Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020952.t1 | XP_003618033.1 | 98.1 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 5.00E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020952.t1 | Q9S7M9 | 75.7 | 202 | 49 | 0 | 12 | 213 | 7 | 208 | 1.4e-86 | 320.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020952.t1 | G7K0K7 | 98.1 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 3.6e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68324 | MS.gene020952 | PPI |
| MS.gene020952 | MS.gene027563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020952.t1 | MTR_5g098250 | 98.122 | 213 | 4 | 0 | 1 | 213 | 2 | 214 | 1.91e-158 | 436 |
| MS.gene020952.t1 | MTR_5g098250 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.97e-158 | 436 |
| MS.gene020952.t1 | MTR_3g060210 | 71.287 | 202 | 53 | 2 | 13 | 209 | 8 | 209 | 3.73e-104 | 299 |
| MS.gene020952.t1 | MTR_1g102720 | 34.742 | 213 | 139 | 0 | 1 | 213 | 1 | 213 | 1.49e-40 | 137 |
| MS.gene020952.t1 | MTR_7g095690 | 35.437 | 206 | 131 | 1 | 8 | 213 | 8 | 211 | 2.20e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020952.t1 | AT3G07680 | 75.369 | 203 | 50 | 0 | 11 | 213 | 6 | 208 | 3.76e-116 | 329 |
| MS.gene020952.t1 | AT3G22845 | 37.850 | 214 | 131 | 1 | 2 | 213 | 1 | 214 | 7.81e-45 | 149 |
| MS.gene020952.t1 | AT3G22845 | 39.416 | 137 | 81 | 1 | 2 | 136 | 1 | 137 | 6.61e-25 | 96.7 |
Find 37 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATTCTCCTTGGCATTA+TGG | 0.233913 | 5.4:+77716189 | MS.gene020952:CDS |
| GCTAGAGCAGATAGCAAAAT+TGG | 0.242383 | 5.4:+77717842 | MS.gene020952:CDS |
| AGAAGAGGCATTACCGTCTT+TGG | 0.277250 | 5.4:-77717682 | None:intergenic |
| CGCTTGTTTGAGCGAAAGTT+GGG | 0.369721 | 5.4:+77719058 | MS.gene020952:CDS |
| ATGTGACAATTTCAGGTAAA+GGG | 0.389800 | 5.4:+77717489 | MS.gene020952:intron |
| TTTGAATCAGCAGCACTGAT+TGG | 0.396380 | 5.4:+77719004 | MS.gene020952:CDS |
| GAGACATAGTTGTTGTGTTA+TGG | 0.415360 | 5.4:+77716029 | MS.gene020952:CDS |
| CAAACCGACCGCCAAGCAAT+AGG | 0.422507 | 5.4:+77717912 | MS.gene020952:CDS |
| TTCAAATAATACCTATTGCT+TGG | 0.424603 | 5.4:-77717923 | None:intergenic |
| GTGCTTTGTGTACTGCTCTT+CGG | 0.425187 | 5.4:-77718979 | None:intergenic |
| TTATTAAGGCTGATTCTCCT+TGG | 0.450821 | 5.4:+77716181 | MS.gene020952:CDS |
| ACGCTTGTTTGAGCGAAAGT+TGG | 0.460724 | 5.4:+77719057 | MS.gene020952:CDS |
| TTGCTATCTGCTCTAGCAAA+GGG | 0.461945 | 5.4:-77717836 | None:intergenic |
| AAATCGATGGTCTCATGATA+AGG | 0.471604 | 5.4:-77717618 | None:intergenic |
| AAACAGAACTTATGAACTCC+TGG | 0.500426 | 5.4:-77717582 | None:intergenic |
| CCTTGGCATTATGGTGATGA+AGG | 0.507688 | 5.4:+77716198 | MS.gene020952:CDS |
| GTACGGAATGCAGTGAATGA+TGG | 0.525912 | 5.4:+77718950 | MS.gene020952:intron |
| AAATAATACCTATTGCTTGG+CGG | 0.527484 | 5.4:-77717920 | None:intergenic |
| ATATTCAGTTTGAACAACAT+TGG | 0.531911 | 5.4:+77717880 | MS.gene020952:CDS |
| GAATTTGTTGCTCACAAACC+AGG | 0.531992 | 5.4:+77717564 | MS.gene020952:CDS |
| TTTCAGGTAAAGGGGCCGGC+TGG | 0.544677 | 5.4:+77717498 | MS.gene020952:intron |
| ACAATTTCAGGTAAAGGGGC+CGG | 0.552733 | 5.4:+77717494 | MS.gene020952:intron |
| TCTTGAATTTGTTCACCAGC+CGG | 0.553254 | 5.4:-77717513 | None:intergenic |
| CTCATGATAAGGAGATTTGT+TGG | 0.556826 | 5.4:-77717607 | None:intergenic |
| TGTTGTTGAAAGAAACAGAA+GGG | 0.572521 | 5.4:+77716076 | MS.gene020952:CDS |
| TTTGCTATCTGCTCTAGCAA+AGG | 0.575851 | 5.4:-77717837 | None:intergenic |
| TACGGAATGCAGTGAATGAT+GGG | 0.591025 | 5.4:+77718951 | MS.gene020952:intron |
| AATACCTATTGCTTGGCGGT+CGG | 0.591113 | 5.4:-77717916 | None:intergenic |
| GTCCTAACTCTAAACTCTAG+AGG | 0.612983 | 5.4:-77719083 | None:intergenic |
| AACATGCACATCAAAATCGA+TGG | 0.617109 | 5.4:-77717631 | None:intergenic |
| TTTGAGCAACATGCCAAAGA+CGG | 0.617409 | 5.4:+77717669 | MS.gene020952:CDS |
| TCACATGATGTGAAGTATGA+AGG | 0.618409 | 5.4:+77716132 | MS.gene020952:CDS |
| GTTGCTCAAAGTAAGAGAAG+TGG | 0.632289 | 5.4:-77717656 | None:intergenic |
| TGTGACAATTTCAGGTAAAG+GGG | 0.645937 | 5.4:+77717490 | MS.gene020952:intron |
| TGATGAAGGTGTAGATCTTG+TGG | 0.649735 | 5.4:+77716212 | MS.gene020952:CDS |
| TTGTTGTTGAAAGAAACAGA+AGG | 0.660308 | 5.4:+77716075 | MS.gene020952:CDS |
| CCTTCATCACCATAATGCCA+AGG | 0.663178 | 5.4:-77716198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGTGACAATAATAT+TGG | - | chr5.4:77718069-77718088 | None:intergenic | 15.0% |
| !! | AATATAAATGATACACATTT+CGG | + | chr5.4:77717312-77717331 | MS.gene020952:intron | 15.0% |
| !! | AGTAAAATAAGAACAAAACT+TGG | - | chr5.4:77718192-77718211 | None:intergenic | 20.0% |
| !! | CATCATATCATATGAAATTA+AGG | - | chr5.4:77716289-77716308 | None:intergenic | 20.0% |
| !! | CTTTGTATCATATGAATATA+GGG | - | chr5.4:77716570-77716589 | None:intergenic | 20.0% |
| !! | TCAATTTGTATATAGTGATT+TGG | + | chr5.4:77717711-77717730 | MS.gene020952:intron | 20.0% |
| !!! | ACAAATTGATTTAATAGAAG+AGG | - | chr5.4:77717700-77717719 | None:intergenic | 20.0% |
| !!! | AGTTTTGTCCAAATAATAAT+TGG | - | chr5.4:77718008-77718027 | None:intergenic | 20.0% |
| !!! | GTTATTTCTTTCTAGATATT+GGG | + | chr5.4:77716637-77716656 | MS.gene020952:intron | 20.0% |
| !!! | TAAATATCGTGTTTTTTGTA+CGG | + | chr5.4:77718933-77718952 | MS.gene020952:intron | 20.0% |
| !!! | TCTAATTTTTAAGGCAATAA+GGG | - | chr5.4:77717292-77717311 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTTTCTAGATAT+TGG | + | chr5.4:77716636-77716655 | MS.gene020952:intron | 20.0% |
| !!! | TGTTTCTTTTGTTGTTATTA+AGG | + | chr5.4:77716167-77716186 | MS.gene020952:CDS | 20.0% |
| !!! | TTCTAATTTTTAAGGCAATA+AGG | - | chr5.4:77717293-77717312 | None:intergenic | 20.0% |
| !!! | TTTAGTTTATATATGACATC+TGG | + | chr5.4:77718237-77718256 | MS.gene020952:intron | 20.0% |
| ! | AAAAATCATCTCTTTGTCAA+AGG | + | chr5.4:77718130-77718149 | MS.gene020952:intron | 25.0% |
| ! | AAAGGATGCAAGTAAATATA+TGG | - | chr5.4:77718818-77718837 | None:intergenic | 25.0% |
| ! | AGAAACTATTAGGAAAGATT+TGG | + | chr5.4:77718567-77718586 | MS.gene020952:intron | 25.0% |
| ! | AGATTTGGAAATTTATGAGT+TGG | + | chr5.4:77718582-77718601 | MS.gene020952:intron | 25.0% |
| ! | ATATTCAGTTTGAACAACAT+TGG | + | chr5.4:77717880-77717899 | MS.gene020952:CDS | 25.0% |
| ! | CAACATAATCAGAGATATTA+CGG | - | chr5.4:77717451-77717470 | None:intergenic | 25.0% |
| ! | CATGTTTCGATATATCTAAA+TGG | - | chr5.4:77718795-77718814 | None:intergenic | 25.0% |
| ! | GATAGATATGTGAATTTGTA+TGG | - | chr5.4:77717398-77717417 | None:intergenic | 25.0% |
| ! | GCTTTGTATCATATGAATAT+AGG | - | chr5.4:77716571-77716590 | None:intergenic | 25.0% |
| ! | TATCTAGAAAGAAATAACAG+TGG | - | chr5.4:77716635-77716654 | None:intergenic | 25.0% |
| ! | TCCACAAACCAATTATTATT+TGG | + | chr5.4:77717997-77718016 | MS.gene020952:intron | 25.0% |
| ! | TTCAAATAATACCTATTGCT+TGG | - | chr5.4:77717926-77717945 | None:intergenic | 25.0% |
| ! | TTCTATCATACACCATATTT+CGG | - | chr5.4:77718609-77718628 | None:intergenic | 25.0% |
| !! | AGAGTTTTTATAGGGTTAAT+CGG | - | chr5.4:77716521-77716540 | None:intergenic | 25.0% |
| !! | CGATGTATAGAGTTTTTATA+GGG | - | chr5.4:77716529-77716548 | None:intergenic | 25.0% |
| !! | TCGATGTATAGAGTTTTTAT+AGG | - | chr5.4:77716530-77716549 | None:intergenic | 25.0% |
| !!! | CTTATTATTTCTAGAACAAG+TGG | - | chr5.4:77717420-77717439 | None:intergenic | 25.0% |
| !!! | TCCAAATAATAATTGGTTTG+TGG | - | chr5.4:77718001-77718020 | None:intergenic | 25.0% |
| !!! | TGTCACAAATTTTTTTGAGT+AGG | + | chr5.4:77718076-77718095 | MS.gene020952:intron | 25.0% |
| !!! | TTATGGTGATTGTTTTGATT+GGG | + | chr5.4:77716046-77716065 | MS.gene020952:CDS | 25.0% |
| AAACCATCTGAGAAACTATT+AGG | + | chr5.4:77718557-77718576 | MS.gene020952:intron | 30.0% | |
| AAACTTACGAACAGTTTCAT+AGG | + | chr5.4:77718023-77718042 | MS.gene020952:intron | 30.0% | |
| AAATAATACCTATTGCTTGG+CGG | - | chr5.4:77717923-77717942 | None:intergenic | 30.0% | |
| AGATGGACAATAATTAAGGT+CGG | + | chr5.4:77717002-77717021 | MS.gene020952:intron | 30.0% | |
| AGATGTGATAAGATTTAGAG+AGG | + | chr5.4:77718457-77718476 | MS.gene020952:intron | 30.0% | |
| AGTTAAGAGCAATATTTGCT+GGG | - | chr5.4:77716875-77716894 | None:intergenic | 30.0% | |
| CAGTCAACTTTGATCATAAT+TGG | - | chr5.4:77716366-77716385 | None:intergenic | 30.0% | |
| CATTTAATCATGAGATGAGA+GGG | - | chr5.4:77718766-77718785 | None:intergenic | 30.0% | |
| CGTAATATCTCTGATTATGT+TGG | + | chr5.4:77717449-77717468 | MS.gene020952:intron | 30.0% | |
| CGTTATTTAATCCATGTAGT+GGG | + | chr5.4:77718637-77718656 | MS.gene020952:intron | 30.0% | |
| CTTAATTATTGTCCATCTGA+GGG | - | chr5.4:77717000-77717019 | None:intergenic | 30.0% | |
| GTAGTCAAAATTTGAGTCAT+TGG | - | chr5.4:77718737-77718756 | None:intergenic | 30.0% | |
| TGACTGTTATGACTGATTAA+CGG | + | chr5.4:77716380-77716399 | MS.gene020952:intron | 30.0% | |
| TGAGAATAAAATAAGCGTAG+TGG | + | chr5.4:77718399-77718418 | MS.gene020952:intron | 30.0% | |
| TGGCAAACATTCATTATTGT+TGG | - | chr5.4:77716599-77716618 | None:intergenic | 30.0% | |
| TGTTGTTGAAAGAAACAGAA+GGG | + | chr5.4:77716076-77716095 | MS.gene020952:CDS | 30.0% | |
| TTTCCTAATAGTTTCTCAGA+TGG | - | chr5.4:77718563-77718582 | None:intergenic | 30.0% | |
| ! | AAGCTAAGTCATCCTTTTAT+AGG | + | chr5.4:77716774-77716793 | MS.gene020952:intron | 30.0% |
| ! | AGCTAAGTCATCCTTTTATA+GGG | + | chr5.4:77716775-77716794 | MS.gene020952:intron | 30.0% |
| ! | ATGTGACAATTTCAGGTAAA+GGG | + | chr5.4:77717489-77717508 | MS.gene020952:intron | 30.0% |
| ! | CGGTATTTTTCTGTGTATTA+GGG | + | chr5.4:77717332-77717351 | MS.gene020952:intron | 30.0% |
| ! | TCGGTATTTTTCTGTGTATT+AGG | + | chr5.4:77717331-77717350 | MS.gene020952:intron | 30.0% |
| ! | TTGTTGTTGAAAGAAACAGA+AGG | + | chr5.4:77716075-77716094 | MS.gene020952:CDS | 30.0% |
| !!! | GTTATGGTGATTGTTTTGAT+TGG | + | chr5.4:77716045-77716064 | MS.gene020952:CDS | 30.0% |
| AAAAGGATGACTTAGCTTCT+AGG | - | chr5.4:77716772-77716791 | None:intergenic | 35.0% | |
| AAACAGAACTTATGAACTCC+TGG | - | chr5.4:77717585-77717604 | None:intergenic | 35.0% | |
| AAAGGATGACTTAGCTTCTA+GGG | - | chr5.4:77716771-77716790 | None:intergenic | 35.0% | |
| AAATAACAGTGGCATGGTTA+TGG | - | chr5.4:77716624-77716643 | None:intergenic | 35.0% | |
| AAATCGATGGTCTCATGATA+AGG | - | chr5.4:77717621-77717640 | None:intergenic | 35.0% | |
| AACATGCACATCAAAATCGA+TGG | - | chr5.4:77717634-77717653 | None:intergenic | 35.0% | |
| AAGTTGTCATAGCTCATGTT+CGG | - | chr5.4:77717190-77717209 | None:intergenic | 35.0% | |
| ACAGTTCATTCATCTAGGAA+AGG | - | chr5.4:77718836-77718855 | None:intergenic | 35.0% | |
| AGAAAGAAATAACAGTGGCA+TGG | - | chr5.4:77716630-77716649 | None:intergenic | 35.0% | |
| AGTCAAATTACTAGAGGCAA+AGG | + | chr5.4:77718523-77718542 | MS.gene020952:intron | 35.0% | |
| ATGGTTAGGAGATAACTTGA+TGG | + | chr5.4:77717244-77717263 | MS.gene020952:intron | 35.0% | |
| CAGCAAATATTGCTCTTAAC+TGG | + | chr5.4:77716874-77716893 | MS.gene020952:intron | 35.0% | |
| CAGTTAAGAGCAATATTTGC+TGG | - | chr5.4:77716876-77716895 | None:intergenic | 35.0% | |
| CCTCAGATGGACAATAATTA+AGG | + | chr5.4:77716998-77717017 | MS.gene020952:intron | 35.0% | |
| CCTTAATTATTGTCCATCTG+AGG | - | chr5.4:77717001-77717020 | None:intergenic | 35.0% | |
| CTCATGATAAGGAGATTTGT+TGG | - | chr5.4:77717610-77717629 | None:intergenic | 35.0% | |
| CTTTACCTGAAATTGTCACA+TGG | - | chr5.4:77717490-77717509 | None:intergenic | 35.0% | |
| GACATCTAGATTCTGTAGTA+GGG | + | chr5.4:77718479-77718498 | MS.gene020952:intron | 35.0% | |
| GAGACATAGTTGTTGTGTTA+TGG | + | chr5.4:77716029-77716048 | MS.gene020952:CDS | 35.0% | |
| GAGGATAGTCAAATTACTAG+AGG | + | chr5.4:77718517-77718536 | MS.gene020952:intron | 35.0% | |
| GCATTTAATCATGAGATGAG+AGG | - | chr5.4:77718767-77718786 | None:intergenic | 35.0% | |
| GCGTTATTTAATCCATGTAG+TGG | + | chr5.4:77718636-77718655 | MS.gene020952:intron | 35.0% | |
| GGACAGGAAATTCTACTAAA+TGG | - | chr5.4:77718280-77718299 | None:intergenic | 35.0% | |
| GTGGTTTATGGTATAAGTGT+GGG | + | chr5.4:77716929-77716948 | MS.gene020952:intron | 35.0% | |
| TAAAGTCACACACATAGGAT+TGG | - | chr5.4:77716439-77716458 | None:intergenic | 35.0% | |
| TCACATGATGTGAAGTATGA+AGG | + | chr5.4:77716132-77716151 | MS.gene020952:CDS | 35.0% | |
| TGACTGATTAACGGTGTAAA+AGG | + | chr5.4:77716389-77716408 | MS.gene020952:intron | 35.0% | |
| TGGTGTATGATAGAACACTA+TGG | + | chr5.4:77718614-77718633 | MS.gene020952:intron | 35.0% | |
| TTTCCTAGATGAATGAACTG+TGG | + | chr5.4:77718835-77718854 | MS.gene020952:intron | 35.0% | |
| ! | AATGATTGGGTGTTGTAAGT+AGG | + | chr5.4:77716898-77716917 | MS.gene020952:intron | 35.0% |
| ! | ATGATTGGGTGTTGTAAGTA+GGG | + | chr5.4:77716899-77716918 | MS.gene020952:intron | 35.0% |
| ! | CATGTGACAATTTCAGGTAA+AGG | + | chr5.4:77717488-77717507 | MS.gene020952:intron | 35.0% |
| ! | TAGGGTTTTCAAAGGCTTTT+GGG | + | chr5.4:77716806-77716825 | MS.gene020952:intron | 35.0% |
| ! | TGTGACAATTTCAGGTAAAG+GGG | + | chr5.4:77717490-77717509 | MS.gene020952:intron | 35.0% |
| ! | TTAATCCATGTAGTGGGAAA+AGG | + | chr5.4:77718643-77718662 | MS.gene020952:intron | 35.0% |
| ! | TTATGAGTTGGACCGAAATA+TGG | + | chr5.4:77718594-77718613 | MS.gene020952:intron | 35.0% |
| ! | TTATTAAGGCTGATTCTCCT+TGG | + | chr5.4:77716181-77716200 | MS.gene020952:CDS | 35.0% |
| !! | ACTTCTAAAGTCACACACAT+AGG | - | chr5.4:77716444-77716463 | None:intergenic | 35.0% |
| !! | ATCGATTTTGATGTGCATGT+TGG | + | chr5.4:77717633-77717652 | MS.gene020952:CDS | 35.0% |
| !!! | ACACTGATTTTTGAGTTGCA+TGG | + | chr5.4:77717756-77717775 | MS.gene020952:intron | 35.0% |
| ACATGGGTCAGGCAATTATT+GGG | - | chr5.4:77716835-77716854 | None:intergenic | 40.0% | |
| AGCTACGATGATTGCAGATT+GGG | - | chr5.4:77718301-77718320 | None:intergenic | 40.0% | |
| AGTAGGGAGAGTAGATCAAA+TGG | + | chr5.4:77718495-77718514 | MS.gene020952:intron | 40.0% | |
| CACAACCATGTGACAATTTC+AGG | + | chr5.4:77717482-77717501 | MS.gene020952:intron | 40.0% | |
| CACATAGCAAAAGTGAATGC+AGG | + | chr5.4:77717215-77717234 | MS.gene020952:intron | 40.0% | |
| CACTTATACCATAAACCACG+TGG | - | chr5.4:77716928-77716947 | None:intergenic | 40.0% | |
| CGTGGTTTATGGTATAAGTG+TGG | + | chr5.4:77716928-77716947 | MS.gene020952:intron | 40.0% | |
| CTTCCACAGTTCATTCATCT+AGG | - | chr5.4:77718841-77718860 | None:intergenic | 40.0% | |
| GCTAGAGCAGATAGCAAAAT+TGG | + | chr5.4:77717842-77717861 | MS.gene020952:CDS | 40.0% | |
| GCTCTTAACTGGCAATGATT+GGG | + | chr5.4:77716885-77716904 | MS.gene020952:intron | 40.0% | |
| GGACATCTAGATTCTGTAGT+AGG | + | chr5.4:77718478-77718497 | MS.gene020952:intron | 40.0% | |
| GTTGCTCAAAGTAAGAGAAG+TGG | - | chr5.4:77717659-77717678 | None:intergenic | 40.0% | |
| TAATTAAGGTCGGCCATCAT+AGG | + | chr5.4:77717012-77717031 | MS.gene020952:intron | 40.0% | |
| TACGGAATGCAGTGAATGAT+GGG | + | chr5.4:77718951-77718970 | MS.gene020952:intron | 40.0% | |
| TAGCTACGATGATTGCAGAT+TGG | - | chr5.4:77718302-77718321 | None:intergenic | 40.0% | |
| TCTTAACCGATCAACTCGTT+TGG | - | chr5.4:77718340-77718359 | None:intergenic | 40.0% | |
| TGCTCTTAACTGGCAATGAT+TGG | + | chr5.4:77716884-77716903 | MS.gene020952:intron | 40.0% | |
| TTGCTATCTGCTCTAGCAAA+GGG | - | chr5.4:77717839-77717858 | None:intergenic | 40.0% | |
| TTTGAGCAACATGCCAAAGA+CGG | + | chr5.4:77717669-77717688 | MS.gene020952:CDS | 40.0% | |
| ! | CTAGGGTTTTCAAAGGCTTT+TGG | + | chr5.4:77716805-77716824 | MS.gene020952:intron | 40.0% |
| ! | CTTGTCTAGAACATAGTCCT+GGG | + | chr5.4:77716667-77716686 | MS.gene020952:intron | 40.0% |
| ! | TCTTGAATTTGTTCACCAGC+CGG | - | chr5.4:77717516-77717535 | None:intergenic | 40.0% |
| ! | TCTTGTCTAGAACATAGTCC+TGG | + | chr5.4:77716666-77716685 | MS.gene020952:intron | 40.0% |
| ! | TGATGAAGGTGTAGATCTTG+TGG | + | chr5.4:77716212-77716231 | MS.gene020952:CDS | 40.0% |
| ! | TGATTGGGTGTTGTAAGTAG+GGG | + | chr5.4:77716900-77716919 | MS.gene020952:intron | 40.0% |
| ! | TTGTCTAGAACATAGTCCTG+GGG | + | chr5.4:77716668-77716687 | MS.gene020952:intron | 40.0% |
| ! | TTTGCTATCTGCTCTAGCAA+AGG | - | chr5.4:77717840-77717859 | None:intergenic | 40.0% |
| ! | TTTTATAGGGTTCCCAGCTA+GGG | + | chr5.4:77716788-77716807 | MS.gene020952:intron | 40.0% |
| !! | GAATTTGTTGCTCACAAACC+AGG | + | chr5.4:77717564-77717583 | MS.gene020952:CDS | 40.0% |
| !! | TTAGCTTCTAGGGCAATGAT+CGG | - | chr5.4:77716761-77716780 | None:intergenic | 40.0% |
| !! | TTTGAATCAGCAGCACTGAT+TGG | + | chr5.4:77719004-77719023 | MS.gene020952:CDS | 40.0% |
| AAGTGAATGCAGGTCACACA+TGG | + | chr5.4:77717225-77717244 | MS.gene020952:intron | 45.0% | |
| AATACCTATTGCTTGGCGGT+CGG | - | chr5.4:77717919-77717938 | None:intergenic | 45.0% | |
| AATGCAGGTCACACATGGTT+AGG | + | chr5.4:77717230-77717249 | MS.gene020952:intron | 45.0% | |
| ACAACCTCCAGTCATCAGAA+AGG | + | chr5.4:77717123-77717142 | MS.gene020952:intron | 45.0% | |
| ACGCTTGTTTGAGCGAAAGT+TGG | + | chr5.4:77719057-77719076 | MS.gene020952:CDS | 45.0% | |
| AGGGAGAGTAGATCAAATGG+AGG | + | chr5.4:77718498-77718517 | MS.gene020952:intron | 45.0% | |
| ATCATAGGTTCCCTTGGTTG+GGG | + | chr5.4:77717027-77717046 | MS.gene020952:intron | 45.0% | |
| CATCATAGGTTCCCTTGGTT+GGG | + | chr5.4:77717026-77717045 | MS.gene020952:intron | 45.0% | |
| CCTTCATCACCATAATGCCA+AGG | - | chr5.4:77716201-77716220 | None:intergenic | 45.0% | |
| CGCTTGTTTGAGCGAAAGTT+GGG | + | chr5.4:77719058-77719077 | MS.gene020952:CDS | 45.0% | |
| CTAGCTGGGAACCCTATAAA+AGG | - | chr5.4:77716789-77716808 | None:intergenic | 45.0% | |
| GACATGGGTCAGGCAATTAT+TGG | - | chr5.4:77716836-77716855 | None:intergenic | 45.0% | |
| GAGGTTGTGTTCAGTATCAG+GGG | - | chr5.4:77717111-77717130 | None:intergenic | 45.0% | |
| GGAGGTTGTGTTCAGTATCA+GGG | - | chr5.4:77717112-77717131 | None:intergenic | 45.0% | |
| GTACGGAATGCAGTGAATGA+TGG | + | chr5.4:77718950-77718969 | MS.gene020952:intron | 45.0% | |
| GTGCTTTGTGTACTGCTCTT+CGG | - | chr5.4:77718982-77719001 | None:intergenic | 45.0% | |
| TCCAGTCATCAGAAAGGAGA+AGG | + | chr5.4:77717129-77717148 | MS.gene020952:intron | 45.0% | |
| TGGAGGTTGTGTTCAGTATC+AGG | - | chr5.4:77717113-77717132 | None:intergenic | 45.0% | |
| TTCTCCTTTCTGATGACTGG+AGG | - | chr5.4:77717130-77717149 | None:intergenic | 45.0% | |
| TTGTGTTCAGTATCAGGGGT+CGG | - | chr5.4:77717107-77717126 | None:intergenic | 45.0% | |
| ! | AAATAAGCGTAGTGGAGACG+AGG | + | chr5.4:77718407-77718426 | MS.gene020952:intron | 45.0% |
| ! | AAGCCTTTGAAAACCCTAGC+TGG | - | chr5.4:77716804-77716823 | None:intergenic | 45.0% |
| ! | AAGGCACTTTCAGAAACCGT+GGG | + | chr5.4:77717148-77717167 | MS.gene020952:intron | 45.0% |
| ! | ACAATTTCAGGTAAAGGGGC+CGG | + | chr5.4:77717494-77717513 | MS.gene020952:intron | 45.0% |
| ! | AGCCTTTGAAAACCCTAGCT+GGG | - | chr5.4:77716803-77716822 | None:intergenic | 45.0% |
| ! | CAAAGCCTTTTCCCACTACA+TGG | - | chr5.4:77718651-77718670 | None:intergenic | 45.0% |
| ! | CATGTAGTGGGAAAAGGCTT+TGG | + | chr5.4:77718649-77718668 | MS.gene020952:intron | 45.0% |
| ! | CCTTGGCATTATGGTGATGA+AGG | + | chr5.4:77716198-77716217 | MS.gene020952:CDS | 45.0% |
| ! | CTTTTATAGGGTTCCCAGCT+AGG | + | chr5.4:77716787-77716806 | MS.gene020952:intron | 45.0% |
| ! | GCTGATTCTCCTTGGCATTA+TGG | + | chr5.4:77716189-77716208 | MS.gene020952:CDS | 45.0% |
| ! | GGTGGTTTCCTAGGGTTTTA+GGG | + | chr5.4:77716709-77716728 | MS.gene020952:intron | 45.0% |
| ! | TTCCCAGCTAGGGTTTTCAA+AGG | + | chr5.4:77716798-77716817 | MS.gene020952:intron | 45.0% |
| !! | ACGACACCAAACGAGTTGAT+CGG | + | chr5.4:77718331-77718350 | MS.gene020952:intron | 45.0% |
| !! | AGAAGAGGCATTACCGTCTT+TGG | - | chr5.4:77717685-77717704 | None:intergenic | 45.0% |
| !!! | ATTTATATTTCTAATTTTTA+AGG | - | chr5.4:77717301-77717320 | None:intergenic | 5.0% |
| AAAAGTCCAAGCCCCAACCA+AGG | - | chr5.4:77717041-77717060 | None:intergenic | 50.0% | |
| AAAGTCCAAGCCCCAACCAA+GGG | - | chr5.4:77717040-77717059 | None:intergenic | 50.0% | |
| ACAGACGCCAGGTTCTGTTA+CGG | - | chr5.4:77717072-77717091 | None:intergenic | 50.0% | |
| ACAGTGGCATGGTTATGGAC+TGG | - | chr5.4:77716619-77716638 | None:intergenic | 50.0% | |
| AGCTCATGTTCGGTACAGTC+AGG | - | chr5.4:77717180-77717199 | None:intergenic | 50.0% | |
| AGGAAACCACCCTCTTACCA+GGG | - | chr5.4:77716700-77716719 | None:intergenic | 50.0% | |
| AGTGTGTGTGTGTGAGAGAG+TGG | + | chr5.4:77716732-77716751 | MS.gene020952:intron | 50.0% | |
| CACACACTCCCTAAAACCCT+AGG | - | chr5.4:77716720-77716739 | None:intergenic | 50.0% | |
| CCAACCAAGGGAACCTATGA+TGG | - | chr5.4:77717028-77717047 | None:intergenic | 50.0% | |
| CCATCATAGGTTCCCTTGGT+TGG | + | chr5.4:77717025-77717044 | MS.gene020952:intron | 50.0% | |
| CGATGATTGCAGATTGGGAC+AGG | - | chr5.4:77718296-77718315 | None:intergenic | 50.0% | |
| GCCTTCTCCTTTCTGATGAC+TGG | - | chr5.4:77717133-77717152 | None:intergenic | 50.0% | |
| GGTAAGAGGGTGGTTTCCTA+GGG | + | chr5.4:77716701-77716720 | MS.gene020952:intron | 50.0% | |
| GTGTGTGTGTGTGAGAGAGT+GGG | + | chr5.4:77716733-77716752 | MS.gene020952:intron | 50.0% | |
| TAGGAAACCACCCTCTTACC+AGG | - | chr5.4:77716701-77716720 | None:intergenic | 50.0% | |
| TGGTAAGAGGGTGGTTTCCT+AGG | + | chr5.4:77716700-77716719 | MS.gene020952:intron | 50.0% | |
| ! | AACCTGGCGTCTGTGCTTTT+GGG | + | chr5.4:77717078-77717097 | MS.gene020952:intron | 50.0% |
| ! | GGGTGGTTTCCTAGGGTTTT+AGG | + | chr5.4:77716708-77716727 | MS.gene020952:intron | 50.0% |
| ! | TGGTTGGGGCTTGGACTTTT+CGG | + | chr5.4:77717041-77717060 | MS.gene020952:intron | 50.0% |
| !! | GAAGGCACTTTCAGAAACCG+TGG | + | chr5.4:77717147-77717166 | MS.gene020952:intron | 50.0% |
| !! | TAGGGGTACCACGTGGTTTA+TGG | + | chr5.4:77716917-77716936 | MS.gene020952:intron | 50.0% |
| !! | TTGTAAGTAGGGGTACCACG+TGG | + | chr5.4:77716910-77716929 | MS.gene020952:intron | 50.0% |
| AGGATGTTGCGTTGGACGTG+TGG | + | chr5.4:77718427-77718446 | MS.gene020952:intron | 55.0% | |
| ATGTGAGTGCGACCAACAGG+GGG | - | chr5.4:77716964-77716983 | None:intergenic | 55.0% | |
| CAAACCGACCGCCAAGCAAT+AGG | + | chr5.4:77717912-77717931 | MS.gene020952:CDS | 55.0% | |
| CATGTGAGTGCGACCAACAG+GGG | - | chr5.4:77716965-77716984 | None:intergenic | 55.0% | |
| CCATGTGAGTGCGACCAACA+GGG | - | chr5.4:77716966-77716985 | None:intergenic | 55.0% | |
| GAGTTGTGGACACCCTCAGA+TGG | + | chr5.4:77716985-77717004 | MS.gene020952:intron | 55.0% | |
| GGAAACCACCCTCTTACCAG+GGG | - | chr5.4:77716699-77716718 | None:intergenic | 55.0% | |
| GGGTTCAACCCCTGGTAAGA+GGG | + | chr5.4:77716688-77716707 | MS.gene020952:intron | 55.0% | |
| GTCGCACTCACATGGAGTTG+TGG | + | chr5.4:77716971-77716990 | MS.gene020952:intron | 55.0% | |
| TACAGTCAGGTCGCTACCCA+CGG | - | chr5.4:77717167-77717186 | None:intergenic | 55.0% | |
| TCCATGTGAGTGCGACCAAC+AGG | - | chr5.4:77716967-77716986 | None:intergenic | 55.0% | |
| TCGGCCATCATAGGTTCCCT+TGG | + | chr5.4:77717021-77717040 | MS.gene020952:intron | 55.0% | |
| TGCCTGACCCATGTCCCATT+GGG | + | chr5.4:77716841-77716860 | MS.gene020952:intron | 55.0% | |
| TGGAGACGAGGATGTTGCGT+TGG | + | chr5.4:77718419-77718438 | MS.gene020952:intron | 55.0% | |
| TTCAACCCCTGGTAAGAGGG+TGG | + | chr5.4:77716691-77716710 | MS.gene020952:intron | 55.0% | |
| TTGCCTGACCCATGTCCCAT+TGG | + | chr5.4:77716840-77716859 | MS.gene020952:intron | 55.0% | |
| ! | ACCTGGCGTCTGTGCTTTTG+GGG | + | chr5.4:77717079-77717098 | MS.gene020952:intron | 55.0% |
| ! | GAACCTGGCGTCTGTGCTTT+TGG | + | chr5.4:77717077-77717096 | MS.gene020952:intron | 55.0% |
| ! | GGTTGGGGCTTGGACTTTTC+GGG | + | chr5.4:77717042-77717061 | MS.gene020952:intron | 55.0% |
| ACCCCAATGGGACATGGGTC+AGG | - | chr5.4:77716846-77716865 | None:intergenic | 60.0% | |
| ACCTGCACCCCAATGGGACA+TGG | - | chr5.4:77716852-77716871 | None:intergenic | 60.0% | |
| AGGTTCCCTTGGTTGGGGCT+TGG | + | chr5.4:77717032-77717051 | MS.gene020952:intron | 60.0% | |
| CCCTGTTGGTCGCACTCACA+TGG | + | chr5.4:77716963-77716982 | MS.gene020952:intron | 60.0% | |
| CCTGCACCCCAATGGGACAT+GGG | - | chr5.4:77716851-77716870 | None:intergenic | 60.0% | |
| CTTACCAGGGGTTGAACCCC+AGG | - | chr5.4:77716687-77716706 | None:intergenic | 60.0% | |
| GCCTGACCCATGTCCCATTG+GGG | + | chr5.4:77716842-77716861 | MS.gene020952:intron | 60.0% | |
| GGGGTTCAACCCCTGGTAAG+AGG | + | chr5.4:77716687-77716706 | MS.gene020952:intron | 60.0% | |
| GGGTCAGCCGTAACAGAACC+TGG | + | chr5.4:77717062-77717081 | MS.gene020952:intron | 60.0% | |
| TAGTCCTGGGGTTCAACCCC+TGG | + | chr5.4:77716680-77716699 | MS.gene020952:intron | 60.0% | |
| ! | ACCCCAAAAGCACAGACGCC+AGG | - | chr5.4:77717083-77717102 | None:intergenic | 60.0% |
| ! | GGGTTGCTACTTCCCCCTGT+TGG | + | chr5.4:77716949-77716968 | MS.gene020952:intron | 60.0% |
| ! | TTTCAGGTAAAGGGGCCGGC+TGG | + | chr5.4:77717498-77717517 | MS.gene020952:intron | 60.0% |
| CCCATGTCCCATTGGGGTGC+AGG | + | chr5.4:77716848-77716867 | MS.gene020952:intron | 65.0% | |
| GCTGGGACCTGCACCCCAAT+GGG | - | chr5.4:77716858-77716877 | None:intergenic | 65.0% | |
| TGCTGGGACCTGCACCCCAA+TGG | - | chr5.4:77716859-77716878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 77716021 | 77719096 | 77716021 | ID=MS.gene020952 |
| chr5.4 | mRNA | 77716021 | 77719096 | 77716021 | ID=MS.gene020952.t1;Parent=MS.gene020952 |
| chr5.4 | exon | 77716021 | 77716233 | 77716021 | ID=MS.gene020952.t1.exon1;Parent=MS.gene020952.t1 |
| chr5.4 | CDS | 77716021 | 77716233 | 77716021 | ID=cds.MS.gene020952.t1;Parent=MS.gene020952.t1 |
| chr5.4 | exon | 77717504 | 77717690 | 77717504 | ID=MS.gene020952.t1.exon2;Parent=MS.gene020952.t1 |
| chr5.4 | CDS | 77717504 | 77717690 | 77717504 | ID=cds.MS.gene020952.t1;Parent=MS.gene020952.t1 |
| chr5.4 | exon | 77717826 | 77717933 | 77717826 | ID=MS.gene020952.t1.exon3;Parent=MS.gene020952.t1 |
| chr5.4 | CDS | 77717826 | 77717933 | 77717826 | ID=cds.MS.gene020952.t1;Parent=MS.gene020952.t1 |
| chr5.4 | exon | 77718963 | 77719096 | 77718963 | ID=MS.gene020952.t1.exon4;Parent=MS.gene020952.t1 |
| chr5.4 | CDS | 77718963 | 77719096 | 77718963 | ID=cds.MS.gene020952.t1;Parent=MS.gene020952.t1 |
| Gene Sequence |
| Protein sequence |
