Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020842.t1 | XP_003617895.1 | 98.6 | 357 | 5 | 0 | 1 | 357 | 1 | 357 | 4.00E-197 | 697.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020842.t1 | P46256 | 96.9 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 1.1e-195 | 683.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020842.t1 | G7K4T4 | 98.6 | 357 | 5 | 0 | 1 | 357 | 1 | 357 | 2.9e-197 | 697.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062923 | MS.gene020842 | PPI |
| MS.gene062925 | MS.gene020842 | PPI |
| MS.gene50709 | MS.gene020842 | PPI |
| MS.gene020842 | MS.gene50712 | PPI |
| MS.gene003645 | MS.gene020842 | PPI |
| MS.gene23352 | MS.gene020842 | PPI |
| MS.gene23350 | MS.gene020842 | PPI |
| MS.gene003647 | MS.gene020842 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020842.t1 | MTR_5g096670 | 98.599 | 357 | 5 | 0 | 1 | 357 | 1 | 357 | 0.0 | 723 |
| MS.gene020842.t1 | MTR_5g069055 | 78.212 | 358 | 77 | 1 | 1 | 357 | 1 | 358 | 0.0 | 582 |
| MS.gene020842.t1 | MTR_1g061050 | 77.374 | 358 | 80 | 1 | 1 | 357 | 1 | 358 | 0.0 | 570 |
| MS.gene020842.t1 | MTR_5g069050 | 74.212 | 349 | 74 | 2 | 10 | 357 | 51 | 384 | 0.0 | 526 |
| MS.gene020842.t1 | MTR_4g057670 | 57.507 | 353 | 146 | 3 | 6 | 357 | 51 | 400 | 2.64e-138 | 399 |
| MS.gene020842.t1 | MTR_4g071860 | 57.507 | 353 | 146 | 3 | 6 | 357 | 51 | 400 | 3.36e-138 | 399 |
| MS.gene020842.t1 | MTR_1g109200 | 55.840 | 351 | 151 | 3 | 8 | 357 | 44 | 391 | 4.92e-136 | 393 |
| MS.gene020842.t1 | MTR_4g071880 | 51.404 | 356 | 151 | 5 | 6 | 357 | 49 | 386 | 2.61e-115 | 340 |
| MS.gene020842.t1 | MTR_7g103920 | 64.583 | 96 | 9 | 1 | 112 | 207 | 11 | 81 | 3.59e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020842.t1 | AT4G26530 | 86.592 | 358 | 47 | 1 | 1 | 357 | 1 | 358 | 0.0 | 634 |
| MS.gene020842.t1 | AT4G26530 | 86.592 | 358 | 47 | 1 | 1 | 357 | 1 | 358 | 0.0 | 634 |
| MS.gene020842.t1 | AT4G26530 | 86.592 | 358 | 47 | 1 | 1 | 357 | 1 | 358 | 0.0 | 634 |
| MS.gene020842.t1 | AT2G36460 | 79.609 | 358 | 72 | 1 | 1 | 357 | 1 | 358 | 0.0 | 587 |
| MS.gene020842.t1 | AT3G52930 | 80.447 | 358 | 69 | 1 | 1 | 357 | 1 | 358 | 0.0 | 586 |
| MS.gene020842.t1 | AT4G26520 | 79.330 | 358 | 73 | 1 | 1 | 357 | 1 | 358 | 0.0 | 575 |
| MS.gene020842.t1 | AT4G26520 | 79.494 | 356 | 72 | 1 | 1 | 355 | 1 | 356 | 0.0 | 571 |
| MS.gene020842.t1 | AT4G26520 | 79.143 | 350 | 72 | 1 | 9 | 357 | 6 | 355 | 0.0 | 561 |
| MS.gene020842.t1 | AT4G26520 | 79.143 | 350 | 72 | 1 | 9 | 357 | 6 | 355 | 0.0 | 561 |
| MS.gene020842.t1 | AT5G03690 | 76.045 | 359 | 84 | 2 | 1 | 357 | 1 | 359 | 0.0 | 540 |
| MS.gene020842.t1 | AT5G03690 | 76.504 | 349 | 80 | 2 | 11 | 357 | 45 | 393 | 0.0 | 528 |
| MS.gene020842.t1 | AT2G36460 | 79.026 | 267 | 55 | 1 | 92 | 357 | 1 | 267 | 2.56e-155 | 437 |
| MS.gene020842.t1 | AT2G36460 | 79.026 | 267 | 55 | 1 | 92 | 357 | 1 | 267 | 2.56e-155 | 437 |
| MS.gene020842.t1 | AT5G03690 | 76.404 | 267 | 61 | 2 | 93 | 357 | 1 | 267 | 4.26e-139 | 396 |
| MS.gene020842.t1 | AT5G03690 | 76.404 | 267 | 61 | 2 | 93 | 357 | 1 | 267 | 4.26e-139 | 396 |
| MS.gene020842.t1 | AT4G38970 | 57.550 | 351 | 145 | 3 | 8 | 357 | 51 | 398 | 5.03e-139 | 400 |
| MS.gene020842.t1 | AT2G21330 | 56.695 | 351 | 148 | 3 | 8 | 357 | 52 | 399 | 4.72e-138 | 398 |
| MS.gene020842.t1 | AT2G01140 | 55.524 | 353 | 153 | 3 | 6 | 357 | 42 | 391 | 8.70e-136 | 392 |
| MS.gene020842.t1 | AT2G21330 | 54.701 | 351 | 145 | 4 | 8 | 357 | 52 | 389 | 3.39e-129 | 375 |
| MS.gene020842.t1 | AT4G38970 | 57.588 | 257 | 107 | 2 | 8 | 263 | 51 | 306 | 2.06e-99 | 299 |
| MS.gene020842.t1 | AT2G21330 | 56.031 | 257 | 111 | 2 | 8 | 263 | 52 | 307 | 2.47e-98 | 294 |
Find 119 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACACTTTCGTTCTCATT+TGG | 0.289922 | 5.4:+75720949 | MS.gene020842:CDS |
| TAAAGCTCAAGAGGTATTTC+TGG | 0.290855 | 5.4:+75721029 | MS.gene020842:CDS |
| TGTTAAGGACTATAAGTATT+AGG | 0.314080 | 5.4:+75721134 | MS.gene020842:CDS |
| GCTTCCCATCGGAGGAATTC+TGG | 0.334173 | 5.4:-75720029 | None:intergenic |
| TTCTGAGAGTTTATATGTTA+AGG | 0.341237 | 5.4:+75721119 | MS.gene020842:CDS |
| TTCAGTGACAGCAGCGCATT+TGG | 0.358382 | 5.4:-75720373 | None:intergenic |
| GGACACTTTCGTTCTCATTT+GGG | 0.360833 | 5.4:+75720950 | MS.gene020842:CDS |
| GACAACTCAGAGGGCTCATT+GGG | 0.363446 | 5.4:-75720240 | None:intergenic |
| ACAATCCCCGGTACCGCGGC+TGG | 0.363608 | 5.4:-75720847 | None:intergenic |
| TATGGTGGTGGAAGTGGAAC+TGG | 0.368319 | 5.4:+75721090 | MS.gene020842:CDS |
| ATCATTCAGTGCCTTGTAAC+AGG | 0.375839 | 5.4:-75720409 | None:intergenic |
| GGATGACACCGGAGAGGTAT+TGG | 0.377053 | 5.4:-75719987 | None:intergenic |
| GCCAGGGGTGGCTATGTACT+TGG | 0.377454 | 5.4:-75719836 | None:intergenic |
| AACTGTCCCAGCCGCGGTAC+CGG | 0.386545 | 5.4:+75720840 | MS.gene020842:CDS |
| GAAGCTACTCTAGGCAAATA+TGG | 0.391926 | 5.4:+75721072 | MS.gene020842:CDS |
| CCAGCAAAACGCACAGGGCT+TGG | 0.395404 | 5.4:+75720266 | MS.gene020842:CDS |
| CTGGTATGACATTGTTCTCT+TGG | 0.404955 | 5.4:-75720068 | None:intergenic |
| CCCTTGTCAACTTTGATGCC+TGG | 0.408200 | 5.4:-75720087 | None:intergenic |
| GGCAAATATGGTGGTGGAAG+TGG | 0.408704 | 5.4:+75721084 | MS.gene020842:CDS |
| AAAATCTCAGGCTCAACAAT+AGG | 0.410743 | 5.4:-75720327 | None:intergenic |
| CACCCCTGGCAAGGGTATCT+TGG | 0.410912 | 5.4:+75719849 | MS.gene020842:CDS |
| GCCTAGAGTAGCTTCAGAAT+TGG | 0.410977 | 5.4:-75721064 | None:intergenic |
| GTATGACATTGTTCTCTTGG+AGG | 0.415484 | 5.4:-75720065 | None:intergenic |
| CTCCGGCCTTGTAGTACTGC+TGG | 0.419506 | 5.4:-75720179 | None:intergenic |
| GAACCTGGAGTAACCATGTT+AGG | 0.426285 | 5.4:-75720465 | None:intergenic |
| CTCCGGTGTCATCCTCTTTG+AGG | 0.427295 | 5.4:+75719996 | MS.gene020842:CDS |
| TCTTGGAGGATTTCAACAAA+AGG | 0.428975 | 5.4:-75720051 | None:intergenic |
| GATCCATCGGTTAAAATCTC+AGG | 0.430763 | 5.4:-75720339 | None:intergenic |
| CAAAGCATGTCGGCCTTTGT+TGG | 0.432883 | 5.4:+75719402 | None:intergenic |
| AGACAACTCAGAGGGCTCAT+TGG | 0.443250 | 5.4:-75720241 | None:intergenic |
| GATCAGCATGTCCTTCTTGA+AGG | 0.445985 | 5.4:+75720429 | MS.gene020842:CDS |
| GAGAGGTATTGGAGTGCATT+GGG | 0.455590 | 5.4:-75719976 | None:intergenic |
| CCGGGGATTGTATTTCTGTC+AGG | 0.472014 | 5.4:+75720859 | MS.gene020842:CDS |
| ACTGTCCCAGCCGCGGTACC+GGG | 0.479499 | 5.4:+75720841 | MS.gene020842:CDS |
| AGCACACTCAAGACATGGGC+TGG | 0.480358 | 5.4:+75720988 | MS.gene020842:CDS |
| CTTGAGTACCGCACGCCACT+TGG | 0.484408 | 5.4:-75720211 | None:intergenic |
| GCCTTTGTTGGAAAGTATGC+AGG | 0.487704 | 5.4:+75719414 | MS.gene020842:CDS |
| AAGGGTGTTGTTGAATTAGC+TGG | 0.490593 | 5.4:+75720105 | MS.gene020842:CDS |
| GCTGCCAAGATACCCTTGCC+AGG | 0.495182 | 5.4:-75719853 | None:intergenic |
| TTCACGGAGGGCTTGACGGT+TGG | 0.495893 | 5.4:-75719938 | None:intergenic |
| GTCTATCCAGCAAAACGCAC+AGG | 0.499555 | 5.4:+75720260 | MS.gene020842:CDS |
| GAAGTTCACGGAGGGCTTGA+CGG | 0.504237 | 5.4:-75719942 | None:intergenic |
| TCCAAGAGAGTCAAAACCTT+GGG | 0.506085 | 5.4:-75720148 | None:intergenic |
| GCCATTCTCCTGGCAAATGA+TGG | 0.507357 | 5.4:-75720298 | None:intergenic |
| TGGCGTGCGGTACTCAAGAT+TGG | 0.507577 | 5.4:+75720216 | MS.gene020842:CDS |
| GATGAGAGCACTGGAACCAT+TGG | 0.508526 | 5.4:+75719877 | MS.gene020842:CDS |
| GTTGAATTAGCTGGAACAAA+TGG | 0.509964 | 5.4:+75720114 | MS.gene020842:CDS |
| ACCTTTGGGCTATCAGAACC+TGG | 0.510328 | 5.4:-75720480 | None:intergenic |
| GCCATCATTTGCCAGGAGAA+TGG | 0.511001 | 5.4:+75720297 | MS.gene020842:CDS |
| GGAGAGGTATTGGAGTGCAT+TGG | 0.512442 | 5.4:-75719977 | None:intergenic |
| CTGCCAAGATACCCTTGCCA+GGG | 0.516454 | 5.4:-75719852 | None:intergenic |
| TAGGCACAAGGCCATTCTCC+TGG | 0.518706 | 5.4:-75720308 | None:intergenic |
| TCGCTACGCCATCATTTGCC+AGG | 0.522141 | 5.4:+75720290 | MS.gene020842:CDS |
| GTATTGGAGTGCATTGGGAG+AGG | 0.525633 | 5.4:-75719971 | None:intergenic |
| AGGTGGACAAAGTGAAGAGC+AGG | 0.526814 | 5.4:+75720879 | MS.gene020842:CDS |
| CAATCCCCGGTACCGCGGCT+GGG | 0.528479 | 5.4:-75720846 | None:intergenic |
| TGGTGGAAGTGGAACTGGGT+TGG | 0.532441 | 5.4:+75721095 | MS.gene020842:CDS |
| AGCTAGATGTTGTGAAGCCA+TGG | 0.532979 | 5.4:+75720929 | MS.gene020842:CDS |
| GAGAGGTGAAGAGAAGTTCA+CGG | 0.536141 | 5.4:-75719954 | None:intergenic |
| CAGGTATCACCTGAGGTGAT+TGG | 0.538803 | 5.4:+75720790 | MS.gene020842:intron |
| CCACTTGGCAAACCGTGCTC+CGG | 0.542305 | 5.4:-75720196 | None:intergenic |
| GGCGATGTCATGAGATCCAT+CGG | 0.542710 | 5.4:-75720352 | None:intergenic |
| AGCAAAGCACACTCAAGACA+TGG | 0.549591 | 5.4:+75720983 | MS.gene020842:CDS |
| TGAGAAGAGTTCCTTCAAGA+AGG | 0.549810 | 5.4:-75720440 | None:intergenic |
| TACATAGCCACCCCTGGCAA+GGG | 0.556199 | 5.4:+75719841 | MS.gene020842:CDS |
| GGTAAAGAGTTTCCTCAAAG+AGG | 0.556676 | 5.4:-75720008 | None:intergenic |
| CAAGAGAACAATGTCATACC+AGG | 0.556695 | 5.4:+75720069 | MS.gene020842:CDS |
| GCTTGCTAGACGCTTGCCAA+TGG | 0.565429 | 5.4:-75719893 | None:intergenic |
| AAGCCTAACATGGTTACTCC+AGG | 0.566895 | 5.4:+75720462 | MS.gene020842:CDS |
| CTGTCCCAGCCGCGGTACCG+GGG | 0.567758 | 5.4:+75720842 | MS.gene020842:CDS |
| CTCCAAGAGAGTCAAAACCT+TGG | 0.567895 | 5.4:-75720149 | None:intergenic |
| AATGCACTCCAATACCTCTC+CGG | 0.571465 | 5.4:+75719979 | MS.gene020842:CDS |
| GTACATAGCCACCCCTGGCA+AGG | 0.572440 | 5.4:+75719840 | MS.gene020842:CDS |
| GCCAAGTACATAGCCACCCC+TGG | 0.573393 | 5.4:+75719835 | MS.gene020842:CDS |
| TGCCAGCAGTACTACAAGGC+CGG | 0.573670 | 5.4:+75720177 | MS.gene020842:CDS |
| TGTGCTTGCAGCCTGTTACA+AGG | 0.574695 | 5.4:+75720398 | MS.gene020842:CDS |
| AACAAAAGGCTTCCCATCGG+AGG | 0.574707 | 5.4:-75720037 | None:intergenic |
| AATGAGAACGAAAGTGTCCA+TGG | 0.576476 | 5.4:-75720946 | None:intergenic |
| GAATGTTGGTAAAGCTCAAG+AGG | 0.577411 | 5.4:+75721020 | MS.gene020842:CDS |
| GTGTACTCACCAATCACCTC+AGG | 0.577943 | 5.4:-75720799 | None:intergenic |
| ATGGTGGTGGAAGTGGAACT+GGG | 0.578626 | 5.4:+75721091 | MS.gene020842:CDS |
| AACTCTTCTCAAGCCTAACA+TGG | 0.582067 | 5.4:+75720452 | MS.gene020842:CDS |
| TTGGCAGCAGATGAGAGCAC+TGG | 0.583087 | 5.4:+75719868 | MS.gene020842:CDS |
| ACTCTAGGCAAATATGGTGG+TGG | 0.586057 | 5.4:+75721078 | MS.gene020842:CDS |
| GGTATTTCTGGCAAGATGCA+AGG | 0.586405 | 5.4:+75721041 | MS.gene020842:CDS |
| CAAGATACCCTTGCCAGGGG+TGG | 0.589488 | 5.4:-75719848 | None:intergenic |
| ACCAGGCATCAAAGTTGACA+AGG | 0.595336 | 5.4:+75720086 | MS.gene020842:CDS |
| CCTGACAGAAATACAATCCC+CGG | 0.595672 | 5.4:-75720859 | None:intergenic |
| CTTTACCAGAATTCCTCCGA+TGG | 0.596117 | 5.4:+75720024 | MS.gene020842:CDS |
| GGGATTGTATTTCTGTCAGG+TGG | 0.597741 | 5.4:+75720862 | MS.gene020842:CDS |
| GCCAATTCTGAAGCTACTCT+AGG | 0.598126 | 5.4:+75721063 | MS.gene020842:CDS |
| ACCTGCATACTTTCCAACAA+AGG | 0.607177 | 5.4:-75719415 | None:intergenic |
| TTTACCAGAATTCCTCCGAT+GGG | 0.613347 | 5.4:+75720025 | MS.gene020842:CDS |
| TGCTGGATAGACAACTCAGA+GGG | 0.616996 | 5.4:-75720249 | None:intergenic |
| GGTGAAGAGAAGTTCACGGA+GGG | 0.617088 | 5.4:-75719950 | None:intergenic |
| CCGGAGCACGGTTTGCCAAG+TGG | 0.620912 | 5.4:+75720196 | MS.gene020842:CDS |
| TTCAACAAAAGGCTTCCCAT+CGG | 0.623890 | 5.4:-75720040 | None:intergenic |
| TGCCAAGATACCCTTGCCAG+GGG | 0.625578 | 5.4:-75719851 | None:intergenic |
| GCTGGAAAGAAAGAGAATGT+TGG | 0.625630 | 5.4:+75721006 | MS.gene020842:CDS |
| TAGATGCCAGCAGTACTACA+AGG | 0.629007 | 5.4:+75720173 | MS.gene020842:CDS |
| ACGGTTTGCCAAGTGGCGTG+CGG | 0.639426 | 5.4:+75720203 | MS.gene020842:CDS |
| AATGGTGAAACAACAACCCA+AGG | 0.641211 | 5.4:+75720132 | MS.gene020842:CDS |
| AGTACTACAAGGCCGGAGCA+CGG | 0.644656 | 5.4:+75720184 | MS.gene020842:CDS |
| ACGCAGAACTGTCCCAGCCG+CGG | 0.649683 | 5.4:+75720834 | MS.gene020842:CDS |
| CAGGCTCAACAATAGGCACA+AGG | 0.650137 | 5.4:-75720320 | None:intergenic |
| AAATACAATCCCCGGTACCG+CGG | 0.654312 | 5.4:-75720851 | None:intergenic |
| TCTATCCAGCAAAACGCACA+GGG | 0.656184 | 5.4:+75720261 | MS.gene020842:CDS |
| GCAAAGCACACTCAAGACAT+GGG | 0.661511 | 5.4:+75720984 | MS.gene020842:CDS |
| TTGTGTGCAGGTATCACCTG+AGG | 0.664367 | 5.4:+75720783 | MS.gene020842:intron |
| TCCAGGTTCTGATAGCCCAA+AGG | 0.674535 | 5.4:+75720479 | MS.gene020842:CDS |
| TTCCTCAAAGAGGATGACAC+CGG | 0.677291 | 5.4:-75719998 | None:intergenic |
| CATCAACGTTGAGAACATTG+AGG | 0.688570 | 5.4:+75719915 | MS.gene020842:CDS |
| CAAAGAGGATGACACCGGAG+AGG | 0.703503 | 5.4:-75719993 | None:intergenic |
| CTAGCTTGTTCATTGCATCG+AGG | 0.707440 | 5.4:-75720912 | None:intergenic |
| GCTACTCTAGGCAAATATGG+TGG | 0.710878 | 5.4:+75721075 | MS.gene020842:CDS |
| CCAGGCATCAAAGTTGACAA+GGG | 0.714216 | 5.4:+75720087 | MS.gene020842:CDS |
| ACAACTCAGAGGGCTCATTG+GGG | 0.714515 | 5.4:-75720239 | None:intergenic |
| TTGCTGGATAGACAACTCAG+AGG | 0.728361 | 5.4:-75720250 | None:intergenic |
| AGGTGAAGAGAAGTTCACGG+AGG | 0.734150 | 5.4:-75719951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAAAGAAATACA+AGG | - | chr5.4:75719625-75719644 | None:intergenic | 10.0% |
| !! | TTAAAACATTTATTTAAGAA+CGG | - | chr5.4:75719523-75719542 | None:intergenic | 10.0% |
| !!! | ATTATATAAACTTGTTAATG+AGG | - | chr5.4:75719773-75719792 | None:intergenic | 15.0% |
| !! | ACAAAATGTAAGAAATTAAC+GGG | + | chr5.4:75720652-75720671 | MS.gene020842:intron | 20.0% |
| !! | GACAAAATGTAAGAAATTAA+CGG | + | chr5.4:75720651-75720670 | MS.gene020842:intron | 20.0% |
| !!! | AAAAATTGAGTTTTACCTTT+GGG | - | chr5.4:75720497-75720516 | None:intergenic | 20.0% |
| !!! | TAAAAATTGAGTTTTACCTT+TGG | - | chr5.4:75720498-75720517 | None:intergenic | 20.0% |
| !!! | TATTATCTTTATTTACTCGA+GGG | + | chr5.4:75720704-75720723 | MS.gene020842:intron | 20.0% |
| !!! | TTATTATCTTTATTTACTCG+AGG | + | chr5.4:75720703-75720722 | MS.gene020842:intron | 20.0% |
| ! | AACATTTATTTAAGAACGGA+TGG | - | chr5.4:75719519-75719538 | None:intergenic | 25.0% |
| ! | AGCTTATATCAAAAGAAGAA+AGG | - | chr5.4:75719453-75719472 | None:intergenic | 25.0% |
| ! | CTTATATCAAAAGAAGAAAG+GGG | - | chr5.4:75719451-75719470 | None:intergenic | 25.0% |
| ! | GCATAATAATAGGAATTAAC+CGG | - | chr5.4:75720628-75720647 | None:intergenic | 25.0% |
| ! | GCTTATATCAAAAGAAGAAA+GGG | - | chr5.4:75719452-75719471 | None:intergenic | 25.0% |
| ! | GTTTATATAATAGTTGACTG+TGG | + | chr5.4:75719782-75719801 | MS.gene020842:intron | 25.0% |
| ! | TAATTGTTCTTGTATGTGTT+TGG | - | chr5.4:75719494-75719513 | None:intergenic | 25.0% |
| ! | TTATATCAAAAGAAGAAAGG+GGG | - | chr5.4:75719450-75719469 | None:intergenic | 25.0% |
| !! | TTCTGAGAGTTTATATGTTA+AGG | + | chr5.4:75721119-75721138 | MS.gene020842:CDS | 25.0% |
| !! | TTTTGTCGATGCATAATAAT+AGG | - | chr5.4:75720638-75720657 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTCTTCATCATTC+CGG | + | chr5.4:75720606-75720625 | MS.gene020842:intron | 25.0% |
| ACATATCATGAACCATTTCT+AGG | - | chr5.4:75719726-75719745 | None:intergenic | 30.0% | |
| GTTAATGAGGATTGAAATTG+AGG | - | chr5.4:75719760-75719779 | None:intergenic | 30.0% | |
| TGAAACTAGTAACCTAGAAA+TGG | + | chr5.4:75719711-75719730 | MS.gene020842:intron | 30.0% | |
| !! | TATGCACTTCTTAATTTGTG+TGG | + | chr5.4:75719644-75719663 | MS.gene020842:intron | 30.0% |
| !! | TTCTTGTATGTGTTTGGTTT+TGG | - | chr5.4:75719488-75719507 | None:intergenic | 30.0% |
| AAAATCTCAGGCTCAACAAT+AGG | - | chr5.4:75720330-75720349 | None:intergenic | 35.0% | |
| GTTGAATTAGCTGGAACAAA+TGG | + | chr5.4:75720114-75720133 | MS.gene020842:CDS | 35.0% | |
| TCTTGGAGGATTTCAACAAA+AGG | - | chr5.4:75720054-75720073 | None:intergenic | 35.0% | |
| ! | CAATTTGCATTTTTGTGTGC+AGG | + | chr5.4:75720771-75720790 | MS.gene020842:intron | 35.0% |
| !! | TAAAGCTCAAGAGGTATTTC+TGG | + | chr5.4:75721029-75721048 | MS.gene020842:CDS | 35.0% |
| AACTCTTCTCAAGCCTAACA+TGG | + | chr5.4:75720452-75720471 | MS.gene020842:CDS | 40.0% | |
| AATGGTGAAACAACAACCCA+AGG | + | chr5.4:75720132-75720151 | MS.gene020842:CDS | 40.0% | |
| ACCTGCATACTTTCCAACAA+AGG | - | chr5.4:75719418-75719437 | None:intergenic | 40.0% | |
| ATCATTCAGTGCCTTGTAAC+AGG | - | chr5.4:75720412-75720431 | None:intergenic | 40.0% | |
| CAAGAGAACAATGTCATACC+AGG | + | chr5.4:75720069-75720088 | MS.gene020842:CDS | 40.0% | |
| CATCAACGTTGAGAACATTG+AGG | + | chr5.4:75719915-75719934 | MS.gene020842:CDS | 40.0% | |
| CTGGTATGACATTGTTCTCT+TGG | - | chr5.4:75720071-75720090 | None:intergenic | 40.0% | |
| GAAGCTACTCTAGGCAAATA+TGG | + | chr5.4:75721072-75721091 | MS.gene020842:CDS | 40.0% | |
| GCTGGAAAGAAAGAGAATGT+TGG | + | chr5.4:75721006-75721025 | MS.gene020842:CDS | 40.0% | |
| GGACACTTTCGTTCTCATTT+GGG | + | chr5.4:75720950-75720969 | MS.gene020842:CDS | 40.0% | |
| GGTAAAGAGTTTCCTCAAAG+AGG | - | chr5.4:75720011-75720030 | None:intergenic | 40.0% | |
| GTATGACATTGTTCTCTTGG+AGG | - | chr5.4:75720068-75720087 | None:intergenic | 40.0% | |
| GTGTAAGCTAGTGACAAGAT+TGG | - | chr5.4:75720536-75720555 | None:intergenic | 40.0% | |
| TCCAAGAGAGTCAAAACCTT+GGG | - | chr5.4:75720151-75720170 | None:intergenic | 40.0% | |
| TGAGAAGAGTTCCTTCAAGA+AGG | - | chr5.4:75720443-75720462 | None:intergenic | 40.0% | |
| TGGACACTTTCGTTCTCATT+TGG | + | chr5.4:75720949-75720968 | MS.gene020842:CDS | 40.0% | |
| TTCAACAAAAGGCTTCCCAT+CGG | - | chr5.4:75720043-75720062 | None:intergenic | 40.0% | |
| TTTACCAGAATTCCTCCGAT+GGG | + | chr5.4:75720025-75720044 | MS.gene020842:CDS | 40.0% | |
| ! | ACCTAGTGCGAGAGTTATTT+TGG | + | chr5.4:75719672-75719691 | MS.gene020842:intron | 40.0% |
| ! | GAATGTTGGTAAAGCTCAAG+AGG | + | chr5.4:75721020-75721039 | MS.gene020842:CDS | 40.0% |
| ! | GATCCATCGGTTAAAATCTC+AGG | - | chr5.4:75720342-75720361 | None:intergenic | 40.0% |
| !! | AAGGGTGTTGTTGAATTAGC+TGG | + | chr5.4:75720105-75720124 | MS.gene020842:CDS | 40.0% |
| !! | AATGAGAACGAAAGTGTCCA+TGG | - | chr5.4:75720949-75720968 | None:intergenic | 40.0% |
| !! | CCTAGTGCGAGAGTTATTTT+GGG | + | chr5.4:75719673-75719692 | MS.gene020842:intron | 40.0% |
| !!! | GAGAGTTATTTTGGGACAGA+GGG | + | chr5.4:75719681-75719700 | MS.gene020842:intron | 40.0% |
| AAGCCTAACATGGTTACTCC+AGG | + | chr5.4:75720462-75720481 | MS.gene020842:CDS | 45.0% | |
| AATGCACTCCAATACCTCTC+CGG | + | chr5.4:75719979-75719998 | MS.gene020842:CDS | 45.0% | |
| ACCAGGCATCAAAGTTGACA+AGG | + | chr5.4:75720086-75720105 | MS.gene020842:CDS | 45.0% | |
| ACTCTAGGCAAATATGGTGG+TGG | + | chr5.4:75721078-75721097 | MS.gene020842:CDS | 45.0% | |
| AGCAAAGCACACTCAAGACA+TGG | + | chr5.4:75720983-75721002 | MS.gene020842:CDS | 45.0% | |
| AGCTAGATGTTGTGAAGCCA+TGG | + | chr5.4:75720929-75720948 | MS.gene020842:CDS | 45.0% | |
| CCAGGCATCAAAGTTGACAA+GGG | + | chr5.4:75720087-75720106 | MS.gene020842:CDS | 45.0% | |
| CCCAAAATAACTCTCGCACT+AGG | - | chr5.4:75719676-75719695 | None:intergenic | 45.0% | |
| CCTGACAGAAATACAATCCC+CGG | - | chr5.4:75720862-75720881 | None:intergenic | 45.0% | |
| CTCCAAGAGAGTCAAAACCT+TGG | - | chr5.4:75720152-75720171 | None:intergenic | 45.0% | |
| CTTTACCAGAATTCCTCCGA+TGG | + | chr5.4:75720024-75720043 | MS.gene020842:CDS | 45.0% | |
| GAACCTGGAGTAACCATGTT+AGG | - | chr5.4:75720468-75720487 | None:intergenic | 45.0% | |
| GAGAGGTGAAGAGAAGTTCA+CGG | - | chr5.4:75719957-75719976 | None:intergenic | 45.0% | |
| GATCAGCATGTCCTTCTTGA+AGG | + | chr5.4:75720429-75720448 | MS.gene020842:CDS | 45.0% | |
| GCAAAGCACACTCAAGACAT+GGG | + | chr5.4:75720984-75721003 | MS.gene020842:CDS | 45.0% | |
| GCCTAGAGTAGCTTCAGAAT+TGG | - | chr5.4:75721067-75721086 | None:intergenic | 45.0% | |
| GCTACTCTAGGCAAATATGG+TGG | + | chr5.4:75721075-75721094 | MS.gene020842:CDS | 45.0% | |
| TAGATGCCAGCAGTACTACA+AGG | + | chr5.4:75720173-75720192 | MS.gene020842:CDS | 45.0% | |
| TCTATCCAGCAAAACGCACA+GGG | + | chr5.4:75720261-75720280 | MS.gene020842:CDS | 45.0% | |
| TGCTGGATAGACAACTCAGA+GGG | - | chr5.4:75720252-75720271 | None:intergenic | 45.0% | |
| TTCCTCAAAGAGGATGACAC+CGG | - | chr5.4:75720001-75720020 | None:intergenic | 45.0% | |
| TTGCTGGATAGACAACTCAG+AGG | - | chr5.4:75720253-75720272 | None:intergenic | 45.0% | |
| ! | GCCTTTGTTGGAAAGTATGC+AGG | + | chr5.4:75719414-75719433 | MS.gene020842:CDS | 45.0% |
| ! | GGGATTGTATTTCTGTCAGG+TGG | + | chr5.4:75720862-75720881 | MS.gene020842:CDS | 45.0% |
| !! | CTAGCTTGTTCATTGCATCG+AGG | - | chr5.4:75720915-75720934 | None:intergenic | 45.0% |
| !! | GAGAGGTATTGGAGTGCATT+GGG | - | chr5.4:75719979-75719998 | None:intergenic | 45.0% |
| !! | GAGCCTGAGATTTTAACCGA+TGG | + | chr5.4:75720336-75720355 | MS.gene020842:CDS | 45.0% |
| !! | GCCAATTCTGAAGCTACTCT+AGG | + | chr5.4:75721063-75721082 | MS.gene020842:CDS | 45.0% |
| !! | GGTATTTCTGGCAAGATGCA+AGG | + | chr5.4:75721041-75721060 | MS.gene020842:CDS | 45.0% |
| !!! | ACCCAAGGTTTTGACTCTCT+TGG | + | chr5.4:75720147-75720166 | MS.gene020842:CDS | 45.0% |
| !!! | CGAGAGTTATTTTGGGACAG+AGG | + | chr5.4:75719680-75719699 | MS.gene020842:intron | 45.0% |
| AAATACAATCCCCGGTACCG+CGG | - | chr5.4:75720854-75720873 | None:intergenic | 50.0% | |
| AACAAAAGGCTTCCCATCGG+AGG | - | chr5.4:75720040-75720059 | None:intergenic | 50.0% | |
| ACAACTCAGAGGGCTCATTG+GGG | - | chr5.4:75720242-75720261 | None:intergenic | 50.0% | |
| ACCTTTGGGCTATCAGAACC+TGG | - | chr5.4:75720483-75720502 | None:intergenic | 50.0% | |
| AGACAACTCAGAGGGCTCAT+TGG | - | chr5.4:75720244-75720263 | None:intergenic | 50.0% | |
| AGGTGAAGAGAAGTTCACGG+AGG | - | chr5.4:75719954-75719973 | None:intergenic | 50.0% | |
| AGGTGGACAAAGTGAAGAGC+AGG | + | chr5.4:75720879-75720898 | MS.gene020842:CDS | 50.0% | |
| CAGGCTCAACAATAGGCACA+AGG | - | chr5.4:75720323-75720342 | None:intergenic | 50.0% | |
| CAGGTATCACCTGAGGTGAT+TGG | + | chr5.4:75720790-75720809 | MS.gene020842:intron | 50.0% | |
| CCCTTGTCAACTTTGATGCC+TGG | - | chr5.4:75720090-75720109 | None:intergenic | 50.0% | |
| GACAACTCAGAGGGCTCATT+GGG | - | chr5.4:75720243-75720262 | None:intergenic | 50.0% | |
| GCCATCATTTGCCAGGAGAA+TGG | + | chr5.4:75720297-75720316 | MS.gene020842:CDS | 50.0% | |
| GCCATTCTCCTGGCAAATGA+TGG | - | chr5.4:75720301-75720320 | None:intergenic | 50.0% | |
| GGCGATGTCATGAGATCCAT+CGG | - | chr5.4:75720355-75720374 | None:intergenic | 50.0% | |
| GGTGAAGAGAAGTTCACGGA+GGG | - | chr5.4:75719953-75719972 | None:intergenic | 50.0% | |
| GTATTGGAGTGCATTGGGAG+AGG | - | chr5.4:75719974-75719993 | None:intergenic | 50.0% | |
| GTCTATCCAGCAAAACGCAC+AGG | + | chr5.4:75720260-75720279 | MS.gene020842:CDS | 50.0% | |
| GTGTACTCACCAATCACCTC+AGG | - | chr5.4:75720802-75720821 | None:intergenic | 50.0% | |
| TCGAGGGACAAAGTCAGAGA+GGG | + | chr5.4:75720720-75720739 | MS.gene020842:intron | 50.0% | |
| TGTGCTTGCAGCCTGTTACA+AGG | + | chr5.4:75720398-75720417 | MS.gene020842:CDS | 50.0% | |
| TTCAGTGACAGCAGCGCATT+TGG | - | chr5.4:75720376-75720395 | None:intergenic | 50.0% | |
| TTGTGTGCAGGTATCACCTG+AGG | + | chr5.4:75720783-75720802 | MS.gene020842:intron | 50.0% | |
| ! | CCGGGGATTGTATTTCTGTC+AGG | + | chr5.4:75720859-75720878 | MS.gene020842:CDS | 50.0% |
| ! | TCCAGGTTCTGATAGCCCAA+AGG | + | chr5.4:75720479-75720498 | MS.gene020842:CDS | 50.0% |
| !! | ATGGTGGTGGAAGTGGAACT+GGG | + | chr5.4:75721091-75721110 | MS.gene020842:CDS | 50.0% |
| !! | GATGAGAGCACTGGAACCAT+TGG | + | chr5.4:75719877-75719896 | MS.gene020842:CDS | 50.0% |
| !! | GGAGAGGTATTGGAGTGCAT+TGG | - | chr5.4:75719980-75719999 | None:intergenic | 50.0% |
| !! | GGCAAATATGGTGGTGGAAG+TGG | + | chr5.4:75721084-75721103 | MS.gene020842:CDS | 50.0% |
| !! | TATGGTGGTGGAAGTGGAAC+TGG | + | chr5.4:75721090-75721109 | MS.gene020842:CDS | 50.0% |
| AGCACACTCAAGACATGGGC+TGG | + | chr5.4:75720988-75721007 | MS.gene020842:CDS | 55.0% | |
| AGTACTACAAGGCCGGAGCA+CGG | + | chr5.4:75720184-75720203 | MS.gene020842:CDS | 55.0% | |
| CAAAGAGGATGACACCGGAG+AGG | - | chr5.4:75719996-75720015 | None:intergenic | 55.0% | |
| CTCGAGGGACAAAGTCAGAG+AGG | + | chr5.4:75720719-75720738 | MS.gene020842:intron | 55.0% | |
| CTGCCAAGATACCCTTGCCA+GGG | - | chr5.4:75719855-75719874 | None:intergenic | 55.0% | |
| GAAGTTCACGGAGGGCTTGA+CGG | - | chr5.4:75719945-75719964 | None:intergenic | 55.0% | |
| GCTTCCCATCGGAGGAATTC+TGG | - | chr5.4:75720032-75720051 | None:intergenic | 55.0% | |
| TACATAGCCACCCCTGGCAA+GGG | + | chr5.4:75719841-75719860 | MS.gene020842:CDS | 55.0% | |
| TAGGCACAAGGCCATTCTCC+TGG | - | chr5.4:75720311-75720330 | None:intergenic | 55.0% | |
| TCGCTACGCCATCATTTGCC+AGG | + | chr5.4:75720290-75720309 | MS.gene020842:CDS | 55.0% | |
| TGCCAAGATACCCTTGCCAG+GGG | - | chr5.4:75719854-75719873 | None:intergenic | 55.0% | |
| TGCCAGCAGTACTACAAGGC+CGG | + | chr5.4:75720177-75720196 | MS.gene020842:CDS | 55.0% | |
| TGGCGTGCGGTACTCAAGAT+TGG | + | chr5.4:75720216-75720235 | MS.gene020842:CDS | 55.0% | |
| TGGTGGAAGTGGAACTGGGT+TGG | + | chr5.4:75721095-75721114 | MS.gene020842:CDS | 55.0% | |
| ! | GCTTGCTAGACGCTTGCCAA+TGG | - | chr5.4:75719896-75719915 | None:intergenic | 55.0% |
| ! | GGATGACACCGGAGAGGTAT+TGG | - | chr5.4:75719990-75720009 | None:intergenic | 55.0% |
| ! | TTGGCAGCAGATGAGAGCAC+TGG | + | chr5.4:75719868-75719887 | MS.gene020842:CDS | 55.0% |
| !! | CTCCGGTGTCATCCTCTTTG+AGG | + | chr5.4:75719996-75720015 | MS.gene020842:CDS | 55.0% |
| ACGGTTTGCCAAGTGGCGTG+CGG | + | chr5.4:75720203-75720222 | MS.gene020842:CDS | 60.0% | |
| CAAGATACCCTTGCCAGGGG+TGG | - | chr5.4:75719851-75719870 | None:intergenic | 60.0% | |
| CCACTTGGCAAACCGTGCTC+CGG | - | chr5.4:75720199-75720218 | None:intergenic | 60.0% | |
| CCAGCAAAACGCACAGGGCT+TGG | + | chr5.4:75720266-75720285 | MS.gene020842:CDS | 60.0% | |
| GCCAAGTACATAGCCACCCC+TGG | + | chr5.4:75719835-75719854 | MS.gene020842:CDS | 60.0% | |
| GCCAGGGGTGGCTATGTACT+TGG | - | chr5.4:75719839-75719858 | None:intergenic | 60.0% | |
| GCTGCCAAGATACCCTTGCC+AGG | - | chr5.4:75719856-75719875 | None:intergenic | 60.0% | |
| GTACATAGCCACCCCTGGCA+AGG | + | chr5.4:75719840-75719859 | MS.gene020842:CDS | 60.0% | |
| TTCACGGAGGGCTTGACGGT+TGG | - | chr5.4:75719941-75719960 | None:intergenic | 60.0% | |
| ! | CCAAGCCCTGTGCGTTTTGC+TGG | - | chr5.4:75720269-75720288 | None:intergenic | 60.0% |
| ! | CTCCGGCCTTGTAGTACTGC+TGG | - | chr5.4:75720182-75720201 | None:intergenic | 60.0% |
| ! | CTTGAGTACCGCACGCCACT+TGG | - | chr5.4:75720214-75720233 | None:intergenic | 60.0% |
| !! | CACCCCTGGCAAGGGTATCT+TGG | + | chr5.4:75719849-75719868 | MS.gene020842:CDS | 60.0% |
| AACTGTCCCAGCCGCGGTAC+CGG | + | chr5.4:75720840-75720859 | MS.gene020842:CDS | 65.0% | |
| ACGCAGAACTGTCCCAGCCG+CGG | + | chr5.4:75720834-75720853 | MS.gene020842:CDS | 65.0% | |
| CCGGAGCACGGTTTGCCAAG+TGG | + | chr5.4:75720196-75720215 | MS.gene020842:CDS | 65.0% | |
| ACAATCCCCGGTACCGCGGC+TGG | - | chr5.4:75720850-75720869 | None:intergenic | 70.0% | |
| ACTGTCCCAGCCGCGGTACC+GGG | + | chr5.4:75720841-75720860 | MS.gene020842:CDS | 70.0% | |
| CAATCCCCGGTACCGCGGCT+GGG | - | chr5.4:75720849-75720868 | None:intergenic | 70.0% | |
| CTGTCCCAGCCGCGGTACCG+GGG | + | chr5.4:75720842-75720861 | MS.gene020842:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 75719408 | 75721155 | 75719408 | ID=MS.gene020842 |
| chr5.4 | mRNA | 75719408 | 75721155 | 75719408 | ID=MS.gene020842.t1;Parent=MS.gene020842 |
| chr5.4 | exon | 75719408 | 75719435 | 75719408 | ID=MS.gene020842.t1.exon1;Parent=MS.gene020842.t1 |
| chr5.4 | CDS | 75719408 | 75719435 | 75719408 | ID=cds.MS.gene020842.t1;Parent=MS.gene020842.t1 |
| chr5.4 | exon | 75719818 | 75720500 | 75719818 | ID=MS.gene020842.t1.exon2;Parent=MS.gene020842.t1 |
| chr5.4 | CDS | 75719818 | 75720500 | 75719818 | ID=cds.MS.gene020842.t1;Parent=MS.gene020842.t1 |
| chr5.4 | exon | 75720793 | 75721155 | 75720793 | ID=MS.gene020842.t1.exon3;Parent=MS.gene020842.t1 |
| chr5.4 | CDS | 75720793 | 75721155 | 75720793 | ID=cds.MS.gene020842.t1;Parent=MS.gene020842.t1 |
| Gene Sequence |
| Protein sequence |
