Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019925.t1 | XP_013451665.1 | 99.2 | 385 | 2 | 1 | 1 | 385 | 31 | 414 | 5.70E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019925.t1 | O82030 | 82.0 | 373 | 67 | 0 | 9 | 381 | 37 | 409 | 1.8e-180 | 633.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019925.t1 | A0A072U7F9 | 99.2 | 385 | 2 | 1 | 1 | 385 | 1 | 384 | 4.1e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030337 | MS.gene019925 | PPI |
| MS.gene019925 | MS.gene00843 | PPI |
| MS.gene01884 | MS.gene019925 | PPI |
| MS.gene019925 | MS.gene05967 | PPI |
| MS.gene20137 | MS.gene019925 | PPI |
| MS.gene019925 | MS.gene002926 | PPI |
| MS.gene047966 | MS.gene019925 | PPI |
| MS.gene019925 | MS.gene66388 | PPI |
| MS.gene049052 | MS.gene019925 | PPI |
| MS.gene019925 | MS.gene049051 | PPI |
| MS.gene019925 | MS.gene015841 | PPI |
| MS.gene019925 | MS.gene063343 | PPI |
| MS.gene019925 | MS.gene75024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019925.t1 | MTR_6g033540 | 99.221 | 385 | 2 | 1 | 1 | 385 | 31 | 414 | 0.0 | 779 |
| MS.gene019925.t1 | MTR_6g033540 | 99.221 | 385 | 2 | 1 | 1 | 385 | 1 | 384 | 0.0 | 778 |
| MS.gene019925.t1 | MTR_6g033600 | 94.656 | 262 | 13 | 1 | 118 | 379 | 53 | 313 | 1.21e-180 | 504 |
| MS.gene019925.t1 | MTR_3g072670 | 25.743 | 303 | 186 | 13 | 102 | 374 | 138 | 431 | 3.56e-14 | 73.9 |
| MS.gene019925.t1 | MTR_3g072680 | 23.793 | 290 | 187 | 11 | 111 | 374 | 107 | 388 | 9.49e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019925.t1 | AT5G10330 | 82.873 | 362 | 62 | 0 | 23 | 384 | 55 | 416 | 0.0 | 630 |
| MS.gene019925.t1 | AT5G10330 | 82.873 | 362 | 62 | 0 | 23 | 384 | 55 | 416 | 0.0 | 630 |
| MS.gene019925.t1 | AT1G71920 | 82.873 | 362 | 62 | 0 | 23 | 384 | 55 | 416 | 0.0 | 630 |
| MS.gene019925.t1 | AT1G71920 | 82.873 | 362 | 62 | 0 | 23 | 384 | 55 | 416 | 0.0 | 630 |
| MS.gene019925.t1 | AT5G10330 | 83.056 | 360 | 61 | 0 | 25 | 384 | 2 | 361 | 0.0 | 626 |
| MS.gene019925.t1 | AT5G10330 | 83.056 | 360 | 61 | 0 | 25 | 384 | 2 | 361 | 0.0 | 626 |
| MS.gene019925.t1 | AT1G71920 | 83.056 | 360 | 61 | 0 | 25 | 384 | 2 | 361 | 0.0 | 626 |
| MS.gene019925.t1 | AT1G71920 | 82.044 | 362 | 63 | 1 | 23 | 384 | 55 | 414 | 0.0 | 621 |
| MS.gene019925.t1 | AT5G10330 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
| MS.gene019925.t1 | AT5G10330 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
| MS.gene019925.t1 | AT5G10330 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
| MS.gene019925.t1 | AT5G10330 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
| MS.gene019925.t1 | AT1G71920 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
| MS.gene019925.t1 | AT1G71920 | 82.178 | 303 | 54 | 0 | 82 | 384 | 1 | 303 | 0.0 | 524 |
Find 102 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTACCTTTAGCTTCTT+TGG | 0.194832 | 6.1:-13311558 | None:intergenic |
| ACAAACCTCAAAAGGCAAAA+TGG | 0.253126 | 6.1:-13304960 | None:intergenic |
| GTTGATAAGGAGCCAATTTC+CGG | 0.258409 | 6.1:-13304937 | None:intergenic |
| GAATTTGACGCTGCAGTTAA+TGG | 0.265110 | 6.1:+13307306 | MS.gene019925:CDS |
| TGAGTATAATCAAATATCTT+TGG | 0.283120 | 6.1:+13310980 | MS.gene019925:CDS |
| GCCGGACTTCGAGTGGGATA+TGG | 0.283282 | 6.1:+13310946 | MS.gene019925:CDS |
| GCAGCTCTCGCCCAAGATTC+AGG | 0.305014 | 6.1:+13307042 | MS.gene019925:CDS |
| TACCTCCCATCTGGATTGTT+TGG | 0.305845 | 6.1:-13307573 | None:intergenic |
| CAGACAGCATCTCCGGAAAT+TGG | 0.311423 | 6.1:+13304925 | MS.gene019925:CDS |
| TTCATCCAGCACCACCAGTA+TGG | 0.313584 | 6.1:-13310002 | None:intergenic |
| GAATCTGAATATATTCTTGT+AGG | 0.316423 | 6.1:+13307069 | MS.gene019925:CDS |
| TCCACGTTCAAGCTGAAATC+TGG | 0.326703 | 6.1:-13307495 | None:intergenic |
| GCACGCAATCGGCGGCTCTC+TGG | 0.338634 | 6.1:-13307021 | None:intergenic |
| CAGATTCAAGGCCTGAATCT+TGG | 0.339126 | 6.1:-13307053 | None:intergenic |
| GATGCTAATGAAAATCCTTA+TGG | 0.339478 | 6.1:+13306309 | MS.gene019925:CDS |
| GCAGCAACAGATACATTATA+CGG | 0.348600 | 6.1:-13311015 | None:intergenic |
| ACAGGAAGACCTAGCAGAAA+TGG | 0.371399 | 6.1:+13312276 | MS.gene019925:intron |
| AGTCAACAATGGTCCTCTTC+AGG | 0.378091 | 6.1:+13304877 | MS.gene019925:CDS |
| GATACTTGAGCTTCCCATAC+TGG | 0.393982 | 6.1:+13309988 | MS.gene019925:CDS |
| GGGCGAGAGCTGCACGCAAT+CGG | 0.396607 | 6.1:-13307032 | None:intergenic |
| ATTCTTTGCGAGGTTACATC+TGG | 0.399565 | 6.1:+13311528 | MS.gene019925:CDS |
| CAAGAATATATTCAGATTCA+AGG | 0.402850 | 6.1:-13307065 | None:intergenic |
| TGTGACAATGGCTTCTTCAA+TGG | 0.403480 | 6.1:+13304832 | None:intergenic |
| AATGGCTTGGAAATGGCTTA+AGG | 0.404237 | 6.1:-13311497 | None:intergenic |
| CCGGAGATGCTGTCTGATAA+AGG | 0.408007 | 6.1:-13304918 | None:intergenic |
| AAATTAGAATGGCTTGGAAA+TGG | 0.411601 | 6.1:-13311504 | None:intergenic |
| TCTGGATCCGGATAGACATA+TGG | 0.414258 | 6.1:-13307003 | None:intergenic |
| AAGCTGAAATCTGGCCTCCT+TGG | 0.422105 | 6.1:-13307486 | None:intergenic |
| CAAACCTCAAAAGGCAAAAT+GGG | 0.426236 | 6.1:-13304959 | None:intergenic |
| ACAGAATGTCAAAGATGCTT+TGG | 0.430908 | 6.1:+13311428 | MS.gene019925:intron |
| CCTCTTCAGGTTACTACTAC+TGG | 0.433352 | 6.1:+13304890 | MS.gene019925:CDS |
| AGATTCAAGGCCTGAATCTT+GGG | 0.434045 | 6.1:-13307052 | None:intergenic |
| TACAGTTGTGTTCTTGATCC+CGG | 0.436182 | 6.1:+13307243 | MS.gene019925:intron |
| AATCGGCGGCTCTCTGGATC+CGG | 0.439573 | 6.1:-13307015 | None:intergenic |
| AATTCATACATTGTGAAAGT+TGG | 0.444877 | 6.1:-13307288 | None:intergenic |
| TTGACTTGTTCAACAGAAGA+AGG | 0.450183 | 6.1:-13304860 | None:intergenic |
| CTAGATAGTTACCTCCCATC+TGG | 0.450643 | 6.1:-13307582 | None:intergenic |
| TCCATATCCCACTCGAAGTC+CGG | 0.459541 | 6.1:-13310947 | None:intergenic |
| ATAAGCACATCTGTGTGTTC+AGG | 0.460091 | 6.1:-13312364 | None:intergenic |
| AAGAGACAACAAACCTCAAA+AGG | 0.465952 | 6.1:-13304968 | None:intergenic |
| ATGACAATCTGATTGTTCTT+CGG | 0.466193 | 6.1:+13310077 | MS.gene019925:CDS |
| AAAGGCAAAATGGGTTGATA+AGG | 0.472832 | 6.1:-13304950 | None:intergenic |
| CGCAAAGAATGAAATTAGAA+TGG | 0.477198 | 6.1:-13311515 | None:intergenic |
| GCTTCCCATACTGGTGGTGC+TGG | 0.484303 | 6.1:+13309997 | MS.gene019925:CDS |
| ATTAATTTCTCAGGTTTAGC+CGG | 0.486982 | 6.1:+13310928 | MS.gene019925:intron |
| ACGATTCCCATATGTCTATC+CGG | 0.490034 | 6.1:+13306996 | MS.gene019925:CDS |
| CCTTTATCAGACAGCATCTC+CGG | 0.491022 | 6.1:+13304918 | MS.gene019925:CDS |
| CAATTGAATCAAAGATGAGT+TGG | 0.500291 | 6.1:+13310044 | MS.gene019925:CDS |
| CAGGAAGACCTAGCAGAAAT+GGG | 0.503599 | 6.1:+13312277 | MS.gene019925:intron |
| CGAGAGCTGCACGCAATCGG+CGG | 0.506362 | 6.1:-13307029 | None:intergenic |
| TCATACATTGTGAAAGTTGG+AGG | 0.507938 | 6.1:-13307285 | None:intergenic |
| TCAGCTCTTTATTGCTGTAG+TGG | 0.514039 | 6.1:-13312312 | None:intergenic |
| CAGGCTTCCCAACGGATACT+CGG | 0.518648 | 6.1:-13312345 | None:intergenic |
| AATTGAATCAAAGATGAGTT+GGG | 0.520370 | 6.1:+13310045 | MS.gene019925:CDS |
| CTTGGAAATGGCTTAAGGAA+TGG | 0.520893 | 6.1:-13311492 | None:intergenic |
| GGAATGGAACTGCCTTCAAA+AGG | 0.523912 | 6.1:-13311476 | None:intergenic |
| CTGGATCCGGATAGACATAT+GGG | 0.524963 | 6.1:-13307002 | None:intergenic |
| GAACGTGGAACAAATAATAG+AGG | 0.527144 | 6.1:+13307509 | MS.gene019925:CDS |
| ATGGGAATCGTATTGACCCT+AGG | 0.533354 | 6.1:-13306984 | None:intergenic |
| AGGTTTAGCCGGACTTCGAG+TGG | 0.533703 | 6.1:+13310939 | MS.gene019925:intron |
| TGATAGGTCATGGAAGCCCT+AGG | 0.540736 | 6.1:+13306967 | MS.gene019925:intron |
| ATTAAATGGCTCACCTCTGG+AGG | 0.543452 | 6.1:-13306336 | None:intergenic |
| GGCTACGTCCGAGTATCCGT+TGG | 0.543628 | 6.1:+13312337 | MS.gene019925:CDS |
| GATGCTTTGGTGAAAGAAAG+AGG | 0.548361 | 6.1:+13311441 | MS.gene019925:CDS |
| AGAATGAAATTAGAATGGCT+TGG | 0.553255 | 6.1:-13311510 | None:intergenic |
| TCATCCAGCACCACCAGTAT+GGG | 0.555180 | 6.1:-13310001 | None:intergenic |
| AGTTGATCCAAAGAAGCTAA+AGG | 0.557843 | 6.1:+13311551 | MS.gene019925:CDS |
| TTATTTAAACTGTAGTTCCA+AGG | 0.559966 | 6.1:+13307469 | MS.gene019925:intron |
| TTCTAATTTCATTCTTTGCG+AGG | 0.560446 | 6.1:+13311518 | MS.gene019925:CDS |
| AAATGGCTCACCTCTGGAGG+GGG | 0.562961 | 6.1:-13306333 | None:intergenic |
| ACATCTCCAAACAATCCAGA+TGG | 0.563258 | 6.1:+13307567 | MS.gene019925:CDS |
| GCTACGTCCGAGTATCCGTT+GGG | 0.565723 | 6.1:+13312338 | MS.gene019925:CDS |
| ACAGTCGACAATCTTGTCAC+CGG | 0.571106 | 6.1:-13307262 | None:intergenic |
| TTAAATGGCTCACCTCTGGA+GGG | 0.574585 | 6.1:-13306335 | None:intergenic |
| AATGGAGCACTTGTCATCAA+AGG | 0.576124 | 6.1:+13307324 | MS.gene019925:CDS |
| CAGTCGACAATCTTGTCACC+GGG | 0.578075 | 6.1:-13307261 | None:intergenic |
| ATGCTTTGGTGAAAGAAAGA+GGG | 0.578153 | 6.1:+13311442 | MS.gene019925:CDS |
| TGGGAATCGTATTGACCCTA+GGG | 0.582341 | 6.1:-13306983 | None:intergenic |
| CCAGTAGTAGTAACCTGAAG+AGG | 0.582578 | 6.1:-13304890 | None:intergenic |
| GCCAGATTTCAGCTTGAACG+TGG | 0.583579 | 6.1:+13307494 | MS.gene019925:CDS |
| AGCTTATTGATTTGATCATG+CGG | 0.587401 | 6.1:+13307106 | MS.gene019925:CDS |
| AGATATTTGATTATACTCAA+AGG | 0.589484 | 6.1:-13310976 | None:intergenic |
| TCTAACTTGACAATATCCTC+AGG | 0.589857 | 6.1:-13306288 | None:intergenic |
| TCATCACACCCATTTCTGCT+AGG | 0.591741 | 6.1:-13312285 | None:intergenic |
| GATCAAATCAATAAGCTCAT+CGG | 0.594362 | 6.1:-13307100 | None:intergenic |
| CGGACATTCAGCAAAAGAGC+TGG | 0.598755 | 6.1:+13310097 | MS.gene019925:CDS |
| TAAATGGCTCACCTCTGGAG+GGG | 0.601963 | 6.1:-13306334 | None:intergenic |
| GGTTTAGCCGGACTTCGAGT+GGG | 0.603708 | 6.1:+13310940 | MS.gene019925:intron |
| TTGCATAAGCAAACTATCGT+AGG | 0.606473 | 6.1:+13312390 | MS.gene019925:CDS |
| GCAAAATCCTACCTATCTAG+AGG | 0.607359 | 6.1:+13311062 | MS.gene019925:CDS |
| CATCTCCAAACAATCCAGAT+GGG | 0.627007 | 6.1:+13307568 | MS.gene019925:CDS |
| GATAGGTCATGGAAGCCCTA+GGG | 0.627430 | 6.1:+13306968 | MS.gene019925:intron |
| GAATATATTCTTGTAGGATG+TGG | 0.628826 | 6.1:+13307075 | MS.gene019925:CDS |
| TCTGTTGAACAAGTCAACAA+TGG | 0.628910 | 6.1:+13304866 | MS.gene019925:CDS |
| CTTTGGTGAAAGAAAGAGGG+AGG | 0.635099 | 6.1:+13311445 | MS.gene019925:CDS |
| TCGTCTTGGACGCAAGCCTG+AGG | 0.638192 | 6.1:+13306272 | MS.gene019925:CDS |
| ACTTGTTCAACAGAAGAAGG+AGG | 0.656267 | 6.1:-13304857 | None:intergenic |
| TACAGCAATAAAGAGCTGAA+AGG | 0.663054 | 6.1:+13312316 | MS.gene019925:CDS |
| CTCCAAACAATCCAGATGGG+AGG | 0.665608 | 6.1:+13307571 | MS.gene019925:CDS |
| TTTAAACTGTAGTTCCAAGG+AGG | 0.667891 | 6.1:+13307472 | MS.gene019925:intron |
| ACTTGAGCTTCCCATACTGG+TGG | 0.673821 | 6.1:+13309991 | MS.gene019925:CDS |
| TGTGTGTTCAGGCTTCCCAA+CGG | 0.684077 | 6.1:-13312353 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 13304839 | 13312411 | 13304839 | ID=MS.gene019925 |
| chr6.1 | mRNA | 13304839 | 13312411 | 13304839 | ID=MS.gene019925.t1;Parent=MS.gene019925 |
| chr6.1 | exon | 13304839 | 13304976 | 13304839 | ID=MS.gene019925.t1.exon1;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13304839 | 13304976 | 13304839 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13306261 | 13306344 | 13306261 | ID=MS.gene019925.t1.exon2;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13306261 | 13306344 | 13306261 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13306973 | 13307127 | 13306973 | ID=MS.gene019925.t1.exon3;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13306973 | 13307127 | 13306973 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13307248 | 13307345 | 13307248 | ID=MS.gene019925.t1.exon4;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13307248 | 13307345 | 13307248 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13307484 | 13307592 | 13307484 | ID=MS.gene019925.t1.exon5;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13307484 | 13307592 | 13307484 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13309961 | 13310118 | 13309961 | ID=MS.gene019925.t1.exon6;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13309961 | 13310118 | 13309961 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13310941 | 13311083 | 13310941 | ID=MS.gene019925.t1.exon7;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13310941 | 13311083 | 13310941 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13311432 | 13311572 | 13311432 | ID=MS.gene019925.t1.exon8;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13311432 | 13311572 | 13311432 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| chr6.1 | exon | 13312280 | 13312411 | 13312280 | ID=MS.gene019925.t1.exon9;Parent=MS.gene019925.t1 |
| chr6.1 | CDS | 13312280 | 13312411 | 13312280 | ID=cds.MS.gene019925.t1;Parent=MS.gene019925.t1 |
| Gene Sequence |
| Protein sequence |