Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008402.t1 | XP_013460512.1 | 98.7 | 232 | 3 | 0 | 14 | 245 | 33 | 264 | 6.20E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008402.t1 | Q6PGS5 | 30.5 | 226 | 137 | 5 | 22 | 238 | 31 | 245 | 6.9e-16 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008402.t1 | I3SF47 | 98.7 | 232 | 3 | 0 | 14 | 245 | 33 | 264 | 4.5e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008402 | MS.gene47736 | PPI |
| MS.gene008402 | MS.gene017039 | PPI |
| MS.gene008402 | MS.gene019169 | PPI |
| MS.gene008402 | MS.gene48005 | PPI |
| MS.gene008402 | MS.gene038254 | PPI |
| MS.gene46944 | MS.gene008402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008402.t1 | MTR_3g063070 | 98.707 | 232 | 3 | 0 | 14 | 245 | 33 | 264 | 3.45e-167 | 462 |
| MS.gene008402.t1 | MTR_3g450410 | 47.162 | 229 | 121 | 0 | 14 | 242 | 46 | 274 | 1.95e-75 | 230 |
| MS.gene008402.t1 | MTR_5g090550 | 50.218 | 229 | 114 | 0 | 14 | 242 | 46 | 274 | 1.76e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008402.t1 | AT4G10360 | 59.746 | 236 | 95 | 0 | 9 | 244 | 26 | 261 | 1.13e-99 | 291 |
| MS.gene008402.t1 | AT4G10360 | 59.746 | 236 | 95 | 0 | 9 | 244 | 26 | 261 | 1.13e-99 | 291 |
| MS.gene008402.t1 | AT4G10360 | 59.746 | 236 | 95 | 0 | 9 | 244 | 26 | 261 | 1.13e-99 | 291 |
| MS.gene008402.t1 | AT4G19645 | 52.609 | 230 | 108 | 1 | 14 | 242 | 39 | 268 | 3.01e-77 | 234 |
| MS.gene008402.t1 | AT4G19645 | 52.609 | 230 | 108 | 1 | 14 | 242 | 39 | 268 | 3.01e-77 | 234 |
| MS.gene008402.t1 | AT4G19645 | 52.609 | 230 | 108 | 1 | 14 | 242 | 39 | 268 | 3.01e-77 | 234 |
| MS.gene008402.t1 | AT4G19645 | 52.609 | 230 | 108 | 1 | 14 | 242 | 39 | 268 | 3.01e-77 | 234 |
| MS.gene008402.t1 | AT4G19645 | 52.609 | 230 | 108 | 1 | 14 | 242 | 39 | 268 | 3.01e-77 | 234 |
| MS.gene008402.t1 | AT1G31300 | 47.186 | 231 | 122 | 0 | 10 | 240 | 44 | 274 | 2.76e-69 | 214 |
| MS.gene008402.t1 | AT1G31300 | 47.186 | 231 | 122 | 0 | 10 | 240 | 44 | 274 | 2.76e-69 | 214 |
| MS.gene008402.t1 | AT1G31300 | 47.186 | 231 | 122 | 0 | 10 | 240 | 44 | 274 | 2.76e-69 | 214 |
Find 44 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAGTGATGAATTTATTT+TGG | 0.229458 | 3.1:-53065563 | MS.gene008402:CDS |
| GCATGCAGACCTCATCAAAA+TGG | 0.316045 | 3.1:+53065727 | None:intergenic |
| AGCACATATCTACATATTAA+TGG | 0.324767 | 3.1:-53066672 | MS.gene008402:CDS |
| AATGGTGTTGCATTGTTCTT+CGG | 0.349885 | 3.1:-53066481 | MS.gene008402:CDS |
| ATGGTGTTGCATTGTTCTTC+GGG | 0.356765 | 3.1:-53066480 | MS.gene008402:CDS |
| CTTGACCACTTAGCAAAGAT+TGG | 0.384356 | 3.1:+53066693 | None:intergenic |
| TTTCTCAAATTCAGTATTGT+CGG | 0.391339 | 3.1:-53067718 | MS.gene008402:intron |
| GAGTTTGACTTTGAACTGTT+AGG | 0.399230 | 3.1:-53068200 | MS.gene008402:CDS |
| AATGGGTTTCTACAGCTTGT+TGG | 0.403889 | 3.1:-53065601 | MS.gene008402:CDS |
| AGAGCTCAAAACTTTACATC+TGG | 0.413236 | 3.1:-53066504 | MS.gene008402:CDS |
| TCCCCTACTTCAGGTGAAGC+AGG | 0.423119 | 3.1:-53065631 | MS.gene008402:intron |
| TACAGAAAATTGAGCAGTGC+TGG | 0.425806 | 3.1:-53067966 | MS.gene008402:CDS |
| TTCTTTGAACAGTTCTCTAC+AGG | 0.430747 | 3.1:-53067280 | MS.gene008402:intron |
| TAATCACATATACAGGTACT+TGG | 0.468412 | 3.1:-53066542 | MS.gene008402:intron |
| GGAAAGTTGAATGGAATAAC+CGG | 0.468796 | 3.1:-53067944 | MS.gene008402:intron |
| TACCATCTTAGATTAACAAA+AGG | 0.476978 | 3.1:+53066626 | None:intergenic |
| TATTCCAAACCTCCCAAAGC+TGG | 0.477354 | 3.1:+53067217 | None:intergenic |
| ATTATCCAATCTTTGCTAAG+TGG | 0.477430 | 3.1:-53066698 | MS.gene008402:CDS |
| TGCATTGTTCTTCGGGTGGT+TGG | 0.478507 | 3.1:-53066473 | MS.gene008402:intron |
| CAAGAGGTAAAATGAAGTAA+AGG | 0.496123 | 3.1:+53067803 | None:intergenic |
| GTGTAAACAAGAACATGAAC+AGG | 0.498112 | 3.1:+53065760 | None:intergenic |
| GTGAAGCAGGTCTTCCCAAT+GGG | 0.505190 | 3.1:-53065618 | MS.gene008402:CDS |
| CTGGAAGATTGCCAAGGGTA+TGG | 0.506373 | 3.1:-53065538 | MS.gene008402:CDS |
| CATGCAGACCTCATCAAAAT+GGG | 0.510699 | 3.1:+53065728 | None:intergenic |
| TTTAGTTCACGGTTGTTCAT+CGG | 0.516483 | 3.1:-53067990 | MS.gene008402:CDS |
| CATTTAAGGTTCTACACCAC+GGG | 0.531024 | 3.1:-53066736 | MS.gene008402:intron |
| AACAAGCTGTAGAAACCCAT+TGG | 0.539360 | 3.1:+53065603 | None:intergenic |
| GGGTTTCTACAGCTTGTTGG+TGG | 0.540026 | 3.1:-53065598 | MS.gene008402:CDS |
| TCAAAACTTTACATCTGGAA+TGG | 0.555641 | 3.1:-53066499 | MS.gene008402:CDS |
| GGTGAAGCAGGTCTTCCCAA+TGG | 0.558925 | 3.1:-53065619 | MS.gene008402:CDS |
| TGTTCTTGTTTACACACATG+TGG | 0.560732 | 3.1:-53065752 | MS.gene008402:CDS |
| AACAAAAGGAGTTGTGCCCT+CGG | 0.560818 | 3.1:+53066640 | None:intergenic |
| ACAAGCTGTAGAAACCCATT+GGG | 0.561929 | 3.1:+53065604 | None:intergenic |
| ACAGAAAATTGAGCAGTGCT+GGG | 0.571297 | 3.1:-53067965 | MS.gene008402:CDS |
| TACAGGTACTTGGACACCGC+CGG | 0.578821 | 3.1:-53066532 | MS.gene008402:intron |
| TTGGTTCTGGAAGATTGCCA+AGG | 0.591420 | 3.1:-53065544 | MS.gene008402:CDS |
| GCAGTGCTGGGAAAGTTGAA+TGG | 0.591925 | 3.1:-53067953 | MS.gene008402:CDS |
| ATAGATCTGATAAGATCAAG+AGG | 0.592544 | 3.1:+53067787 | None:intergenic |
| TGGTTCTGGAAGATTGCCAA+GGG | 0.598928 | 3.1:-53065543 | MS.gene008402:CDS |
| TCATTTAAGGTTCTACACCA+CGG | 0.635801 | 3.1:-53066737 | MS.gene008402:intron |
| GTGTTGCATTGTTCTTCGGG+TGG | 0.657137 | 3.1:-53066477 | MS.gene008402:CDS |
| TTCATCACTGATAACACAGG+AGG | 0.672119 | 3.1:+53065573 | None:intergenic |
| TTGAAAACAACGATAGCCCG+TGG | 0.685510 | 3.1:+53066720 | None:intergenic |
| AAATTCATCACTGATAACAC+AGG | 0.689682 | 3.1:+53065570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAGGATTATCAAA+AGG | - | chr3.1:53067430-53067449 | MS.gene008402:intron | 15.0% |
| !! | TCATAATTAAAAGTGAAAAT+AGG | + | chr3.1:53066581-53066600 | None:intergenic | 15.0% |
| !! | TTAAAAAAGGATTATCAAAA+GGG | - | chr3.1:53067431-53067450 | MS.gene008402:intron | 15.0% |
| !!! | AACATTTTTACAAAGTAAAT+AGG | + | chr3.1:53066544-53066563 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGATTTGTAT+AGG | - | chr3.1:53066695-53066714 | MS.gene008402:CDS | 15.0% |
| !! | ACAAGATATAAATGAAAACA+AGG | + | chr3.1:53066679-53066698 | None:intergenic | 20.0% |
| !! | AGATTTAAATCTAACAGAAA+CGG | + | chr3.1:53066297-53066316 | None:intergenic | 20.0% |
| !! | ATGTAAGTCAAAAAGATATT+AGG | - | chr3.1:53066517-53066536 | MS.gene008402:CDS | 20.0% |
| !! | ATTACTTTAATCACATATAC+AGG | - | chr3.1:53067163-53067182 | MS.gene008402:intron | 20.0% |
| !! | ATTCACTAGATTAAAATCAT+AGG | + | chr3.1:53068050-53068069 | None:intergenic | 20.0% |
| !! | GTCAAATTAAAAGTCAATTA+TGG | + | chr3.1:53065835-53065854 | None:intergenic | 20.0% |
| !! | TAACTAACTTCATTCATTTA+AGG | - | chr3.1:53066962-53066981 | MS.gene008402:intron | 20.0% |
| !! | TAGTGACAGATAATTAAAAA+AGG | - | chr3.1:53067418-53067437 | MS.gene008402:intron | 20.0% |
| !! | TCTTTAGTAACATTATTCTT+AGG | - | chr3.1:53066356-53066375 | MS.gene008402:intron | 20.0% |
| !! | TGTAAGTCAAAAAGATATTA+GGG | - | chr3.1:53066518-53066537 | MS.gene008402:CDS | 20.0% |
| !! | TTCACTAGATTAAAATCATA+GGG | + | chr3.1:53068049-53068068 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGATCTTCTTGA+AGG | - | chr3.1:53065679-53065698 | MS.gene008402:intron | 20.0% |
| !!! | TATCAGTGATGAATTTATTT+TGG | - | chr3.1:53068149-53068168 | MS.gene008402:intron | 20.0% |
| !!! | TTATTTCATTTTTCAATGCA+GGG | - | chr3.1:53065856-53065875 | MS.gene008402:intron | 20.0% |
| !!! | TTTATTTCATTTTTCAATGC+AGG | - | chr3.1:53065855-53065874 | MS.gene008402:intron | 20.0% |
| ! | AAACAGAAATCGTTATACAA+AGG | + | chr3.1:53065799-53065818 | None:intergenic | 25.0% |
| ! | AAATACACACAAAAACCAAA+TGG | + | chr3.1:53067809-53067828 | None:intergenic | 25.0% |
| ! | AACATTATTCTTAGGCATTA+TGG | - | chr3.1:53066364-53066383 | MS.gene008402:intron | 25.0% |
| ! | AATTTGAGTCATTTGATGTA+TGG | - | chr3.1:53067711-53067730 | MS.gene008402:intron | 25.0% |
| ! | AGCACATATCTACATATTAA+TGG | - | chr3.1:53067040-53067059 | MS.gene008402:intron | 25.0% |
| ! | GATTTAAATCTAACAGAAAC+GGG | + | chr3.1:53066296-53066315 | None:intergenic | 25.0% |
| ! | GGAAAGAATGATTATATAGT+TGG | - | chr3.1:53066385-53066404 | MS.gene008402:intron | 25.0% |
| ! | GTTCTCAATGAAAAACATAA+AGG | + | chr3.1:53067748-53067767 | None:intergenic | 25.0% |
| ! | TACCATCTTAGATTAACAAA+AGG | + | chr3.1:53067089-53067108 | None:intergenic | 25.0% |
| ! | TTTCTCAAATTCAGTATTGT+CGG | - | chr3.1:53065994-53066013 | MS.gene008402:intron | 25.0% |
| !! | TTATGTTTTTCATTGAGAAC+TGG | - | chr3.1:53067748-53067767 | MS.gene008402:CDS | 25.0% |
| !!! | ATTTTTTAGTACTCATGAGA+GGG | - | chr3.1:53066059-53066078 | MS.gene008402:intron | 25.0% |
| !!! | TATTTCATTTTTCAATGCAG+GGG | - | chr3.1:53065857-53065876 | MS.gene008402:intron | 25.0% |
| !!! | TATTTGCTTGCTTTTACTTT+TGG | - | chr3.1:53067128-53067147 | MS.gene008402:intron | 25.0% |
| !!! | TGATGAATTTATTTTGGTTC+TGG | - | chr3.1:53068155-53068174 | MS.gene008402:intron | 25.0% |
| !!! | TTATGGTCATGCTTTTATTT+TGG | - | chr3.1:53067325-53067344 | MS.gene008402:intron | 25.0% |
| AAACAACTTAATGACCAGTT+TGG | + | chr3.1:53066871-53066890 | None:intergenic | 30.0% | |
| AAAGCAGGTAAATGAAAACA+AGG | + | chr3.1:53066612-53066631 | None:intergenic | 30.0% | |
| AAATTCATCACTGATAACAC+AGG | + | chr3.1:53068145-53068164 | None:intergenic | 30.0% | |
| AATACACTACTAGCATATGA+TGG | + | chr3.1:53066265-53066284 | None:intergenic | 30.0% | |
| ATAAGATAAGCAACTTCTTC+AGG | + | chr3.1:53067309-53067328 | None:intergenic | 30.0% | |
| ATAGATCTGATAAGATCAAG+AGG | + | chr3.1:53065928-53065947 | None:intergenic | 30.0% | |
| ATATCAAATACGATGCCATT+TGG | - | chr3.1:53067791-53067810 | MS.gene008402:CDS | 30.0% | |
| ATTATCCAATCTTTGCTAAG+TGG | - | chr3.1:53067014-53067033 | MS.gene008402:intron | 30.0% | |
| CAAGAGGTAAAATGAAGTAA+AGG | + | chr3.1:53065912-53065931 | None:intergenic | 30.0% | |
| GAAACAAAATGAAATCAAGG+TGG | - | chr3.1:53066791-53066810 | MS.gene008402:intron | 30.0% | |
| GATATCAAACAAGAAGAAAC+AGG | + | chr3.1:53066321-53066340 | None:intergenic | 30.0% | |
| TAAAGGATGCAAAAAAAGCA+TGG | + | chr3.1:53065895-53065914 | None:intergenic | 30.0% | |
| TAATCACATATACAGGTACT+TGG | - | chr3.1:53067170-53067189 | MS.gene008402:intron | 30.0% | |
| TACAAAACATAGAACATGAC+TGG | + | chr3.1:53067591-53067610 | None:intergenic | 30.0% | |
| TCAAAACTTTACATCTGGAA+TGG | - | chr3.1:53067213-53067232 | MS.gene008402:intron | 30.0% | |
| TCGTTATACAAAGGAATTAC+CGG | + | chr3.1:53065790-53065809 | None:intergenic | 30.0% | |
| TGAAGAAGTTGCTTATCTTA+TGG | - | chr3.1:53067308-53067327 | MS.gene008402:intron | 30.0% | |
| TTGTATATCTCTTCCATTGA+TGG | + | chr3.1:53066218-53066237 | None:intergenic | 30.0% | |
| TTTGTCCAACTTATCTGAAT+TGG | - | chr3.1:53065590-53065609 | MS.gene008402:CDS | 30.0% | |
| ! | CATGATAAGTTTTCCATCAA+TGG | - | chr3.1:53066202-53066221 | MS.gene008402:intron | 30.0% |
| ! | CTAAAACATGATCACCTTTT+AGG | + | chr3.1:53066104-53066123 | None:intergenic | 30.0% |
| ! | CTCCTTTTGTTAATCTAAGA+TGG | - | chr3.1:53067084-53067103 | MS.gene008402:intron | 30.0% |
| ! | GTCATGTTCTATGTTTTGTA+TGG | - | chr3.1:53067591-53067610 | MS.gene008402:intron | 30.0% |
| ! | GTTATGAATGAGCTATGTTT+TGG | - | chr3.1:53067376-53067395 | MS.gene008402:intron | 30.0% |
| ! | TTAGACAAAACTTTGAAAGC+AGG | + | chr3.1:53066627-53066646 | None:intergenic | 30.0% |
| !! | AGGTTATTTTCTAACAGATC+TGG | - | chr3.1:53066452-53066471 | MS.gene008402:intron | 30.0% |
| !! | ATTTGGAATTTTCCAGCTTT+GGG | - | chr3.1:53066483-53066502 | MS.gene008402:CDS | 30.0% |
| !! | CCTTGATTTCATTTTGTTTC+CGG | + | chr3.1:53066791-53066810 | None:intergenic | 30.0% |
| !! | TATTTGGAATTTTCCAGCTT+TGG | - | chr3.1:53066482-53066501 | MS.gene008402:CDS | 30.0% |
| !!! | CTTCATTTAGTTTTCTCTTC+TGG | - | chr3.1:53067354-53067373 | MS.gene008402:intron | 30.0% |
| !!! | GATTTTTTAGTACTCATGAG+AGG | - | chr3.1:53066058-53066077 | MS.gene008402:intron | 30.0% |
| !!! | TTTTTTAGTACTCATGAGAG+GGG | - | chr3.1:53066060-53066079 | MS.gene008402:intron | 30.0% |
| AACTTCTTCAGGTACTACAA+TGG | + | chr3.1:53067298-53067317 | None:intergenic | 35.0% | |
| AGAGCTCAAAACTTTACATC+TGG | - | chr3.1:53067208-53067227 | MS.gene008402:intron | 35.0% | |
| ATAAACTATGCAGGCCTAAA+AGG | - | chr3.1:53066087-53066106 | MS.gene008402:intron | 35.0% | |
| ATCAGCCAATTCAGATAAGT+TGG | + | chr3.1:53065598-53065617 | None:intergenic | 35.0% | |
| CCGGAAACAAAATGAAATCA+AGG | - | chr3.1:53066788-53066807 | MS.gene008402:intron | 35.0% | |
| GAGAACTGTTCAAAGAATGA+TGG | + | chr3.1:53066429-53066448 | None:intergenic | 35.0% | |
| GGAAAGTTGAATGGAATAAC+CGG | - | chr3.1:53065768-53065787 | MS.gene008402:CDS | 35.0% | |
| GGAGTTAAAGTACAAAATGC+TGG | - | chr3.1:53067629-53067648 | MS.gene008402:intron | 35.0% | |
| GTGTAAACAAGAACATGAAC+AGG | + | chr3.1:53067955-53067974 | None:intergenic | 35.0% | |
| TAAGAAACATAAGCAGCGTT+TGG | - | chr3.1:53067534-53067553 | MS.gene008402:intron | 35.0% | |
| TAGTTAGCATAGCTAAGATG+AGG | + | chr3.1:53066948-53066967 | None:intergenic | 35.0% | |
| TGTAAAGTATATATGCGACG+AGG | + | chr3.1:53068022-53068041 | None:intergenic | 35.0% | |
| TTCTTTGAACAGTTCTCTAC+AGG | - | chr3.1:53066432-53066451 | MS.gene008402:intron | 35.0% | |
| TTGGTACTGTCTATCATACT+CGG | - | chr3.1:53067258-53067277 | MS.gene008402:CDS | 35.0% | |
| ! | ATTAATGGTTCTTTTCACCG+AGG | - | chr3.1:53067055-53067074 | MS.gene008402:intron | 35.0% |
| ! | GAGTTTGACTTTGAACTGTT+AGG | - | chr3.1:53065512-53065531 | MS.gene008402:CDS | 35.0% |
| ! | TCATTTAAGGTTCTACACCA+CGG | - | chr3.1:53066975-53066994 | MS.gene008402:intron | 35.0% |
| ! | TGTTCTTGTTTACACACATG+TGG | - | chr3.1:53067960-53067979 | MS.gene008402:CDS | 35.0% |
| ! | TTAATGGTTCTTTTCACCGA+GGG | - | chr3.1:53067056-53067075 | MS.gene008402:intron | 35.0% |
| ! | TTTAGTTCACGGTTGTTCAT+CGG | - | chr3.1:53065722-53065741 | MS.gene008402:intron | 35.0% |
| !! | AATGGTGTTGCATTGTTCTT+CGG | - | chr3.1:53067231-53067250 | MS.gene008402:CDS | 35.0% |
| !! | CATTTTGTTTCCGGTGTTTT+TGG | + | chr3.1:53066782-53066801 | None:intergenic | 35.0% |
| !!! | AAGTTTTGAGCTCTTAAGAC+CGG | + | chr3.1:53067202-53067221 | None:intergenic | 35.0% |
| !!! | CAGATCTGGCTTTTGTTATT+TGG | - | chr3.1:53066466-53066485 | MS.gene008402:intron | 35.0% |
| AACAAGCTGTAGAAACCCAT+TGG | + | chr3.1:53068112-53068131 | None:intergenic | 40.0% | |
| AACGCTTTCTCAAACCAAAC+TGG | - | chr3.1:53066854-53066873 | MS.gene008402:intron | 40.0% | |
| ACAAGCTGTAGAAACCCATT+GGG | + | chr3.1:53068111-53068130 | None:intergenic | 40.0% | |
| ACAGAAAATTGAGCAGTGCT+GGG | - | chr3.1:53065747-53065766 | MS.gene008402:CDS | 40.0% | |
| ATAAGCAGCGTTTGGTAGAA+AGG | - | chr3.1:53067542-53067561 | MS.gene008402:intron | 40.0% | |
| CATGCAGACCTCATCAAAAT+GGG | + | chr3.1:53067987-53068006 | None:intergenic | 40.0% | |
| CTATGCTTCACCAAAAACAC+CGG | - | chr3.1:53066769-53066788 | MS.gene008402:intron | 40.0% | |
| CTTGACCACTTAGCAAAGAT+TGG | + | chr3.1:53067022-53067041 | None:intergenic | 40.0% | |
| GAGATAGAGATAAACGCACA+CGG | - | chr3.1:53067864-53067883 | MS.gene008402:intron | 40.0% | |
| GTATGGCGCAAGTTAATATC+AGG | - | chr3.1:53067608-53067627 | MS.gene008402:intron | 40.0% | |
| TACAGAAAATTGAGCAGTGC+TGG | - | chr3.1:53065746-53065765 | MS.gene008402:CDS | 40.0% | |
| TTCATCACTGATAACACAGG+AGG | + | chr3.1:53068142-53068161 | None:intergenic | 40.0% | |
| ! | AATGGGTTTCTACAGCTTGT+TGG | - | chr3.1:53068111-53068130 | MS.gene008402:intron | 40.0% |
| ! | CATTTAAGGTTCTACACCAC+GGG | - | chr3.1:53066976-53066995 | MS.gene008402:intron | 40.0% |
| !! | AAGAGTTTTGACCATACCCT+TGG | + | chr3.1:53068188-53068207 | None:intergenic | 40.0% |
| !! | ATGGTGTTGCATTGTTCTTC+GGG | - | chr3.1:53067232-53067251 | MS.gene008402:CDS | 40.0% |
| !! | CTGTGTTTCATTTTTCCTGC+AGG | - | chr3.1:53067916-53067935 | MS.gene008402:intron | 40.0% |
| !!! | TGACTGCTGCTTTTAGTTCA+CGG | - | chr3.1:53065711-53065730 | MS.gene008402:intron | 40.0% |
| AACAAAAGGAGTTGTGCCCT+CGG | + | chr3.1:53067075-53067094 | None:intergenic | 45.0% | |
| AGGGGAGTGATAAACTATGC+AGG | - | chr3.1:53066078-53066097 | MS.gene008402:intron | 45.0% | |
| GCATGCAGACCTCATCAAAA+TGG | + | chr3.1:53067988-53068007 | None:intergenic | 45.0% | |
| TATTCCAAACCTCCCAAAGC+TGG | + | chr3.1:53066498-53066517 | None:intergenic | 45.0% | |
| TTGAAAACAACGATAGCCCG+TGG | + | chr3.1:53066995-53067014 | None:intergenic | 45.0% | |
| ! | CATTTTTCCTGCAGGTAGCA+AGG | - | chr3.1:53067924-53067943 | MS.gene008402:intron | 45.0% |
| ! | GTCTTTTTCTCCCCTACTTC+AGG | - | chr3.1:53068072-53068091 | MS.gene008402:intron | 45.0% |
| ! | TTTTGAGCTCTTAAGACCGG+CGG | + | chr3.1:53067199-53067218 | None:intergenic | 45.0% |
| !! | CATGTGGACCCATTTTGATG+AGG | - | chr3.1:53067976-53067995 | MS.gene008402:CDS | 45.0% |
| !! | TGGTTCTGGAAGATTGCCAA+GGG | - | chr3.1:53068169-53068188 | MS.gene008402:intron | 45.0% |
| !! | TTGGTTCTGGAAGATTGCCA+AGG | - | chr3.1:53068168-53068187 | MS.gene008402:intron | 45.0% |
| !!! | CGGTGTTTTTGGTGAAGCAT+AGG | + | chr3.1:53066771-53066790 | None:intergenic | 45.0% |
| !!! | TGGAATTTTCCAGCTTTGGG+AGG | - | chr3.1:53066486-53066505 | MS.gene008402:CDS | 45.0% |
| !!! | TTTTCCAGCTTTGGGAGGTT+TGG | - | chr3.1:53066491-53066510 | MS.gene008402:CDS | 45.0% |
| ACCTGCTTCACCTGAAGTAG+GGG | + | chr3.1:53068085-53068104 | None:intergenic | 50.0% | |
| AGACCTGCTTCACCTGAAGT+AGG | + | chr3.1:53068087-53068106 | None:intergenic | 50.0% | |
| CTGGAAGATTGCCAAGGGTA+TGG | - | chr3.1:53068174-53068193 | MS.gene008402:intron | 50.0% | |
| GACCTGCTTCACCTGAAGTA+GGG | + | chr3.1:53068086-53068105 | None:intergenic | 50.0% | |
| GGAAAATCCTTGCTACCTGC+AGG | + | chr3.1:53067934-53067953 | None:intergenic | 50.0% | |
| GTGAAGCAGGTCTTCCCAAT+GGG | - | chr3.1:53068094-53068113 | MS.gene008402:intron | 50.0% | |
| GTGTTGCATTGTTCTTCGGG+TGG | - | chr3.1:53067235-53067254 | MS.gene008402:CDS | 50.0% | |
| TGCATTGTTCTTCGGGTGGT+TGG | - | chr3.1:53067239-53067258 | MS.gene008402:CDS | 50.0% | |
| ! | GCAGTGCTGGGAAAGTTGAA+TGG | - | chr3.1:53065759-53065778 | MS.gene008402:CDS | 50.0% |
| !! | GGGTTTCTACAGCTTGTTGG+TGG | - | chr3.1:53068114-53068133 | MS.gene008402:intron | 50.0% |
| GGTGAAGCAGGTCTTCCCAA+TGG | - | chr3.1:53068093-53068112 | MS.gene008402:intron | 55.0% | |
| TACAGGTACTTGGACACCGC+CGG | - | chr3.1:53067180-53067199 | MS.gene008402:intron | 55.0% | |
| TCCCCTACTTCAGGTGAAGC+AGG | - | chr3.1:53068081-53068100 | MS.gene008402:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53065503 | 53068231 | 53065503 | ID=MS.gene008402 |
| chr3.1 | mRNA | 53065503 | 53068231 | 53065503 | ID=MS.gene008402.t1;Parent=MS.gene008402 |
| chr3.1 | exon | 53068193 | 53068231 | 53068193 | ID=MS.gene008402.t1.exon1;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53068193 | 53068231 | 53068193 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53067945 | 53068033 | 53067945 | ID=MS.gene008402.t1.exon2;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53067945 | 53068033 | 53067945 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53067719 | 53067857 | 53067719 | ID=MS.gene008402.t1.exon3;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53067719 | 53067857 | 53067719 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53067216 | 53067290 | 53067216 | ID=MS.gene008402.t1.exon4;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53067216 | 53067290 | 53067216 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53066629 | 53066750 | 53066629 | ID=MS.gene008402.t1.exon5;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53066629 | 53066750 | 53066629 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53066474 | 53066549 | 53066474 | ID=MS.gene008402.t1.exon6;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53066474 | 53066549 | 53066474 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53065737 | 53065796 | 53065737 | ID=MS.gene008402.t1.exon7;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53065737 | 53065796 | 53065737 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| chr3.1 | exon | 53065503 | 53065640 | 53065503 | ID=MS.gene008402.t1.exon8;Parent=MS.gene008402.t1 |
| chr3.1 | CDS | 53065503 | 53065640 | 53065503 | ID=cds.MS.gene008402.t1;Parent=MS.gene008402.t1 |
| Gene Sequence |
| Protein sequence |
