AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020642

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020642.t1 MTR_7g102260 98.582 282 4 0 1 282 12 293 0.0 583
MS.gene020642.t1 MTR_1g063020 84.752 282 43 0 1 282 15 296 0.0 515
MS.gene020642.t1 MTR_4g057450 73.022 278 75 0 3 280 27 304 4.34e-155 434
MS.gene020642.t1 MTR_2g095800 67.260 281 91 1 1 280 29 309 1.82e-141 400
MS.gene020642.t1 MTR_1g033420 41.948 267 145 4 21 280 28 291 1.57e-66 210
MS.gene020642.t1 MTR_8g064180 39.175 291 156 6 5 280 26 310 1.82e-64 204
MS.gene020642.t1 MTR_1g105900 39.326 267 143 8 25 280 33 291 2.89e-60 193
MS.gene020642.t1 MTR_5g029100 40.891 247 133 3 44 280 62 305 2.94e-60 195
MS.gene020642.t1 MTR_3g084630 41.667 264 137 6 23 280 25 277 2.94e-60 193
MS.gene020642.t1 MTR_7g093530 40.000 265 142 6 25 280 23 279 3.00e-60 193
MS.gene020642.t1 MTR_3g084620 41.667 264 137 6 23 280 25 277 3.14e-60 193
MS.gene020642.t1 MTR_4g128570 39.925 268 136 7 19 280 24 272 7.29e-60 191
MS.gene020642.t1 MTR_8g081040 40.458 262 140 6 25 280 30 281 1.09e-59 191
MS.gene020642.t1 MTR_4g128410 39.623 265 143 7 25 280 24 280 7.89e-59 189
MS.gene020642.t1 MTR_4g128580 39.568 278 147 6 16 280 16 285 2.43e-58 188
MS.gene020642.t1 MTR_3g089540 40.840 262 141 5 25 280 29 282 4.95e-58 187
MS.gene020642.t1 MTR_4g128400 39.623 265 143 6 25 280 27 283 1.01e-57 186
MS.gene020642.t1 MTR_4g126920 39.474 266 143 6 25 280 24 281 1.06e-57 186
MS.gene020642.t1 MTR_7g084770 37.410 278 146 7 10 280 31 287 1.18e-57 186
MS.gene020642.t1 MTR_6g088320 38.806 268 145 7 25 281 25 284 2.06e-57 186
MS.gene020642.t1 MTR_7g084760 37.410 278 146 7 10 280 31 287 2.15e-57 186
MS.gene020642.t1 MTR_2g038860 38.697 261 139 5 25 272 25 277 6.16e-57 185
MS.gene020642.t1 MTR_2g038705 38.697 261 139 5 25 272 25 277 6.16e-57 185
MS.gene020642.t1 MTR_5g091730 39.695 262 142 7 25 280 27 278 7.28e-57 184
MS.gene020642.t1 MTR_5g029100 40.678 236 127 3 55 280 42 274 1.26e-56 184
MS.gene020642.t1 MTR_7g084750 37.121 264 149 7 26 280 32 287 8.21e-56 182
MS.gene020642.t1 MTR_8g102220 37.828 267 127 7 25 280 28 266 1.14e-55 181
MS.gene020642.t1 MTR_2g089140 35.816 282 153 6 14 280 18 286 2.65e-55 180
MS.gene020642.t1 MTR_8g090100 39.630 270 139 8 26 280 21 281 2.85e-55 181
MS.gene020642.t1 MTR_4g045853 37.037 270 142 6 18 272 24 280 5.55e-55 179
MS.gene020642.t1 MTR_8g102910 38.806 268 145 7 25 281 21 280 2.65e-54 177
MS.gene020642.t1 MTR_6g033085 38.843 242 133 6 46 280 54 287 2.74e-54 178
MS.gene020642.t1 MTR_6g033055 38.430 242 134 6 46 280 54 287 1.36e-53 176
MS.gene020642.t1 MTR_1g105495 36.900 271 144 8 26 280 35 294 4.39e-53 175
MS.gene020642.t1 MTR_7g056090 38.889 270 144 9 19 280 25 281 1.85e-51 170
MS.gene020642.t1 MTR_4g097640 37.079 267 145 8 26 280 32 287 3.98e-50 167
MS.gene020642.t1 MTR_4g097670 37.079 267 145 8 26 280 32 287 3.98e-50 167
MS.gene020642.t1 MTR_4g097700 37.079 267 145 8 26 280 69 324 4.68e-50 168
MS.gene020642.t1 MTR_8g013055 37.165 261 144 6 22 272 27 277 4.00e-49 164
MS.gene020642.t1 MTR_2g089140 37.118 229 121 5 67 280 3 223 2.00e-48 160
MS.gene020642.t1 MTR_4g128590 35.145 276 141 8 19 280 24 275 3.15e-48 162
MS.gene020642.t1 MTR_2g049030 33.585 265 148 11 26 280 30 276 1.19e-39 139
MS.gene020642.t1 MTR_2g049130 32.453 265 157 10 26 282 29 279 1.26e-39 139
MS.gene020642.t1 MTR_8g032640 33.702 181 103 6 44 220 31 198 1.06e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020642.t1 AT2G36870 84.173 278 44 0 4 281 21 298 0.0 502
MS.gene020642.t1 AT3G44990 67.407 270 88 0 11 280 24 293 2.97e-135 384
MS.gene020642.t1 AT2G36870 88.608 158 18 0 4 161 21 178 8.22e-104 300
MS.gene020642.t1 AT4G14130 43.657 268 129 7 25 280 27 284 3.46e-68 213
MS.gene020642.t1 AT1G10550 36.429 280 156 4 18 280 35 309 8.76e-65 205
MS.gene020642.t1 AT1G32170 42.086 278 141 7 18 280 21 293 3.37e-64 205
MS.gene020642.t1 AT1G14720 40.959 271 145 6 20 280 25 290 2.38e-63 202
MS.gene020642.t1 AT3G23730 40.590 271 140 7 23 280 24 286 1.30e-62 199
MS.gene020642.t1 AT5G57550 41.107 253 136 5 25 272 29 273 6.82e-62 197
MS.gene020642.t1 AT5G57560 40.942 276 131 9 23 280 20 281 8.73e-61 194
MS.gene020642.t1 AT2G01850 39.015 264 150 4 25 280 30 290 6.17e-60 194
MS.gene020642.t1 AT5G57530 41.509 265 136 8 26 280 27 282 1.18e-59 191
MS.gene020642.t1 AT4G25810 41.697 271 135 9 23 280 23 283 5.91e-59 189
MS.gene020642.t1 AT5G65730 38.951 267 142 7 25 280 34 290 6.69e-58 187
MS.gene020642.t1 AT4G25820 42.857 266 133 9 25 280 29 285 1.55e-57 186
MS.gene020642.t1 AT5G48070 39.925 268 135 8 25 280 28 281 2.11e-57 186
MS.gene020642.t1 AT4G18990 40.000 260 130 5 42 280 58 312 4.03e-57 187
MS.gene020642.t1 AT5G57540 41.132 265 137 9 26 280 26 281 7.81e-57 184
MS.gene020642.t1 AT4G30270 41.107 253 124 8 34 280 32 265 3.35e-56 182
MS.gene020642.t1 AT4G30290 42.537 268 128 8 25 280 23 276 5.18e-56 182
MS.gene020642.t1 AT1G11545 38.267 277 140 8 23 280 35 299 7.72e-56 182
MS.gene020642.t1 AT2G18800 37.500 280 141 9 25 280 27 296 2.60e-55 181
MS.gene020642.t1 AT4G30280 44.255 235 108 7 55 280 61 281 3.85e-55 180
MS.gene020642.t1 AT1G65310 45.259 232 110 8 55 280 61 281 3.98e-55 180
MS.gene020642.t1 AT1G65310 45.259 232 110 8 55 280 83 303 4.93e-55 180
MS.gene020642.t1 AT3G25050 35.075 268 158 6 22 281 31 290 2.18e-54 178
MS.gene020642.t1 AT2G06850 39.130 276 145 9 17 280 26 290 2.44e-54 178
MS.gene020642.t1 AT4G13090 39.179 268 145 5 23 280 29 288 5.10e-54 177
MS.gene020642.t1 AT2G14620 36.131 274 156 8 18 280 29 294 8.64e-54 177
MS.gene020642.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene020642.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene020642.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene020642.t1 AT4G13080 38.023 263 145 7 26 280 39 291 1.54e-52 173
MS.gene020642.t1 AT4G37800 38.636 264 145 6 26 280 34 289 1.90e-52 173
MS.gene020642.t1 AT4G03210 35.741 263 138 5 26 272 29 276 4.32e-52 172
MS.gene020642.t1 AT2G06850 41.102 236 120 7 54 280 5 230 7.81e-52 170
MS.gene020642.t1 AT4G03210 37.402 254 127 6 42 280 20 256 1.82e-50 167
MS.gene020642.t1 AT2G14620 36.179 246 140 7 44 280 7 244 2.62e-49 164
MS.gene020642.t1 AT4G28850 34.926 272 157 8 21 280 24 287 6.39e-49 164
MS.gene020642.t1 AT2G14620 37.168 226 125 7 64 280 16 233 4.51e-46 155
MS.gene020642.t1 AT4G18990 40.092 217 104 5 85 280 27 238 9.47e-44 150
MS.gene020642.t1 AT3G48580 34.766 256 134 10 34 280 42 273 1.07e-38 137
MS.gene020642.t1 AT3G48580 33.906 233 126 8 54 280 4 214 1.40e-35 127
MS.gene020642.t1 AT3G48580 30.859 256 124 11 34 280 42 253 8.28e-24 97.4

Find 77 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAATGCATTAACTATT+TGG 0.118568 7.2:-10518583 MS.gene020642:CDS
ATTAGACCAATGTGGCTTTA+TGG 0.169563 7.2:-10516883 MS.gene020642:CDS
GATTAAACTCACAACAAAAT+AGG 0.178606 7.2:-10516693 MS.gene020642:CDS
TAAAGCCACATTGGTCTAAT+TGG 0.229363 7.2:+10516886 None:intergenic
GTGACTTACATTATCTCTTT+AGG 0.271288 7.2:+10517952 None:intergenic
TGTGGCTTTATGGTTCAATA+TGG 0.272583 7.2:-10516873 MS.gene020642:CDS
TTCCTCGGGTACCTCCTTAT+TGG 0.277629 7.2:+10516925 None:intergenic
TTTATTTAACCCCAACATTC+AGG 0.280498 7.2:+10516595 None:intergenic
GAGAAATGAAGTTTCATCTT+TGG 0.298153 7.2:-10518020 MS.gene020642:CDS
ATAACCAGGTTGAAGCTTAA+TGG 0.307755 7.2:+10518395 None:intergenic
GGCCACCTTCACCAGGCTAT+TGG 0.328340 7.2:-10518682 MS.gene020642:CDS
TTCATCACTATGCTATACTA+TGG 0.351229 7.2:-10517978 MS.gene020642:CDS
CAGACCAATGTTTATGTAAG+AGG 0.355685 7.2:-10518069 MS.gene020642:CDS
GAGTTTCTTGGAACAACATT+TGG 0.363278 7.2:-10518108 MS.gene020642:CDS
ACATTGGTCTGCAAAGTATA+AGG 0.365369 7.2:+10518081 None:intergenic
TAGACTAACACCTGAATGTT+GGG 0.377909 7.2:-10516605 MS.gene020642:CDS
TCAGCATCACCATATGGTTC+TGG 0.382882 7.2:-10516718 MS.gene020642:CDS
AACAGGAAGTGGATTTAAAT+CGG 0.399827 7.2:-10518451 MS.gene020642:intron
TCGGTTCGTCCGTTTCGATC+TGG 0.399991 7.2:-10518432 MS.gene020642:CDS
GTTGTAGTCTTTGGTGTTGA+GGG 0.401069 7.2:+10518603 None:intergenic
CCATATGGTGATGCTGAAAC+TGG 0.403239 7.2:+10516724 None:intergenic
CCAGTTTCAGCATCACCATA+TGG 0.414819 7.2:-10516724 MS.gene020642:CDS
CCGTTTCGATCTGGCTACTT+TGG 0.417395 7.2:-10518423 MS.gene020642:CDS
TTGTGGATGATGTGCCAATA+AGG 0.417399 7.2:-10516939 MS.gene020642:CDS
ACAAAATAGGGCTATGAGTT+GGG 0.435041 7.2:-10516680 MS.gene020642:CDS
TACAATAATTATAAACCATA+TGG 0.435446 7.2:+10516647 None:intergenic
ATTAAACTCACAACAAAATA+GGG 0.447861 7.2:-10516692 MS.gene020642:CDS
AATGTTGTGTCACTCTTCCT+CGG 0.449121 7.2:+10516910 None:intergenic
GAAGTGGACATTGAGTTTCT+TGG 0.452892 7.2:-10518120 MS.gene020642:CDS
ATTTGGCTTGATAGAACCTC+AGG 0.462755 7.2:-10518566 MS.gene020642:intron
AGTGGTGATGGGAAAATTGT+AGG 0.464266 7.2:-10518045 MS.gene020642:CDS
TTTGAACTTGGCCAATAGCC+TGG 0.471985 7.2:+10518671 None:intergenic
TTTGTATATTGTGCAACAAA+TGG 0.475210 7.2:+10516793 None:intergenic
TTGGGTGCAAAGATACCATA+TGG 0.479888 7.2:-10516662 MS.gene020642:CDS
TCATCATGGGCAACAGAAGA+TGG 0.483074 7.2:-10516844 MS.gene020642:CDS
ATGTAAGAGGGAGTGGTGAT+GGG 0.484590 7.2:-10518056 MS.gene020642:CDS
AGCATAGTGATGAAAACCTT+TGG 0.487107 7.2:+10517987 None:intergenic
AACAAAATAGGGCTATGAGT+TGG 0.487818 7.2:-10516681 MS.gene020642:CDS
TATGTAAGAGGGAGTGGTGA+TGG 0.502994 7.2:-10518057 MS.gene020642:CDS
TGTTGTAGTCTTTGGTGTTG+AGG 0.517034 7.2:+10518602 None:intergenic
GCTTATTGGCCACCTTCACC+AGG 0.519429 7.2:-10518689 MS.gene020642:CDS
CAATATGGGATGCTTCATCA+TGG 0.519985 7.2:-10516858 MS.gene020642:CDS
AATGTTTATGTAAGAGGGAG+TGG 0.522067 7.2:-10518063 MS.gene020642:CDS
TTTAATCCACCAGAACCATA+TGG 0.527099 7.2:+10516709 None:intergenic
ATTATGTGTCAGATTTCTTG+TGG 0.531400 7.2:-10516956 MS.gene020642:intron
CTTCAACCTGGTTATACTGC+AGG 0.532390 7.2:-10518387 MS.gene020642:CDS
ATAGACTTGAACTTTGAACT+TGG 0.535880 7.2:+10518659 None:intergenic
CCAAAGTAGCCAGATCGAAA+CGG 0.537510 7.2:+10518423 None:intergenic
CTTTGGTTTGATCCTACCAA+AGG 0.537930 7.2:-10518003 MS.gene020642:CDS
ATGTTGTGTCACTCTTCCTC+GGG 0.544493 7.2:+10516911 None:intergenic
GTGGCTTTATGGTTCAATAT+GGG 0.546084 7.2:-10516872 MS.gene020642:CDS
GCATCACCATATGGTTCTGG+TGG 0.546443 7.2:-10516715 MS.gene020642:CDS
ATAGACTAACACCTGAATGT+TGG 0.555533 7.2:-10516606 MS.gene020642:CDS
TATACAAATTTCAAAGCTAG+TGG 0.558654 7.2:-10516778 MS.gene020642:CDS
TTTGGTGTTGAGGGCCCCAA+CGG 0.560236 7.2:+10518612 None:intergenic
TCAAACAATGAAGCACATCC+TGG 0.560307 7.2:-10518153 MS.gene020642:CDS
AGACCAATGTTTATGTAAGA+GGG 0.563206 7.2:-10518068 MS.gene020642:CDS
GGCCAATAGCCTGGTGAAGG+TGG 0.575508 7.2:+10518680 None:intergenic
TCCACTTCATCATGGTAACC+AGG 0.575746 7.2:+10518135 None:intergenic
ACTCAATGTCCACTTCATCA+TGG 0.586098 7.2:+10518127 None:intergenic
ATGGCACCAACGAGGTGCAT+AGG 0.588771 7.2:+10516747 None:intergenic
TCCTGGTTACCATGATGAAG+TGG 0.598344 7.2:-10518136 MS.gene020642:CDS
TATATTGTGCAACAAATGGT+TGG 0.600462 7.2:+10516797 None:intergenic
GCACAGCCTATGCACCTCGT+TGG 0.605322 7.2:-10516753 MS.gene020642:CDS
TAGTGATGAAAACCTTTGGT+AGG 0.607983 7.2:+10517991 None:intergenic
GCTTCCATTAAGCTTCAACC+TGG 0.609226 7.2:-10518399 MS.gene020642:CDS
AATATGGGATGCTTCATCAT+GGG 0.615655 7.2:-10516857 MS.gene020642:CDS
ATTGAACCATAAAGCCACAT+TGG 0.615958 7.2:+10516877 None:intergenic
ACTCCCTCTTACATAAACAT+TGG 0.616456 7.2:+10518065 None:intergenic
ATAACTCCTGCAGTATAACC+AGG 0.626048 7.2:+10518381 None:intergenic
CATTTCCAATTAGACCAATG+TGG 0.641551 7.2:-10516891 MS.gene020642:CDS
TGCCAATAAGGAGGTACCCG+AGG 0.657088 7.2:-10516927 MS.gene020642:CDS
AGACTAACACCTGAATGTTG+GGG 0.661530 7.2:-10516604 MS.gene020642:CDS
ATGGTGATGCTGAAACTGGA+TGG 0.663075 7.2:+10516728 None:intergenic
CTTGGCCAATAGCCTGGTGA+AGG 0.674426 7.2:+10518677 None:intergenic
TGGATGATGTGCCAATAAGG+AGG 0.722240 7.2:-10516936 MS.gene020642:CDS
GAAACTGGATGGCACCAACG+AGG 0.789191 7.2:+10516739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATGATTGAATTAT+TGG - chr7.2:10517125-10517144 MS.gene020642:intron 10.0%
!! TACTAATAATTAATTAATCT+AGG + chr7.2:10517440-10517459 None:intergenic 10.0%
!!! AGAAAATAATATTTTTTTAG+AGG + chr7.2:10518007-10518026 None:intergenic 10.0%
!!! TATTATTTTCTAAGAAATAA+AGG - chr7.2:10518016-10518035 MS.gene020642:CDS 10.0%
!! TACAATAATTATAAACCATA+TGG + chr7.2:10518663-10518682 None:intergenic 15.0%
!!! TATTGTCATTGTTTTTTTTA+TGG - chr7.2:10516828-10516847 MS.gene020642:CDS 15.0%
!!! TGATATTTTGGAATTTTTTA+AGG - chr7.2:10517945-10517964 MS.gene020642:intron 15.0%
!!! TTTTTTTTATGGTAAAAAAC+AGG - chr7.2:10516839-10516858 MS.gene020642:CDS 15.0%
!! AAATCGAATGGTTTATATTA+AGG + chr7.2:10517748-10517767 None:intergenic 20.0%
!! AACAAAATGCATTAACTATT+TGG - chr7.2:10516724-10516743 MS.gene020642:CDS 20.0%
!! ATTAAACTCACAACAAAATA+GGG - chr7.2:10518615-10518634 MS.gene020642:CDS 20.0%
!! CATATAGAAATACTAAATCA+AGG - chr7.2:10518089-10518108 MS.gene020642:CDS 20.0%
!! TAACTATATATAGTGATTCT+TGG - chr7.2:10517788-10517807 MS.gene020642:intron 20.0%
!! TTATATTAAGGTCAACAAAT+CGG + chr7.2:10517736-10517755 None:intergenic 20.0%
!!! AATCTAAAATAGTACTGTAT+AGG - chr7.2:10517462-10517481 MS.gene020642:intron 20.0%
!!! ACATAAGATTTTTTTAACCA+TGG - chr7.2:10517644-10517663 MS.gene020642:intron 20.0%
!!! ATCTAAAATAGTACTGTATA+GGG - chr7.2:10517463-10517482 MS.gene020642:intron 20.0%
!!! TTCTTAACTTTTCATTAGTT+GGG + chr7.2:10518187-10518206 None:intergenic 20.0%
!!! TTTCTTAACTTTTCATTAGT+TGG + chr7.2:10518188-10518207 None:intergenic 20.0%
! AAAATCATAACATAGAAGTG+TGG - chr7.2:10518128-10518147 MS.gene020642:CDS 25.0%
! AAACCATTGATAAAATCGAA+TGG + chr7.2:10517760-10517779 None:intergenic 25.0%
! ATCAATTGGTATCAAAGTTT+AGG - chr7.2:10517912-10517931 MS.gene020642:intron 25.0%
! GATTAAACTCACAACAAAAT+AGG - chr7.2:10518614-10518633 MS.gene020642:CDS 25.0%
! TATACAAATTTCAAAGCTAG+TGG - chr7.2:10518529-10518548 MS.gene020642:intron 25.0%
! TTCTAACCATTGATATAGAT+CGG - chr7.2:10517700-10517719 MS.gene020642:intron 25.0%
! TTTGTATATTGTGCAACAAA+TGG + chr7.2:10518517-10518536 None:intergenic 25.0%
!! AAACCATTCGATTTTATCAA+TGG - chr7.2:10517754-10517773 MS.gene020642:intron 25.0%
!! AAATCATAACATAGAAGTGT+GGG - chr7.2:10518129-10518148 MS.gene020642:CDS 25.0%
!! AAGTCTATGAACTTTTACAA+AGG - chr7.2:10516663-10516682 MS.gene020642:CDS 25.0%
!! ATTCGATTTTATCAATGGTT+TGG - chr7.2:10517759-10517778 MS.gene020642:intron 25.0%
!! TTAGTCTATGATCTCTTTTT+GGG + chr7.2:10518690-10518709 None:intergenic 25.0%
!! TTCTAAGAAATAAAGGAAGA+AGG - chr7.2:10518023-10518042 MS.gene020642:CDS 25.0%
!! TTGATTGGTTCTTTATCAAT+TGG - chr7.2:10517898-10517917 MS.gene020642:intron 25.0%
!!! AGATTTTTTTAACCATGGTT+TGG - chr7.2:10517649-10517668 MS.gene020642:intron 25.0%
!!! TTTTGGAATTTTTTAAGGAG+TGG - chr7.2:10517950-10517969 MS.gene020642:intron 25.0%
AGACCAATGTTTATGTAAGA+GGG - chr7.2:10517239-10517258 MS.gene020642:intron 30.0%
ATAAAGGAAGAAGGCAAATA+AGG - chr7.2:10518032-10518051 MS.gene020642:CDS 30.0%
ATAGACTTGAACTTTGAACT+TGG + chr7.2:10516651-10516670 None:intergenic 30.0%
ATTATGTGTCAGATTTCTTG+TGG - chr7.2:10518351-10518370 MS.gene020642:intron 30.0%
CATTGTCCAATCTTAATCAA+TGG + chr7.2:10517595-10517614 None:intergenic 30.0%
GAGAAATGAAGTTTCATCTT+TGG - chr7.2:10517287-10517306 MS.gene020642:intron 30.0%
GTGACTTACATTATCTCTTT+AGG + chr7.2:10517358-10517377 None:intergenic 30.0%
TATATTGTGCAACAAATGGT+TGG + chr7.2:10518513-10518532 None:intergenic 30.0%
TTATGGTAAAAAACAGGAAG+TGG - chr7.2:10516845-10516864 MS.gene020642:CDS 30.0%
TTCATCACTATGCTATACTA+TGG - chr7.2:10517329-10517348 MS.gene020642:intron 30.0%
! AACAGGAAGTGGATTTAAAT+CGG - chr7.2:10516856-10516875 MS.gene020642:CDS 30.0%
! AATCATAACATAGAAGTGTG+GGG - chr7.2:10518130-10518149 MS.gene020642:CDS 30.0%
! CATTGATTAAGATTGGACAA+TGG - chr7.2:10517593-10517612 MS.gene020642:intron 30.0%
! GGCAAGACTTAATGATATTT+TGG - chr7.2:10517933-10517952 MS.gene020642:intron 30.0%
! TAGAGAAAACTACATTTTCG+AGG + chr7.2:10517046-10517065 None:intergenic 30.0%
! TCTCTTTTGATGAGGTATAT+AGG - chr7.2:10517510-10517529 MS.gene020642:intron 30.0%
!! ATGCATTTTGTTGTAGTCTT+TGG + chr7.2:10516716-10516735 None:intergenic 30.0%
!! CATTTTCAAGCAATGCTTAT+TGG - chr7.2:10516604-10516623 MS.gene020642:CDS 30.0%
!! GTTAGTCTATGATCTCTTTT+TGG + chr7.2:10518691-10518710 None:intergenic 30.0%
AACAAAATAGGGCTATGAGT+TGG - chr7.2:10518626-10518645 MS.gene020642:CDS 35.0%
AATATGGGATGCTTCATCAT+GGG - chr7.2:10518450-10518469 MS.gene020642:intron 35.0%
AATGTTTATGTAAGAGGGAG+TGG - chr7.2:10517244-10517263 MS.gene020642:intron 35.0%
ACAAAATAGGGCTATGAGTT+GGG - chr7.2:10518627-10518646 MS.gene020642:CDS 35.0%
ACTCCCTCTTACATAAACAT+TGG + chr7.2:10517245-10517264 None:intergenic 35.0%
AGCATAGTGATGAAAACCTT+TGG + chr7.2:10517323-10517342 None:intergenic 35.0%
ATAGACTAACACCTGAATGT+TGG - chr7.2:10518701-10518720 MS.gene020642:CDS 35.0%
ATATAGGTGTGATAGGGAAA+TGG - chr7.2:10517526-10517545 MS.gene020642:intron 35.0%
ATGAGGTATATAGGTGTGAT+AGG - chr7.2:10517519-10517538 MS.gene020642:intron 35.0%
ATTGAACCATAAAGCCACAT+TGG + chr7.2:10518433-10518452 None:intergenic 35.0%
CAGACCAATGTTTATGTAAG+AGG - chr7.2:10517238-10517257 MS.gene020642:intron 35.0%
CATTTCCAATTAGACCAATG+TGG - chr7.2:10518416-10518435 MS.gene020642:CDS 35.0%
CTAAATCAAGGTCACATGAA+TGG - chr7.2:10518101-10518120 MS.gene020642:CDS 35.0%
GACTATCCGATCTATATCAA+TGG + chr7.2:10517709-10517728 None:intergenic 35.0%
GAGTTTCTTGGAACAACATT+TGG - chr7.2:10517199-10517218 MS.gene020642:intron 35.0%
TAGACTAACACCTGAATGTT+GGG - chr7.2:10518702-10518721 MS.gene020642:CDS 35.0%
TAGTGATGAAAACCTTTGGT+AGG + chr7.2:10517319-10517338 None:intergenic 35.0%
TGAGGTATATAGGTGTGATA+GGG - chr7.2:10517520-10517539 MS.gene020642:intron 35.0%
TGTCCAATCTTAATCAATGG+TGG + chr7.2:10517592-10517611 None:intergenic 35.0%
TTCATGAAACTAAGTGCCAA+TGG + chr7.2:10516995-10517014 None:intergenic 35.0%
TTTAAGGAGTGGAAAATGAG+AGG - chr7.2:10517961-10517980 MS.gene020642:CDS 35.0%
TTTAATCCACCAGAACCATA+TGG + chr7.2:10518601-10518620 None:intergenic 35.0%
TTTCACATTCAGAGACATTG+AGG + chr7.2:10517405-10517424 None:intergenic 35.0%
! AAAGGTTTTACAAACCGTTG+GGG - chr7.2:10516681-10516700 MS.gene020642:CDS 35.0%
! ACAAAGGTTTTACAAACCGT+TGG - chr7.2:10516679-10516698 MS.gene020642:CDS 35.0%
! ACATTGGTCTGCAAAGTATA+AGG + chr7.2:10517229-10517248 None:intergenic 35.0%
! AGCTTTTTGAACGTTACTAC+TGG + chr7.2:10518266-10518285 None:intergenic 35.0%
! ATAACCAGGTTGAAGCTTAA+TGG + chr7.2:10516915-10516934 None:intergenic 35.0%
! ATTAGACCAATGTGGCTTTA+TGG - chr7.2:10518424-10518443 MS.gene020642:CDS 35.0%
! CAAAGGTTTTACAAACCGTT+GGG - chr7.2:10516680-10516699 MS.gene020642:CDS 35.0%
! CACTACTTTCTCTTTTGATG+AGG - chr7.2:10517502-10517521 MS.gene020642:intron 35.0%
! TAAAGCCACATTGGTCTAAT+TGG + chr7.2:10518424-10518443 None:intergenic 35.0%
! TCTCCACCATTGATTAAGAT+TGG - chr7.2:10517586-10517605 MS.gene020642:intron 35.0%
!! GTGGCTTTATGGTTCAATAT+GGG - chr7.2:10518435-10518454 MS.gene020642:CDS 35.0%
!! TGTGGCTTTATGGTTCAATA+TGG - chr7.2:10518434-10518453 MS.gene020642:CDS 35.0%
!! TTTTAACCATGGTTTGGACT+TGG - chr7.2:10517655-10517674 MS.gene020642:intron 35.0%
AAGGCAAATAAGGATGTGAC+AGG - chr7.2:10518042-10518061 MS.gene020642:CDS 40.0%
ACTCAATGTCCACTTCATCA+TGG + chr7.2:10517183-10517202 None:intergenic 40.0%
AGACTAACACCTGAATGTTG+GGG - chr7.2:10518703-10518722 MS.gene020642:CDS 40.0%
AGAGAATCCACAATTGAGCT+TGG - chr7.2:10517854-10517873 MS.gene020642:intron 40.0%
ATAACTCCTGCAGTATAACC+AGG + chr7.2:10516929-10516948 None:intergenic 40.0%
ATTGAGCTTGGATTCTGCTT+AGG - chr7.2:10517866-10517885 MS.gene020642:intron 40.0%
CAATATGGGATGCTTCATCA+TGG - chr7.2:10518449-10518468 MS.gene020642:CDS 40.0%
CATGACATGCATGTTTCCAT+TGG - chr7.2:10516976-10516995 MS.gene020642:intron 40.0%
CTTAGGTGGCATTGTTTGAT+TGG - chr7.2:10517883-10517902 MS.gene020642:intron 40.0%
GAAGTGGACATTGAGTTTCT+TGG - chr7.2:10517187-10517206 MS.gene020642:intron 40.0%
TAATCACCAAGTCCAAACCA+TGG + chr7.2:10517664-10517683 None:intergenic 40.0%
TCAAACAATGAAGCACATCC+TGG - chr7.2:10517154-10517173 MS.gene020642:intron 40.0%
TTGGGTGCAAAGATACCATA+TGG - chr7.2:10518645-10518664 MS.gene020642:CDS 40.0%
TTGTGGATGATGTGCCAATA+AGG - chr7.2:10518368-10518387 MS.gene020642:CDS 40.0%
! AATGTTGTGTCACTCTTCCT+CGG + chr7.2:10518400-10518419 None:intergenic 40.0%
! TACTGTATAGGGTACTAGAC+AGG - chr7.2:10517474-10517493 MS.gene020642:intron 40.0%
!! AGTGGTGATGGGAAAATTGT+AGG - chr7.2:10517262-10517281 MS.gene020642:intron 40.0%
!! ATTTGGCTTGATAGAACCTC+AGG - chr7.2:10516741-10516760 MS.gene020642:CDS 40.0%
!! CTTTGGTTTGATCCTACCAA+AGG - chr7.2:10517304-10517323 MS.gene020642:intron 40.0%
!! GTTGTAGTCTTTGGTGTTGA+GGG + chr7.2:10516707-10516726 None:intergenic 40.0%
!! TGTTGTAGTCTTTGGTGTTG+AGG + chr7.2:10516708-10516727 None:intergenic 40.0%
ATGATCAGACTCAGAACCTG+AGG + chr7.2:10516760-10516779 None:intergenic 45.0%
ATGTAAGAGGGAGTGGTGAT+GGG - chr7.2:10517251-10517270 MS.gene020642:intron 45.0%
CCAAAGTAGCCAGATCGAAA+CGG + chr7.2:10516887-10516906 None:intergenic 45.0%
CCAGTTTCAGCATCACCATA+TGG - chr7.2:10518583-10518602 MS.gene020642:CDS 45.0%
CTTCAACCTGGTTATACTGC+AGG - chr7.2:10516920-10516939 MS.gene020642:CDS 45.0%
GCAGAATCCAAGCTCAATTG+TGG + chr7.2:10517864-10517883 None:intergenic 45.0%
GCTTCCATTAAGCTTCAACC+TGG - chr7.2:10516908-10516927 MS.gene020642:CDS 45.0%
TATGTAAGAGGGAGTGGTGA+TGG - chr7.2:10517250-10517269 MS.gene020642:intron 45.0%
TCAGCATCACCATATGGTTC+TGG - chr7.2:10518589-10518608 MS.gene020642:CDS 45.0%
TCATCATGGGCAACAGAAGA+TGG - chr7.2:10518463-10518482 MS.gene020642:intron 45.0%
TCCACTTCATCATGGTAACC+AGG + chr7.2:10517175-10517194 None:intergenic 45.0%
TCCTGGTTACCATGATGAAG+TGG - chr7.2:10517171-10517190 MS.gene020642:intron 45.0%
TGGATGATGTGCCAATAAGG+AGG - chr7.2:10518371-10518390 MS.gene020642:CDS 45.0%
TTTGAACTTGGCCAATAGCC+TGG + chr7.2:10516639-10516658 None:intergenic 45.0%
! ATGGTGATGCTGAAACTGGA+TGG + chr7.2:10518582-10518601 None:intergenic 45.0%
! ATGTTGTGTCACTCTTCCTC+GGG + chr7.2:10518399-10518418 None:intergenic 45.0%
! CCATATGGTGATGCTGAAAC+TGG + chr7.2:10518586-10518605 None:intergenic 45.0%
CCGTTTCGATCTGGCTACTT+TGG - chr7.2:10516884-10516903 MS.gene020642:CDS 50.0%
GAGCTTGGATTCTGCTTAGG+TGG - chr7.2:10517869-10517888 MS.gene020642:intron 50.0%
GGTGGAGATCGTAACTGTAG+TGG + chr7.2:10517574-10517593 None:intergenic 50.0%
TTCCTCGGGTACCTCCTTAT+TGG + chr7.2:10518385-10518404 None:intergenic 50.0%
!! GCATCACCATATGGTTCTGG+TGG - chr7.2:10518592-10518611 MS.gene020642:CDS 50.0%
ATGGCACCAACGAGGTGCAT+AGG + chr7.2:10518563-10518582 None:intergenic 55.0%
CTTGGCCAATAGCCTGGTGA+AGG + chr7.2:10516633-10516652 None:intergenic 55.0%
GAAACTGGATGGCACCAACG+AGG + chr7.2:10518571-10518590 None:intergenic 55.0%
GCTTATTGGCCACCTTCACC+AGG - chr7.2:10516618-10516637 MS.gene020642:CDS 55.0%
! TCGGTTCGTCCGTTTCGATC+TGG - chr7.2:10516875-10516894 MS.gene020642:CDS 55.0%
!! TGCCAATAAGGAGGTACCCG+AGG - chr7.2:10518380-10518399 MS.gene020642:CDS 55.0%
!! TTTGGTGTTGAGGGCCCCAA+CGG + chr7.2:10516698-10516717 None:intergenic 55.0%
GCACAGCCTATGCACCTCGT+TGG - chr7.2:10518554-10518573 MS.gene020642:intron 60.0%
GGCCAATAGCCTGGTGAAGG+TGG + chr7.2:10516630-10516649 None:intergenic 60.0%
GGCCACCTTCACCAGGCTAT+TGG - chr7.2:10516625-10516644 MS.gene020642:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 10516600 10518729 10516600 ID=MS.gene020642
chr7.2 mRNA 10516600 10518729 10516600 ID=MS.gene020642.t1;Parent=MS.gene020642
chr7.2 exon 10518567 10518729 10518567 ID=MS.gene020642.t1.exon1;Parent=MS.gene020642.t1
chr7.2 CDS 10518567 10518729 10518567 ID=cds.MS.gene020642.t1;Parent=MS.gene020642.t1
chr7.2 exon 10518368 10518468 10518368 ID=MS.gene020642.t1.exon2;Parent=MS.gene020642.t1
chr7.2 CDS 10518368 10518468 10518368 ID=cds.MS.gene020642.t1;Parent=MS.gene020642.t1
chr7.2 exon 10517961 10518178 10517961 ID=MS.gene020642.t1.exon3;Parent=MS.gene020642.t1
chr7.2 CDS 10517961 10518178 10517961 ID=cds.MS.gene020642.t1;Parent=MS.gene020642.t1
chr7.2 exon 10516600 10516966 10516600 ID=MS.gene020642.t1.exon4;Parent=MS.gene020642.t1
chr7.2 CDS 10516600 10516966 10516600 ID=cds.MS.gene020642.t1;Parent=MS.gene020642.t1
Gene Sequence

>MS.gene020642

ATGACATTTTCAAGCAATGCTTATTGGCCACCTTCACCAGGCTATTGGCCAAGTTCAAAGTTCAAGTCTATGAACTTTTACAAAGGTTTTACAAACCGTTGGGGCCCTCAACACCAAAGACTACAACAAAATGCATTAACTATTTGGCTTGATAGAACCTCAGGTTCTGAGTCTGATCATCAGTTACATGAGTTTTCTGCTTCTTGTTAAATATCATTGAAATTTAATTATTGTCATTGTTTTTTTTATGGTAAAAAACAGGAAGTGGATTTAAATCGGTTCGTCCGTTTCGATCTGGCTACTTTGGTGCTTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACATCTTTCTATGTAAGATGTTACAGCATGACATGCATGTTTCCATTGGCACTTAGTTTCATGAAATTACGATGACACTGTGATTTTGTTGAACCTCGAAAATGTAGTTTTCTCTAGAAAGATTGTTATAGCTTATACATTTTGTTTAGATTGTTAATTACTATTAGCACTAATGATAATTAATGATTGAATTATTGGCAGCTATCAAACAATGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTTGGAACAACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATGTAAGAGGGAGTGGTGATGGGAAAATTGTAGGTAGAGAAATGAAGTTTCATCTTTGGTTTGATCCTACCAAAGGTTTTCATCACTATGCTATACTATGGAGTCCTAAAGAGATAATGTAAGTCACTGTATAATTTAATTATATTATATTCCTCAATGTCTCTGAATGTGAAATTGAATTGAATGCCTAGATTAATTAATTATTAGTAATAATCTAAAATAGTACTGTATAGGGTACTAGACAGGACATGCACTACTTTCTCTTTTGATGAGGTATATAGGTGTGATAGGGAAATGGACTTACATATGCACTCAATAGTCCACTACAGTTACGATCTCCACCATTGATTAAGATTGGACAATGGAGACTGATTGTTGAACTTATAATTGAACACATAAGATTTTTTTAACCATGGTTTGGACTTGGTGATTATAGTGACTCTTGAAAATTCTAACCATTGATATAGATCGGATAGTCGAGACCGATTTGTTGACCTTAATATAAACCATTCGATTTTATCAATGGTTTGGATTAGCTAACTATATATAGTGATTCTTGGAAATTATGAGAGCATGAAATCTGATTTGCAAGATAAGAGATGAAGAGAATCCACAATTGAGCTTGGATTCTGCTTAGGTGGCATTGTTTGATTGGTTCTTTATCAATTGGTATCAAAGTTTAGGCAAGACTTAATGATATTTTGGAATTTTTTAAGGAGTGGAAAATGAGAGGATAACAACATAATTTTCTATCCTCTAAAAAAATATTATTTTCTAAGAAATAAAGGAAGAAGGCAAATAAGGATGTGACAGGATTAAAATTAGTGTAAATCATAATCATATAGAAATACTAAATCAAGGTCACATGAATGGCACAAAAATCATAACATAGAAGTGTGGGGAAACAAATAGTATGATAGTAGCAGTGTAGCACCCAACTAATGAAAAGTTAAGAAAGTGACAGTAAATTTATTTTATTTATGAAAGATTAAAACTACTGTATATACTAATACCAGTAGTAACGTTCAAAAAGCTGTAGCTATTATATGAATCATAGAAATGATTATTAATACTATATAGTTGCTTTATACTGACATTAAATTATGTGTCAGATTTCTTGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGACACAACATTTCCAATTAGACCAATGTGGCTTTATGGTTCAATATGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAGATACCAACCATTTGTTGCACAATATACAAATTTCAAAGCTAGTGGTTGCACAGCCTATGCACCTCGTTGGTGCCATCCAGTTTCAGCATCACCATATGGTTCTGGTGGATTAAACTCACAACAAAATAGGGCTATGAGTTGGGTGCAAAGATACCATATGGTTTATAATTATTGTAGAGACCCAAAAAGAGATCATAGACTAACACCTGAATGTTGGGGTTAA
Protein sequence

>MS.gene020642.t1

MTFSSNAYWPPSPGYWPSSKFKSMNFYKGFTNRWGPQHQRLQQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITSFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYVRGSGDGKIVGREMKFHLWFDPTKGFHHYAILWSPKEIIFLVDDVPIRRYPRKSDTTFPIRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAQYTNFKASGCTAYAPRWCHPVSASPYGSGGLNSQQNRAMSWVQRYHMVYNYCRDPKRDHRLTPECWG