AlfalfaGEDB | MS.gene54046

M. sativa cultivar XinJiangDaYe / MS.gene54046

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18 PF10533.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54046.t1	XP_013465713.1	91.5	343	26	2	1	343	1	340	3.00E-162	581.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54046.t1	Q9SV15	59.6	356	98	12	1	342	1	324	3.4e-93	343.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54046.t1	A0A072VCI7	91.5	343	26	2	1	343	1	340	2.2e-162	581.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene54046.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene54046	MS.gene54277	PPI
MS.gene54046	MS.gene021548	PPI
MS.gene54046	MS.gene86268	PPI
MS.gene54046	MS.gene021549	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54046.t1	MTR_1g009613	97.376	343	6	2	1	343	1	340	0.0	680
MS.gene54046.t1	MTR_0229s0060	96.694	242	5	2	1	242	1	239	6.89e-167	464
MS.gene54046.t1	MTR_4g127040	50.427	351	96	10	1	322	1	302	3.65e-88	268
MS.gene54046.t1	MTR_4g094908	39.899	396	127	13	1	343	1	338	7.72e-67	214
MS.gene54046.t1	MTR_3g108960	63.415	164	52	5	170	331	222	379	1.03e-61	202
MS.gene54046.t1	MTR_5g016610	58.394	137	50	2	208	343	141	271	1.21e-51	172
MS.gene54046.t1	MTR_0117s0040	65.823	79	27	0	244	322	53	131	1.99e-33	124
MS.gene54046.t1	MTR_2g032030	57.955	88	32	2	240	322	237	324	7.50e-29	115
MS.gene54046.t1	MTR_2g032030	57.955	88	32	2	240	322	237	324	7.58e-29	116
MS.gene54046.t1	MTR_7g079040	62.195	82	26	2	241	322	135	211	1.95e-28	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54046.t1	AT4G31550	59.551	356	98	12	1	342	1	324	1.80e-127	368
MS.gene54046.t1	AT4G31550	59.551	356	97	13	1	342	1	323	1.63e-126	365
MS.gene54046.t1	AT2G24570	59.659	352	100	14	1	342	1	320	1.20e-117	343
MS.gene54046.t1	AT4G31550	55.556	297	88	11	1	285	1	265	2.61e-90	271
MS.gene54046.t1	AT4G24240	43.296	358	151	13	1	324	1	340	5.07e-68	217
MS.gene54046.t1	AT2G23320	38.701	354	132	10	1	324	1	299	1.97e-62	202
MS.gene54046.t1	AT3G04670	37.500	344	160	11	11	323	1	320	2.89e-56	186
MS.gene54046.t1	AT2G30590	54.971	171	68	4	154	322	207	370	1.87e-55	186
MS.gene54046.t1	AT5G28650	36.232	345	163	12	11	323	1	320	4.14e-51	173
MS.gene54046.t1	AT2G23320	34.603	315	121	12	1	285	1	260	4.66e-34	126

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Find 102 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCAGTGGAACTCAT+GGG	0.610326	1.2:-10607733	MS.gene54046:CDS
AAAGACGGCCGATATACCAC+CGG	0.676381	1.2:-10605485	MS.gene54046:CDS
AAATACCAAACCCACAATCC+CGG	0.560277	1.2:+10605161	None:intergenic
AAATCGAGTGTCATGCTGTG+TGG	0.710920	1.2:+10607334	None:intergenic
AAATGGCAGTGGAACTCATG+GGG	0.650555	1.2:-10607732	MS.gene54046:CDS
AACACTCCGATGACGTTTCA+GGG	0.483071	1.2:-10607054	MS.gene54046:CDS
AACCGGGGCGCGTCTGAACC+GGG	0.500032	1.2:+10607531	None:intergenic
AACCGGTGGTGATGAAGATG+AGG	0.659341	1.2:+10607501	None:intergenic
AAGAAAAGGTGTCATGATCA+TGG	0.451475	1.2:-10607079	MS.gene54046:CDS
AAGATGAGGAGGAATGAACC+GGG	0.573874	1.2:+10607515	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTTAATGCATGTAATC+GGG	+	chr1.2:10606344-10606363	None:intergenic	30.0%
AAAGAAAGGGAAAAGGTTAA+TGG	-	chr1.2:10606471-10606490	MS.gene54046:intron	30.0%
AAAGTCAACATAATTAACGG+TGG	+	chr1.2:10607507-10607526	None:intergenic	30.0%
AAGTTAAGTTAGACCTAGAT+TGG	-	chr1.2:10607080-10607099	MS.gene54046:CDS	30.0%
ACTCTTATCCAATTGGAATA+TGG	-	chr1.2:10607177-10607196	MS.gene54046:CDS	30.0%
AGTATTTCCCATATTCCAAT+TGG	+	chr1.2:10607188-10607207	None:intergenic	30.0%
AGTCAAAGCAATTAAGTGAA+GGG	+	chr1.2:10606729-10606748	None:intergenic	30.0%
AGTTGAGTGTTTAATTGAGT+TGG	+	chr1.2:10605266-10605285	None:intergenic	30.0%
ATAGTGCACATTGCAAAAAT+TGG	-	chr1.2:10606248-10606267	MS.gene54046:intron	30.0%
CAAACGTTAATGCATGTAAT+CGG	+	chr1.2:10606345-10606364	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	10605149	10607752	10605149	ID=MS.gene54046
chr1.2	mRNA	10605149	10607752	10605149	ID=MS.gene54046.t1;Parent=MS.gene54046
chr1.2	exon	10607025	10607752	10607025	ID=MS.gene54046.t1.exon1;Parent=MS.gene54046.t1
chr1.2	CDS	10607025	10607752	10607025	ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1
chr1.2	exon	10605427	10605552	10605427	ID=MS.gene54046.t1.exon2;Parent=MS.gene54046.t1
chr1.2	CDS	10605427	10605552	10605427	ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1
chr1.2	exon	10605149	10605326	10605149	ID=MS.gene54046.t1.exon3;Parent=MS.gene54046.t1
chr1.2	CDS	10605149	10605326	10605149	ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1

Gene Sequence

>MS.gene54046

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCGCCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCGGCACTGTCACCGGCGCCAATCTCTGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAACTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGGGAACACTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGGTACACCTACACTCCTTTATCTGCGTTTCACTCAATTATAATCCTTTTAGAGTTTACCTTTGAATGGAAGGTGTTTCTGATGTCCAATATGTGGTAGTGTTTGCGACAATCAATGATAATTTTTTTTTTCTACTCCGTAGATTAACATAATGACAAATACTCCCTCCGTTTCAAAATACATGTCCAAATCAATAACTTCACATATGCCAATGCACAATTTTGACCGTTAATATCTTTAATTATCTAAATTAAAAAATTATAAAAATTTAATATTTTGAAAATATTTGTCGAGACAAATCAAACAACATCTTACATGCTAATATTTGTATTTATACATTAGTAAAAAAGTATGGTCAAAGTAAGTCAAGTGAATAGTGCACATTGCAAAAATTGGACATGTATTTTGAAACGGAGGGAGTAACAATCAAAACTCATACGAGTGATAAAACAACAAAGACTCGTAACCCGATTACATGCATTAACGTTTGACTGATATTTTTACCGGTTAGGTTAAAGTATGTGGACGGTCATGTATATATTTTTGATTTTTGATTGGAGCCTTTTTTGTTTGTCTCGTTCACATTAATTAGAAATAAAGAAAGGGAAAAGGTTAATGGTTTCTTAACGAATCACGTGAATTTGTCGTGTGAGTGGGGTAAGGCTACGTTTGGAGTCAACGATTTCGGTGGTGGTGTGGTTAAAATGCTTTAATAGGTAACAGTGTGTTTGAAAGTGACAAGACAACATAGGGTTCTGTTTTTGCTGTCTGAGAAAGAAAACACTAGAGAGAAATTCAAAAGTTCAAACAAAGTTAAAGTGATGTGAACTCTCTTTTTTCCTTTTTCAATTCCCTTCACTTAATTGCTTTGACTGTTGACTTTTTTTTGTTAATTTATTAATGCACCCACCCCCAGCGCATGTTAGCATAATAGTAACCCATTTTTTGATTATGAGTTCAAATTAAATTGAGGGATAATATAGGATTTTAATTTTTGTGGGAATACAAATTTGTGTGTACCATATCATTTGATAGTTTTGGAGTACTTTAGTCACTCCTTTGACTAAAAAGTAATTCGAAATAAGATCCATGAGTTAGGGTTTTGTTGTCACATAGTCGCTGTATCAATGATTATTTGATCAAGATTGTCGATACAAAAATATCAATTTCAATTTTTATTTTACAATTCAATGTACGGAGCTTAGAAGTTAAGTTAGACCTAGATTGGCCTGATTTTAAATGAACGACCACAAATGTTTTGACTGCTAAGACCGGAATGTTTTAGTTAACTTGGAACAATTTACTCTTATCCAATTGGAATATGGGAAATACTTTTTTTTTTGAGAGGAAATATGGGAAATACTTGTGATTTAATCATTATGATCATGATTGTAATATTGAATTTATTCAGCATGATTATACTAATACCCAACAGAAGTAACAAGTTTCTTGAATTTGATTTTTTTTTTACCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACGGCCGATATACCACCGGACGAGTACTCGTGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGGTAAGAGTTATACACAATCAATCCGATCTCCACCGTTAATTATGTTGACTTTTATTAAAGACTTGTTTTCTAATGTTGATTTATTCTTTCTTTTAATCAGAGGCTATTACAAGTGTAGCACTGTAAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA

Protein sequence

>MS.gene54046.t1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPTISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST