72056245-72056264 | MS.gene017039:intron | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | + | chr5.1:72055618-72055637 | None:intergenic | 25.0% |
| ! | TTGACAGTATCAAATATTAG+GGG | + | chr5.1:72055561-72055580 | None:intergenic | 25.0% |
| !! | AGTAGTATATTTTGTCCATT+TGG | - | chr5.1:72057392-72057411 | MS.gene017039:CDS | 25.0% |
| !! | ATCGTTTTGCATTTATTAGT+TGG | + | chr5.1:72055928-72055947 | None:intergenic | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | - | chr5.1:72057843-72057862 | MS.gene017039:CDS | 25.0% |
| !! | GTTTATCCAAGATATCTTTT+TGG | + | chr5.1:72055906-72055925 | None:intergenic | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | - | chr5.1:72057842-72057861 | MS.gene017039:CDS | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | - | chr5.1:72057288-72057307 | MS.gene017039:CDS | 25.0% |
| !!! | GGAAATTTTAGCACAAAATA+TGG | + | chr5.1:72056220-72056239 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTGTTTTCATGT+GGG | - | chr5.1:72057289-72057308 | MS.gene017039:CDS | 25.0% |
| !!! | TAATTTGTTGTTTTCATGTG+GGG | - | chr5.1:72057290-72057309 | MS.gene017039:CDS | 25.0% |
| AAAAGCTTATCTCATCAATG+GGG | - | chr5.1:72056879-72056898 | MS.gene017039:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | + | chr5.1:72054991-72055010 | None:intergenic | 30.0% | |
| AACAACAATGTCTTTGTACT+TGG | - | chr5.1:72055112-72055131 | MS.gene017039:intron | 30.0% | |
| ACATTAAATCATCTCCAGAT+GGG | + | chr5.1:72056604-72056623 | None:intergenic | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | - | chr5.1:72055300-72055319 | MS.gene017039:intron | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | + | chr5.1:72056011-72056030 | None:intergenic | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | - | chr5.1:72056878-72056897 | MS.gene017039:intron | 30.0% | |
| CAAGATCACCTAAAATTTGT+AGG | + | chr5.1:72057334-72057353 | None:intergenic | 30.0% | |
| CACAAGACAATTCTTAAACT+CGG | + | chr5.1:72057107-72057126 | None:intergenic | 30.0% | |
| CACATCTCAAAAAAACCAAA+TGG | + | chr5.1:72057410-72057429 | None:intergenic | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | - | chr5.1:72055301-72055320 | MS.gene017039:intron | 30.0% | |
| GTAATTGTTAACATTACACG+GGG | - | chr5.1:72055458-72055477 | MS.gene017039:CDS | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | + | chr5.1:72055619-72055638 | None:intergenic | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | - | chr5.1:72055302-72055321 | MS.gene017039:intron | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | - | chr5.1:72056877-72056896 | MS.gene017039:intron | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | + | chr5.1:72055617-72055636 | None:intergenic | 30.0% | |
| TCTAAACAAATAGGGAAGTA+AGG | - | chr5.1:72055645-72055664 | MS.gene017039:intron | 30.0% | |
| TGAGTTTAGATAAATTAGGG+GGG | - | chr5.1:72055344-72055363 | MS.gene017039:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | + | chr5.1:72055981-72056000 | None:intergenic | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | - | chr5.1:72057822-72057841 | MS.gene017039:CDS | 30.0% | |
| TTAGACCCAAAAAGATATCT+TGG | - | chr5.1:72055897-72055916 | MS.gene017039:intron | 30.0% | |
| ! | TAGACTTGTACTCTTTTGTT+TGG | - | chr5.1:72057642-72057661 | MS.gene017039:intron | 30.0% |
| ! | TATTCCTATGCACGATTTTA+AGG | - | chr5.1:72056147-72056166 | MS.gene017039:intron | 30.0% |
| ! | TGTTGGATTTTACATGCATA+TGG | - | chr5.1:72057448-72057467 | MS.gene017039:intron | 30.0% |
| ! | TTTCCGTATTTTGTTCATGA+AGG | - | chr5.1:72056827-72056846 | MS.gene017039:intron | 30.0% |
| !! | AGACTTGTACTCTTTTGTTT+GGG | - | chr5.1:72057643-72057662 | MS.gene017039:intron | 30.0% |
| !! | CTACAAATTTTAGGTGATCT+TGG | - | chr5.1:72057332-72057351 | MS.gene017039:CDS | 30.0% |
| !! | TCTATGATGTACTTGCTATA+GGG | - | chr5.1:72057264-72057283 | MS.gene017039:intron | 30.0% |
| !! | TTCTATGATGTACTTGCTAT+AGG | - | chr5.1:72057263-72057282 | MS.gene017039:intron | 30.0% |
| !!! | ACTAGTTGTTTTAGAATGAG+AGG | - | chr5.1:72056037-72056056 | MS.gene017039:CDS | 30.0% |
| !!! | CATTTGGTTTTTTTGAGATG+TGG | - | chr5.1:72057408-72057427 | MS.gene017039:intron | 30.0% |
| !!! | GGAAACACTTTTTTTTCATC+TGG | - | chr5.1:72056375-72056394 | MS.gene017039:intron | 30.0% |
| AAATCTGCATGGTAAATCTG+AGG | - | chr5.1:72057714-72057733 | MS.gene017039:intron | 35.0% | |
| AACAACTAGTATTTGCCCAA+AGG | + | chr5.1:72057786-72057805 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | - | chr5.1:72054969-72054988 | MS.gene017039:intron | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | - | chr5.1:72057715-72057734 | MS.gene017039:intron | 35.0% | |
| ACAAAATTGAGTCTTGCAAG+AGG | + | chr5.1:72055270-72055289 | None:intergenic | 35.0% | |
| ACAACTAGTATTTGCCCAAA+GGG | + | chr5.1:72057785-72057804 | None:intergenic | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | + | chr5.1:72054718-72054737 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | + | chr5.1:72056154-72056173 | None:intergenic | 35.0% | |
| ATTCAAATCATACCAGAACC+AGG | - | chr5.1:72054638-72054657 | MS.gene017039:CDS | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | - | chr5.1:72056680-72056699 | MS.gene017039:intron | 35.0% | |
| ATTTATCAAATGGTGGTCAG+AGG | + | chr5.1:72057548-72057567 | None:intergenic | 35.0% | |
| CACATTAAATCATCTCCAGA+TGG | + | chr5.1:72056605-72056624 | None:intergenic | 35.0% | |
| CCATATACTTCCATTATTGG+TGG | - | chr5.1:72054705-72054724 | MS.gene017039:CDS | 35.0% | |
| GTGATCTTGTAGGCAAAAAA+TGG | + | chr5.1:72057228-72057247 | None:intergenic | 35.0% | |
| TAAGAATTGTCTTGTGTCTC+TGG | - | chr5.1:72057111-72057130 | MS.gene017039:intron | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | - | chr5.1:72057867-72057886 | MS.gene017039:CDS | 35.0% | |
| TAGGAGTGAATCTTGAATGT+TGG | - | chr5.1:72057431-72057450 | MS.gene017039:intron | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | - | chr5.1:72056679-72056698 | MS.gene017039:intron | 35.0% | |
| TCACACATTCTGGATTCATA+TGG | + | chr5.1:72056001-72056020 | None:intergenic | 35.0% | |
| TCTTGCAAGAGGTAAAGAAA+AGG | + | chr5.1:72055259-72055278 | None:intergenic | 35.0% | |
| TGTTGAGAAAGTGATCTTGT+AGG | + | chr5.1:72057238-72057257 | None:intergenic | 35.0% | |
| TTCTCCACTCAACATTGAAT+AGG | + | chr5.1:72056680-72056699 | None:intergenic | 35.0% | |
| TTCTTCAGCATGAACCTTAT+TGG | + | chr5.1:72055954-72055973 | None:intergenic | 35.0% | |
| TTGATGTAGCTGGAATGAAA+AGG | - | chr5.1:72056854-72056873 | MS.gene017039:intron | 35.0% | |
| ! | ATGGAAGTATATGGAATCAG+AGG | + | chr5.1:72054699-72054718 | None:intergenic | 35.0% |
| ! | CCACCAATAATGGAAGTATA+TGG | + | chr5.1:72054708-72054727 | None:intergenic | 35.0% |
| ! | GATCATGGCCTACAAATTTT+AGG | - | chr5.1:72057323-72057342 | MS.gene017039:CDS | 35.0% |
| ! | TGGAAGTATATGGAATCAGA+GGG | + | chr5.1:72054698-72054717 | None:intergenic | 35.0% |
| ! | TGGCTCTATTAGCAAAATGA+AGG | + | chr5.1:72056304-72056323 | None:intergenic | 35.0% |
| ! | TGTGACTTCATATTTGGTTC+AGG | - | chr5.1:72056621-72056640 | MS.gene017039:intron | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | - | chr5.1:72056502-72056521 | MS.gene017039:intron | 35.0% |
| !! | AATTCTTAAACTCGGTGTGT+CGG | + | chr5.1:72057099-72057118 | None:intergenic | 35.0% |
| !! | CTATGATGTACTTGCTATAG+GGG | - | chr5.1:72057265-72057284 | MS.gene017039:intron | 35.0% |
| !! | GCATATGGATTAGAGATTAG+TGG | - | chr5.1:72057463-72057482 | MS.gene017039:intron | 35.0% |
| !! | GTACACGAACAAAAGTATTC+TGG | + | chr5.1:72057033-72057052 | None:intergenic | 35.0% |
| !! | GTACTCTTTTGTTTGGGATT+TGG | - | chr5.1:72057649-72057668 | MS.gene017039:intron | 35.0% |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | - | chr5.1:72057412-72057431 | MS.gene017039:intron | 35.0% |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | - | chr5.1:72056483-72056502 | MS.gene017039:intron | 35.0% |
| AATATTAGGGGACGTAAACC+TGG | + | chr5.1:72055549-72055568 | None:intergenic | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | - | chr5.1:72056907-72056926 | MS.gene017039:intron | 40.0% | |
| CAACTAGTATTTGCCCAAAG+GGG | + | chr5.1:72057784-72057803 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | + | chr5.1:72054958-72054977 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | - | chr5.1:72055168-72055187 | MS.gene017039:intron | 40.0% | |
| CCTTCACAAACAAATTAGCC+TGG | + | chr5.1:72054659-72054678 | None:intergenic | 40.0% | |
| CCTTTGCACCTAAAACTTGT+AGG | + | chr5.1:72057358-72057377 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | - | chr5.1:72054960-72054979 | MS.gene017039:intron | 40.0% | |
| GGCTGGAATAGCTCTTAAAA+TGG | + | chr5.1:72054937-72054956 | None:intergenic | 40.0% | |
| GGGTTGTGATATTCATTGCT+TGG | - | chr5.1:72056899-72056918 | MS.gene017039:intron | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | + | chr5.1:72054970-72054989 | None:intergenic | 40.0% | |
| GTAGCCTATTCAATGTTGAG+TGG | - | chr5.1:72056673-72056692 | MS.gene017039:intron | 40.0% | |
| TGCAAAACGATCGACCAATA+AGG | - | chr5.1:72055937-72055956 | MS.gene017039:intron | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | - | chr5.1:72057064-72057083 | MS.gene017039:intron | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | - | chr5.1:72056903-72056922 | MS.gene017039:intron | 40.0% | |
| TTAACATTACACGGGGAGTT+GGG | - | chr5.1:72055465-72055484 | MS.gene017039:intron | 40.0% | |
| TTATTGCGACAGGTTTCTGT+CGG | - | chr5.1:72056432-72056451 | MS.gene017039:intron | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | - | chr5.1:72057796-72057815 | MS.gene017039:CDS | 40.0% |
| ! | ATACTGTCAAGTCACTGACT+TGG | - | chr5.1:72055571-72055590 | MS.gene017039:intron | 40.0% |
| ! | CAAACAAATTAGCCTGGTTC+TGG | + | chr5.1:72054653-72054672 | None:intergenic | 40.0% |
| ! | GATCTTGGCCTACAAGTTTT+AGG | - | chr5.1:72057347-72057366 | MS.gene017039:CDS | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | - | chr5.1:72054725-72054744 | MS.gene017039:intron | 40.0% |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | - | chr5.1:72054656-72054675 | MS.gene017039:CDS | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+AGG | + | chr5.1:72055822-72055841 | None:intergenic | 40.0% |
| !! | TACCATCTCAAGTTGATTCC+AGG | + | chr5.1:72056748-72056767 | None:intergenic | 40.0% |
| !! | TAGTAAGCTTTAGCTTGAGG+AGG | + | chr5.1:72055819-72055838 | None:intergenic | 40.0% |
| !! | TGAAGGTATCTTGATGTAGC+TGG | - | chr5.1:72056844-72056863 | MS.gene017039:intron | 40.0% |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | - | chr5.1:72057355-72057374 | MS.gene017039:CDS | 40.0% |
| !!! | CTGACTTGGGGATGATATTT+TGG | - | chr5.1:72056466-72056485 | MS.gene017039:intron | 40.0% |
| !!! | TTGTTGTTTTCATGTGGGGA+AGG | - | chr5.1:72057294-72057313 | MS.gene017039:CDS | 40.0% |
| CTCCTGGAATCAACTTGAGA+TGG | - | chr5.1:72056743-72056762 | MS.gene017039:intron | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | + | chr5.1:72055507-72055526 | None:intergenic | 45.0% | |
| GCTGAGTAAGATCATAGACC+TGG | + | chr5.1:72054901-72054920 | None:intergenic | 45.0% | |
| GTTAACATTACACGGGGAGT+TGG | - | chr5.1:72055464-72055483 | MS.gene017039:intron | 45.0% | |
| TACTCATATCCACCAAGAGC+AGG | + | chr5.1:72056498-72056517 | None:intergenic | 45.0% | |
| TGCTTACCGAAACTATCTGC+AGG | - | chr5.1:72057004-72057023 | MS.gene017039:intron | 45.0% | |
| TGGCAACCTGCAGATAGTTT+CGG | + | chr5.1:72057013-72057032 | None:intergenic | 45.0% | |
| TTAAGAGCAGCGTGATAAGG+AGG | + | chr5.1:72055504-72055523 | None:intergenic | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | + | chr5.1:72057815-72057834 | None:intergenic | 45.0% | |
| TTTCATGTGGGGAAGGAAGT+GGG | - | chr5.1:72057301-72057320 | MS.gene017039:CDS | 45.0% | |
| ! | CCATGCAGATTTTGCTTGAC+CGG | + | chr5.1:72057706-72057725 | None:intergenic | 45.0% |
| ! | GGTTACTTCATGGCTGACTT+GGG | - | chr5.1:72056453-72056472 | MS.gene017039:intron | 45.0% |
| ! | GGTTTCTGTCGGTTACTTCA+TGG | - | chr5.1:72056443-72056462 | MS.gene017039:intron | 45.0% |
| ! | GTAAACCTGGTTTGATGGCT+GGG | + | chr5.1:72055536-72055555 | None:intergenic | 45.0% |
| ! | TAAACCTGGTTTGATGGCTG+GGG | + | chr5.1:72055535-72055554 | None:intergenic | 45.0% |
| ! | TCACTTGATAGCAACCCATC+TGG | - | chr5.1:72056587-72056606 | MS.gene017039:intron | 45.0% |
| ! | TTTTCATGTGGGGAAGGAAG+TGG | - | chr5.1:72057300-72057319 | MS.gene017039:CDS | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | - | chr5.1:72055605-72055624 | MS.gene017039:CDS | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | - | chr5.1:72056727-72056746 | MS.gene017039:intron | 45.0% |
| !! | GTTACTTCATGGCTGACTTG+GGG | - | chr5.1:72056454-72056473 | MS.gene017039:intron | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | - | chr5.1:72056486-72056505 | MS.gene017039:intron | 45.0% |
| !!! | AAATTTAGATTTTTTTTTTT+TGG | + | chr5.1:72054869-72054888 | None:intergenic | 5.0% |
| ACGTTGGATTCTAGTGAGGC+TGG | + | chr5.1:72054954-72054973 | None:intergenic | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | - | chr5.1:72056699-72056718 | MS.gene017039:intron | 50.0% | |
| CCGGTCAAGCAAAATCTGCA+TGG | - | chr5.1:72057703-72057722 | MS.gene017039:intron | 50.0% | |
| CGGTTACTTCATGGCTGACT+TGG | - | chr5.1:72056452-72056471 | MS.gene017039:intron | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | - | chr5.1:72055198-72055217 | MS.gene017039:intron | 50.0% | |
| GAGTTCTCATTCTTCCGCTC+TGG | - | chr5.1:72056977-72056996 | MS.gene017039:intron | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | - | chr5.1:72055197-72055216 | MS.gene017039:intron | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | - | chr5.1:72055199-72055218 | MS.gene017039:intron | 50.0% | |
| TCTGGGGGTAAGAATGGTCT+TGG | - | chr5.1:72055214-72055233 | MS.gene017039:intron | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | - | chr5.1:72055196-72055215 | MS.gene017039:intron | 50.0% | |
| TTCAGCAGATGCACCCCTTT+GGG | - | chr5.1:72057768-72057787 | MS.gene017039:CDS | 50.0% | |
| ! | CGTAAACCTGGTTTGATGGC+TGG | + | chr5.1:72055537-72055556 | None:intergenic | 50.0% |
| ! | GGGACGTAAACCTGGTTTGA+TGG | + | chr5.1:72055541-72055560 | None:intergenic | 50.0% |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | - | chr5.1:72055208-72055227 | MS.gene017039:intron | 50.0% |
| CAGCGTGATAAGGAGGTCGA+GGG | + | chr5.1:72055497-72055516 | None:intergenic | 55.0% | |
| GTTCAGCAGATGCACCCCTT+TGG | - | chr5.1:72057767-72057786 | MS.gene017039:CDS | 55.0% | |
| TCGGTAAGCATGTGCCAGAG+CGG | + | chr5.1:72056994-72057013 | None:intergenic | 55.0% | |
| TGGGGAAGGAAGTGGGATCA+TGG | - | chr5.1:72057308-72057327 | MS.gene017039:CDS | 55.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | + | chr5.1:72055498-72055517 | None:intergenic | 60.0% | |
| TCCACCCCAGCCATCAAACC+AGG | - | chr5.1:72055528-72055547 | MS.gene017039:intron | 60.0% | |
| ! | ACCTGGTTTGATGGCTGGGG+TGG | + | chr5.1:72055532-72055551 | None:intergenic | 60.0% |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | + | chr5.1:72055529-72055548 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 72054612 | 72057895 | 72054612 | ID=MS.gene017039 |
| chr5.1 | mRNA | 72054612 | 72057895 | 72054612 | ID=MS.gene017039.t1;Parent=MS.gene017039 |
| chr5.1 | exon | 72057761 | 72057895 | 72057761 | ID=MS.gene017039.t1.exon1;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72057761 | 72057895 | 72057761 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72057517 | 72057605 | 72057517 | ID=MS.gene017039.t1.exon2;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72057517 | 72057605 | 72057517 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72057287 | 72057425 | 72057287 | ID=MS.gene017039.t1.exon3;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72057287 | 72057425 | 72057287 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72055989 | 72056063 | 72055989 | ID=MS.gene017039.t1.exon4;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72055989 | 72056063 | 72055989 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72055743 | 72055864 | 72055743 | ID=MS.gene017039.t1.exon5;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72055743 | 72055864 | 72055743 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72055583 | 72055658 | 72055583 | ID=MS.gene017039.t1.exon6;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72055583 | 72055658 | 72055583 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72055422 | 72055481 | 72055422 | ID=MS.gene017039.t1.exon7;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72055422 | 72055481 | 72055422 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| chr5.1 | exon | 72054612 | 72054740 | 72054612 | ID=MS.gene017039.t1.exon8;Parent=MS.gene017039.t1 |
| chr5.1 | CDS | 72054612 | 72054740 | 72054612 | ID=cds.MS.gene017039.t1;Parent=MS.gene017039.t1 |
| Gene Sequence |
| Protein sequence |
