AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020548


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020548.t1 MTR_1g061050 87.151 358 44 1 1 356 1 358 0.0 647
MS.gene020548.t1 MTR_5g069055 85.196 358 51 1 1 356 1 358 0.0 633
MS.gene020548.t1 MTR_5g069050 79.050 358 58 2 1 356 42 384 0.0 575
MS.gene020548.t1 MTR_5g096670 77.654 358 77 2 1 356 1 357 0.0 563
MS.gene020548.t1 MTR_4g057670 55.966 352 148 5 8 356 53 400 7.68e-133 385
MS.gene020548.t1 MTR_4g071860 55.966 352 148 5 8 356 53 400 1.23e-132 384
MS.gene020548.t1 MTR_1g109200 53.652 356 158 5 4 356 40 391 3.10e-130 378
MS.gene020548.t1 MTR_4g071880 50.708 353 153 6 8 356 51 386 4.96e-114 337
MS.gene020548.t1 MTR_7g103920 72.826 92 0 1 114 205 15 81 1.39e-37 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020548.t1 AT2G36460 86.313 358 47 1 1 356 1 358 0.0 644
MS.gene020548.t1 AT3G52930 87.151 358 44 1 1 356 1 358 0.0 642
MS.gene020548.t1 AT5G03690 83.008 359 58 2 1 356 1 359 0.0 610
MS.gene020548.t1 AT5G03690 83.381 349 55 2 11 356 45 393 0.0 595
MS.gene020548.t1 AT4G26530 78.492 358 75 1 1 356 1 358 0.0 577
MS.gene020548.t1 AT4G26530 78.492 358 75 1 1 356 1 358 0.0 577
MS.gene020548.t1 AT4G26530 78.492 358 75 1 1 356 1 358 0.0 577
MS.gene020548.t1 AT4G26520 72.346 358 97 1 1 356 1 358 0.0 528
MS.gene020548.t1 AT4G26520 72.472 356 96 1 1 354 1 356 0.0 525
MS.gene020548.t1 AT4G26520 71.508 358 97 2 1 356 1 355 0.0 518
MS.gene020548.t1 AT4G26520 71.508 358 97 2 1 356 1 355 0.0 518
MS.gene020548.t1 AT2G36460 86.891 267 33 1 92 356 1 267 7.16e-175 486
MS.gene020548.t1 AT2G36460 86.891 267 33 1 92 356 1 267 7.16e-175 486
MS.gene020548.t1 AT5G03690 83.521 267 41 2 93 356 1 267 8.54e-163 456
MS.gene020548.t1 AT5G03690 83.521 267 41 2 93 356 1 267 8.54e-163 456
MS.gene020548.t1 AT4G38970 54.802 354 153 5 6 356 49 398 8.44e-131 380
MS.gene020548.t1 AT2G01140 54.830 352 152 5 8 356 44 391 1.00e-130 379
MS.gene020548.t1 AT2G21330 54.237 354 155 5 6 356 50 399 2.74e-130 379
MS.gene020548.t1 AT2G21330 52.260 354 152 6 6 356 50 389 1.97e-121 355
MS.gene020548.t1 AT4G38970 55.598 259 111 3 6 261 49 306 2.22e-93 284
MS.gene020548.t1 AT2G21330 54.054 259 115 3 6 261 50 307 1.43e-92 279

Find 121 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCAATTTGTTCA+TGG 0.195538 7.2:+9097435 None:intergenic
TGGGCACTTTCTTTCTCTTT+TGG 0.238095 7.2:-9097406 MS.gene020548:CDS
CTCAGGAAGCATTCATTTCT+AGG 0.287182 7.2:-9097321 MS.gene020548:CDS
AGGAGTTCTTCCTGGCATTA+AGG 0.292833 7.2:-9097980 MS.gene020548:CDS
GATCCGTCCACTAGGATTTC+GGG 0.297279 7.2:+9097724 None:intergenic
GCAACTTTGGGAACTTATAA+AGG 0.304285 7.2:-9097280 MS.gene020548:CDS
CACCAGCTTCATAGTACTTC+TGG 0.307791 7.2:+9097884 None:intergenic
AGATCCGTCCACTAGGATTT+CGG 0.313330 7.2:+9097723 None:intergenic
GGCCTTGCAGCGAACCGTTC+CGG 0.326308 7.2:-9097527 MS.gene020548:CDS
CCTGCTGTTGTGTTCTTGTC+TGG 0.328998 7.2:-9097496 MS.gene020548:CDS
TGAGGTGACTGAACGTGTTC+TGG 0.341250 7.2:-9097680 MS.gene020548:CDS
GATGAATCAACTGGTACAAT+TGG 0.356390 7.2:-9098868 MS.gene020548:CDS
GGCTAACTCACAAGCAACTT+TGG 0.373884 7.2:-9097293 MS.gene020548:CDS
GTATATTCGGCTATAACTTC+AGG 0.378009 7.2:+9097556 None:intergenic
AAGTACCTGCAGCTGTCTTT+TGG 0.387833 7.2:+9098716 None:intergenic
AAGCACCAGGGGTGGTGAAT+AGG 0.392542 7.2:+9098782 None:intergenic
CAAGGCCTTAACGGTATATT+CGG 0.396094 7.2:+9097543 None:intergenic
AGGATTTCGGGCTCCACTAT+AGG 0.396396 7.2:+9097736 None:intergenic
CTCTGAGTCTCTCCATGTTA+AGG 0.403479 7.2:-9097233 MS.gene020548:CDS
AAGGAAGGAGGAGTTCTTCC+TGG 0.405511 7.2:-9097988 MS.gene020548:CDS
GGTTCGCTGCAAGGCCTTAA+CGG 0.417489 7.2:+9097534 None:intergenic
AAGCATTCATTTCTAGGTGC+AGG 0.421155 7.2:-9097315 MS.gene020548:CDS
GCTAACTCACAAGCAACTTT+GGG 0.426606 7.2:-9097292 MS.gene020548:CDS
GGAAACCACCACCCAAGGTT+TGG 0.426691 7.2:-9097926 MS.gene020548:CDS
CAGCACGCCACTTAGCAAAT+CGG 0.429319 7.2:+9097860 None:intergenic
AAGGGCACTGTAGAGCTTGC+TGG 0.441525 7.2:-9097952 MS.gene020548:CDS
AGTACTCTCAAGGCATGGGC+TGG 0.441574 7.2:-9097367 MS.gene020548:CDS
GCTGCTTACATTGGCAGCCC+AGG 0.446993 7.2:-9098910 MS.gene020548:CDS
GACAGCTCAGATGGCTCGTT+GGG 0.448656 7.2:+9097823 None:intergenic
GACATTCTCAACATTAATGC+TGG 0.457419 7.2:+9098834 None:intergenic
TTGAGAATGTCGAAACAAAC+AGG 0.460067 7.2:-9098822 MS.gene020548:CDS
ACCCAAGGTTTGGATGGGCT+TGG 0.462623 7.2:-9097916 MS.gene020548:CDS
GCGGCAAGGATACCCTTCCC+TGG 0.464998 7.2:+9098892 None:intergenic
CCAGACAAGAACACAACAGC+AGG 0.465132 7.2:+9097496 None:intergenic
TATAAAGGTGATTCTACCCT+TGG 0.470420 7.2:-9097265 MS.gene020548:CDS
CACTGTAGAGCTTGCTGGAG+GGG 0.473124 7.2:-9097947 MS.gene020548:CDS
AGCACGCCACTTAGCAAATC+GGG 0.476929 7.2:+9097861 None:intergenic
ACCTTTCGTAGAGTTGTTGA+AGG 0.478093 7.2:-9098007 MS.gene020548:CDS
ACCACCACCCAAGGTTTGGA+TGG 0.478747 7.2:-9097922 MS.gene020548:CDS
CCCATCCAAACCTTGGGTGG+TGG 0.479234 7.2:+9097921 None:intergenic
TGGTACAATTGGGAAGCGTT+TGG 0.480915 7.2:-9098857 MS.gene020548:CDS
GACCAAGCCCATCCAAACCT+TGG 0.485707 7.2:+9097914 None:intergenic
CGGGCTCCACTATAGGAACT+AGG 0.485762 7.2:+9097743 None:intergenic
ACCAAGCCCATCCAAACCTT+GGG 0.487111 7.2:+9097915 None:intergenic
CAATGCCATGAACAAATTGA+AGG 0.489466 7.2:-9097440 MS.gene020548:CDS
TGGCGTGCTGTCCTCAAGAT+TGG 0.490006 7.2:-9097847 MS.gene020548:CDS
ATGAATCAACTGGTACAATT+GGG 0.496848 7.2:-9098867 MS.gene020548:CDS
AGCCGGAACGGTTCGCTGCA+AGG 0.504681 7.2:+9097525 None:intergenic
GCTGTTGTGTTCTTGTCTGG+TGG 0.505060 7.2:-9097493 MS.gene020548:CDS
TATAGCCGAATATACCGTTA+AGG 0.505464 7.2:-9097548 MS.gene020548:CDS
GTAGAGTTGTTGAAGGAAGG+AGG 0.506426 7.2:-9098000 MS.gene020548:CDS
TATATTCGGCTATAACTTCA+GGG 0.510081 7.2:+9097557 None:intergenic
CTATACCAAAAGACAGCTGC+AGG 0.511625 7.2:-9098721 MS.gene020548:intron
GTACTCTCAAGGCATGGGCT+GGG 0.512522 7.2:-9097366 MS.gene020548:CDS
GGGTGGTGAATAGGAGTTCA+CGG 0.514483 7.2:+9098791 None:intergenic
GAATGGCCTAGTTCCTATAG+TGG 0.514663 7.2:-9097749 MS.gene020548:CDS
CCCTTGTCAACCTTAATGCC+AGG 0.519001 7.2:+9097970 None:intergenic
CCCCGGTTCAGATTCTCAAA+AGG 0.519538 7.2:-9097584 MS.gene020548:CDS
TCAATTTGTTCATGGCATTG+AGG 0.520997 7.2:+9097443 None:intergenic
CTGAGGCAGTCAAAAGCACC+AGG 0.521879 7.2:+9098769 None:intergenic
CTTGCCGCTGATGAATCAAC+TGG 0.521919 7.2:-9098877 MS.gene020548:CDS
ATTGCCAATGCTGCTTACAT+TGG 0.521934 7.2:-9098919 MS.gene020548:CDS
TTCGTAGAGTTGTTGAAGGA+AGG 0.523483 7.2:-9098003 MS.gene020548:CDS
GCTGCCAATGTAAGCAGCAT+TGG 0.524935 7.2:+9098915 None:intergenic
AGCAGAGTACTCTCAAGGCA+TGG 0.525031 7.2:-9097372 MS.gene020548:CDS
CGGCAAGGATACCCTTCCCT+GGG 0.530056 7.2:+9098893 None:intergenic
TCTGTCCACGAGAACGCCTA+TGG 0.532702 7.2:-9097802 MS.gene020548:CDS
TGAAAACATTAAGAAGGCTC+AGG 0.537239 7.2:-9097338 MS.gene020548:CDS
TCCTTCAACAACTCTACGAA+AGG 0.538329 7.2:+9098006 None:intergenic
TCCTGGCATTAAGGTTGACA+AGG 0.539046 7.2:-9097971 MS.gene020548:CDS
TGCCAGAAGTACTATGAAGC+TGG 0.539839 7.2:-9097886 MS.gene020548:CDS
GCTGTCATATGCCAAGAGAA+TGG 0.540178 7.2:-9097766 MS.gene020548:CDS
TTACATTGGCAGCCCAGGGA+AGG 0.541012 7.2:-9098905 MS.gene020548:CDS
ACAACAGCAGGAACTGCAGC+CGG 0.552294 7.2:+9097508 None:intergenic
TAGGAACTAGGCCATTCTCT+TGG 0.555043 7.2:+9097755 None:intergenic
TGGTGGACAGAGTGAGGAGG+AGG 0.559419 7.2:-9097476 MS.gene020548:CDS
GAAAGATGAAAACATTAAGA+AGG 0.560338 7.2:-9097344 MS.gene020548:CDS
TCGTGGACAGACAGCTCAGA+TGG 0.560918 7.2:+9097814 None:intergenic
AGCAGGAACTGCAGCCGGAA+CGG 0.563737 7.2:+9097513 None:intergenic
GAACTCCTATTCACCACCCC+TGG 0.564552 7.2:-9098787 MS.gene020548:CDS
AGCATTCATTTCTAGGTGCA+GGG 0.565780 7.2:-9097314 MS.gene020548:CDS
TACATTGGCAGCCCAGGGAA+GGG 0.567931 7.2:-9098904 MS.gene020548:CDS
CCACCACCCAAGGTTTGGAT+GGG 0.574869 7.2:-9097921 MS.gene020548:CDS
CTGCTTACATTGGCAGCCCA+GGG 0.576119 7.2:-9098909 MS.gene020548:CDS
AGACAGCTCAGATGGCTCGT+TGG 0.579926 7.2:+9097822 None:intergenic
AAGCCTAACATGGTAACCCC+CGG 0.580471 7.2:-9097601 MS.gene020548:CDS
GCAGAGTACTCTCAAGGCAT+GGG 0.580912 7.2:-9097371 MS.gene020548:CDS
CTGGTGCCCGATTTGCTAAG+TGG 0.581290 7.2:-9097867 MS.gene020548:CDS
AGTATTTGTAATCCTTAACA+TGG 0.585318 7.2:+9097221 None:intergenic
AATGCCATGAACAAATTGAA+GGG 0.590609 7.2:-9097439 MS.gene020548:CDS
TGTCATGAGATCCGTCCACT+AGG 0.594938 7.2:+9097716 None:intergenic
GGAGGGGAAACCACCACCCA+AGG 0.595525 7.2:-9097931 MS.gene020548:CDS
AATTGAAGGGAAAGAAGCCG+TGG 0.606270 7.2:-9097426 MS.gene020548:CDS
CTAGACCATAGGCGTTCTCG+TGG 0.608679 7.2:+9097797 None:intergenic
CTTGTCTGGTGGACAGAGTG+AGG 0.610600 7.2:-9097482 MS.gene020548:CDS
GGCACTGTAGAGCTTGCTGG+AGG 0.614491 7.2:-9097949 MS.gene020548:CDS
AAGCCCATCCAAACCTTGGG+TGG 0.615549 7.2:+9097918 None:intergenic
GCTCGTTGGGACCAATCTTG+AGG 0.620621 7.2:+9097836 None:intergenic
CAGTTGATTCATCAGCGGCA+AGG 0.629317 7.2:+9098878 None:intergenic
GCAGTCAAAAGCACCAGGGG+TGG 0.632487 7.2:+9098774 None:intergenic
CTCAGAGGCACCATCACCAA+GGG 0.635565 7.2:+9097249 None:intergenic
GCACTGTAGAGCTTGCTGGA+GGG 0.636696 7.2:-9097948 MS.gene020548:CDS
GGTGATTCTACCCTTGGTGA+TGG 0.637135 7.2:-9097259 MS.gene020548:CDS
ACTTCAGCAGAGTACTCTCA+AGG 0.637395 7.2:-9097377 MS.gene020548:CDS
GAGCCCGAAATCCTAGTGGA+CGG 0.645213 7.2:-9097727 MS.gene020548:CDS
AAAGAGAAAGAAAGTGCCCA+CGG 0.650023 7.2:+9097409 None:intergenic
GATCATCATGTTCTACTCGA+AGG 0.653456 7.2:-9097634 MS.gene020548:CDS
AGTGGAGCCCGAAATCCTAG+TGG 0.657774 7.2:-9097731 MS.gene020548:CDS
CCTGGCATTAAGGTTGACAA+GGG 0.666501 7.2:-9097970 MS.gene020548:CDS
GTCTGGTGGACAGAGTGAGG+AGG 0.667820 7.2:-9097479 MS.gene020548:CDS
ACTCAGAGGCACCATCACCA+AGG 0.668916 7.2:+9097248 None:intergenic
GAGGCAGTCAAAAGCACCAG+GGG 0.673021 7.2:+9098771 None:intergenic
TGTACCAGTTGATTCATCAG+CGG 0.678605 7.2:+9098873 None:intergenic
CTTAACATGGAGAGACTCAG+AGG 0.681234 7.2:+9097234 None:intergenic
ATTGAAGGGAAAGAAGCCGT+GGG 0.685142 7.2:-9097425 MS.gene020548:CDS
ATATTCGGCTATAACTTCAG+GGG 0.697227 7.2:+9097558 None:intergenic
TTCTTCAAGAGCAAATACCA+AGG 0.700911 7.2:-9099584 MS.gene020548:intron
AGCATAGCGAGCTAGACCAT+AGG 0.708256 7.2:+9097786 None:intergenic
TGAGGCAGTCAAAAGCACCA+GGG 0.711166 7.2:+9098770 None:intergenic
TGACATCAACAAGTGTGCTG+AGG 0.731985 7.2:-9097698 MS.gene020548:CDS
CATATAAAATCACACCACTG+AGG 0.751130 7.2:+9098752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTGAAAAAATAAAGTTT+AGG + chr7.2:9098766-9098785 None:intergenic 15.0%
!! TAACATATATGAAAATAGTT+TGG - chr7.2:9098481-9098500 MS.gene020548:intron 15.0%
!!! AGATTAAGCAATTTATTTTA+GGG + chr7.2:9097506-9097525 None:intergenic 15.0%
!!! TAGATTAAGCAATTTATTTT+AGG + chr7.2:9097507-9097526 None:intergenic 15.0%
!! TCTCAAATTATTATGTGTTT+CGG + chr7.2:9097603-9097622 None:intergenic 20.0%
!!! GTAAGATTTTAATCTTGTTT+TGG - chr7.2:9097734-9097753 MS.gene020548:CDS 20.0%
!!! TTTTCAATGTAATTAATTGC+AGG - chr7.2:9098776-9098795 MS.gene020548:CDS 20.0%
! AAATAACCATTCGCATTAAA+AGG + chr7.2:9097412-9097431 None:intergenic 25.0%
! AATAACCATTCGCATTAAAA+GGG + chr7.2:9097411-9097430 None:intergenic 25.0%
! AGACATAAACTGAAAAACAA+CGG + chr7.2:9098240-9098259 None:intergenic 25.0%
! AGATTAACAAACTGCTATTA+CGG - chr7.2:9097808-9097827 MS.gene020548:CDS 25.0%
! AGTATTTGTAATCCTTAACA+TGG + chr7.2:9099591-9099610 None:intergenic 25.0%
! ATGTTAAGTATTTCCTTACT+AGG - chr7.2:9098147-9098166 MS.gene020548:intron 25.0%
! CATATGTCAATACATAAGAA+AGG + chr7.2:9098199-9098218 None:intergenic 25.0%
! CTGCAAAAACATCATAAATA+AGG + chr7.2:9098124-9098143 None:intergenic 25.0%
! GAAAGATGAAAACATTAAGA+AGG - chr7.2:9099465-9099484 MS.gene020548:intron 25.0%
! TCATTAGTTATTAGAACTTC+TGG + chr7.2:9098451-9098470 None:intergenic 25.0%
! TGAGAAAATGATATAATCTG+AGG - chr7.2:9097618-9097637 MS.gene020548:CDS 25.0%
! TTAAGAGACAATAATAGCAT+CGG + chr7.2:9097291-9097310 None:intergenic 25.0%
!! AAAGTCTGAAGCATAATAAA+AGG + chr7.2:9097444-9097463 None:intergenic 25.0%
!! AAGTCTGAAGCATAATAAAA+GGG + chr7.2:9097443-9097462 None:intergenic 25.0%
!!! CATATTTTTTCAGTCTTCAT+CGG - chr7.2:9098738-9098757 MS.gene020548:CDS 25.0%
!!! TCTTATTTTGTCATATTTGC+AGG + chr7.2:9097697-9097716 None:intergenic 25.0%
AATGCCATGAACAAATTGAA+GGG - chr7.2:9099370-9099389 MS.gene020548:intron 30.0%
ATGAATCAACTGGTACAATT+GGG - chr7.2:9097942-9097961 MS.gene020548:CDS 30.0%
CAGTTTATGTCTAATGTTCT+TGG - chr7.2:9098248-9098267 MS.gene020548:intron 30.0%
CGATGAAGACTGAAAAAATA+TGG + chr7.2:9098740-9098759 None:intergenic 30.0%
CGGACATTATTAACAATGAA+AGG + chr7.2:9097271-9097290 None:intergenic 30.0%
GAAATAAGTTCAGCAACTAA+TGG + chr7.2:9098429-9098448 None:intergenic 30.0%
TATATTCGGCTATAACTTCA+GGG + chr7.2:9099255-9099274 None:intergenic 30.0%
TTAATCTATGCTTGATCTAC+CGG - chr7.2:9097519-9097538 MS.gene020548:CDS 30.0%
! TTTATTTCCAGAAGCTCTAA+AGG - chr7.2:9098578-9098597 MS.gene020548:intron 30.0%
!!! AAGTTATTTTTGCCAGTGTT+TGG + chr7.2:9098709-9098728 None:intergenic 30.0%
!!! AGTTATACGCTGTTTTGAAA+AGG + chr7.2:9098510-9098529 None:intergenic 30.0%
!!! TTTTTATCCTTTAGAGCTTC+TGG + chr7.2:9098588-9098607 None:intergenic 30.0%
AAGCTATCATAGAGAGACTA+TGG + chr7.2:9098355-9098374 None:intergenic 35.0%
ATATTCGGCTATAACTTCAG+GGG + chr7.2:9099254-9099273 None:intergenic 35.0%
CAATGCCATGAACAAATTGA+AGG - chr7.2:9099369-9099388 MS.gene020548:intron 35.0%
CATATAAAATCACACCACTG+AGG + chr7.2:9098060-9098079 None:intergenic 35.0%
GACATTCTCAACATTAATGC+TGG + chr7.2:9097978-9097997 None:intergenic 35.0%
GAGTAAATGAGAGAATACCT+TGG + chr7.2:9097245-9097264 None:intergenic 35.0%
GATGAATCAACTGGTACAAT+TGG - chr7.2:9097941-9097960 MS.gene020548:CDS 35.0%
GTATATTCGGCTATAACTTC+AGG + chr7.2:9099256-9099275 None:intergenic 35.0%
TAAGTTCCTTATCCAAACAC+TGG - chr7.2:9098694-9098713 MS.gene020548:intron 35.0%
TATAAAGGTGATTCTACCCT+TGG - chr7.2:9099544-9099563 MS.gene020548:intron 35.0%
TATAGCCGAATATACCGTTA+AGG - chr7.2:9099261-9099280 MS.gene020548:intron 35.0%
TCCAGATCAAAAGTCATGAT+AGG + chr7.2:9097770-9097789 None:intergenic 35.0%
TGAAAACATTAAGAAGGCTC+AGG - chr7.2:9099471-9099490 MS.gene020548:intron 35.0%
TTCTTCAAGAGCAAATACCA+AGG - chr7.2:9097225-9097244 MS.gene020548:CDS 35.0%
TTGAGAATGTCGAAACAAAC+AGG - chr7.2:9097987-9098006 MS.gene020548:CDS 35.0%
! AGAGCTTCTGGAAATAAACT+CGG + chr7.2:9098576-9098595 None:intergenic 35.0%
! CAGTGGTGTGATTTTATATG+AGG - chr7.2:9098060-9098079 MS.gene020548:intron 35.0%
! CTTTCCCTTCAATTTGTTCA+TGG + chr7.2:9099377-9099396 None:intergenic 35.0%
! GCAACTTTGGGAACTTATAA+AGG - chr7.2:9099529-9099548 MS.gene020548:intron 35.0%
! TATTATGTGTTTCGGTGTGT+CGG + chr7.2:9097595-9097614 None:intergenic 35.0%
! TCAATTTGTTCATGGCATTG+AGG + chr7.2:9099369-9099388 None:intergenic 35.0%
! TTGATCCCTTTTAATGCGAA+TGG - chr7.2:9097403-9097422 MS.gene020548:CDS 35.0%
! TTTTTGCCAGTGTTTGGATA+AGG + chr7.2:9098703-9098722 None:intergenic 35.0%
!! AACCTTTTGAGAATCTGAAC+CGG + chr7.2:9099230-9099249 None:intergenic 35.0%
!! TTGCTCATTGATTCCTAGTA+AGG + chr7.2:9098163-9098182 None:intergenic 35.0%
!!! AACTCTTTTGAAGCCTAACA+TGG - chr7.2:9099198-9099217 MS.gene020548:intron 35.0%
!!! ACTTTATTTTCAGTCGCCAT+TGG - chr7.2:9098547-9098566 MS.gene020548:intron 35.0%
!!! TTTCTCGTTTTCGTCGATTT+TGG - chr7.2:9097355-9097374 MS.gene020548:CDS 35.0%
ACCTTTCGTAGAGTTGTTGA+AGG - chr7.2:9098802-9098821 MS.gene020548:CDS 40.0%
ATAATCCCAACCTACAGGTA+TGG + chr7.2:9097673-9097692 None:intergenic 40.0%
ATATTGAGCCTACGAAGACA+CGG - chr7.2:9097566-9097585 MS.gene020548:CDS 40.0%
ATCAGCTCAACTATGAAGCA+CGG + chr7.2:9097649-9097668 None:intergenic 40.0%
CAAGGCCTTAACGGTATATT+CGG + chr7.2:9099269-9099288 None:intergenic 40.0%
CAGACTTTCTCGAATTGTCA+TGG - chr7.2:9097317-9097336 MS.gene020548:CDS 40.0%
GAAATAAACTCGGCAACCAA+TGG + chr7.2:9098566-9098585 None:intergenic 40.0%
GACGAAAACGAGAAAGATAG+AGG + chr7.2:9097350-9097369 None:intergenic 40.0%
GATCATCATGTTCTACTCGA+AGG - chr7.2:9099175-9099194 MS.gene020548:intron 40.0%
GCTAACTCACAAGCAACTTT+GGG - chr7.2:9099517-9099536 MS.gene020548:intron 40.0%
GTGACTAGATAAGCTCAAAG+AGG + chr7.2:9098279-9098298 None:intergenic 40.0%
TAACAAACTGCTATTACGGC+AGG - chr7.2:9097812-9097831 MS.gene020548:CDS 40.0%
TCCTTCAACAACTCTACGAA+AGG + chr7.2:9098806-9098825 None:intergenic 40.0%
TGATACCATACCTGTAGGTT+GGG - chr7.2:9097665-9097684 MS.gene020548:CDS 40.0%
TTCGTAGAGTTGTTGAAGGA+AGG - chr7.2:9098806-9098825 MS.gene020548:CDS 40.0%
! AAACAAGAGCACAAGCATTC+CGG + chr7.2:9097541-9097560 None:intergenic 40.0%
! AAGCATTCATTTCTAGGTGC+AGG - chr7.2:9099494-9099513 MS.gene020548:intron 40.0%
! AGCATTCATTTCTAGGTGCA+GGG - chr7.2:9099495-9099514 MS.gene020548:intron 40.0%
! ATTGCCAATGCTGCTTACAT+TGG - chr7.2:9097890-9097909 MS.gene020548:CDS 40.0%
! GCCTATCATGACTTTTGATC+TGG - chr7.2:9097766-9097785 MS.gene020548:CDS 40.0%
! TGGGCACTTTCTTTCTCTTT+TGG - chr7.2:9099403-9099422 MS.gene020548:intron 40.0%
! TGTACCAGTTGATTCATCAG+CGG + chr7.2:9097939-9097958 None:intergenic 40.0%
!! AAAGAGAAAGAAAGTGCCCA+CGG + chr7.2:9099403-9099422 None:intergenic 40.0%
!! ACCTTTTGAGAATCTGAACC+GGG + chr7.2:9099229-9099248 None:intergenic 40.0%
!! CTCAGGAAGCATTCATTTCT+AGG - chr7.2:9099488-9099507 MS.gene020548:intron 40.0%
AATTGAAGGGAAAGAAGCCG+TGG - chr7.2:9099383-9099402 MS.gene020548:intron 45.0%
AGATCCGTCCACTAGGATTT+CGG + chr7.2:9099089-9099108 None:intergenic 45.0%
AGGAGTTCTTCCTGGCATTA+AGG - chr7.2:9098829-9098848 MS.gene020548:CDS 45.0%
ATTGAAGGGAAAGAAGCCGT+GGG - chr7.2:9099384-9099403 MS.gene020548:intron 45.0%
CACCAGCTTCATAGTACTTC+TGG + chr7.2:9098928-9098947 None:intergenic 45.0%
CCTGGCATTAAGGTTGACAA+GGG - chr7.2:9098839-9098858 MS.gene020548:CDS 45.0%
CTATACCAAAAGACAGCTGC+AGG - chr7.2:9098088-9098107 MS.gene020548:intron 45.0%
CTCTGAGTCTCTCCATGTTA+AGG - chr7.2:9099576-9099595 MS.gene020548:intron 45.0%
CTGATACCATACCTGTAGGT+TGG - chr7.2:9097664-9097683 MS.gene020548:CDS 45.0%
CTTAACATGGAGAGACTCAG+AGG + chr7.2:9099578-9099597 None:intergenic 45.0%
GAATGGCCTAGTTCCTATAG+TGG - chr7.2:9099060-9099079 MS.gene020548:intron 45.0%
GCTGTCATATGCCAAGAGAA+TGG - chr7.2:9099043-9099062 MS.gene020548:intron 45.0%
GGCTAACTCACAAGCAACTT+TGG - chr7.2:9099516-9099535 MS.gene020548:intron 45.0%
GTAGAGTTGTTGAAGGAAGG+AGG - chr7.2:9098809-9098828 MS.gene020548:CDS 45.0%
TAGGAACTAGGCCATTCTCT+TGG + chr7.2:9099057-9099076 None:intergenic 45.0%
TCCTGGCATTAAGGTTGACA+AGG - chr7.2:9098838-9098857 MS.gene020548:CDS 45.0%
TGACATCAACAAGTGTGCTG+AGG - chr7.2:9099111-9099130 MS.gene020548:intron 45.0%
TGAGCTGATACCATACCTGT+AGG - chr7.2:9097660-9097679 MS.gene020548:CDS 45.0%
! AAGTACCTGCAGCTGTCTTT+TGG + chr7.2:9098096-9098115 None:intergenic 45.0%
! ACTTCAGCAGAGTACTCTCA+AGG - chr7.2:9099432-9099451 MS.gene020548:intron 45.0%
!! CCTTTTGAGAATCTGAACCG+GGG + chr7.2:9099228-9099247 None:intergenic 45.0%
!! CTTTTGAGAATCTGAACCGG+GGG + chr7.2:9099227-9099246 None:intergenic 45.0%
!! TGCCAGAAGTACTATGAAGC+TGG - chr7.2:9098923-9098942 MS.gene020548:CDS 45.0%
!! TGGTACAATTGGGAAGCGTT+TGG - chr7.2:9097952-9097971 MS.gene020548:CDS 45.0%
AAGCCTAACATGGTAACCCC+CGG - chr7.2:9099208-9099227 MS.gene020548:intron 50.0%
AAGGAAGGAGGAGTTCTTCC+TGG - chr7.2:9098821-9098840 MS.gene020548:CDS 50.0%
ACCAAGCCCATCCAAACCTT+GGG + chr7.2:9098897-9098916 None:intergenic 50.0%
AGCACGCCACTTAGCAAATC+GGG + chr7.2:9098951-9098970 None:intergenic 50.0%
AGCATAGCGAGCTAGACCAT+AGG + chr7.2:9099026-9099045 None:intergenic 50.0%
AGGATTTCGGGCTCCACTAT+AGG + chr7.2:9099076-9099095 None:intergenic 50.0%
CAGCACGCCACTTAGCAAAT+CGG + chr7.2:9098952-9098971 None:intergenic 50.0%
CAGGCATAATCCCAACCTAC+AGG + chr7.2:9097678-9097697 None:intergenic 50.0%
CCAGACAAGAACACAACAGC+AGG + chr7.2:9099316-9099335 None:intergenic 50.0%
CCCCGGTTCAGATTCTCAAA+AGG - chr7.2:9099225-9099244 MS.gene020548:intron 50.0%
CCCTTGTCAACCTTAATGCC+AGG + chr7.2:9098842-9098861 None:intergenic 50.0%
CCTGCTGTTGTGTTCTTGTC+TGG - chr7.2:9099313-9099332 MS.gene020548:intron 50.0%
CTTGCCGCTGATGAATCAAC+TGG - chr7.2:9097932-9097951 MS.gene020548:CDS 50.0%
GATCCGTCCACTAGGATTTC+GGG + chr7.2:9099088-9099107 None:intergenic 50.0%
GCTGCCAATGTAAGCAGCAT+TGG + chr7.2:9097897-9097916 None:intergenic 50.0%
GCTGTTGTGTTCTTGTCTGG+TGG - chr7.2:9099316-9099335 MS.gene020548:intron 50.0%
GGGTGGTGAATAGGAGTTCA+CGG + chr7.2:9098021-9098040 None:intergenic 50.0%
GGTGATTCTACCCTTGGTGA+TGG - chr7.2:9099550-9099569 MS.gene020548:intron 50.0%
TGAGGTGACTGAACGTGTTC+TGG - chr7.2:9099129-9099148 MS.gene020548:intron 50.0%
TGTCATGAGATCCGTCCACT+AGG + chr7.2:9099096-9099115 None:intergenic 50.0%
! AGCAGAGTACTCTCAAGGCA+TGG - chr7.2:9099437-9099456 MS.gene020548:intron 50.0%
! CAGTTGATTCATCAGCGGCA+AGG + chr7.2:9097934-9097953 None:intergenic 50.0%
! GCAGAGTACTCTCAAGGCAT+GGG - chr7.2:9099438-9099457 MS.gene020548:intron 50.0%
!! TGAGGCAGTCAAAAGCACCA+GGG + chr7.2:9098042-9098061 None:intergenic 50.0%
AAGCACCAGGGGTGGTGAAT+AGG + chr7.2:9098030-9098049 None:intergenic 55.0%
AAGCCCATCCAAACCTTGGG+TGG + chr7.2:9098894-9098913 None:intergenic 55.0%
ACAACAGCAGGAACTGCAGC+CGG + chr7.2:9099304-9099323 None:intergenic 55.0%
ACCACCACCCAAGGTTTGGA+TGG - chr7.2:9098887-9098906 MS.gene020548:CDS 55.0%
AGACAGCTCAGATGGCTCGT+TGG + chr7.2:9098990-9099009 None:intergenic 55.0%
AGTACTCTCAAGGCATGGGC+TGG - chr7.2:9099442-9099461 MS.gene020548:intron 55.0%
AGTGGAGCCCGAAATCCTAG+TGG - chr7.2:9099078-9099097 MS.gene020548:intron 55.0%
CCACCACCCAAGGTTTGGAT+GGG - chr7.2:9098888-9098907 MS.gene020548:CDS 55.0%
CGGGCTCCACTATAGGAACT+AGG + chr7.2:9099069-9099088 None:intergenic 55.0%
CTAGACCATAGGCGTTCTCG+TGG + chr7.2:9099015-9099034 None:intergenic 55.0%
CTGCTTACATTGGCAGCCCA+GGG - chr7.2:9097900-9097919 MS.gene020548:CDS 55.0%
GAACCGGGGGTTACCATGTT+AGG + chr7.2:9099214-9099233 None:intergenic 55.0%
GAACTCCTATTCACCACCCC+TGG - chr7.2:9098022-9098041 MS.gene020548:intron 55.0%
GACAGCTCAGATGGCTCGTT+GGG + chr7.2:9098989-9099008 None:intergenic 55.0%
GACCAAGCCCATCCAAACCT+TGG + chr7.2:9098898-9098917 None:intergenic 55.0%
GAGCCCGAAATCCTAGTGGA+CGG - chr7.2:9099082-9099101 MS.gene020548:intron 55.0%
GCTCGTTGGGACCAATCTTG+AGG + chr7.2:9098976-9098995 None:intergenic 55.0%
GGAAACCACCACCCAAGGTT+TGG - chr7.2:9098883-9098902 MS.gene020548:CDS 55.0%
GGTTCGCTGCAAGGCCTTAA+CGG + chr7.2:9099278-9099297 None:intergenic 55.0%
GTACTCTCAAGGCATGGGCT+GGG - chr7.2:9099443-9099462 MS.gene020548:intron 55.0%
TACATTGGCAGCCCAGGGAA+GGG - chr7.2:9097905-9097924 MS.gene020548:CDS 55.0%
TCGTGGACAGACAGCTCAGA+TGG + chr7.2:9098998-9099017 None:intergenic 55.0%
TCTGTCCACGAGAACGCCTA+TGG - chr7.2:9099007-9099026 MS.gene020548:intron 55.0%
TGGCGTGCTGTCCTCAAGAT+TGG - chr7.2:9098962-9098981 MS.gene020548:intron 55.0%
TTACATTGGCAGCCCAGGGA+AGG - chr7.2:9097904-9097923 MS.gene020548:CDS 55.0%
! ACCCAAGGTTTGGATGGGCT+TGG - chr7.2:9098893-9098912 MS.gene020548:CDS 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG - chr7.2:9099327-9099346 MS.gene020548:intron 55.0%
!! AAGGGCACTGTAGAGCTTGC+TGG - chr7.2:9098857-9098876 MS.gene020548:CDS 55.0%
!! ACTCAGAGGCACCATCACCA+AGG + chr7.2:9099564-9099583 None:intergenic 55.0%
!! CACTGTAGAGCTTGCTGGAG+GGG - chr7.2:9098862-9098881 MS.gene020548:CDS 55.0%
!! CTCAGAGGCACCATCACCAA+GGG + chr7.2:9099563-9099582 None:intergenic 55.0%
!! CTGAGGCAGTCAAAAGCACC+AGG + chr7.2:9098043-9098062 None:intergenic 55.0%
!! CTGGTGCCCGATTTGCTAAG+TGG - chr7.2:9098942-9098961 MS.gene020548:intron 55.0%
!! GAGGCAGTCAAAAGCACCAG+GGG + chr7.2:9098041-9098060 None:intergenic 55.0%
!! GCACTGTAGAGCTTGCTGGA+GGG - chr7.2:9098861-9098880 MS.gene020548:CDS 55.0%
!! GGTGCTTTTGACTGCCTCAG+TGG - chr7.2:9098043-9098062 MS.gene020548:intron 55.0%
AGCAGGAACTGCAGCCGGAA+CGG + chr7.2:9099299-9099318 None:intergenic 60.0%
CCCATCCAAACCTTGGGTGG+TGG + chr7.2:9098891-9098910 None:intergenic 60.0%
CGGCAAGGATACCCTTCCCT+GGG + chr7.2:9097919-9097938 None:intergenic 60.0%
GCTGCTTACATTGGCAGCCC+AGG - chr7.2:9097899-9097918 MS.gene020548:CDS 60.0%
! GTCGGTGTCCGTGTCTTCGT+AGG + chr7.2:9097577-9097596 None:intergenic 60.0%
! GTCTGGTGGACAGAGTGAGG+AGG - chr7.2:9099330-9099349 MS.gene020548:intron 60.0%
! TGGTGGACAGAGTGAGGAGG+AGG - chr7.2:9099333-9099352 MS.gene020548:intron 60.0%
!! GCAGTCAAAAGCACCAGGGG+TGG + chr7.2:9098038-9098057 None:intergenic 60.0%
!! GGCACTGTAGAGCTTGCTGG+AGG - chr7.2:9098860-9098879 MS.gene020548:CDS 60.0%
AGCCGGAACGGTTCGCTGCA+AGG + chr7.2:9099287-9099306 None:intergenic 65.0%
GCGGCAAGGATACCCTTCCC+TGG + chr7.2:9097920-9097939 None:intergenic 65.0%
GGAGGGGAAACCACCACCCA+AGG - chr7.2:9098878-9098897 MS.gene020548:CDS 65.0%
GGCCTTGCAGCGAACCGTTC+CGG - chr7.2:9099282-9099301 MS.gene020548:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 9097219 9099612 9097219 ID=MS.gene020548
chr7.2 mRNA 9097219 9099612 9097219 ID=MS.gene020548.t1;Parent=MS.gene020548
chr7.2 exon 9099585 9099612 9099585 ID=MS.gene020548.t1.exon1;Parent=MS.gene020548.t1
chr7.2 CDS 9099585 9099612 9099585 ID=cds.MS.gene020548.t1;Parent=MS.gene020548.t1
chr7.2 exon 9098722 9098949 9098722 ID=MS.gene020548.t1.exon2;Parent=MS.gene020548.t1
chr7.2 CDS 9098722 9098949 9098722 ID=cds.MS.gene020548.t1;Parent=MS.gene020548.t1
chr7.2 exon 9097219 9098033 9097219 ID=MS.gene020548.t1.exon3;Parent=MS.gene020548.t1
chr7.2 CDS 9097219 9098033 9097219 ID=cds.MS.gene020548.t1;Parent=MS.gene020548.t1
Gene Sequence

>MS.gene020548

ATGTCTTTCTTCAAGAGCAAATACCAAGGTATTCTCTCATTTACTCTTGCCTTTCATTGTTAATAATGTCCGATGCTATTATTGTCTCTTAATCTTGTCAGACTTTCTCGAATTGTCATGGATTTTTGCCTCTATCTTTCTCGTTTTCGTCGATTTTGGTTGAACAATTATGCTGTATCAAAATTTGATCCCTTTTAATGCGAATGGTTATTTTATTATAACCCTTTTATTATGCTTCAGACTTTGTGATCTTAAGATTTTGATACTTTTTTATTAATTGTGTGCCCTAAAATAAATTGCTTAATCTATGCTTGATCTACCGGAATGCTTGTGCTCTTGTTTTCATGATATTGAGCCTACGAAGACACGGACACCGACACACCGAAACACATAATAATTTGAGAAAATGATATAATCTGAGGAGTGTCCGTGCTTCATAGTTGAGCTGATACCATACCTGTAGGTTGGGATTATGCCTGCAAATATGACAAAATAAGAACACTTATTTGTATTATGTAAGATTTTAATCTTGTTTTGGTTTTGTGATGCCTATCATGACTTTTGATCTGGATTGAAATAAAATTATTAGAGATTAACAAACTGCTATTACGGCAGGATTGAAAAGATATGTAATCTACTAGTTAATGTGCTGATGTATTGCAGATGAACTCATTGCCAATGCTGCTTACATTGGCAGCCCAGGGAAGGGTATCCTTGCCGCTGATGAATCAACTGGTACAATTGGGAAGCGTTTGGCCAGCATTAATGTTGAGAATGTCGAAACAAACAGGCGTGCTCTCCGTGAACTCCTATTCACCACCCCTGGTGCTTTTGACTGCCTCAGTGGTGTGATTTTATATGAGGAAACTCTATACCAAAAGACAGCTGCAGGTACTTATGCTCCTTATTTATGATGTTTTTGCAGTACATGTTAAGTATTTCCTTACTAGGAATCAATGAGCAAAATCTTACTTAAACCTTTCTTATGTATTGACATATGTTCTTAGATATAAATATTCCGTTGTTTTTCAGTTTATGTCTAATGTTCTTGGATTGACCTCTTTGAGCTTATCTAGTCACGTAAGTATTTGTGAGACTGTTGAGAGAGTTTATGATATAAGCTTATGACATATCCATAGTCTCTCTATGATAGCTTTTAAAATCAACGTATAACTTATATAAAACAAATTTACTTTATTTTAAGTTGCCATTAGTTGCTGAACTTATTTCCAGAAGTTCTAATAACTAATGAAAACAACTTATAACATATATGAAAATAGTTTGGATACCTTTTCAAAACAGCGTATAACTTATATAAAAACAAATTTACTTTATTTTCAGTCGCCATTGGTTGCCGAGTTTATTTCCAGAAGCTCTAAAGGATAAAAAATGAAAACAACTTATAACTTATATGAAAACAATTTGACTTTAATTTATATTTTGTTATAGAAATAACTTATATACAAGTGCTTAATTAAGTTCCTTATCCAAACACTGGCAAAAATAACTTTAATCATGCCATATTTTTTCAGTCTTCATCGGCTCCTAAACTTTATTTTTTCAATGTAATTAATTGCAGGAAAACCTTTCGTAGAGTTGTTGAAGGAAGGAGGAGTTCTTCCTGGCATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAGGGGAAACCACCACCCAAGGTTTGGATGGGCTTGGTCAGCGTTGCCAGAAGTACTATGAAGCTGGTGCCCGATTTGCTAAGTGGCGTGCTGTCCTCAAGATTGGTCCCAACGAGCCATCTGAGCTGTCTGTCCACGAGAACGCCTATGGTCTAGCTCGCTATGCTGTCATATGCCAAGAGAATGGCCTAGTTCCTATAGTGGAGCCCGAAATCCTAGTGGACGGATCTCATGACATCAACAAGTGTGCTGAGGTGACTGAACGTGTTCTGGCTGCGTGCTACAAAGCTCTAAGTGATCATCATGTTCTACTCGAAGGAACTCTTTTGAAGCCTAACATGGTAACCCCCGGTTCAGATTCTCAAAAGGTTGCCCCTGAAGTTATAGCCGAATATACCGTTAAGGCCTTGCAGCGAACCGTTCCGGCTGCAGTTCCTGCTGTTGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCAACACTCAACCTCAATGCCATGAACAAATTGAAGGGAAAGAAGCCGTGGGCACTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGTACTCTCAAGGCATGGGCTGGGAAAGATGAAAACATTAAGAAGGCTCAGGAAGCATTCATTTCTAGGTGCAGGGCTAACTCACAAGCAACTTTGGGAACTTATAAAGGTGATTCTACCCTTGGTGATGGTGCCTCTGAGTCTCTCCATGTTAAGGATTACAAATACTAA

Protein sequence

>MS.gene020548.t1

MSFFKSKYQDELIANAAYIGSPGKGILAADESTGTIGKRLASINVENVETNRRALRELLFTTPGAFDCLSGVILYEETLYQKTAAGKPFVELLKEGGVLPGIKVDKGTVELAGGETTTQGLDGLGQRCQKYYEAGARFAKWRAVLKIGPNEPSELSVHENAYGLARYAVICQENGLVPIVEPEILVDGSHDINKCAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSQKVAPEVIAEYTVKALQRTVPAAVPAVVFLSGGQSEEEATLNLNAMNKLKGKKPWALSFSFGRALQQSTLKAWAGKDENIKKAQEAFISRCRANSQATLGTYKGDSTLGDGASESLHVKDYKY