AlfalfaGEDB | MS.gene021549

M. sativa cultivar XinJiangDaYe / MS.gene021549

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18 PF10533.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021549.t1	XP_013465713.1	91.8	343	25	2	1	343	1	340	1.00E-162	582.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021549.t1	Q9SV15	59.6	356	98	12	1	342	1	324	3.4e-93	343.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021549.t1	A0A072VCI7	91.8	343	25	2	1	343	1	340	7.5e-163	582.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene021549.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene021549	MS.gene021548	PPI
MS.gene021549	MS.gene86268	PPI
MS.gene021549	MS.gene54277	PPI
MS.gene54046	MS.gene021549	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021549.t1	MTR_1g009613	97.668	343	5	2	1	343	1	340	0.0	682
MS.gene021549.t1	MTR_0229s0060	97.107	242	4	2	1	242	1	239	1.69e-167	466
MS.gene021549.t1	MTR_4g127040	50.427	351	96	10	1	322	1	302	4.34e-88	268
MS.gene021549.t1	MTR_4g094908	39.899	396	127	13	1	343	1	338	8.06e-67	214
MS.gene021549.t1	MTR_3g108960	64.024	164	51	5	170	331	222	379	2.00e-62	204
MS.gene021549.t1	MTR_5g016610	58.394	137	50	2	208	343	141	271	1.26e-51	172
MS.gene021549.t1	MTR_0117s0040	65.823	79	27	0	244	322	53	131	1.86e-33	124
MS.gene021549.t1	MTR_2g032030	57.955	88	32	2	240	322	237	324	7.58e-29	115
MS.gene021549.t1	MTR_2g032030	57.955	88	32	2	240	322	237	324	7.66e-29	116
MS.gene021549.t1	MTR_7g079040	62.195	82	26	2	241	322	135	211	1.82e-28	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021549.t1	AT4G31550	59.551	356	98	12	1	342	1	324	1.80e-127	368
MS.gene021549.t1	AT4G31550	59.551	356	97	13	1	342	1	323	1.37e-126	366
MS.gene021549.t1	AT2G24570	59.659	352	100	14	1	342	1	320	1.24e-117	343
MS.gene021549.t1	AT4G31550	55.556	297	88	11	1	285	1	265	2.67e-90	271
MS.gene021549.t1	AT4G24240	43.258	356	154	12	1	324	1	340	2.78e-68	218
MS.gene021549.t1	AT2G23320	38.527	353	134	9	1	324	1	299	4.87e-63	203
MS.gene021549.t1	AT3G04670	37.500	344	160	11	11	323	1	320	1.44e-56	187
MS.gene021549.t1	AT2G30590	54.913	173	65	5	154	322	207	370	2.41e-55	185
MS.gene021549.t1	AT5G28650	35.942	345	164	11	11	323	1	320	2.62e-51	173
MS.gene021549.t1	AT2G23320	33.968	315	123	10	1	285	1	260	1.17e-34	128

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Find 102 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCAGTGGAACTCAT+GGG	0.610326	1.4:-10213227	MS.gene021549:CDS
AAAGACCGCCGATATACCAC+CGG	0.663684	1.4:-10211059	MS.gene021549:CDS
AAATACCAAACCCACAATCC+CGG	0.560277	1.4:+10210735	None:intergenic
AAATCGAGTGTCATGCTGTG+TGG	0.710920	1.4:+10212828	None:intergenic
AAATGGCAGTGGAACTCATG+GGG	0.650555	1.4:-10213226	MS.gene021549:CDS
AACATTCCGATGACGTTTCA+GGG	0.431021	1.4:-10212548	MS.gene021549:CDS
AACCGGGGCGCGTCTGAACC+GGG	0.500032	1.4:+10213025	None:intergenic
AACCGGTGGTGATGAAGATG+AGG	0.659341	1.4:+10212995	None:intergenic
AAGAAAAGGTGTCATGATCA+TGG	0.525519	1.4:-10212573	MS.gene021549:CDS
AAGATGAGGAGGAATGAACC+GGG	0.573874	1.4:+10213009	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTCATGGTCATTCA+TGG	+	chr1.4:10212634-10212653	None:intergenic	30.0%
AAAGAAAGGGAAAAGGTTAA+TGG	-	chr1.4:10211800-10211819	MS.gene021549:intron	30.0%
AAGTTAAGTTAGACCTAGAT+TGG	-	chr1.4:10212589-10212608	MS.gene021549:CDS	30.0%
ACCCTGAAGTAATTCAAAAT+AGG	-	chr1.4:10212450-10212469	MS.gene021549:intron	30.0%
AGTATTTCCCATATTCCAAT+TGG	+	chr1.4:10212711-10212730	None:intergenic	30.0%
AGTCAAAGCAATTAAGTGAA+GGG	+	chr1.4:10212057-10212076	None:intergenic	30.0%
AGTTGAGTGTTTAATTGAGT+TGG	+	chr1.4:10210840-10210859	None:intergenic	30.0%
ATTATGTTAATCTACGGAGT+AGG	+	chr1.4:10211585-10211604	None:intergenic	30.0%
CAAACGTTAATGCATGTAAT+AGG	+	chr1.4:10211661-10211680	None:intergenic	30.0%
TAAGTGAAGGGAATTGAAAA+AGG	+	chr1.4:10212045-10212064	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	10210723	10213246	10210723	ID=MS.gene021549
chr1.4	mRNA	10210723	10213246	10210723	ID=MS.gene021549.t1;Parent=MS.gene021549
chr1.4	exon	10212519	10213246	10212519	ID=MS.gene021549.t1.exon1;Parent=MS.gene021549.t1
chr1.4	CDS	10212519	10213246	10212519	ID=cds.MS.gene021549.t1;Parent=MS.gene021549.t1
chr1.4	exon	10211001	10211126	10211001	ID=MS.gene021549.t1.exon2;Parent=MS.gene021549.t1
chr1.4	CDS	10211001	10211126	10211001	ID=cds.MS.gene021549.t1;Parent=MS.gene021549.t1
chr1.4	exon	10210723	10210900	10210723	ID=MS.gene021549.t1.exon3;Parent=MS.gene021549.t1
chr1.4	CDS	10210723	10210900	10210723	ID=cds.MS.gene021549.t1;Parent=MS.gene021549.t1

Gene Sequence

>MS.gene021549

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAGCTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGTGAACATTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGGTACACCTACACTCCTTTATCTGCGTTTCACTCAATTATAATCCTTTTAGAGTTTACCTTTGAATGGAAGGTGTTTCTGATGTCCAATATGTGGTAGTGTTTGCGACAATCAATGATAATATTTTTTTTTTCCTACTCCGTAGATTAACATAATGACAAATAACCATCAAAACTCATACAAGTGATAAAACAACAAAGACTCGTAACCCTATTACATGCATTAACGTTTGTCCTAACAATTTTGATATTTTTACCGGTGGTTAGGTTAAAGTATGTGGACGGTCATGTATATATTTTTGATTTTTGATTGGAGCCTTTTTTGTTTGACTCGTTCACATTAATTAGAAATAAAGAAAGGGAAAAGGTTAATGGTTTCTTAACGAATCACGTGAATTTGTCGTGTGAGTGGGGTATGGCTACGTTTGGAGTCAACGATTTCGGTGGTGGTGTGGTTAAAATGCTTTAATAGGTAACAGTGTGCTTGAAAGTGACAAGACAACATAGGGTTCTGTTTTTGCTGTCTGAGAAAGAAAACACTAGAGAGAAATTCAAAAGTTCAAACAAAGTTAAAGTGATGTGAACTCTCTTTTTCCTTTTTCAATTCCCTTCACTTAATTGCTTTGACTGTTGACATTTTTTGTTAATTTATTTAAGGGAAATGTTAACTTGTGCCCTTAAGGCACAAATTAATGATTCAAATATAGAAATAAATTATTGGAATGTGTGCATTTTATTTAGTCTTTAACTTTTAAATGCATTGGATGCACAAAATTTTAAAAAACATTTCTTCTTTTGGATTTCTTAACATGTGCCCCAAGGGCACAAGTTAACACTATCCTTTATTTAATGCACCCATCCCCAGCGCATGTTAGCAAAATAGTGTAACCCATTTTTGATTATGACTTATGAGTTCAAATTAAATTGAGGGATAATAAGATTTTAATTTTTGTGTATCATATCATTTTATTCAAGTTTTGGAGTACTGTAGTCACTCTTTTGACCCTGAAGTAATTCAAAATAGGATCCCATGAGTTAGGGTTTCGTAGTCACATAGTCAGAACATCGATGATCATTTAGATTGTAGATATGAAAATACAAATTTCAATTTTTATTTTACAATTCAATGTACAGAGCTTAGAAGTTAAGTTAGACCTAGATTGGCCCGATTTTAAACGAACGACCATGAATGACCATGAATGTTTTGACCGCATAAGATCATAGTAATGTTTTAGTTAACTTGGAACGTTTTACTCCTATCCAATTGGAATATGGGAAATACTTATGATTTATTTATTCATTATAATCATGATTGCAATATTGAATTCATTCATTATGATTATACTGTAATATTGAACAGAAGTATCAAGTTTCTTGAATTTGATTTTTGTTCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGGTAAGAGTTATACACAATCAATCTAAGCTCGACCGTTAACTATGTTGACTATTATTAAAGACCTGTTTTCTAACGTTGATTTATTCTTTCTTTTAATCAGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACGATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA

Protein sequence

>MS.gene021549.t1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST