AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54277


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54277.t1 MTR_1g009613 97.376 343 6 2 1 343 1 340 0.0 681
MS.gene54277.t1 MTR_0229s0060 96.694 242 5 2 1 242 1 239 7.35e-167 464
MS.gene54277.t1 MTR_4g127040 50.427 351 96 10 1 322 1 302 2.64e-88 268
MS.gene54277.t1 MTR_4g094908 40.152 396 126 13 1 343 1 338 3.37e-67 214
MS.gene54277.t1 MTR_3g108960 64.634 164 50 5 170 331 222 379 8.86e-63 205
MS.gene54277.t1 MTR_5g016610 59.124 137 49 2 208 343 141 271 5.42e-52 173
MS.gene54277.t1 MTR_0117s0040 65.823 79 27 0 244 322 53 131 1.90e-33 124
MS.gene54277.t1 MTR_2g032030 57.955 88 32 2 240 322 237 324 7.65e-29 115
MS.gene54277.t1 MTR_2g032030 57.955 88 32 2 240 322 237 324 7.81e-29 116
MS.gene54277.t1 MTR_7g079040 62.195 82 26 2 241 322 135 211 1.99e-28 112
MS.gene54277.t1 MTR_2g016770 54.762 84 37 1 242 324 11 94 1.16e-27 108
MS.gene54277.t1 MTR_2g016770 55.422 83 36 1 243 324 4 86 3.06e-27 106
MS.gene54277.t1 MTR_8g087000 52.809 89 35 1 241 322 45 133 8.34e-27 106
MS.gene54277.t1 MTR_2g083870 55.556 90 34 2 241 324 50 139 2.03e-26 105
MS.gene54277.t1 MTR_7g109600 51.136 88 38 1 240 322 23 110 4.24e-26 105
MS.gene54277.t1 MTR_8g087000 52.874 87 34 1 243 322 48 134 5.09e-26 104
MS.gene54277.t1 MTR_8g028565 58.537 82 29 1 241 322 136 212 1.23e-25 105
MS.gene54277.t1 MTR_4g082580 50.505 99 37 3 240 327 242 339 7.70e-23 98.6
MS.gene54277.t1 MTR_5g042920 57.317 82 31 2 249 327 301 381 1.24e-22 98.6
MS.gene54277.t1 MTR_5g042920 34.320 169 90 7 162 324 55 208 3.39e-13 70.5
MS.gene54277.t1 MTR_3g031220 40.690 145 74 4 192 326 283 425 2.34e-22 98.2
MS.gene54277.t1 MTR_3g031220 50.000 68 32 2 266 333 199 264 2.25e-12 68.2
MS.gene54277.t1 MTR_2g024350 59.375 64 26 0 259 322 2 65 5.13e-22 93.2
MS.gene54277.t1 MTR_1g099600 50.000 80 39 1 244 322 163 242 5.79e-22 94.7
MS.gene54277.t1 MTR_5g094430 52.381 84 36 2 247 327 209 291 6.16e-22 96.3
MS.gene54277.t1 MTR_5g094430 52.381 84 36 2 247 327 231 313 6.18e-22 96.3
MS.gene54277.t1 MTR_5g094430 52.381 84 36 2 247 327 343 425 8.14e-22 96.7
MS.gene54277.t1 MTR_7g109800 38.356 146 78 5 181 322 64 201 1.55e-21 93.2
MS.gene54277.t1 MTR_3g056100 49.474 95 39 3 241 327 239 332 3.58e-21 94.4
MS.gene54277.t1 MTR_3g056100 46.667 105 46 4 241 337 383 485 3.90e-21 94.7
MS.gene54277.t1 MTR_3g056100 49.474 95 39 3 241 327 226 319 3.98e-21 94.0
MS.gene54277.t1 MTR_2g024380 62.295 61 23 0 262 322 248 308 3.99e-21 94.4
MS.gene54277.t1 MTR_3g056100 46.667 105 46 4 241 337 370 472 4.08e-21 94.7
MS.gene54277.t1 MTR_7g011820 53.012 83 35 2 248 327 390 471 7.31e-21 94.0
MS.gene54277.t1 MTR_7g011820 47.059 85 39 4 257 337 219 301 1.05e-13 72.4
MS.gene54277.t1 MTR_5g074400 56.098 82 32 2 249 327 401 481 9.32e-21 93.6
MS.gene54277.t1 MTR_5g074400 54.386 57 24 2 266 322 244 298 8.88e-12 66.6
MS.gene54277.t1 MTR_4g094588 44.706 85 46 1 252 336 165 248 1.25e-20 91.7
MS.gene54277.t1 MTR_4g013260 53.165 79 33 2 249 324 317 394 1.27e-20 92.8
MS.gene54277.t1 MTR_4g013260 50.877 57 27 1 266 322 185 240 7.34e-12 66.6
MS.gene54277.t1 MTR_3g009470 52.439 82 38 1 246 327 476 556 2.12e-20 92.8
MS.gene54277.t1 MTR_3g009470 54.386 57 24 2 266 322 281 335 2.41e-12 68.6
MS.gene54277.t1 MTR_8g098945 61.404 57 22 0 266 322 130 186 4.56e-20 89.0
MS.gene54277.t1 MTR_2g088000 47.561 82 43 0 249 330 333 414 8.06e-20 90.9
MS.gene54277.t1 MTR_7g080020 48.421 95 46 2 246 338 474 567 8.74e-20 90.9
MS.gene54277.t1 MTR_7g080020 50.000 68 29 3 255 322 273 335 5.30e-12 67.4
MS.gene54277.t1 MTR_7g071120 39.568 139 65 5 192 327 263 385 1.10e-19 90.1
MS.gene54277.t1 MTR_7g071120 54.386 57 24 2 266 322 167 221 7.29e-11 63.5
MS.gene54277.t1 MTR_7g080000 49.398 83 38 2 248 327 412 493 1.39e-19 90.1
MS.gene54277.t1 MTR_7g080000 54.386 57 24 2 266 322 235 289 5.11e-12 67.4
MS.gene54277.t1 MTR_7g079010 31.677 161 94 4 184 329 45 204 1.85e-19 85.9
MS.gene54277.t1 MTR_7g100510 51.471 68 32 1 257 324 353 419 2.28e-19 89.0
MS.gene54277.t1 MTR_7g100510 47.619 84 41 3 257 339 180 261 5.94e-16 79.0
MS.gene54277.t1 MTR_2g023930 48.649 74 38 0 249 322 289 362 3.69e-19 89.0
MS.gene54277.t1 MTR_7g110720 39.437 142 58 7 189 322 152 273 8.25e-19 87.4
MS.gene54277.t1 MTR_7g062220 38.261 115 64 4 210 322 71 180 1.04e-18 85.9
MS.gene54277.t1 MTR_4g132430 47.368 76 40 0 249 324 111 186 1.06e-18 86.3
MS.gene54277.t1 MTR_5g091390 45.679 81 43 1 252 332 144 223 1.27e-18 85.5
MS.gene54277.t1 MTR_4g132430 48.649 74 38 0 249 322 245 318 1.61e-18 86.7
MS.gene54277.t1 MTR_7g110720 47.368 76 40 0 249 324 173 248 1.84e-18 86.3
MS.gene54277.t1 MTR_4g007060 53.846 65 30 0 258 322 121 185 2.35e-18 84.3
MS.gene54277.t1 MTR_3g053330 43.421 76 43 0 249 324 235 310 2.46e-18 86.3
MS.gene54277.t1 MTR_1g086790 43.529 85 45 2 240 322 131 214 2.56e-18 84.7
MS.gene54277.t1 MTR_3g090860 40.441 136 54 8 210 337 84 200 2.57e-18 85.1
MS.gene54277.t1 MTR_3g106060 48.611 72 37 0 251 322 124 195 2.99e-18 84.0
MS.gene54277.t1 MTR_4g007060 53.846 65 30 0 258 322 155 219 3.41e-18 84.3
MS.gene54277.t1 MTR_1g015140 50.704 71 34 1 252 322 89 158 3.41e-18 80.9
MS.gene54277.t1 MTR_4g049790 53.731 67 31 0 266 332 313 379 3.86e-18 85.9
MS.gene54277.t1 MTR_2g105060 44.048 84 43 1 239 322 147 226 5.52e-18 83.6
MS.gene54277.t1 MTR_4g094412 39.796 98 40 1 244 322 194 291 5.94e-18 85.1
MS.gene54277.t1 MTR_2g105060 44.048 84 43 1 239 322 72 151 6.63e-18 82.0
MS.gene54277.t1 MTR_4g094412 39.796 98 40 1 244 322 203 300 7.34e-18 84.7
MS.gene54277.t1 MTR_7g009730 46.988 83 36 2 246 326 204 280 8.55e-18 84.7
MS.gene54277.t1 MTR_1g013760 52.632 57 27 0 266 322 141 197 9.72e-18 82.4
MS.gene54277.t1 MTR_2g033820 45.333 75 40 1 248 322 186 259 1.31e-17 83.2
MS.gene54277.t1 MTR_3g095080 45.783 83 41 2 251 330 127 208 1.44e-17 80.9
MS.gene54277.t1 MTR_8g092140 48.052 77 35 2 251 323 142 217 1.63e-17 80.9
MS.gene54277.t1 MTR_3g095080 45.783 83 41 2 251 330 151 232 1.71e-17 81.3
MS.gene54277.t1 MTR_3g104750 47.436 78 37 2 248 322 84 160 1.73e-17 79.3
MS.gene54277.t1 MTR_5g043880 43.902 82 45 1 241 322 100 180 1.95e-17 81.6
MS.gene54277.t1 MTR_8g007270 45.783 83 41 2 244 323 130 211 2.48e-17 80.1
MS.gene54277.t1 MTR_8g067635 45.833 96 46 2 242 337 329 418 3.12e-17 83.2
MS.gene54277.t1 MTR_8g092010 43.182 88 44 2 242 324 80 166 4.33e-17 78.6
MS.gene54277.t1 MTR_4g130900 57.895 57 23 1 266 322 360 415 5.31e-17 82.0
MS.gene54277.t1 MTR_4g107970 52.542 59 28 0 266 324 179 237 8.35e-17 81.6
MS.gene54277.t1 MTR_1g077780 45.783 83 44 1 246 328 43 124 9.82e-17 76.6
MS.gene54277.t1 MTR_4g107970 52.542 59 28 0 266 324 256 314 1.21e-16 81.3
MS.gene54277.t1 MTR_7g117200 43.529 85 44 2 240 320 91 175 1.44e-16 79.7
MS.gene54277.t1 MTR_7g028415 49.231 65 32 1 261 325 89 152 2.40e-16 76.3
MS.gene54277.t1 MTR_7g028710 49.231 65 32 1 261 325 89 152 2.40e-16 76.3
MS.gene54277.t1 MTR_8g069935 41.489 94 49 2 241 333 311 399 2.82e-16 80.1
MS.gene54277.t1 MTR_2g045360 52.542 59 28 0 266 324 212 270 3.32e-16 79.7
MS.gene54277.t1 MTR_4g122530 44.595 74 40 1 249 322 192 264 3.42e-16 79.3
MS.gene54277.t1 MTR_3g095040 45.000 80 43 1 243 322 96 174 3.83e-16 76.6
MS.gene54277.t1 MTR_5g097490 49.296 71 35 1 252 322 239 308 4.33e-16 79.0
MS.gene54277.t1 MTR_4g049760 50.746 67 33 0 266 332 291 357 4.53e-16 79.3
MS.gene54277.t1 MTR_8g067650 43.878 98 51 2 241 337 314 408 5.35e-16 79.3
MS.gene54277.t1 MTR_5g067680 43.182 88 44 3 236 320 175 259 9.13e-16 77.8
MS.gene54277.t1 MTR_1g013790 46.774 62 33 0 263 324 99 160 3.21e-15 74.7
MS.gene54277.t1 MTR_5g018380 60.345 58 20 2 265 322 123 177 4.28e-15 72.8
MS.gene54277.t1 MTR_8g027860 41.573 89 49 2 238 323 108 196 7.67e-15 75.1
MS.gene54277.t1 MTR_1g078260 58.065 62 24 2 262 322 244 304 1.42e-14 74.7
MS.gene54277.t1 MTR_6g086555 49.254 67 32 2 266 331 207 272 1.46e-14 74.7
MS.gene54277.t1 MTR_8g096730 39.706 68 40 1 262 329 67 133 5.86e-14 68.9
MS.gene54277.t1 MTR_8g099350 33.607 122 67 4 210 320 71 189 1.15e-13 71.6
MS.gene54277.t1 MTR_6g053200 36.145 83 48 1 240 322 310 387 1.16e-13 72.0
MS.gene54277.t1 MTR_3g031220 50.000 68 32 2 266 333 199 264 1.38e-12 68.6
MS.gene54277.t1 MTR_5g067700 42.857 84 39 3 239 320 87 163 1.60e-12 66.6
MS.gene54277.t1 MTR_3g009470 54.386 57 24 2 266 322 281 335 2.30e-12 68.2
MS.gene54277.t1 MTR_4g047580 42.169 83 46 1 248 330 266 346 8.88e-12 66.6
MS.gene54277.t1 MTR_2g075680 35.294 102 64 1 221 320 104 205 1.44e-11 64.7
MS.gene54277.t1 MTR_8g087000 63.158 38 14 0 285 322 35 72 2.56e-11 62.4
MS.gene54277.t1 MTR_3g093830 40.244 82 39 2 241 320 111 184 2.60e-11 64.3
MS.gene54277.t1 MTR_7g073430 36.842 95 56 3 229 320 86 179 4.73e-11 63.2
MS.gene54277.t1 MTR_2g075700 38.667 75 44 1 248 320 127 201 8.57e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54277.t1 AT4G31550 59.551 356 98 12 1 342 1 324 2.64e-127 368
MS.gene54277.t1 AT4G31550 59.551 356 97 13 1 342 1 323 2.92e-126 365
MS.gene54277.t1 AT2G24570 59.659 352 100 14 1 342 1 320 1.52e-117 343
MS.gene54277.t1 AT4G31550 55.556 297 88 11 1 285 1 265 3.32e-90 271
MS.gene54277.t1 AT4G24240 43.539 356 153 12 1 324 1 340 1.44e-68 219
MS.gene54277.t1 AT2G23320 38.983 354 131 10 1 324 1 299 5.14e-63 203
MS.gene54277.t1 AT3G04670 37.500 344 160 11 11 323 1 320 1.62e-56 187
MS.gene54277.t1 AT2G30590 55.491 173 64 5 154 322 207 370 1.02e-55 186
MS.gene54277.t1 AT5G28650 35.942 345 164 11 11 323 1 320 2.70e-51 173
MS.gene54277.t1 AT2G23320 33.968 315 123 10 1 285 1 260 1.20e-34 128
MS.gene54277.t1 AT3G04670 32.903 310 153 11 11 289 1 286 2.07e-31 120
MS.gene54277.t1 AT4G24240 55.172 116 42 3 170 285 196 301 1.01e-29 115
MS.gene54277.t1 AT2G34830 55.682 88 34 2 240 322 185 272 9.14e-29 115
MS.gene54277.t1 AT2G34830 55.682 88 34 2 240 322 194 281 1.03e-28 115
MS.gene54277.t1 AT1G29280 57.609 92 32 3 238 322 40 131 3.20e-28 110
MS.gene54277.t1 AT1G30650 54.545 88 35 2 240 322 187 274 2.64e-27 111
MS.gene54277.t1 AT4G01250 57.143 91 33 2 232 322 101 185 4.93e-26 105
MS.gene54277.t1 AT3G58710 55.682 88 33 2 241 322 40 127 1.18e-25 104
MS.gene54277.t1 AT3G58710 55.682 88 33 2 241 322 41 128 3.17e-25 103
MS.gene54277.t1 AT5G52830 54.878 82 33 1 241 322 145 222 1.39e-24 102
MS.gene54277.t1 AT2G38470 57.317 82 31 2 249 327 343 423 7.18e-23 99.8
MS.gene54277.t1 AT2G38470 54.386 57 24 2 266 322 185 239 8.43e-12 66.6
MS.gene54277.t1 AT5G45050 50.000 82 37 1 241 322 1160 1237 2.01e-21 96.3
MS.gene54277.t1 AT5G45050 50.000 82 37 1 241 322 1132 1209 2.06e-21 96.3
MS.gene54277.t1 AT2G03340 49.495 99 37 3 241 327 379 476 3.49e-21 94.7
MS.gene54277.t1 AT2G03340 50.746 67 30 3 259 324 243 307 5.89e-14 73.2
MS.gene54277.t1 AT1G13960 55.696 79 31 2 249 324 237 314 3.51e-21 93.6
MS.gene54277.t1 AT1G13960 54.839 62 25 3 262 322 72 131 8.34e-14 72.0
MS.gene54277.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.21e-21 90.1
MS.gene54277.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.21e-21 90.1
MS.gene54277.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.21e-21 90.1
MS.gene54277.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.21e-21 90.1
MS.gene54277.t1 AT1G13960 55.696 79 31 2 249 324 390 467 5.77e-21 94.0
MS.gene54277.t1 AT1G13960 54.839 62 25 3 262 322 225 284 8.64e-14 72.8
MS.gene54277.t1 AT2G04880 61.905 63 23 1 262 324 280 341 6.25e-21 93.6
MS.gene54277.t1 AT2G04880 61.905 63 23 1 262 324 304 365 8.09e-21 93.6
MS.gene54277.t1 AT5G45050 50.000 82 37 1 241 322 1021 1098 8.82e-21 94.4
MS.gene54277.t1 AT4G23550 50.000 80 36 1 245 324 124 199 9.17e-21 91.7
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.19e-20 92.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.19e-20 92.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.19e-20 92.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.19e-20 92.4
MS.gene54277.t1 AT5G49520 51.351 74 35 1 249 322 205 277 1.27e-20 92.4
MS.gene54277.t1 AT5G07100 46.739 92 48 1 233 324 202 292 1.53e-20 90.9
MS.gene54277.t1 AT1G29860 48.148 81 41 1 249 329 120 199 1.61e-20 90.5
MS.gene54277.t1 AT5G26170 51.389 72 34 1 252 323 100 170 2.12e-20 87.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 364 439 2.22e-20 92.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 292 367 2.24e-20 92.4
MS.gene54277.t1 AT4G26640 54.545 77 31 2 251 324 324 399 2.44e-20 92.4
MS.gene54277.t1 AT5G56270 53.659 82 37 1 246 327 468 548 3.64e-20 92.0
MS.gene54277.t1 AT5G56270 52.632 57 25 2 266 322 274 328 5.30e-11 64.3
MS.gene54277.t1 AT2G37260 42.742 124 63 3 201 324 212 327 4.91e-20 90.1
MS.gene54277.t1 AT2G37260 53.448 58 25 2 266 323 86 141 3.00e-12 67.4
MS.gene54277.t1 AT2G37260 42.742 124 63 3 201 324 210 325 6.55e-20 89.7
MS.gene54277.t1 AT2G37260 53.448 58 25 2 266 323 84 139 3.37e-12 67.0
MS.gene54277.t1 AT4G18170 46.154 91 48 1 234 324 141 230 6.56e-20 89.4
MS.gene54277.t1 AT2G37260 42.742 124 63 3 201 324 292 407 8.24e-20 90.1
MS.gene54277.t1 AT2G37260 53.448 58 25 2 266 323 166 221 2.89e-12 67.8
MS.gene54277.t1 AT4G39410 47.126 87 42 2 240 323 195 280 1.81e-19 87.8
MS.gene54277.t1 AT2G40740 44.565 92 48 2 232 320 139 230 2.27e-19 87.4
MS.gene54277.t1 AT4G04450 50.000 74 37 0 249 322 182 255 2.67e-19 89.0
MS.gene54277.t1 AT4G26440 51.220 82 39 1 246 327 353 433 3.00e-19 89.4
MS.gene54277.t1 AT4G26440 53.448 58 25 2 266 323 179 234 1.07e-11 66.2
MS.gene54277.t1 AT2G40740 44.565 92 48 2 232 320 148 239 3.25e-19 87.0
MS.gene54277.t1 AT4G04450 50.000 74 37 0 249 322 276 349 5.00e-19 88.6
MS.gene54277.t1 AT1G69310 48.837 86 39 3 240 322 120 203 5.70e-19 86.3
MS.gene54277.t1 AT1G69310 48.837 86 39 3 240 322 120 203 5.70e-19 86.3
MS.gene54277.t1 AT1G69310 48.837 86 39 3 240 322 120 203 5.70e-19 86.3
MS.gene54277.t1 AT2G47260 43.373 83 46 1 240 322 149 230 6.17e-19 86.7
MS.gene54277.t1 AT4G31800 46.575 73 39 0 250 322 96 168 1.01e-18 84.7
MS.gene54277.t1 AT3G01080 53.165 79 33 2 249 324 325 402 1.27e-18 87.0
MS.gene54277.t1 AT3G01080 56.452 62 24 3 262 322 201 260 1.57e-14 74.7
MS.gene54277.t1 AT3G01080 53.165 79 33 2 249 324 287 364 1.40e-18 86.7
MS.gene54277.t1 AT3G01080 56.452 62 24 3 262 322 163 222 1.78e-14 74.3
MS.gene54277.t1 AT4G31800 46.575 73 39 0 250 322 161 233 1.65e-18 85.1
MS.gene54277.t1 AT1G62300 48.649 74 38 0 249 322 296 369 1.65e-18 87.0
MS.gene54277.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.66e-18 87.0
MS.gene54277.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.66e-18 87.0
MS.gene54277.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.66e-18 87.0
MS.gene54277.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.66e-18 87.0
MS.gene54277.t1 AT5G46350 50.685 73 35 1 252 324 170 241 2.71e-18 84.7
MS.gene54277.t1 AT5G15130 47.561 82 42 1 243 324 164 244 3.63e-18 85.9
MS.gene54277.t1 AT5G15130 47.561 82 42 1 243 324 206 286 3.77e-18 85.9
MS.gene54277.t1 AT2G44745 41.414 99 54 2 227 322 104 201 1.04e-17 81.3
MS.gene54277.t1 AT3G62340 47.500 80 41 1 243 322 96 174 1.27e-17 82.0
MS.gene54277.t1 AT4G01720 48.649 74 38 0 249 322 223 296 1.78e-17 83.6
MS.gene54277.t1 AT5G45260 32.530 166 80 4 159 322 1132 1267 2.46e-17 84.0
MS.gene54277.t1 AT1G68150 56.140 57 25 0 266 322 236 292 7.66e-17 81.3
MS.gene54277.t1 AT1G55600 44.156 77 42 1 246 322 288 363 8.12e-17 81.6
MS.gene54277.t1 AT1G64000 40.449 89 49 2 244 329 90 177 8.57e-17 78.2
MS.gene54277.t1 AT4G30935 51.613 62 29 1 263 324 329 389 9.20e-17 81.3
MS.gene54277.t1 AT5G41570 42.353 85 45 2 248 329 78 161 1.13e-16 77.4
MS.gene54277.t1 AT2G46130 42.857 84 44 2 249 329 11 93 1.89e-16 74.7
MS.gene54277.t1 AT1G18860 48.101 79 40 1 244 322 219 296 2.01e-16 80.5
MS.gene54277.t1 AT5G13080 46.053 76 39 2 261 336 63 136 2.38e-16 75.5
MS.gene54277.t1 AT1G80840 38.776 98 54 2 239 331 116 212 2.79e-16 78.6
MS.gene54277.t1 AT2G25000 44.595 74 41 0 250 323 88 161 3.43e-16 77.0
MS.gene54277.t1 AT2G25000 44.595 74 41 0 250 323 88 161 3.43e-16 77.0
MS.gene54277.t1 AT2G25000 44.595 74 41 0 250 323 110 183 6.55e-16 76.6
MS.gene54277.t1 AT2G30250 43.023 86 45 2 247 329 307 391 7.80e-16 78.2
MS.gene54277.t1 AT2G25000 44.595 74 41 0 250 323 131 204 8.80e-16 76.6
MS.gene54277.t1 AT3G01970 48.438 64 32 1 261 324 61 123 8.88e-16 73.9
MS.gene54277.t1 AT2G21900 54.386 57 25 1 266 322 110 165 1.05e-15 75.1
MS.gene54277.t1 AT5G64810 45.070 71 38 1 252 322 97 166 2.04e-15 74.3
MS.gene54277.t1 AT3G01080 57.895 57 22 2 266 322 206 260 9.20e-15 74.7
MS.gene54277.t1 AT5G43290 50.667 75 33 2 248 322 100 170 9.61e-15 73.9
MS.gene54277.t1 AT1G69310 46.512 86 37 4 240 322 120 199 1.24e-14 73.6
MS.gene54277.t1 AT4G11070 43.373 83 44 2 241 320 84 166 2.54e-13 69.7
MS.gene54277.t1 AT4G11070 43.373 83 44 2 241 320 116 198 2.87e-13 70.1
MS.gene54277.t1 AT1G69810 37.374 99 53 2 225 322 171 261 7.51e-13 69.3
MS.gene54277.t1 AT1G69810 37.374 99 53 2 225 322 113 203 8.69e-13 68.9
MS.gene54277.t1 AT3G56400 33.333 102 65 2 221 320 77 177 1.54e-12 67.8
MS.gene54277.t1 AT2G46130 39.286 84 43 2 249 329 11 89 1.86e-12 63.5
MS.gene54277.t1 AT5G24110 41.772 79 39 3 246 320 95 170 2.16e-12 67.4
MS.gene54277.t1 AT1G66560 49.153 59 28 1 264 320 102 160 2.30e-12 66.6
MS.gene54277.t1 AT2G46400 35.789 95 57 2 230 320 67 161 3.11e-12 66.6
MS.gene54277.t1 AT4G23810 33.929 112 71 2 212 320 104 215 4.77e-12 66.6
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.10e-11 65.5
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.10e-11 65.5
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.36e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.43e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.45e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.46e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.46e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.85e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 402 456 3.90e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.99e-11 65.1
MS.gene54277.t1 AT4G12020 50.877 57 26 2 266 322 469 523 4.94e-11 64.7
MS.gene54277.t1 AT2G40750 34.444 90 49 2 233 320 128 209 6.12e-11 63.2

Find 100 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCAACGTGTTTCCTTGC+TGG 0.192745 1.1:+10250054 None:intergenic
GAACACTCCGATGACGTTTC+AGG 0.264687 1.1:-10251551 MS.gene54277:CDS
TTTATGTCATCTGCTATTAC+TGG 0.300028 1.1:-10251701 MS.gene54277:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1.1:-10249950 MS.gene54277:CDS
GAGATAGCTGGTGTCGCCGC+TGG 0.336141 1.1:+10251632 None:intergenic
GAGCTCAAAACGACGTCGTT+TGG 0.354917 1.1:+10251800 None:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 1.1:+10252180 None:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 1.1:+10252026 None:intergenic
GGCGCGTGACGCACGGAGAT+TGG 0.371570 1.1:+10251875 None:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 1.1:+10251917 None:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 1.1:+10252131 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 1.1:+10250199 None:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 1.1:-10251683 MS.gene54277:CDS
CACTATTCAAGCTGCGATGC+AGG 0.421891 1.1:-10249977 MS.gene54277:CDS
GCGATGCAGGAGAACGCATC+CGG 0.423327 1.1:-10249964 MS.gene54277:CDS
GCTCAACGTGTTTCCTTGCT+GGG 0.423889 1.1:+10250055 None:intergenic
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 1.1:+10252036 None:intergenic
TTCATCACCACCGGTTCAAC+CGG 0.430740 1.1:-10251990 MS.gene54277:CDS
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 1.1:+10252125 None:intergenic
ATCTCTTTACTTAACCGAAC+CGG 0.452961 1.1:-10252055 MS.gene54277:CDS
TGAATCTGAACCGGTTGAAC+CGG 0.453562 1.1:+10251980 None:intergenic
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 1.1:+10252112 None:intergenic
GAAGATGAGGAGGAATGAAC+CGG 0.456286 1.1:+10252010 None:intergenic
ATGCTGATTGTAACGTATGA+AGG 0.457248 1.1:-10250012 MS.gene54277:CDS
GAGTACTCATGGCGGAAATA+CGG 0.458622 1.1:-10250244 MS.gene54277:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.458926 1.1:+10251944 None:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 1.1:-10251682 MS.gene54277:CDS
TTCTTTCATCAAAATGGCAG+TGG 0.466111 1.1:-10252239 None:intergenic
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 1.1:+10252126 None:intergenic
CAAAATGGCAGTGGAACTCA+TGG 0.473399 1.1:-10252230 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.473843 1.1:+10250261 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1.1:+10250018 None:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 1.1:-10252029 MS.gene54277:CDS
GATTCAATCCACTCCTTCAC+CGG 0.477697 1.1:-10251963 MS.gene54277:CDS
AACACTCCGATGACGTTTCA+GGG 0.483071 1.1:-10251550 MS.gene54277:CDS
CTCCTCATCTTCATCACCAC+CGG 0.490654 1.1:-10251999 MS.gene54277:CDS
GGAGAACGCATCCGGGATTG+TGG 0.492453 1.1:-10249956 MS.gene54277:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 1.1:+10252027 None:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 1.1:-10251695 MS.gene54277:CDS
TGAACCGGGCGTGACCGGTT+CGG 0.504434 1.1:+10252041 None:intergenic
AATCAGCATCGTTGGATCGT+CGG 0.504895 1.1:+10250026 None:intergenic
AGATAGCTGGTGTCGCCGCT+GGG 0.505573 1.1:+10251633 None:intergenic
TACAAGTGTAGTACAGTGAG+AGG 0.510799 1.1:-10250081 MS.gene54277:CDS
ATTGGCGCCGGTGACAGTGC+AGG 0.516466 1.1:+10251893 None:intergenic
CGTCTGTGCCGTCTAAGAAA+AGG 0.517771 1.1:-10251589 MS.gene54277:CDS
AAGAAAAGGTGTCATGATCA+TGG 0.525519 1.1:-10251575 MS.gene54277:CDS
AATCTCCGTGCGTCACGCGC+CGG 0.525708 1.1:-10251873 MS.gene54277:CDS
GCGGCGACACCAGCTATCTC+CGG 0.537481 1.1:-10251629 MS.gene54277:CDS
TCCGTCACCTGCACTGTCAC+CGG 0.537546 1.1:-10251900 MS.gene54277:CDS
GGAAGCGTTAACGGGAAACA+AGG 0.537738 1.1:-10251674 MS.gene54277:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1.1:-10249955 MS.gene54277:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1.1:+10250214 None:intergenic
ATACAAGAGGCTGCATCAGA+AGG 0.544462 1.1:-10252178 MS.gene54277:CDS
ATACGGTCAGAAACCGATCA+AGG 0.544971 1.1:-10250227 MS.gene54277:CDS
GTTGGTGTTTGAACCGGTGA+AGG 0.548366 1.1:+10251950 None:intergenic
TTCCGCCATGAGTACTCGTC+CGG 0.550529 1.1:+10250250 None:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 1.1:-10252045 MS.gene54277:CDS
GCTCGCCGGCGCGTGACGCA+CGG 0.552645 1.1:+10251868 None:intergenic
TGCTGATTGTAACGTATGAA+GGG 0.555435 1.1:-10250011 MS.gene54277:CDS
CGATGCAGGAGAACGCATCC+GGG 0.559528 1.1:-10249963 MS.gene54277:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1.1:+10249945 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1.1:-10250302 MS.gene54277:CDS
AAGATGAGGAGGAATGAACC+GGG 0.573874 1.1:+10252011 None:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.578616 1.1:+10251854 None:intergenic
GGAGTGGATTGAATCTGAAC+CGG 0.578656 1.1:+10251971 None:intergenic
TGACGCACGGAGATTGGCGC+CGG 0.582468 1.1:+10251881 None:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 1.1:+10252087 None:intergenic
CAGTGAGAGGGTGCCCAGCA+AGG 0.588389 1.1:-10250068 MS.gene54277:CDS
GACAGTGCAGGTGACGGAGA+AGG 0.589986 1.1:+10251905 None:intergenic
CGCCATGAGTACTCGTCCGG+TGG 0.590482 1.1:+10250253 None:intergenic
GCCGGTGACAGTGCAGGTGA+CGG 0.596080 1.1:+10251899 None:intergenic
AGTGTCATGCTGTGTGGTTG+CGG 0.596455 1.1:+10251836 None:intergenic
TACCACCGGACGAGTACTCA+TGG 0.597468 1.1:-10250255 MS.gene54277:CDS
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 1.1:-10252164 MS.gene54277:CDS
GCGGTCTTTGAACTTATCGC+CGG 0.605125 1.1:+10250283 None:intergenic
AAAATGGCAGTGGAACTCAT+GGG 0.610326 1.1:-10252229 MS.gene54277:CDS
TACGGTCAGAAACCGATCAA+GGG 0.612371 1.1:-10250226 MS.gene54277:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.613126 1.1:+10252000 None:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 1.1:-10252169 MS.gene54277:CDS
CGAGAATTCAAGCTCAACCA+TGG 0.618884 1.1:+10251763 None:intergenic
ATTCGACCCTGAAACGTCAT+CGG 0.623065 1.1:+10251544 None:intergenic
TGTTTGAACCGGTGAAGGAG+TGG 0.635060 1.1:+10251955 None:intergenic
ATCTGAACCGGTTGAACCGG+TGG 0.642716 1.1:+10251983 None:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 1.1:-10251520 MS.gene54277:intron
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 1.1:-10251759 MS.gene54277:CDS
GCTGATTGTAACGTATGAAG+GGG 0.650464 1.1:-10250010 MS.gene54277:CDS
AAATGGCAGTGGAACTCATG+GGG 0.650555 1.1:-10252228 MS.gene54277:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1.1:-10250210 MS.gene54277:intron
ACAAGTGTAGTACAGTGAGA+GGG 0.657147 1.1:-10250080 MS.gene54277:CDS
AACCGGTGGTGATGAAGATG+AGG 0.659341 1.1:+10251997 None:intergenic
AAAGACCGCCGATATACCAC+CGG 0.663684 1.1:-10250269 MS.gene54277:CDS
GCGACACCAGCTATCTCCGG+CGG 0.665830 1.1:-10251626 MS.gene54277:CDS
GACGGCACAGACGATAGCGG+CGG 0.685120 1.1:+10251599 None:intergenic
TTAGACGGCACAGACGATAG+CGG 0.693214 1.1:+10251596 None:intergenic
CTCGTCCGGTGGTATATCGG+CGG 0.695312 1.1:+10250264 None:intergenic
GAAGCGTTAACGGGAAACAA+GGG 0.708559 1.1:-10251673 MS.gene54277:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.710920 1.1:+10251830 None:intergenic
TGTACCTTCTCTTGACACAG+TGG 0.717082 1.1:+10251516 None:intergenic
AGATGAGGAGGAATGAACCG+GGG 0.738996 1.1:+10252012 None:intergenic
CACCGGACGAGTACTCATGG+CGG 0.773189 1.1:-10250252 MS.gene54277:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAGAAATAAAGAAA+GGG - chr1.1:10250996-10251015 MS.gene54277:intron 10.0%
!!! ATATATTTTTGATTTTTGAT+TGG - chr1.1:10250947-10250966 MS.gene54277:intron 10.0%
!!! ATTTTTTTTCAGAAAAAATA+GGG - chr1.1:10251833-10251852 MS.gene54277:CDS 10.0%
!! CATTAATTAGAAATAAAGAA+AGG - chr1.1:10250995-10251014 MS.gene54277:intron 15.0%
!!! GATTTTTTTTCAGAAAAAAT+AGG - chr1.1:10251832-10251851 MS.gene54277:CDS 15.0%
!!! TAACAATTTTGATATTTTGA+CGG - chr1.1:10250893-10250912 MS.gene54277:intron 15.0%
!! ATAATAGTCAACATAGTTAA+CGG + chr1.1:10252006-10252025 None:intergenic 20.0%
!! ATGAGTTCAAATTAAATTGA+GGG - chr1.1:10251354-10251373 MS.gene54277:intron 20.0%
!! CATAAGTCATAATCAAAAAT+GGG + chr1.1:10251337-10251356 None:intergenic 20.0%
!! GTCAAAATATCAAAATTGTT+AGG + chr1.1:10250894-10250913 None:intergenic 20.0%
!! TATGAGTTCAAATTAAATTG+AGG - chr1.1:10251353-10251372 MS.gene54277:intron 20.0%
!! TCATAAGTCATAATCAAAAA+TGG + chr1.1:10251338-10251357 None:intergenic 20.0%
!! TTTGTCATTATGTTAATCTA+CGG + chr1.1:10250800-10250819 None:intergenic 20.0%
!!! ATATCATTTGATTCAAGTTT+TGG - chr1.1:10251404-10251423 MS.gene54277:intron 20.0%
!!! CTTTTTGTTCATCTATTTTT+GGG + chr1.1:10249959-10249978 None:intergenic 20.0%
!!! TAATGTTTTAGTTACTAACT+TGG - chr1.1:10251671-10251690 MS.gene54277:CDS 20.0%
!!! TTATTCTTTCTTTTAATCAG+AGG - chr1.1:10252051-10252070 MS.gene54277:CDS 20.0%
! AACATTACTATGATCTTATG+CGG + chr1.1:10251658-10251677 None:intergenic 25.0%
! ATAAATCAACGTTAGAAAAC+AGG + chr1.1:10252035-10252054 None:intergenic 25.0%
! ATTCAAAGGTAAACTCTAAA+AGG + chr1.1:10250706-10250725 None:intergenic 25.0%
! TAGAAATAAAGAAAGGGAAA+AGG - chr1.1:10251002-10251021 MS.gene54277:intron 25.0%
! TGTGGTTAAAATGCTTTAAT+AGG - chr1.1:10251107-10251126 MS.gene54277:intron 25.0%
!! GCTTTTTGTTCATCTATTTT+TGG + chr1.1:10249960-10249979 None:intergenic 25.0%
!!! ATTTTGATATTTTGACGGTT+AGG - chr1.1:10250898-10250917 MS.gene54277:intron 25.0%
!!! GAGTTTTTTGAACTTAGAAA+CGG + chr1.1:10250084-10250103 None:intergenic 25.0%
!!! TTTTAGAGTTTACCTTTGAA+TGG - chr1.1:10250705-10250724 MS.gene54277:intron 25.0%
AAAACATTCATGGTCATTCA+TGG + chr1.1:10251633-10251652 None:intergenic 30.0%
AAACGTTAATGCATGTAATC+GGG + chr1.1:10250869-10250888 None:intergenic 30.0%
AAAGAAAGGGAAAAGGTTAA+TGG - chr1.1:10251009-10251028 MS.gene54277:intron 30.0%
AAGTTAAGTTAGACCTAGAT+TGG - chr1.1:10251588-10251607 MS.gene54277:CDS 30.0%
AGTATTTCCCATATTCCAAT+TGG + chr1.1:10251713-10251732 None:intergenic 30.0%
AGTCAAAGCAATTAAGTGAA+GGG + chr1.1:10251266-10251285 None:intergenic 30.0%
AGTTGAGTGTTTAATTGAGT+TGG + chr1.1:10250050-10250069 None:intergenic 30.0%
CAAACGTTAATGCATGTAAT+CGG + chr1.1:10250870-10250889 None:intergenic 30.0%
TGAACGAGTCAAACAAAAAA+GGG + chr1.1:10250975-10250994 None:intergenic 30.0%
TTTATGTCATCTGCTATTAC+TGG - chr1.1:10250458-10250477 MS.gene54277:intron 30.0%
!! ATCACATGTATGAGTTTTGA+TGG + chr1.1:10250826-10250845 None:intergenic 30.0%
!! CCTATTTTGAATTACTTGCA+GGG + chr1.1:10251452-10251471 None:intergenic 30.0%
!! TCCTATTTTGAATTACTTGC+AGG + chr1.1:10251453-10251472 None:intergenic 30.0%
AAAATAGGATCCCATGAGTT+AGG - chr1.1:10251464-10251483 MS.gene54277:intron 35.0%
AAATAGGATCCCATGAGTTA+GGG - chr1.1:10251465-10251484 MS.gene54277:intron 35.0%
ACTCCTATCCAATTGGAATA+TGG - chr1.1:10251702-10251721 MS.gene54277:CDS 35.0%
AGAGTTTACCTTTGAATGGA+AGG - chr1.1:10250709-10250728 MS.gene54277:intron 35.0%
ATCTCTTTACTTAACCGAAC+CGG - chr1.1:10250104-10250123 MS.gene54277:intron 35.0%
ATTGAGTGAAACGCAGATAA+AGG + chr1.1:10250677-10250696 None:intergenic 35.0%
ATTGTGTATAACTCTTACCG+TGG + chr1.1:10251969-10251988 None:intergenic 35.0%
CAGTCAAAGCAATTAAGTGA+AGG + chr1.1:10251267-10251286 None:intergenic 35.0%
CCCTGCAAGTAATTCAAAAT+AGG - chr1.1:10251449-10251468 MS.gene54277:intron 35.0%
CTCCTATCCAATTGGAATAT+GGG - chr1.1:10251703-10251722 MS.gene54277:CDS 35.0%
GAAAGTGACAAGACAACATA+GGG - chr1.1:10251143-10251162 MS.gene54277:intron 35.0%
GTGAACGAGTCAAACAAAAA+AGG + chr1.1:10250976-10250995 None:intergenic 35.0%
TATAACTCTTACCGTGGATA+TGG + chr1.1:10251963-10251982 None:intergenic 35.0%
TCAGAAAAAATAGGGTGAAG+AGG - chr1.1:10251841-10251860 MS.gene54277:CDS 35.0%
TGAAAGTGACAAGACAACAT+AGG - chr1.1:10251142-10251161 MS.gene54277:intron 35.0%
TGAACAAAAAGCCATACAAG+AGG - chr1.1:10249968-10249987 MS.gene54277:CDS 35.0%
TTATGCGGTCAAAACATTCA+TGG + chr1.1:10251643-10251662 None:intergenic 35.0%
TTCCCATATTCCAATTGGAT+AGG + chr1.1:10251708-10251727 None:intergenic 35.0%
! ACGTTTTACTCCTATCCAAT+TGG - chr1.1:10251695-10251714 MS.gene54277:CDS 35.0%
! ATGCTGATTGTAACGTATGA+AGG - chr1.1:10252147-10252166 MS.gene54277:CDS 35.0%
! ATGGTCGTTCGTTTAAAATC+GGG + chr1.1:10251614-10251633 None:intergenic 35.0%
! CATGGTCGTTCGTTTAAAAT+CGG + chr1.1:10251615-10251634 None:intergenic 35.0%
! TCATGACACCTTTTCTTAGA+CGG + chr1.1:10250581-10250600 None:intergenic 35.0%
! TGCTGATTGTAACGTATGAA+GGG - chr1.1:10252148-10252167 MS.gene54277:CDS 35.0%
! TGTTTCTGATGTCCAATATG+TGG - chr1.1:10250732-10250751 MS.gene54277:intron 35.0%
! TTTTGAACTTAGAAACGGTG+TGG + chr1.1:10250079-10250098 None:intergenic 35.0%
!! AAGAAAAGGTGTCATGATCA+TGG - chr1.1:10250584-10250603 MS.gene54277:intron 35.0%
!! ATTGAGTTGGTTGATGAGAA+AGG + chr1.1:10250037-10250056 None:intergenic 35.0%
!! TTGAGTTGGTTGATGAGAAA+GGG + chr1.1:10250036-10250055 None:intergenic 35.0%
!!! AAAGTGTTTTGGTAGAGACA+GGG + chr1.1:10250234-10250253 None:intergenic 35.0%
AAATACCAAACCCACAATCC+CGG + chr1.1:10252217-10252236 None:intergenic 40.0%
ACAAGTGTAGTACAGTGAGA+GGG - chr1.1:10252079-10252098 MS.gene54277:CDS 40.0%
ACTACGAAACCCTAACTCAT+GGG + chr1.1:10251477-10251496 None:intergenic 40.0%
ATCAGAAGGACTCAAAGGTA+TGG - chr1.1:10249995-10250014 MS.gene54277:CDS 40.0%
CAGAAACACCTTCCATTCAA+AGG + chr1.1:10250720-10250739 None:intergenic 40.0%
CTCAAACACGAAAAACTCCA+TGG - chr1.1:10250379-10250398 MS.gene54277:intron 40.0%
GCTGATTGTAACGTATGAAG+GGG - chr1.1:10252149-10252168 MS.gene54277:CDS 40.0%
TACAAGTGTAGTACAGTGAG+AGG - chr1.1:10252078-10252097 MS.gene54277:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG + chr1.1:10252144-10252163 None:intergenic 40.0%
TCATCTGCTATTACTGGTGA+TGG - chr1.1:10250464-10250483 MS.gene54277:intron 40.0%
TCGCAAACACTACCACATAT+TGG + chr1.1:10250747-10250766 None:intergenic 40.0%
! AAACGCAGATAAAGGAGTGT+AGG + chr1.1:10250669-10250688 None:intergenic 40.0%
! ACGTTTGGAGTCAACGATTT+CGG - chr1.1:10251078-10251097 MS.gene54277:intron 40.0%
! GTTTAAAATCGGGCCAATCT+AGG + chr1.1:10251604-10251623 None:intergenic 40.0%
! TTCGATTTTTCTCAACCCAG+CGG - chr1.1:10250511-10250530 MS.gene54277:intron 40.0%
!! AAAAATGGGTTAATGCGCTG+GGG + chr1.1:10251323-10251342 None:intergenic 40.0%
!! CAAAAATGGGTTAATGCGCT+GGG + chr1.1:10251324-10251343 None:intergenic 40.0%
!! GTTAGGTTGAAGTATGTGGA+CGG - chr1.1:10250915-10250934 MS.gene54277:intron 40.0%
!! TCAAAAATGGGTTAATGCGC+TGG + chr1.1:10251325-10251344 None:intergenic 40.0%
!! TTGGTTGATGAGAAAGGGTT+AGG + chr1.1:10250031-10250050 None:intergenic 40.0%
!!! GAAAGTGTTTTGGTAGAGAC+AGG + chr1.1:10250235-10250254 None:intergenic 40.0%
AAATCGAGTGTCATGCTGTG+TGG + chr1.1:10250332-10250351 None:intergenic 45.0%
AACACTCCGATGACGTTTCA+GGG - chr1.1:10250609-10250628 MS.gene54277:intron 45.0%
AAGATGAGGAGGAATGAACC+GGG + chr1.1:10250151-10250170 None:intergenic 45.0%
AATCAGCATCGTTGGATCGT+CGG + chr1.1:10252136-10252155 None:intergenic 45.0%
ACGTGAATTTGTCGTGTGAG+TGG - chr1.1:10251046-10251065 MS.gene54277:intron 45.0%
ATACAAGAGGCTGCATCAGA+AGG - chr1.1:10249981-10250000 MS.gene54277:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG - chr1.1:10251932-10251951 MS.gene54277:CDS 45.0%
ATTCGACCCTGAAACGTCAT+CGG + chr1.1:10250618-10250637 None:intergenic 45.0%
CGAGAATTCAAGCTCAACCA+TGG + chr1.1:10250399-10250418 None:intergenic 45.0%
CGTGAATTTGTCGTGTGAGT+GGG - chr1.1:10251047-10251066 MS.gene54277:intron 45.0%
GAACTTAGAAACGGTGTGGT+CGG + chr1.1:10250075-10250094 None:intergenic 45.0%
GAAGATGAGGAGGAATGAAC+CGG + chr1.1:10250152-10250171 None:intergenic 45.0%
GACTACGAAACCCTAACTCA+TGG + chr1.1:10251478-10251497 None:intergenic 45.0%
GATTCAATCCACTCCTTCAC+CGG - chr1.1:10250196-10250215 MS.gene54277:intron 45.0%
GGATATGGTGATCCCTTGAT+CGG + chr1.1:10251948-10251967 None:intergenic 45.0%
GGTTGAGCTTGAATTCTCGA+AGG - chr1.1:10250400-10250419 MS.gene54277:intron 45.0%
GTGAATTTGTCGTGTGAGTG+GGG - chr1.1:10251048-10251067 MS.gene54277:intron 45.0%
TACGGTCAGAAACCGATCAA+GGG - chr1.1:10251933-10251952 MS.gene54277:CDS 45.0%
TCAAGGGATCACCATATCCA+CGG - chr1.1:10251949-10251968 MS.gene54277:CDS 45.0%
TGAATCTGAACCGGTTGAAC+CGG + chr1.1:10250182-10250201 None:intergenic 45.0%
TGTACCTTCTCTTGACACAG+TGG + chr1.1:10250646-10250665 None:intergenic 45.0%
TTCTGATGCAGCCTCTTGTA+TGG + chr1.1:10249982-10250001 None:intergenic 45.0%
! GAAGCGTTAACGGGAAACAA+GGG - chr1.1:10250486-10250505 MS.gene54277:intron 45.0%
! GAGTACTCATGGCGGAAATA+CGG - chr1.1:10251915-10251934 MS.gene54277:CDS 45.0%
! TTTGGAGTCAACGATTTCGG+TGG - chr1.1:10251081-10251100 MS.gene54277:intron 45.0%
!! ACTGGTGATGGAAGCGTTAA+CGG - chr1.1:10250476-10250495 MS.gene54277:intron 45.0%
!! GACGGTTAGGTTGAAGTATG+TGG - chr1.1:10250911-10250930 MS.gene54277:intron 45.0%
!! GGAGTGGATTGAATCTGAAC+CGG + chr1.1:10250191-10250210 None:intergenic 45.0%
!!! GACGGAGAAGGAAAGTGTTT+TGG + chr1.1:10250245-10250264 None:intergenic 45.0%
!!! TGTTTTGGTAGAGACAGGGT+TGG + chr1.1:10250230-10250249 None:intergenic 45.0%
AAAGACCGCCGATATACCAC+CGG - chr1.1:10251890-10251909 MS.gene54277:CDS 50.0%
AGATGAGGAGGAATGAACCG+GGG + chr1.1:10250150-10250169 None:intergenic 50.0%
AGTGTCATGCTGTGTGGTTG+CGG + chr1.1:10250326-10250345 None:intergenic 50.0%
CACTATTCAAGCTGCGATGC+AGG - chr1.1:10252182-10252201 MS.gene54277:CDS 50.0%
CGTCTGTGCCGTCTAAGAAA+AGG - chr1.1:10250570-10250589 MS.gene54277:intron 50.0%
CTCCTCATCTTCATCACCAC+CGG - chr1.1:10250160-10250179 MS.gene54277:intron 50.0%
GAACACTCCGATGACGTTTC+AGG - chr1.1:10250608-10250627 MS.gene54277:intron 50.0%
GAGCTCAAAACGACGTCGTT+TGG + chr1.1:10250362-10250381 None:intergenic 50.0%
GCGGTCTTTGAACTTATCGC+CGG + chr1.1:10251879-10251898 None:intergenic 50.0%
GCTCAACGTGTTTCCTTGCT+GGG + chr1.1:10252107-10252126 None:intergenic 50.0%
GCTGCATCAGAAGGACTCAA+AGG - chr1.1:10249990-10250009 MS.gene54277:CDS 50.0%
GTACTCGTCCGGTGGTATAT+CGG + chr1.1:10251901-10251920 None:intergenic 50.0%
TGTTTGAACCGGTGAAGGAG+TGG + chr1.1:10250207-10250226 None:intergenic 50.0%
TTAGACGGCACAGACGATAG+CGG + chr1.1:10250566-10250585 None:intergenic 50.0%
TTTGTCGTGTGAGTGGGGTA+AGG - chr1.1:10251053-10251072 MS.gene54277:intron 50.0%
! AACCGGTGGTGATGAAGATG+AGG + chr1.1:10250165-10250184 None:intergenic 50.0%
! AGTGCCACTGTGTCAAGAGA+AGG - chr1.1:10250639-10250658 MS.gene54277:intron 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG - chr1.1:10251857-10251876 MS.gene54277:CDS 50.0%
! GTTGGTGTTTGAACCGGTGA+AGG + chr1.1:10250212-10250231 None:intergenic 50.0%
!! CTGGTGATGGAAGCGTTAAC+GGG - chr1.1:10250477-10250496 MS.gene54277:intron 50.0%
!! GACAGGGTTGGTGTTTGAAC+CGG + chr1.1:10250218-10250237 None:intergenic 50.0%
!! GGAAGCGTTAACGGGAAACA+AGG - chr1.1:10250485-10250504 MS.gene54277:intron 50.0%
!! TTCATCACCACCGGTTCAAC+CGG - chr1.1:10250169-10250188 MS.gene54277:intron 50.0%
ATCTGAACCGGTTGAACCGG+TGG + chr1.1:10250179-10250198 None:intergenic 55.0%
CGCTCAACGTGTTTCCTTGC+TGG + chr1.1:10252108-10252127 None:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG - chr1.1:10252204-10252223 MS.gene54277:CDS 55.0%
GAGTGGGGTAAGGCTACGTT+TGG - chr1.1:10251063-10251082 MS.gene54277:intron 55.0%
GGAGTCAACGATTTCGGTGG+TGG - chr1.1:10251084-10251103 MS.gene54277:intron 55.0%
TACCACCGGACGAGTACTCA+TGG - chr1.1:10251904-10251923 MS.gene54277:CDS 55.0%
TGCGGTTGAACAAAGCTCGC+CGG + chr1.1:10250308-10250327 None:intergenic 55.0%
TTCCGCCATGAGTACTCGTC+CGG + chr1.1:10251912-10251931 None:intergenic 55.0%
! ATGGGTTAATGCGCTGGGGT+GGG + chr1.1:10251319-10251338 None:intergenic 55.0%
! CAACGATTTCGGTGGTGGTG+TGG - chr1.1:10251089-10251108 MS.gene54277:intron 55.0%
! CGGTGGTGATGAAGATGAGG+AGG + chr1.1:10250162-10250181 None:intergenic 55.0%
!! AATGGGTTAATGCGCTGGGG+TGG + chr1.1:10251320-10251339 None:intergenic 55.0%
CACCGGACGAGTACTCATGG+CGG - chr1.1:10251907-10251926 MS.gene54277:CDS 60.0%
CGATGCAGGAGAACGCATCC+GGG - chr1.1:10252196-10252215 MS.gene54277:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG - chr1.1:10252209-10252228 MS.gene54277:CDS 60.0%
CTCGTCCGGTGGTATATCGG+CGG + chr1.1:10251898-10251917 None:intergenic 60.0%
GCGATGCAGGAGAACGCATC+CGG - chr1.1:10252195-10252214 MS.gene54277:CDS 60.0%
GGAGAACGCATCCGGGATTG+TGG - chr1.1:10252203-10252222 MS.gene54277:CDS 60.0%
TCCGTCACCTGCACTGTCAC+CGG - chr1.1:10250259-10250278 MS.gene54277:CDS 60.0%
TTAACCGAACCGGTCACGCC+CGG - chr1.1:10250114-10250133 MS.gene54277:intron 60.0%
! GGTTTTCCGCCGGAGATAGC+TGG + chr1.1:10250542-10250561 None:intergenic 60.0%
!! AGATAGCTGGTGTCGCCGCT+GGG + chr1.1:10250529-10250548 None:intergenic 60.0%
!! GACAGTGCAGGTGACGGAGA+AGG + chr1.1:10250257-10250276 None:intergenic 60.0%
AATCTCCGTGCGTCACGCGC+CGG - chr1.1:10250286-10250305 MS.gene54277:CDS 65.0%
CGCCATGAGTACTCGTCCGG+TGG + chr1.1:10251909-10251928 None:intergenic 65.0%
GCCGGTGACAGTGCAGGTGA+CGG + chr1.1:10250263-10250282 None:intergenic 65.0%
GCGACACCAGCTATCTCCGG+CGG - chr1.1:10250533-10250552 MS.gene54277:intron 65.0%
GCGGCGACACCAGCTATCTC+CGG - chr1.1:10250530-10250549 MS.gene54277:intron 65.0%
TGAACCGGGCGTGACCGGTT+CGG + chr1.1:10250121-10250140 None:intergenic 65.0%
TGACGCACGGAGATTGGCGC+CGG + chr1.1:10250281-10250300 None:intergenic 65.0%
! GACGGCACAGACGATAGCGG+CGG + chr1.1:10250563-10250582 None:intergenic 65.0%
!! ATTGGCGCCGGTGACAGTGC+AGG + chr1.1:10250269-10250288 None:intergenic 65.0%
!! CAGTGAGAGGGTGCCCAGCA+AGG - chr1.1:10252091-10252110 MS.gene54277:CDS 65.0%
!! CGATAGCGGCGGTTTTCCGC+CGG + chr1.1:10250552-10250571 None:intergenic 65.0%
!! GAGATAGCTGGTGTCGCCGC+TGG + chr1.1:10250530-10250549 None:intergenic 65.0%
AACCGGGGCGCGTCTGAACC+GGG + chr1.1:10250135-10250154 None:intergenic 70.0%
GAACCGGGGCGCGTCTGAAC+CGG + chr1.1:10250136-10250155 None:intergenic 70.0%
GCGTCTGAACCGGGCGTGAC+CGG + chr1.1:10250126-10250145 None:intergenic 70.0%
GGCGCGTGACGCACGGAGAT+TGG + chr1.1:10250287-10250306 None:intergenic 70.0%
! CGCCCGGTTCAGACGCGCCC+CGG - chr1.1:10250130-10250149 MS.gene54277:intron 80.0%
! GCTCGCCGGCGCGTGACGCA+CGG + chr1.1:10250294-10250313 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 10249933 10252248 10249933 ID=MS.gene54277
chr1.1 mRNA 10249933 10252248 10249933 ID=MS.gene54277.t1;Parent=MS.gene54277
chr1.1 exon 10251521 10252248 10251521 ID=MS.gene54277.t1.exon1;Parent=MS.gene54277.t1
chr1.1 CDS 10251521 10252248 10251521 ID=cds.MS.gene54277.t1;Parent=MS.gene54277.t1
chr1.1 exon 10250211 10250336 10250211 ID=MS.gene54277.t1.exon2;Parent=MS.gene54277.t1
chr1.1 CDS 10250211 10250336 10250211 ID=cds.MS.gene54277.t1;Parent=MS.gene54277.t1
chr1.1 exon 10249933 10250110 10249933 ID=MS.gene54277.t1.exon3;Parent=MS.gene54277.t1
chr1.1 CDS 10249933 10250110 10249933 ID=cds.MS.gene54277.t1;Parent=MS.gene54277.t1
Gene Sequence

>MS.gene54277

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAGCTATCTCCGGCGGAAAACCGCCGCTATCGTCTGTGCCGTCTAAGAAAAGGTGTCATGATCATGGTGAACACTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGGTACACCTACACTCCTTTATCTGCGTTTCACTCAATTATAATCCTTTTAGAGTTTACCTTTGAATGGAAGGTGTTTCTGATGTCCAATATGTGGTAGTGTTTGCGACAATCAATGATAATTTTTTTTTTTTGTACTCCGTAGATTAACATAATGACAAATAACCATCAAAACTCATACATGTGATAAAACAACAAAGACTCGTAACCCGATTACATGCATTAACGTTTGACCTAACAATTTTGATATTTTGACGGTTAGGTTGAAGTATGTGGACGGTCATGTACTATATATTTTTGATTTTTGATTGGAGCCCTTTTTTGTTTGACTCGTTCACATTAATTAGAAATAAAGAAAGGGAAAAGGTTAATGGTTTCTTAACGAATCACGTGAATTTGTCGTGTGAGTGGGGTAAGGCTACGTTTGGAGTCAACGATTTCGGTGGTGGTGTGGTTAAAATGCTTTAATAGGTAACAGTGTGCTTGAAAGTGACAAGACAACATAGGGTTCTGTTTTTGCTGTCTGAGAAAGAAAACACTAGAGAGAAATTCAAAAGTTCAAACAAAGTTAAAGTGATGTGAACTCTCTTTTTCTTTTTACAATTCCCTTCACTTAATTGCTTTGACTGTTGACGTTTTTTGTTAATTTATTAATGCACCCACCCCAGCGCATTAACCCATTTTTGATTATGACTTATGAGTTCAAATTAAATTGAGGGATAATAAGATTTTAATTTTTGTGTATCATATCATTTGATTCAAGTTTTGGAGTACTGTAGTCACTCTTTTGACCCTGCAAGTAATTCAAAATAGGATCCCATGAGTTAGGGTTTCGTAGTCACATAGTCAGAACATCGATGATCATTTAGATTGTAGATATGAAAATACAAATTTCAATTTTTATTTTACAATTCAATGTACAGAGCTTAGAAGTTAAGTTAGACCTAGATTGGCCCGATTTTAAACGAACGACCATGAATGACCATGAATGTTTTGACCGCATAAGATCATAGTAATGTTTTAGTTACTAACTTGGAACGTTTTACTCCTATCCAATTGGAATATGGGAAATACTTATGATTTATTTATTCATTATAATCATGATTGCAATATTGAATTCATTCATTATGATTATACTGTAATATTGAACAGAAGTAACAAGTTTCTTGAATTTGATTTTTTTTCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGGTAAGAGTTATACACAATCAATCTAATCTCGACCGTTAACTATGTTGACTATTATTAAAGACCTGTTTTCTAACGTTGATTTATTCTTTCTTTTAATCAGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA

Protein sequence

>MS.gene54277.t1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPAISGGKPPLSSVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST