AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017935


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017935.t1 MTR_7g092380 98.909 275 3 0 1 275 1 275 0.0 556
MS.gene017935.t1 MTR_1g052110 76.426 263 61 1 10 271 26 288 1.17e-139 395
MS.gene017935.t1 MTR_3g027580 56.716 67 29 0 21 87 88 154 1.05e-15 77.0
MS.gene017935.t1 MTR_7g109340 50.746 67 33 0 21 87 25 91 5.15e-15 74.3
MS.gene017935.t1 MTR_7g112360 52.308 65 27 2 24 84 18 82 1.46e-14 68.9
MS.gene017935.t1 MTR_2g436560 44.898 98 47 4 24 119 106 198 2.17e-14 72.8
MS.gene017935.t1 MTR_1g110310 43.750 96 47 3 24 112 18 113 3.40e-14 72.4
MS.gene017935.t1 MTR_7g112360 52.308 65 27 2 24 84 18 82 4.69e-14 68.9
MS.gene017935.t1 MTR_4g023470 53.731 67 31 0 21 87 85 151 6.02e-14 71.6
MS.gene017935.t1 MTR_8g022310 37.736 106 56 3 16 115 4 105 8.16e-14 68.9
MS.gene017935.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 8.63e-14 68.9
MS.gene017935.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 1.09e-13 68.9
MS.gene017935.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 2.39e-13 68.2
MS.gene017935.t1 MTR_4g078850 47.692 65 33 1 24 87 6 70 1.55e-12 67.0
MS.gene017935.t1 MTR_7g069480 53.125 64 29 1 24 87 29 91 1.84e-12 67.4
MS.gene017935.t1 MTR_8g037810 51.562 64 31 0 24 87 8 71 2.30e-12 66.6
MS.gene017935.t1 MTR_2g014470 42.105 76 40 2 24 98 6 78 2.62e-12 66.2
MS.gene017935.t1 MTR_3g108020 43.077 65 36 1 24 87 6 70 3.47e-12 65.9
MS.gene017935.t1 MTR_5g004570 50.000 64 32 0 24 87 8 71 4.05e-12 65.1
MS.gene017935.t1 MTR_2g436580 34.783 115 64 3 24 136 112 217 4.31e-12 64.7
MS.gene017935.t1 MTR_5g035770 36.111 108 62 2 12 112 15 122 4.45e-12 65.9
MS.gene017935.t1 MTR_2g014480 46.154 65 34 1 24 87 6 70 8.21e-12 65.1
MS.gene017935.t1 MTR_2g090705 44.595 74 37 2 24 96 6 76 1.01e-11 64.7
MS.gene017935.t1 MTR_4g015840 44.615 65 35 1 24 87 6 70 2.46e-11 63.5
MS.gene017935.t1 MTR_5g065160 45.455 66 36 0 20 85 81 146 6.91e-11 62.4
MS.gene017935.t1 MTR_5g065160 45.455 66 36 0 20 85 80 145 7.16e-11 62.4
MS.gene017935.t1 MTR_3g087030 46.875 64 33 1 24 87 84 146 8.12e-11 62.4
MS.gene017935.t1 MTR_8g006430 33.133 166 91 6 1 158 1 154 8.22e-11 62.4
MS.gene017935.t1 MTR_5g065160 45.455 66 36 0 20 85 74 139 9.24e-11 62.4
MS.gene017935.t1 MTR_5g065160 45.455 66 36 0 20 85 81 146 9.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017935.t1 AT3G12170 73.251 243 64 1 20 261 9 251 1.01e-129 369
MS.gene017935.t1 AT3G12170 73.251 243 64 1 20 261 45 287 9.74e-129 367
MS.gene017935.t1 AT5G06910 64.894 282 87 4 1 270 1 282 4.67e-118 340
MS.gene017935.t1 AT5G48030 58.209 67 28 0 21 87 93 159 1.27e-15 76.6
MS.gene017935.t1 AT1G59980 40.625 96 50 2 24 112 25 120 5.67e-15 74.3
MS.gene017935.t1 AT1G59980 40.625 96 50 2 24 112 25 120 6.01e-15 74.7
MS.gene017935.t1 AT1G56300 47.826 69 32 2 20 84 11 79 1.39e-14 70.1
MS.gene017935.t1 AT1G56300 47.826 69 32 2 20 84 11 79 1.46e-14 68.9
MS.gene017935.t1 AT5G03160 50.685 73 35 1 20 91 368 440 2.42e-14 73.2
MS.gene017935.t1 AT3G14200 49.351 77 36 1 20 93 10 86 3.20e-14 70.9
MS.gene017935.t1 AT3G62600 50.746 67 33 0 21 87 25 91 4.40e-14 71.6
MS.gene017935.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene017935.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene017935.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene017935.t1 AT5G01390 46.970 66 34 1 23 87 5 70 2.56e-13 68.2
MS.gene017935.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.35e-13 69.3
MS.gene017935.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.35e-13 69.3
MS.gene017935.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.40e-13 68.9
MS.gene017935.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.40e-13 68.9
MS.gene017935.t1 AT5G01390 46.970 66 34 1 23 87 5 70 3.44e-13 67.8
MS.gene017935.t1 AT2G21510 50.000 64 32 0 24 87 8 71 4.10e-13 68.6
MS.gene017935.t1 AT1G68370 42.708 96 48 3 24 112 19 114 4.29e-13 68.9
MS.gene017935.t1 AT5G01390 46.970 66 34 1 23 87 5 70 4.99e-13 68.2
MS.gene017935.t1 AT5G49060 48.611 72 32 2 24 93 101 169 5.01e-13 68.6
MS.gene017935.t1 AT5G49060 48.611 72 32 2 24 93 101 169 5.01e-13 68.6
MS.gene017935.t1 AT5G01390 46.970 66 34 1 23 87 5 70 7.52e-13 68.2
MS.gene017935.t1 AT4G28480 41.975 81 43 2 24 103 6 83 1.32e-12 67.0
MS.gene017935.t1 AT4G28480 41.975 81 43 2 24 103 6 83 1.56e-12 67.0
MS.gene017935.t1 AT1G77020 51.562 64 31 0 24 87 8 71 1.87e-12 67.0
MS.gene017935.t1 AT1G21080 37.931 87 51 1 23 109 7 90 2.18e-12 67.0
MS.gene017935.t1 AT1G21080 37.931 87 51 1 23 109 7 90 2.21e-12 67.0
MS.gene017935.t1 AT3G08910 46.154 65 34 1 24 87 6 70 3.36e-12 65.9
MS.gene017935.t1 AT1G76700 48.438 64 33 0 24 87 8 71 4.71e-12 65.9
MS.gene017935.t1 AT5G16650 40.789 76 45 0 13 88 2 77 7.78e-12 61.6
MS.gene017935.t1 AT2G20560 36.792 106 61 3 24 128 6 106 9.54e-12 64.7
MS.gene017935.t1 AT5G25530 44.615 65 35 1 24 87 6 70 1.11e-11 64.7
MS.gene017935.t1 AT5G16650 40.789 76 45 0 13 88 2 77 2.54e-11 61.2
MS.gene017935.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.68e-11 63.9
MS.gene017935.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene017935.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene017935.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene017935.t1 AT4G39960 39.560 91 50 3 23 109 86 175 3.76e-11 63.5
MS.gene017935.t1 AT4G39960 39.560 91 50 3 23 109 86 175 3.76e-11 63.5
MS.gene017935.t1 AT3G08970 51.562 64 30 1 24 87 29 91 3.91e-11 63.5
MS.gene017935.t1 AT3G08970 51.562 64 30 1 24 87 29 91 3.91e-11 63.5
MS.gene017935.t1 AT1G59725 42.424 66 36 1 24 87 6 71 6.23e-11 62.4
MS.gene017935.t1 AT2G22360 48.438 64 32 1 24 87 88 150 7.38e-11 62.4

Find 50 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGCCTTCCTCTTTAA+AGG 0.137096 7.1:-15013186 None:intergenic
ATACTTCCTTAGCCCATTTC+TGG 0.179895 7.1:-15013140 None:intergenic
TAATTCTGCAGGAGAATTAA+AGG 0.256912 7.1:+15013104 MS.gene017935:intron
AAAGAAGGCTTATTACAAAT+TGG 0.280754 7.1:+15011310 MS.gene017935:CDS
CAACAAAAGCCTACCAGAAA+TGG 0.329929 7.1:+15013127 MS.gene017935:CDS
AATTCCTCTTCAGAGGGTTC+TGG 0.332420 7.1:-15013407 None:intergenic
TCATCACCAGGATTCTTATC+TGG 0.362396 7.1:-15011347 None:intergenic
ACTGACCTTTCCTCTCATTT+CGG 0.368205 7.1:-15013334 None:intergenic
TAAAGGACTTGTGGGTGGTT+TGG 0.373974 7.1:-15013169 None:intergenic
TTCCTCTTTAAAGGACTTGT+GGG 0.398805 7.1:-15013177 None:intergenic
TTTCTCTTCGTCTCCAAGAA+TGG 0.400542 7.1:-15011516 None:intergenic
ACTTGACTCACACCGATTCA+AGG 0.428801 7.1:+15012531 MS.gene017935:CDS
CTTCCTCTTTAAAGGACTTG+TGG 0.442578 7.1:-15013178 None:intergenic
ATCTTCAATTTCTTCATCAT+CGG 0.442588 7.1:-15010553 None:intergenic
TTCTTGGAGACGAAGAGAAA+CGG 0.455460 7.1:+15011519 MS.gene017935:CDS
GGTTCTTGGGTTGGAGAAAA+CGG 0.460667 7.1:+15011271 MS.gene017935:intron
TCTTGGAGACGAAGAGAAAC+GGG 0.461614 7.1:+15011520 MS.gene017935:CDS
GCGTCTCTAGTATCAAAGTA+TGG 0.472145 7.1:+15013371 MS.gene017935:CDS
TGGCGCCGAGGAAGAAAACT+AGG 0.485201 7.1:+15010526 MS.gene017935:CDS
AACAAAAGCCTACCAGAAAT+GGG 0.487122 7.1:+15013128 MS.gene017935:CDS
TTTCAAAACAATGTACAAGA+AGG 0.494913 7.1:+15012196 MS.gene017935:CDS
CATCAAGAATGTCCTTGAAT+CGG 0.509603 7.1:-15012543 None:intergenic
CTTCTTTATTTCTTGTTGAG+AGG 0.513111 7.1:-15011294 None:intergenic
CTCTTTAAAGGACTTGTGGG+TGG 0.519289 7.1:-15013174 None:intergenic
AGTACAAGGGGAATATGAAA+AGG 0.520113 7.1:+15012388 MS.gene017935:CDS
CTTGATGAGGCTATAGCTGC+TGG 0.521762 7.1:+15012559 MS.gene017935:CDS
CACCCACAAGTCCTTTAAAG+AGG 0.526019 7.1:+15013175 MS.gene017935:CDS
CTCCATCCAGATAAGAATCC+TGG 0.528887 7.1:+15011341 MS.gene017935:CDS
AGCTTCAAATTCCTCTTCAG+AGG 0.534350 7.1:-15013414 None:intergenic
CACCAGGATTCTTATCTGGA+TGG 0.539771 7.1:-15011343 None:intergenic
GGAGTTTGAAGCAAACTACC+GGG 0.541480 7.1:+15012323 MS.gene017935:CDS
CACAAGTCCTTTAAAGAGGA+AGG 0.544290 7.1:+15013179 MS.gene017935:CDS
GCTTCAAATTCCTCTTCAGA+GGG 0.547917 7.1:-15013413 None:intergenic
ACCTCAAAAGACTCTCTACC+AGG 0.549839 7.1:+15010578 MS.gene017935:CDS
AGGAGTTTGAAGCAAACTAC+CGG 0.550523 7.1:+15012322 MS.gene017935:CDS
TTCCTTAGCCCATTTCTGGT+AGG 0.565926 7.1:-15013136 None:intergenic
TCTGTTAATCAGGATCTGGC+AGG 0.566964 7.1:+15012149 MS.gene017935:intron
CTTATTACAAATTGGCATTG+CGG 0.571383 7.1:+15011318 MS.gene017935:CDS
AGCCTACCAGAAATGGGCTA+AGG 0.571998 7.1:+15013134 MS.gene017935:CDS
CTCTCAACAAGAAATAAAGA+AGG 0.577556 7.1:+15011295 MS.gene017935:CDS
GGTCACTGAAGCTGATATTG+AGG 0.586002 7.1:+15012302 MS.gene017935:intron
CGGGCTCTCTATGATCAGAC+TGG 0.592329 7.1:+15011539 MS.gene017935:CDS
TATCACAACGCCGAAATGAG+AGG 0.612937 7.1:+15013324 MS.gene017935:CDS
TATGCCAGAACCCTCTGAAG+AGG 0.616007 7.1:+15013403 MS.gene017935:CDS
ATTCAAGGACATTCTTGATG+AGG 0.621008 7.1:+15012546 MS.gene017935:CDS
AGATAAGAATCCTGGTGATG+AGG 0.625604 7.1:+15011349 MS.gene017935:CDS
CAACGCCGAAATGAGAGGAA+AGG 0.636406 7.1:+15013329 MS.gene017935:CDS
TCTCTAGTATCAAAGTATGG+TGG 0.654748 7.1:+15013374 MS.gene017935:CDS
GGCGCCGAGGAAGAAAACTA+GGG 0.675011 7.1:+15010527 MS.gene017935:CDS
GAGTTTGAAGCAAACTACCG+GGG 0.707683 7.1:+15012324 MS.gene017935:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTATTTGTTTGT+TGG + chr7.1:15011412-15011431 MS.gene017935:intron 10.0%
!! AACAATTAATACTCTTAAAT+TGG + chr7.1:15012932-15012951 MS.gene017935:intron 15.0%
!!! AATTTAAGAGTATTAATTGT+TGG - chr7.1:15012933-15012952 None:intergenic 15.0%
!!! TGCTTAAATTTATTATTTTG+CGG + chr7.1:15010995-15011014 MS.gene017935:intron 15.0%
!! ATCAGAATATAGGAATATAA+TGG + chr7.1:15011750-15011769 MS.gene017935:intron 20.0%
!!! AAGAAAGCATTATTAATTTG+TGG + chr7.1:15012412-15012431 MS.gene017935:intron 20.0%
!!! CCATAGAAAAGTATTTATAA+TGG - chr7.1:15013041-15013060 None:intergenic 20.0%
!!! CCATTATAAATACTTTTCTA+TGG + chr7.1:15013038-15013057 MS.gene017935:intron 20.0%
!!! GTCTGTTAAATTTTATTTGA+GGG + chr7.1:15011708-15011727 MS.gene017935:intron 20.0%
!!! TTAATTGATTTACTCTGTAA+TGG + chr7.1:15013238-15013257 MS.gene017935:intron 20.0%
! AAAGAAGGCTTATTACAAAT+TGG + chr7.1:15011310-15011329 MS.gene017935:CDS 25.0%
! AATACAAACTTTGTTCAACA+TGG - chr7.1:15010777-15010796 None:intergenic 25.0%
! AATTAGCATATTAACTCCTT+TGG + chr7.1:15012754-15012773 MS.gene017935:intron 25.0%
! ACATCATTATCTATGTTAAC+CGG - chr7.1:15012901-15012920 None:intergenic 25.0%
! ATAAAATTTAACAGACCACA+AGG - chr7.1:15011704-15011723 None:intergenic 25.0%
! ATACTACTGAATCAGAATAT+AGG + chr7.1:15011740-15011759 MS.gene017935:intron 25.0%
! ATCTTCAATTTCTTCATCAT+CGG - chr7.1:15010556-15010575 None:intergenic 25.0%
! ATTTGACCTATAAAAAGCAA+TGG - chr7.1:15013273-15013292 None:intergenic 25.0%
! CAAATGATCCATTGAAAAAA+AGG - chr7.1:15011138-15011157 None:intergenic 25.0%
! CATTAAACAAACAATCATCA+AGG - chr7.1:15013078-15013097 None:intergenic 25.0%
! CTTTCTTAGAAAAATACCAA+AGG - chr7.1:15012773-15012792 None:intergenic 25.0%
! TATGGGCATACATATATAAT+TGG - chr7.1:15011871-15011890 None:intergenic 25.0%
! TTAGAGAATAGATAAATGTC+CGG + chr7.1:15012879-15012898 MS.gene017935:intron 25.0%
! TTTAGTCAGATATTTGGTAT+AGG + chr7.1:15012616-15012635 MS.gene017935:intron 25.0%
! TTTCAAAACAATGTACAAGA+AGG + chr7.1:15012196-15012215 MS.gene017935:CDS 25.0%
! TTTGCTTAAATACCAAAATC+TGG + chr7.1:15013012-15013031 MS.gene017935:intron 25.0%
!! AAATAACTTTTTGCAATTGC+TGG - chr7.1:15011496-15011515 None:intergenic 25.0%
!! CAAAAAGTTATTTCCATTCT+TGG + chr7.1:15011503-15011522 MS.gene017935:CDS 25.0%
!! TAGGAATATAATGGTGTTAA+CGG + chr7.1:15011759-15011778 MS.gene017935:intron 25.0%
!! TTGATCTGTGAAATTTTCAA+TGG + chr7.1:15010898-15010917 MS.gene017935:intron 25.0%
!!! ATTTGTTTGTTGGCTTTTTT+GGG + chr7.1:15011422-15011441 MS.gene017935:intron 25.0%
!!! CTTTTTTTCAATGGATCATT+TGG + chr7.1:15011136-15011155 MS.gene017935:intron 25.0%
!!! GGTCTGTTAAATTTTATTTG+AGG + chr7.1:15011707-15011726 MS.gene017935:intron 25.0%
!!! GTCAAGAATTATTTTTGTTG+AGG - chr7.1:15011198-15011217 None:intergenic 25.0%
!!! TATTTGTTTGTTGGCTTTTT+TGG + chr7.1:15011421-15011440 MS.gene017935:intron 25.0%
!!! TGATTGCTTTGATTTTTTTG+AGG - chr7.1:15013468-15013487 None:intergenic 25.0%
!!! TGGTTAAACCTTTTTTTCAA+TGG + chr7.1:15011127-15011146 MS.gene017935:intron 25.0%
!!! TTGTATTTTTGTGTGTGTTA+AGG + chr7.1:15010790-15010809 MS.gene017935:intron 25.0%
ACAAGTGGAACAAATAACAA+TGG - chr7.1:15011170-15011189 None:intergenic 30.0%
ACCTAAAATGAAGTCAACAA+CGG - chr7.1:15011254-15011273 None:intergenic 30.0%
ATTAATCCGGCATAATATGT+TGG + chr7.1:15011644-15011663 MS.gene017935:intron 30.0%
ATTACAAAGTGGAAATTGAG+AGG - chr7.1:15011823-15011842 None:intergenic 30.0%
CATTATCTCTTCTGTTAATC+AGG + chr7.1:15012139-15012158 MS.gene017935:intron 30.0%
CTAAAAGCAAAATAACTGCA+AGG - chr7.1:15012722-15012741 None:intergenic 30.0%
CTCTCAACAAGAAATAAAGA+AGG + chr7.1:15011295-15011314 MS.gene017935:CDS 30.0%
CTGTTCAAGATGAATTAATC+CGG + chr7.1:15011631-15011650 MS.gene017935:intron 30.0%
CTTAACATGTTCATTCAGAT+GGG + chr7.1:15011901-15011920 MS.gene017935:intron 30.0%
CTTATTACAAATTGGCATTG+CGG + chr7.1:15011318-15011337 MS.gene017935:CDS 30.0%
GATTTACAATTTGAATGCCT+AGG + chr7.1:15011666-15011685 MS.gene017935:intron 30.0%
GGCATACATATATAATTGGA+AGG - chr7.1:15011867-15011886 None:intergenic 30.0%
GGTCTATGTTTCTTATAACT+AGG + chr7.1:15012953-15012972 MS.gene017935:intron 30.0%
GTAAATCCAACATATTATGC+CGG - chr7.1:15011653-15011672 None:intergenic 30.0%
GTAATTACTTGTGTTCATAC+AGG + chr7.1:15011454-15011473 MS.gene017935:intron 30.0%
TAATGTTCTCTTAATTCTGC+AGG + chr7.1:15013093-15013112 MS.gene017935:intron 30.0%
TAATTCTGCAGGAGAATTAA+AGG + chr7.1:15013104-15013123 MS.gene017935:intron 30.0%
TATCTGACTAAAACCTTGTT+CGG - chr7.1:15012608-15012627 None:intergenic 30.0%
TGTCCAAAATGCTAATTGTT+GGG - chr7.1:15012081-15012100 None:intergenic 30.0%
TTAATAGAACAAGCAAAACC+CGG - chr7.1:15013222-15013241 None:intergenic 30.0%
! AACCAGAGAACAAAGATTTT+TGG - chr7.1:15011062-15011081 None:intergenic 30.0%
! CTTCTTTATTTCTTGTTGAG+AGG - chr7.1:15011297-15011316 None:intergenic 30.0%
! TCTGTGAAATTTTCAATGGA+AGG + chr7.1:15010902-15010921 MS.gene017935:intron 30.0%
!! ATAGGTTCTAGATTTGTTCT+TGG + chr7.1:15011107-15011126 MS.gene017935:intron 30.0%
!! CAAGGTTTTAGTCAGATATT+TGG + chr7.1:15012610-15012629 MS.gene017935:intron 30.0%
!! CTTGCAGTTATTTTGCTTTT+AGG + chr7.1:15012720-15012739 MS.gene017935:intron 30.0%
!! TTATTTTGCGGCTAATTTCT+TGG + chr7.1:15011007-15011026 MS.gene017935:intron 30.0%
!! TTTACTTGGTCTTGATGATT+TGG - chr7.1:15012801-15012820 None:intergenic 30.0%
!!! ACTGATCCATTGCTTTTTAT+AGG + chr7.1:15013264-15013283 MS.gene017935:intron 30.0%
!!! CGAGTATTGTGAGTATTTTT+TGG - chr7.1:15012859-15012878 None:intergenic 30.0%
!!! GCATTAGTCATTTTTGTAAG+AGG + chr7.1:15012438-15012457 MS.gene017935:intron 30.0%
!!! TGACTTCATTTTAGGTTCTT+GGG + chr7.1:15011258-15011277 MS.gene017935:intron 30.0%
!!! TTATAATGGACTCCAGATTT+TGG - chr7.1:15013027-15013046 None:intergenic 30.0%
!!! TTGACTTCATTTTAGGTTCT+TGG + chr7.1:15011257-15011276 MS.gene017935:intron 30.0%
AAAAGCAAGTCAGTAGATAG+TGG + chr7.1:15012692-15012711 MS.gene017935:intron 35.0%
AAAGCAAGTCAGTAGATAGT+GGG + chr7.1:15012693-15012712 MS.gene017935:intron 35.0%
AACAAAAGCCTACCAGAAAT+GGG + chr7.1:15013128-15013147 MS.gene017935:CDS 35.0%
AGCGAAATGAAAATTTGCAG+AGG - chr7.1:15010632-15010651 None:intergenic 35.0%
AGTACAAGGGGAATATGAAA+AGG + chr7.1:15012388-15012407 MS.gene017935:CDS 35.0%
ATGTTAAGCGAGACAGAATA+TGG - chr7.1:15011889-15011908 None:intergenic 35.0%
ATTACTTGTGTTCATACAGG+AGG + chr7.1:15011457-15011476 MS.gene017935:intron 35.0%
ATTCAAGGACATTCTTGATG+AGG + chr7.1:15012546-15012565 MS.gene017935:CDS 35.0%
CAGAATCTCAGATTACAAAG+TGG - chr7.1:15011834-15011853 None:intergenic 35.0%
CATCAAGAATGTCCTTGAAT+CGG - chr7.1:15012546-15012565 None:intergenic 35.0%
GCACAGAAAAAGTTGGAAAA+GGG + chr7.1:15013437-15013456 MS.gene017935:CDS 35.0%
GCTTAACATGTTCATTCAGA+TGG + chr7.1:15011900-15011919 MS.gene017935:intron 35.0%
GTCCAAAAATCTTTGTTCTC+TGG + chr7.1:15011057-15011076 MS.gene017935:intron 35.0%
GTGTCCAAAATGCTAATTGT+TGG - chr7.1:15012082-15012101 None:intergenic 35.0%
TAAAAAATCACCTCATCACC+AGG - chr7.1:15011362-15011381 None:intergenic 35.0%
TACTTTGCCTTCCTCTTTAA+AGG - chr7.1:15013189-15013208 None:intergenic 35.0%
TCTCTAGTATCAAAGTATGG+TGG + chr7.1:15013374-15013393 MS.gene017935:CDS 35.0%
TGCACAGAAAAAGTTGGAAA+AGG + chr7.1:15013436-15013455 MS.gene017935:CDS 35.0%
TGTTAAGCGAGACAGAATAT+GGG - chr7.1:15011888-15011907 None:intergenic 35.0%
TTAGCATGTGTTTAGATGCA+CGG - chr7.1:15011229-15011248 None:intergenic 35.0%
! AGCTGTACAAAAAGTACAAG+GGG + chr7.1:15012376-15012395 MS.gene017935:CDS 35.0%
! ATGCCCAACAATTAGCATTT+TGG + chr7.1:15012075-15012094 MS.gene017935:intron 35.0%
! CTCCTTCAAATGCTTTTACT+TGG - chr7.1:15012815-15012834 None:intergenic 35.0%
! GAGCTGTACAAAAAGTACAA+GGG + chr7.1:15012375-15012394 MS.gene017935:CDS 35.0%
! TAACTAGATTTTGCCGAACA+AGG + chr7.1:15012592-15012611 MS.gene017935:intron 35.0%
! TGAGCTGTACAAAAAGTACA+AGG + chr7.1:15012374-15012393 MS.gene017935:CDS 35.0%
! TGTTCTCTGGTTTGATTGTT+TGG + chr7.1:15011070-15011089 MS.gene017935:intron 35.0%
! TTCCTCTTTAAAGGACTTGT+GGG - chr7.1:15013180-15013199 None:intergenic 35.0%
!! AAAGATTTTTGGACGCAGTT+TGG - chr7.1:15011051-15011070 None:intergenic 35.0%
!! GACCAAGTAAAAGCATTTGA+AGG + chr7.1:15012810-15012829 MS.gene017935:intron 35.0%
!! GTTGTTTTGTAATGAACCAC+AGG + chr7.1:15012281-15012300 MS.gene017935:intron 35.0%
!!! CTTGGTGTTGGATCTTTTTT+GGG + chr7.1:15011025-15011044 MS.gene017935:intron 35.0%
!!! GGTGATGAGGTGATTTTTTA+AGG + chr7.1:15011362-15011381 MS.gene017935:intron 35.0%
!!! TCCGTTGTTGACTTCATTTT+AGG + chr7.1:15011250-15011269 MS.gene017935:intron 35.0%
!!! TCTTGGTGTTGGATCTTTTT+TGG + chr7.1:15011024-15011043 MS.gene017935:intron 35.0%
!!! TTCATTTTAGGTTCTTGGGT+TGG + chr7.1:15011262-15011281 MS.gene017935:intron 35.0%
ACTGACCTTTCCTCTCATTT+CGG - chr7.1:15013337-15013356 None:intergenic 40.0%
AGCTTCAAATTCCTCTTCAG+AGG - chr7.1:15013417-15013436 None:intergenic 40.0%
ATACCACAATGCATCAGGAA+AGG - chr7.1:15012245-15012264 None:intergenic 40.0%
ATACTTCCTTAGCCCATTTC+TGG - chr7.1:15013143-15013162 None:intergenic 40.0%
ATAGGTCTTAGTTTCTACGC+AGG + chr7.1:15012634-15012653 MS.gene017935:intron 40.0%
CAACAAAAGCCTACCAGAAA+TGG + chr7.1:15013127-15013146 MS.gene017935:CDS 40.0%
CATGTATACCACAATGCATC+AGG - chr7.1:15012250-15012269 None:intergenic 40.0%
CTCTTCTGTTAATCAGGATC+TGG + chr7.1:15012145-15012164 MS.gene017935:intron 40.0%
GCGTCTCTAGTATCAAAGTA+TGG + chr7.1:15013371-15013390 MS.gene017935:CDS 40.0%
GCTTCAAATTCCTCTTCAGA+GGG - chr7.1:15013416-15013435 None:intergenic 40.0%
TACCACAATGCATCAGGAAA+GGG - chr7.1:15012244-15012263 None:intergenic 40.0%
TCATCACCAGGATTCTTATC+TGG - chr7.1:15011350-15011369 None:intergenic 40.0%
TGAAGCTGCACAGAAAAAGT+TGG + chr7.1:15013430-15013449 MS.gene017935:CDS 40.0%
TTCTTGGAGACGAAGAGAAA+CGG + chr7.1:15011519-15011538 MS.gene017935:CDS 40.0%
TTGGAATTGCACTTGCACAT+AGG + chr7.1:15011089-15011108 MS.gene017935:intron 40.0%
TTTCTCTTCGTCTCCAAGAA+TGG - chr7.1:15011519-15011538 None:intergenic 40.0%
TTTGTTGAGGAGTCAACAAG+TGG - chr7.1:15011185-15011204 None:intergenic 40.0%
! AGATAAGAATCCTGGTGATG+AGG + chr7.1:15011349-15011368 MS.gene017935:CDS 40.0%
! AGGAGTTTGAAGCAAACTAC+CGG + chr7.1:15012322-15012341 MS.gene017935:CDS 40.0%
! CACAAGTCCTTTAAAGAGGA+AGG + chr7.1:15013179-15013198 MS.gene017935:CDS 40.0%
! CTTCCTCTTTAAAGGACTTG+TGG - chr7.1:15013181-15013200 None:intergenic 40.0%
! GAAGGCTAGACTAGAGTATT+GGG + chr7.1:15010920-15010939 MS.gene017935:intron 40.0%
!! CAAGGACTTGCTAAAAACCT+AGG - chr7.1:15011686-15011705 None:intergenic 40.0%
!! GAAACCCTAGTTTTCTTCCT+CGG - chr7.1:15010534-15010553 None:intergenic 40.0%
!! GCAAAGTAAGTTGATCAACC+GGG + chr7.1:15013201-15013220 MS.gene017935:intron 40.0%
!! GGCAAAGTAAGTTGATCAAC+CGG + chr7.1:15013200-15013219 MS.gene017935:intron 40.0%
!! TGCATTGATGATGATGTGAG+TGG + chr7.1:15011563-15011582 MS.gene017935:intron 40.0%
!!! AGGTTTTTAGCAAGTCCTTG+TGG + chr7.1:15011686-15011705 MS.gene017935:intron 40.0%
!!! GTTTGTTGGCTTTTTTGGGT+TGG + chr7.1:15011426-15011445 MS.gene017935:intron 40.0%
AAGCGTGAATTTGCGATACC+TGG - chr7.1:15010599-15010618 None:intergenic 45.0%
AATTCCTCTTCAGAGGGTTC+TGG - chr7.1:15013410-15013429 None:intergenic 45.0%
ACCACAATGCATCAGGAAAG+GGG - chr7.1:15012243-15012262 None:intergenic 45.0%
ACCTCAAAAGACTCTCTACC+AGG + chr7.1:15010578-15010597 MS.gene017935:CDS 45.0%
AGCCTTGGTCTCTCAATCTA+GGG - chr7.1:15011797-15011816 None:intergenic 45.0%
ATATCAGCTTCAGTGACCTG+TGG - chr7.1:15012300-15012319 None:intergenic 45.0%
CACCAGGATTCTTATCTGGA+TGG - chr7.1:15011346-15011365 None:intergenic 45.0%
CTCCATCCAGATAAGAATCC+TGG + chr7.1:15011341-15011360 MS.gene017935:CDS 45.0%
GAAATTGAGAGGAAGAGCCT+TGG - chr7.1:15011812-15011831 None:intergenic 45.0%
GGAAGGCTAGACTAGAGTAT+TGG + chr7.1:15010919-15010938 MS.gene017935:intron 45.0%
GGTCACTGAAGCTGATATTG+AGG + chr7.1:15012302-15012321 MS.gene017935:intron 45.0%
TAAAGGACTTGTGGGTGGTT+TGG - chr7.1:15013172-15013191 None:intergenic 45.0%
TATCACAACGCCGAAATGAG+AGG + chr7.1:15013324-15013343 MS.gene017935:CDS 45.0%
TCTGTTAATCAGGATCTGGC+AGG + chr7.1:15012149-15012168 MS.gene017935:intron 45.0%
TCTTGGAGACGAAGAGAAAC+GGG + chr7.1:15011520-15011539 MS.gene017935:CDS 45.0%
! ACCTGGTAGAGAGTCTTTTG+AGG - chr7.1:15010582-15010601 None:intergenic 45.0%
! CACCCACAAGTCCTTTAAAG+AGG + chr7.1:15013175-15013194 MS.gene017935:CDS 45.0%
! CTCTTTAAAGGACTTGTGGG+TGG - chr7.1:15013177-15013196 None:intergenic 45.0%
! GAGTTTGAAGCAAACTACCG+GGG + chr7.1:15012324-15012343 MS.gene017935:CDS 45.0%
! GGAGTTTGAAGCAAACTACC+GGG + chr7.1:15012323-15012342 MS.gene017935:CDS 45.0%
! TGCGGCTAATTTCTTGGTGT+TGG + chr7.1:15011013-15011032 MS.gene017935:intron 45.0%
! TTTTCTCTGAGTCAGAACCC+CGG - chr7.1:15012344-15012363 None:intergenic 45.0%
!! ACTTGACTCACACCGATTCA+AGG + chr7.1:15012531-15012550 MS.gene017935:CDS 45.0%
!! GATGATGTGAGTGGTGTTGT+TGG + chr7.1:15011572-15011591 MS.gene017935:intron 45.0%
!! GGTTCTTGGGTTGGAGAAAA+CGG + chr7.1:15011271-15011290 MS.gene017935:intron 45.0%
!! TAAGGCTGCTTGTTATGCTG+TGG + chr7.1:15011380-15011399 MS.gene017935:intron 45.0%
!! TTCCTTAGCCCATTTCTGGT+AGG - chr7.1:15013139-15013158 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTATGT+TGG + chr7.1:15010698-15010717 MS.gene017935:intron 5.0%
CAACGCCGAAATGAGAGGAA+AGG + chr7.1:15013329-15013348 MS.gene017935:CDS 50.0%
CTTGATGAGGCTATAGCTGC+TGG + chr7.1:15012559-15012578 MS.gene017935:CDS 50.0%
GAGCCTTGGTCTCTCAATCT+AGG - chr7.1:15011798-15011817 None:intergenic 50.0%
GAGGCTATAGCTGCTGGTAA+GGG + chr7.1:15012565-15012584 MS.gene017935:intron 50.0%
GCCTTGGTCTCTCAATCTAG+GGG - chr7.1:15011796-15011815 None:intergenic 50.0%
TCCCCTTTCCTGATGCATTG+TGG + chr7.1:15012239-15012258 MS.gene017935:intron 50.0%
TGAGGCTATAGCTGCTGGTA+AGG + chr7.1:15012564-15012583 MS.gene017935:intron 50.0%
! TATGCCAGAACCCTCTGAAG+AGG + chr7.1:15013403-15013422 MS.gene017935:CDS 50.0%
!! AGCCTACCAGAAATGGGCTA+AGG + chr7.1:15013134-15013153 MS.gene017935:CDS 50.0%
CGGGCTCTCTATGATCAGAC+TGG + chr7.1:15011539-15011558 MS.gene017935:CDS 55.0%
GCCCCTAGATTGAGAGACCA+AGG + chr7.1:15011792-15011811 MS.gene017935:intron 55.0%
! GGCGCCGAGGAAGAAAACTA+GGG + chr7.1:15010527-15010546 MS.gene017935:CDS 55.0%
! TGGCGCCGAGGAAGAAAACT+AGG + chr7.1:15010526-15010545 MS.gene017935:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 15010525 15013499 15010525 ID=MS.gene017935
chr7.1 mRNA 15010525 15013499 15010525 ID=MS.gene017935.t1;Parent=MS.gene017935
chr7.1 exon 15010525 15010599 15010525 ID=MS.gene017935.t1.exon1;Parent=MS.gene017935.t1
chr7.1 CDS 15010525 15010599 15010525 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15011272 15011370 15011272 ID=MS.gene017935.t1.exon2;Parent=MS.gene017935.t1
chr7.1 CDS 15011272 15011370 15011272 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15011476 15011577 15011476 ID=MS.gene017935.t1.exon3;Parent=MS.gene017935.t1
chr7.1 CDS 15011476 15011577 15011476 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15012161 15012217 15012161 ID=MS.gene017935.t1.exon4;Parent=MS.gene017935.t1
chr7.1 CDS 15012161 15012217 15012161 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15012303 15012409 15012303 ID=MS.gene017935.t1.exon5;Parent=MS.gene017935.t1
chr7.1 CDS 15012303 15012409 15012303 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15012498 15012580 15012498 ID=MS.gene017935.t1.exon6;Parent=MS.gene017935.t1
chr7.1 CDS 15012498 15012580 15012498 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15013115 15013205 15013115 ID=MS.gene017935.t1.exon7;Parent=MS.gene017935.t1
chr7.1 CDS 15013115 15013205 15013115 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
chr7.1 exon 15013286 15013499 15013286 ID=MS.gene017935.t1.exon8;Parent=MS.gene017935.t1
chr7.1 CDS 15013286 15013499 15013286 ID=cds.MS.gene017935.t1;Parent=MS.gene017935.t1
Gene Sequence

>MS.gene017935

ATGGCGCCGAGGAAGAAAACTAGGGTTTCCGATGATGAAGAAATTGAAGATCAACCTCAAAAGACTCTCTACCAGGTATCGCAAATTCACGCTTTATTATCTTGCCTCTGCAAATTTTCATTTCGCTCTTTTTCTCAGAATATTTTTTAGTTTATTCTTTGCGTCTGAATGTTTTTTTTTTTTTTTTTTATGTTGGTTTTTTGTTCTACAATAGTGATTTGATTCTTTTTTTTCTTTGTTTATATATGACCATGTTGAACAAAGTTTGTATTTTTGTGTGTGTTAAGGTGAGTGTTTATCAAATGAGATTTTGAGTGATTTTTGTAAAATTGATTCTTTTAAATTGAGTTGAATTGAAGTGATTTATTATTCTTTGATCTGTGAAATTTTCAATGGAAGGCTAGACTAGAGTATTGGGAATGAATCAGTGATTTATGTTTTGATTCGAAGAAATAAGCTCATTTTGTAACTGCTTAAATTTATTATTTTGCGGCTAATTTCTTGGTGTTGGATCTTTTTTGGGCCAAACTGCGTCCAAAAATCTTTGTTCTCTGGTTTGATTGTTTGGAATTGCACTTGCACATAGGTTCTAGATTTGTTCTTGGTTAAACCTTTTTTTCAATGGATCATTTGGTTTAGTTGCCATTGTTATTTGTTCCACTTGTTGACTCCTCAACAAAAATAATTCTTGACATCTTCAACCGTGCATCTAAACACATGCTAAATCCGTTGTTGACTTCATTTTAGGTTCTTGGGTTGGAGAAAACGGCCTCTCAACAAGAAATAAAGAAGGCTTATTACAAATTGGCATTGCGGCTCCATCCAGATAAGAATCCTGGTGATGAGGTGATTTTTTAAGGCTGCTTGTTATGCTGTGGATTGCGTTTATATTTTATTATTTGTTTGTTGGCTTTTTTGGGTTGGTAATTGTAATTACTTGTGTTCATACAGGAGGCTAAAGAGAAATTCCAGCAATTGCAAAAAGTTATTTCCATTCTTGGAGACGAAGAGAAACGGGCTCTCTATGATCAGACTGGTTGCATTGATGATGATGTGAGTGGTGTTGTTGGTGCTAGTACTATTGTTGTTTTTTATTAATTCGTTTGCTGTTCAAGATGAATTAATCCGGCATAATATGTTGGATTTACAATTTGAATGCCTAGGTTTTTAGCAAGTCCTTGTGGTCTGTTAAATTTTATTTGAGGGAATTATCTAATACTACTGAATCAGAATATAGGAATATAATGGTGTTAACGGACTAAAAGTAGCCCCTAGATTGAGAGACCAAGGCTCTTCCTCTCAATTTCCACTTTGTAATCTGAGATTCTGTCTATTTTTTCCTTCCAATTATATATGTATGCCCATATTCTGTCTCGCTTAACATGTTCATTCAGATGGGTTGCTTCACACTTTTCTCATAAGAACTTTTAAGTCTTGCTAATGAGTTCTTTAAGAACACTAGTTAATGAGCATTTGATTTCTCTATTGAATGCTTTTAACTACTTAAAATATGTAAGTATCAAATGTTTTTTGAGTTACTAGTATAGTAAATGCCCAACAATTAGCATTTTGGACACTTTAAACAGTTTAGCTATGTTGCAGACATCTATGACTCATTATCTCTTCTGTTAATCAGGATCTGGCAGGAGATGTTCAGAATCTTCACGCATTTTTCAAAACAATGTACAAGAAGGTATTTGTTGAATATTTGCTATCCCCTTTCCTGATGCATTGTGGTATACATGTTTTTATATGCGTTGTTTTGTAATGAACCACAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTACCGGGGTTCTGACTCAGAGAAAAATGATTTGATTGAGCTGTACAAAAAGTACAAGGGGAATATGAAAAGGTAAGAAAGCATTATTAATTTGTGGTGTGCATTAGTCATTTTTGTAAGAGGCTTTGAATGTGTTATCTGAAGTAAATTCTCTTTGCAGACTTTTTTGTTCAATGCTTTGTTCAGATGCTAAACTTGACTCACACCGATTCAAGGACATTCTTGATGAGGCTATAGCTGCTGGTAAGGGACATTAACTAGATTTTGCCGAACAAGGTTTTAGTCAGATATTTGGTATAGGTCTTAGTTTCTACGCAGGAGAAGATATATGTTGAATCTGAACTGTTACACTAGAAAAGCAAGTCAGTAGATAGTGGGAGACCTTGCAGTTATTTTGCTTTTAGGCTTTAGCGCAGAATTAGCATATTAACTCCTTTGGTATTTTTCTAAGAAAGAAAGACCAAATCATCAAGACCAAGTAAAAGCATTTGAAGGAGTTAATGTTAATTTTTTTTTCGCCAAAAAATACTCACAATACTCGTTAGAGAATAGATAAATGTCCGGTTAACATAGATAATGATGTAAAAGAGTTCCAACAATTAATACTCTTAAATTGGTCTATGTTTCTTATAACTAGGATAAAAAGTAACATGTTTTTTTTATAACAAAGACTGTTTGCTTAAATACCAAAATCTGGAGTCCATTATAAATACTTTTCTATGGTTGTTAAGCATCTTCCTTGATGATTGTTTGTTTAATGTTCTCTTAATTCTGCAGGAGAATTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCAGAAACCAAACCACCCACAAGTCCTTTAAAGAGGAAGGCAAAGTAAGTTGATCAACCGGGTTTTGCTTGTTCTATTAATTGATTTACTCTGTAATGGATGACTGATCCATTGCTTTTTATAGGTCAAATAAGCAGTCTGAAACAGATCTGTGTGCAATCATATCACAACGCCGAAATGAGAGGAAAGGTCAGTTTGATTCAATGTTTGCGTCTCTAGTATCAAAGTATGGTGGAAGTGATATGCCAGAACCCTCTGAAGAGGAATTTGAAGCTGCACAGAAAAAGTTGGAAAAGGGAAGATCCTCAAAAAAATCAAAGCAATCAAAGCGAAAGTAA

Protein sequence

>MS.gene017935.t1

MAPRKKTRVSDDEEIEDQPQKTLYQVLGLEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCIDDDDLAGDVQNLHAFFKTMYKKVTEADIEEFEANYRGSDSEKNDLIELYKKYKGNMKRLFCSMLCSDAKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSETKPPTSPLKRKAKSNKQSETDLCAIISQRRNERKGQFDSMFASLVSKYGGSDMPEPSEEEFEAAQKKLEKGRSSKKSKQSKRK