AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54046

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54046.t1 MTR_1g009613 97.376 343 6 2 1 343 1 340 0.0 680
MS.gene54046.t1 MTR_0229s0060 96.694 242 5 2 1 242 1 239 6.89e-167 464
MS.gene54046.t1 MTR_4g127040 50.427 351 96 10 1 322 1 302 3.65e-88 268
MS.gene54046.t1 MTR_4g094908 39.899 396 127 13 1 343 1 338 7.72e-67 214
MS.gene54046.t1 MTR_3g108960 63.415 164 52 5 170 331 222 379 1.03e-61 202
MS.gene54046.t1 MTR_5g016610 58.394 137 50 2 208 343 141 271 1.21e-51 172
MS.gene54046.t1 MTR_0117s0040 65.823 79 27 0 244 322 53 131 1.99e-33 124
MS.gene54046.t1 MTR_2g032030 57.955 88 32 2 240 322 237 324 7.50e-29 115
MS.gene54046.t1 MTR_2g032030 57.955 88 32 2 240 322 237 324 7.58e-29 116
MS.gene54046.t1 MTR_7g079040 62.195 82 26 2 241 322 135 211 1.95e-28 112
MS.gene54046.t1 MTR_2g016770 54.762 84 37 1 242 324 11 94 1.20e-27 108
MS.gene54046.t1 MTR_2g016770 55.422 83 36 1 243 324 4 86 3.09e-27 106
MS.gene54046.t1 MTR_8g087000 52.809 89 35 1 241 322 45 133 7.92e-27 106
MS.gene54046.t1 MTR_2g083870 55.556 90 34 2 241 324 50 139 2.01e-26 105
MS.gene54046.t1 MTR_7g109600 51.136 88 38 1 240 322 23 110 4.19e-26 105
MS.gene54046.t1 MTR_8g087000 52.874 87 34 1 243 322 48 134 5.31e-26 104
MS.gene54046.t1 MTR_8g028565 58.537 82 29 1 241 322 136 212 1.22e-25 105
MS.gene54046.t1 MTR_4g082580 50.505 99 37 3 240 327 242 339 7.78e-23 98.6
MS.gene54046.t1 MTR_5g042920 57.317 82 31 2 249 327 301 381 1.24e-22 98.6
MS.gene54046.t1 MTR_5g042920 50.725 69 31 3 257 324 142 208 5.66e-13 69.7
MS.gene54046.t1 MTR_3g031220 40.690 145 74 4 192 326 283 425 2.47e-22 98.2
MS.gene54046.t1 MTR_3g031220 50.000 68 32 2 266 333 199 264 2.27e-12 68.2
MS.gene54046.t1 MTR_2g024350 59.375 64 26 0 259 322 2 65 5.34e-22 93.2
MS.gene54046.t1 MTR_1g099600 50.000 80 39 1 244 322 163 242 5.85e-22 94.7
MS.gene54046.t1 MTR_5g094430 52.381 84 36 2 247 327 209 291 6.16e-22 96.3
MS.gene54046.t1 MTR_5g094430 52.381 84 36 2 247 327 231 313 6.54e-22 96.3
MS.gene54046.t1 MTR_5g094430 52.381 84 36 2 247 327 343 425 7.84e-22 96.7
MS.gene54046.t1 MTR_3g056100 49.474 95 39 3 241 327 239 332 3.62e-21 94.4
MS.gene54046.t1 MTR_3g056100 46.667 105 46 4 241 337 383 485 4.01e-21 94.7
MS.gene54046.t1 MTR_3g056100 49.474 95 39 3 241 327 226 319 4.09e-21 94.0
MS.gene54046.t1 MTR_3g056100 46.667 105 46 4 241 337 370 472 4.11e-21 94.7
MS.gene54046.t1 MTR_2g024380 62.295 61 23 0 262 322 248 308 4.15e-21 94.4
MS.gene54046.t1 MTR_7g109800 36.986 146 80 5 181 322 64 201 6.90e-21 91.7
MS.gene54046.t1 MTR_7g011820 53.012 83 35 2 248 327 390 471 7.74e-21 93.6
MS.gene54046.t1 MTR_7g011820 47.059 85 39 4 257 337 219 301 1.01e-13 72.4
MS.gene54046.t1 MTR_5g074400 56.098 82 32 2 249 327 401 481 9.67e-21 93.6
MS.gene54046.t1 MTR_5g074400 54.386 57 24 2 266 322 244 298 8.88e-12 66.6
MS.gene54046.t1 MTR_4g094588 44.706 85 46 1 252 336 165 248 1.29e-20 91.7
MS.gene54046.t1 MTR_4g013260 53.165 79 33 2 249 324 317 394 1.36e-20 92.8
MS.gene54046.t1 MTR_4g013260 50.877 57 27 1 266 322 185 240 7.47e-12 66.6
MS.gene54046.t1 MTR_3g009470 52.439 82 38 1 246 327 476 556 2.28e-20 92.8
MS.gene54046.t1 MTR_3g009470 54.386 57 24 2 266 322 281 335 2.41e-12 68.6
MS.gene54046.t1 MTR_8g098945 61.404 57 22 0 266 322 130 186 4.43e-20 89.0
MS.gene54046.t1 MTR_2g088000 47.561 82 43 0 249 330 333 414 8.14e-20 90.9
MS.gene54046.t1 MTR_7g080020 48.421 95 46 2 246 338 474 567 8.74e-20 90.9
MS.gene54046.t1 MTR_7g080020 50.000 68 29 3 255 322 273 335 5.16e-12 67.4
MS.gene54046.t1 MTR_7g071120 39.568 139 65 5 192 327 263 385 1.28e-19 90.1
MS.gene54046.t1 MTR_7g071120 54.386 57 24 2 266 322 167 221 7.56e-11 63.5
MS.gene54046.t1 MTR_7g080000 49.398 83 38 2 248 327 412 493 1.40e-19 90.1
MS.gene54046.t1 MTR_7g080000 54.386 57 24 2 266 322 235 289 5.06e-12 67.4
MS.gene54046.t1 MTR_7g079010 31.677 161 94 4 184 329 45 204 2.01e-19 85.9
MS.gene54046.t1 MTR_7g100510 51.471 68 32 1 257 324 353 419 2.30e-19 89.0
MS.gene54046.t1 MTR_7g100510 47.619 84 41 3 257 339 180 261 5.78e-16 79.0
MS.gene54046.t1 MTR_2g023930 48.649 74 38 0 249 322 289 362 3.79e-19 89.0
MS.gene54046.t1 MTR_7g110720 40.426 141 58 7 189 322 152 273 4.47e-19 88.2
MS.gene54046.t1 MTR_4g132430 47.368 76 40 0 249 324 111 186 1.12e-18 86.3
MS.gene54046.t1 MTR_5g091390 45.679 81 43 1 252 332 144 223 1.28e-18 85.5
MS.gene54046.t1 MTR_7g062220 38.261 115 64 4 210 322 71 180 1.38e-18 85.5
MS.gene54046.t1 MTR_3g090860 38.667 150 62 9 199 337 70 200 1.45e-18 85.9
MS.gene54046.t1 MTR_4g132430 48.649 74 38 0 249 322 245 318 1.68e-18 86.7
MS.gene54046.t1 MTR_7g110720 47.368 76 40 0 249 324 173 248 1.82e-18 86.3
MS.gene54046.t1 MTR_4g007060 53.846 65 30 0 258 322 121 185 2.33e-18 84.3
MS.gene54046.t1 MTR_3g053330 43.421 76 43 0 249 324 235 310 2.56e-18 85.9
MS.gene54046.t1 MTR_1g086790 43.529 85 45 2 240 322 131 214 2.66e-18 84.7
MS.gene54046.t1 MTR_3g106060 48.611 72 37 0 251 322 124 195 3.11e-18 84.0
MS.gene54046.t1 MTR_4g007060 53.846 65 30 0 258 322 155 219 3.41e-18 84.3
MS.gene54046.t1 MTR_1g015140 50.704 71 34 1 252 322 89 158 3.48e-18 80.9
MS.gene54046.t1 MTR_4g049790 53.731 67 31 0 266 332 313 379 3.97e-18 85.9
MS.gene54046.t1 MTR_2g105060 44.048 84 43 1 239 322 147 226 5.16e-18 84.0
MS.gene54046.t1 MTR_4g094412 39.796 98 40 1 244 322 194 291 6.11e-18 85.1
MS.gene54046.t1 MTR_2g105060 44.048 84 43 1 239 322 72 151 6.44e-18 82.0
MS.gene54046.t1 MTR_4g094412 39.796 98 40 1 244 322 203 300 7.62e-18 84.7
MS.gene54046.t1 MTR_7g009730 46.988 83 36 2 246 326 204 280 9.03e-18 84.7
MS.gene54046.t1 MTR_1g013760 52.632 57 27 0 266 322 141 197 9.72e-18 82.4
MS.gene54046.t1 MTR_2g033820 45.333 75 40 1 248 322 186 259 1.37e-17 83.2
MS.gene54046.t1 MTR_3g095080 45.783 83 41 2 251 330 127 208 1.49e-17 80.9
MS.gene54046.t1 MTR_8g092140 48.052 77 35 2 251 323 142 217 1.66e-17 80.9
MS.gene54046.t1 MTR_3g104750 47.436 78 37 2 248 322 84 160 1.75e-17 79.0
MS.gene54046.t1 MTR_3g095080 45.783 83 41 2 251 330 151 232 1.78e-17 80.9
MS.gene54046.t1 MTR_5g043880 43.902 82 45 1 241 322 100 180 2.00e-17 81.6
MS.gene54046.t1 MTR_8g007270 45.783 83 41 2 244 323 130 211 2.55e-17 80.1
MS.gene54046.t1 MTR_8g067635 45.833 96 46 2 242 337 329 418 3.12e-17 83.2
MS.gene54046.t1 MTR_8g092010 43.182 88 44 2 242 324 80 166 4.41e-17 78.6
MS.gene54046.t1 MTR_4g130900 57.895 57 23 1 266 322 360 415 5.12e-17 82.4
MS.gene54046.t1 MTR_4g107970 52.542 59 28 0 266 324 179 237 8.51e-17 81.6
MS.gene54046.t1 MTR_1g077780 45.783 83 44 1 246 328 43 124 9.92e-17 76.6
MS.gene54046.t1 MTR_4g107970 52.542 59 28 0 266 324 256 314 1.23e-16 81.3
MS.gene54046.t1 MTR_7g117200 43.529 85 44 2 240 320 91 175 1.43e-16 79.7
MS.gene54046.t1 MTR_7g028415 49.231 65 32 1 261 325 89 152 2.40e-16 76.3
MS.gene54046.t1 MTR_7g028710 49.231 65 32 1 261 325 89 152 2.40e-16 76.3
MS.gene54046.t1 MTR_8g069935 41.489 94 49 2 241 333 311 399 2.79e-16 80.1
MS.gene54046.t1 MTR_2g045360 52.542 59 28 0 266 324 212 270 3.36e-16 79.7
MS.gene54046.t1 MTR_4g122530 44.595 74 40 1 249 322 192 264 3.36e-16 79.3
MS.gene54046.t1 MTR_3g095040 45.000 80 43 1 243 322 96 174 3.83e-16 76.6
MS.gene54046.t1 MTR_5g097490 49.296 71 35 1 252 322 239 308 4.49e-16 79.0
MS.gene54046.t1 MTR_4g049760 50.746 67 33 0 266 332 291 357 4.65e-16 79.3
MS.gene54046.t1 MTR_8g067650 43.878 98 51 2 241 337 314 408 5.25e-16 79.3
MS.gene54046.t1 MTR_5g067680 43.182 88 44 3 236 320 175 259 9.21e-16 77.8
MS.gene54046.t1 MTR_1g013790 46.774 62 33 0 263 324 99 160 3.25e-15 74.7
MS.gene54046.t1 MTR_5g018380 60.345 58 20 2 265 322 123 177 4.54e-15 72.8
MS.gene54046.t1 MTR_8g027860 41.573 89 49 2 238 323 108 196 8.11e-15 74.7
MS.gene54046.t1 MTR_1g078260 58.065 62 24 2 262 322 244 304 1.46e-14 74.7
MS.gene54046.t1 MTR_6g086555 49.254 67 32 2 266 331 207 272 1.47e-14 74.7
MS.gene54046.t1 MTR_8g096730 39.706 68 40 1 262 329 67 133 5.86e-14 68.9
MS.gene54046.t1 MTR_6g053200 36.145 83 48 1 240 322 310 387 1.23e-13 72.0
MS.gene54046.t1 MTR_8g099350 36.538 104 52 4 228 320 89 189 1.72e-13 70.9
MS.gene54046.t1 MTR_3g031220 50.000 68 32 2 266 333 199 264 1.42e-12 68.6
MS.gene54046.t1 MTR_5g067700 42.857 84 39 3 239 320 87 163 1.61e-12 66.6
MS.gene54046.t1 MTR_3g009470 54.386 57 24 2 266 322 281 335 2.32e-12 68.2
MS.gene54046.t1 MTR_4g047580 42.169 83 46 1 248 330 266 346 8.49e-12 66.6
MS.gene54046.t1 MTR_2g075680 35.294 102 64 1 221 320 104 205 1.46e-11 64.7
MS.gene54046.t1 MTR_8g087000 63.158 38 14 0 285 322 35 72 2.51e-11 62.4
MS.gene54046.t1 MTR_3g093830 40.244 82 39 2 241 320 111 184 2.65e-11 63.9
MS.gene54046.t1 MTR_7g073430 36.842 95 56 3 229 320 86 179 4.64e-11 63.2
MS.gene54046.t1 MTR_2g075700 38.667 75 44 1 248 320 127 201 8.82e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54046.t1 AT4G31550 59.551 356 98 12 1 342 1 324 1.80e-127 368
MS.gene54046.t1 AT4G31550 59.551 356 97 13 1 342 1 323 1.63e-126 365
MS.gene54046.t1 AT2G24570 59.659 352 100 14 1 342 1 320 1.20e-117 343
MS.gene54046.t1 AT4G31550 55.556 297 88 11 1 285 1 265 2.61e-90 271
MS.gene54046.t1 AT4G24240 43.296 358 151 13 1 324 1 340 5.07e-68 217
MS.gene54046.t1 AT2G23320 38.701 354 132 10 1 324 1 299 1.97e-62 202
MS.gene54046.t1 AT3G04670 37.500 344 160 11 11 323 1 320 2.89e-56 186
MS.gene54046.t1 AT2G30590 54.971 171 68 4 154 322 207 370 1.87e-55 186
MS.gene54046.t1 AT5G28650 36.232 345 163 12 11 323 1 320 4.14e-51 173
MS.gene54046.t1 AT2G23320 34.603 315 121 12 1 285 1 260 4.66e-34 126
MS.gene54046.t1 AT3G04670 32.581 310 154 11 11 289 1 286 3.59e-31 119
MS.gene54046.t1 AT4G24240 54.237 118 40 4 170 285 196 301 2.61e-29 114
MS.gene54046.t1 AT2G34830 55.682 88 34 2 240 322 185 272 9.42e-29 115
MS.gene54046.t1 AT2G34830 55.682 88 34 2 240 322 194 281 1.03e-28 115
MS.gene54046.t1 AT1G29280 57.609 92 32 3 238 322 40 131 3.01e-28 110
MS.gene54046.t1 AT1G30650 54.545 88 35 2 240 322 187 274 2.59e-27 111
MS.gene54046.t1 AT4G01250 57.143 91 33 2 232 322 101 185 4.93e-26 105
MS.gene54046.t1 AT3G58710 55.682 88 33 2 241 322 40 127 1.16e-25 104
MS.gene54046.t1 AT3G58710 55.682 88 33 2 241 322 41 128 3.17e-25 103
MS.gene54046.t1 AT5G52830 54.878 82 33 1 241 322 145 222 1.48e-24 102
MS.gene54046.t1 AT2G38470 57.317 82 31 2 249 327 343 423 7.31e-23 99.8
MS.gene54046.t1 AT2G38470 54.386 57 24 2 266 322 185 239 8.43e-12 66.6
MS.gene54046.t1 AT5G45050 50.000 82 37 1 241 322 1160 1237 1.98e-21 96.3
MS.gene54046.t1 AT5G45050 50.000 82 37 1 241 322 1132 1209 1.99e-21 96.3
MS.gene54046.t1 AT1G13960 55.696 79 31 2 249 324 237 314 3.68e-21 93.6
MS.gene54046.t1 AT1G13960 54.839 62 25 3 262 322 72 131 8.42e-14 72.0
MS.gene54046.t1 AT2G03340 49.495 99 37 3 241 327 379 476 3.80e-21 94.7
MS.gene54046.t1 AT2G03340 50.746 67 30 3 259 324 243 307 5.83e-14 73.2
MS.gene54046.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.37e-21 90.1
MS.gene54046.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.37e-21 90.1
MS.gene54046.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.37e-21 90.1
MS.gene54046.t1 AT5G07100 57.534 73 30 1 252 324 128 199 5.37e-21 90.1
MS.gene54046.t1 AT1G13960 55.696 79 31 2 249 324 390 467 6.10e-21 94.0
MS.gene54046.t1 AT1G13960 54.839 62 25 3 262 322 225 284 8.49e-14 72.8
MS.gene54046.t1 AT2G04880 61.905 63 23 1 262 324 280 341 6.31e-21 93.6
MS.gene54046.t1 AT2G04880 61.905 63 23 1 262 324 304 365 7.94e-21 93.6
MS.gene54046.t1 AT4G23550 50.000 80 36 1 245 324 124 199 8.81e-21 91.7
MS.gene54046.t1 AT5G45050 50.000 82 37 1 241 322 1021 1098 8.82e-21 94.4
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.21e-20 92.0
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.21e-20 92.0
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.21e-20 92.0
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 188 263 1.21e-20 92.0
MS.gene54046.t1 AT5G49520 51.351 74 35 1 249 322 205 277 1.29e-20 92.4
MS.gene54046.t1 AT5G07100 46.739 92 48 1 233 324 202 292 1.59e-20 90.9
MS.gene54046.t1 AT1G29860 48.148 81 41 1 249 329 120 199 1.66e-20 90.5
MS.gene54046.t1 AT5G26170 51.389 72 34 1 252 323 100 170 2.17e-20 87.4
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 292 367 2.28e-20 92.0
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 364 439 2.31e-20 92.4
MS.gene54046.t1 AT4G26640 54.545 77 31 2 251 324 324 399 2.56e-20 92.0
MS.gene54046.t1 AT5G56270 53.659 82 37 1 246 327 468 548 3.71e-20 92.0
MS.gene54046.t1 AT5G56270 52.632 57 25 2 266 322 274 328 5.35e-11 64.3
MS.gene54046.t1 AT2G37260 42.742 124 63 3 201 324 212 327 5.96e-20 89.7
MS.gene54046.t1 AT2G37260 53.448 58 25 2 266 323 86 141 3.02e-12 67.4
MS.gene54046.t1 AT4G18170 46.154 91 48 1 234 324 141 230 7.16e-20 89.4
MS.gene54046.t1 AT2G37260 42.742 124 63 3 201 324 210 325 7.81e-20 89.4
MS.gene54046.t1 AT2G37260 53.448 58 25 2 266 323 84 139 3.37e-12 67.0
MS.gene54046.t1 AT2G37260 42.742 124 63 3 201 324 292 407 1.03e-19 90.1
MS.gene54046.t1 AT2G37260 53.448 58 25 2 266 323 166 221 2.86e-12 67.8
MS.gene54046.t1 AT2G40740 34.532 139 78 3 185 320 102 230 1.62e-19 87.8
MS.gene54046.t1 AT4G39410 47.126 87 42 2 240 323 195 280 1.95e-19 87.8
MS.gene54046.t1 AT2G40740 34.532 139 78 3 185 320 111 239 2.20e-19 87.4
MS.gene54046.t1 AT4G04450 50.000 74 37 0 249 322 182 255 2.72e-19 89.0
MS.gene54046.t1 AT4G26440 51.220 82 39 1 246 327 353 433 2.97e-19 89.4
MS.gene54046.t1 AT4G26440 53.448 58 25 2 266 323 179 234 1.04e-11 66.2
MS.gene54046.t1 AT4G04450 50.000 74 37 0 249 322 276 349 5.14e-19 88.2
MS.gene54046.t1 AT1G69310 48.837 86 39 3 240 322 120 203 6.04e-19 85.9
MS.gene54046.t1 AT1G69310 48.837 86 39 3 240 322 120 203 6.04e-19 85.9
MS.gene54046.t1 AT1G69310 48.837 86 39 3 240 322 120 203 6.04e-19 85.9
MS.gene54046.t1 AT2G47260 43.373 83 46 1 240 322 149 230 6.17e-19 86.7
MS.gene54046.t1 AT4G31800 46.575 73 39 0 250 322 96 168 1.11e-18 84.3
MS.gene54046.t1 AT3G01080 53.165 79 33 2 249 324 325 402 1.32e-18 87.0
MS.gene54046.t1 AT3G01080 56.452 62 24 3 262 322 201 260 1.52e-14 74.7
MS.gene54046.t1 AT3G01080 53.165 79 33 2 249 324 287 364 1.54e-18 86.7
MS.gene54046.t1 AT3G01080 56.452 62 24 3 262 322 163 222 1.89e-14 74.3
MS.gene54046.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.64e-18 87.0
MS.gene54046.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.64e-18 87.0
MS.gene54046.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.64e-18 87.0
MS.gene54046.t1 AT4G22070 48.649 74 38 0 249 322 281 354 1.64e-18 87.0
MS.gene54046.t1 AT1G62300 48.649 74 38 0 249 322 296 369 1.67e-18 87.0
MS.gene54046.t1 AT4G31800 46.575 73 39 0 250 322 161 233 1.71e-18 85.1
MS.gene54046.t1 AT5G46350 50.685 73 35 1 252 324 170 241 2.84e-18 84.7
MS.gene54046.t1 AT5G15130 47.561 82 42 1 243 324 164 244 3.63e-18 85.9
MS.gene54046.t1 AT5G15130 47.561 82 42 1 243 324 206 286 3.81e-18 85.9
MS.gene54046.t1 AT2G44745 41.414 99 54 2 227 322 104 201 1.03e-17 81.3
MS.gene54046.t1 AT3G62340 47.500 80 41 1 243 322 96 174 1.26e-17 82.0
MS.gene54046.t1 AT4G01720 48.649 74 38 0 249 322 223 296 1.87e-17 83.6
MS.gene54046.t1 AT5G45260 32.530 166 80 4 159 322 1132 1267 3.49e-17 83.6
MS.gene54046.t1 AT1G68150 56.140 57 25 0 266 322 236 292 7.80e-17 81.3
MS.gene54046.t1 AT1G55600 44.156 77 42 1 246 322 288 363 7.97e-17 81.6
MS.gene54046.t1 AT1G64000 40.449 89 49 2 244 329 90 177 9.01e-17 78.2
MS.gene54046.t1 AT4G30935 51.613 62 29 1 263 324 329 389 9.91e-17 81.3
MS.gene54046.t1 AT5G41570 42.353 85 45 2 248 329 78 161 1.16e-16 77.4
MS.gene54046.t1 AT2G46130 42.857 84 44 2 249 329 11 93 1.89e-16 74.7
MS.gene54046.t1 AT1G18860 48.101 79 40 1 244 322 219 296 2.19e-16 80.5
MS.gene54046.t1 AT5G13080 46.053 76 39 2 261 336 63 136 2.43e-16 75.5
MS.gene54046.t1 AT1G80840 38.776 98 54 2 239 331 116 212 2.69e-16 78.6
MS.gene54046.t1 AT2G25000 44.595 74 41 0 250 323 88 161 3.46e-16 77.0
MS.gene54046.t1 AT2G25000 44.595 74 41 0 250 323 88 161 3.46e-16 77.0
MS.gene54046.t1 AT2G25000 44.595 74 41 0 250 323 110 183 6.24e-16 77.0
MS.gene54046.t1 AT2G30250 43.023 86 45 2 247 329 307 391 8.10e-16 78.2
MS.gene54046.t1 AT2G25000 44.595 74 41 0 250 323 131 204 8.47e-16 77.0
MS.gene54046.t1 AT3G01970 48.438 64 32 1 261 324 61 123 8.88e-16 73.9
MS.gene54046.t1 AT2G21900 54.386 57 25 1 266 322 110 165 1.04e-15 75.1
MS.gene54046.t1 AT5G64810 45.070 71 38 1 252 322 97 166 2.04e-15 74.3
MS.gene54046.t1 AT3G01080 57.895 57 22 2 266 322 206 260 9.20e-15 74.7
MS.gene54046.t1 AT5G43290 50.667 75 33 2 248 322 100 170 9.43e-15 73.9
MS.gene54046.t1 AT1G69310 46.512 86 37 4 240 322 120 199 1.24e-14 73.6
MS.gene54046.t1 AT4G11070 43.373 83 44 2 241 320 84 166 2.49e-13 69.7
MS.gene54046.t1 AT4G11070 43.373 83 44 2 241 320 116 198 2.90e-13 70.1
MS.gene54046.t1 AT1G69810 37.374 99 53 2 225 322 171 261 7.65e-13 69.3
MS.gene54046.t1 AT1G69810 37.374 99 53 2 225 322 113 203 9.02e-13 68.6
MS.gene54046.t1 AT3G56400 32.743 113 71 3 212 320 66 177 1.21e-12 68.2
MS.gene54046.t1 AT2G46130 39.286 84 43 2 249 329 11 89 1.97e-12 63.5
MS.gene54046.t1 AT5G24110 41.772 79 39 3 246 320 95 170 2.20e-12 67.4
MS.gene54046.t1 AT1G66560 49.153 59 28 1 264 320 102 160 2.41e-12 66.6
MS.gene54046.t1 AT2G46400 35.789 95 57 2 230 320 67 161 3.14e-12 66.6
MS.gene54046.t1 AT4G23810 33.929 112 71 2 212 320 104 215 3.58e-12 67.0
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.02e-11 65.5
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.02e-11 65.5
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.34e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.34e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.36e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.39e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.43e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 402 456 3.83e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.92e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 3.99e-11 65.1
MS.gene54046.t1 AT4G12020 50.877 57 26 2 266 322 469 523 4.85e-11 64.7
MS.gene54046.t1 AT2G40750 34.444 90 49 2 233 320 128 209 6.12e-11 63.2

Find 102 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACGTGTTTCCTTGC+TGG 0.172147 1.2:+10605270 None:intergenic
GAACACTCCGATGACGTTTC+AGG 0.267127 1.2:-10607055 MS.gene54046:CDS
TTTATGTCATCTGCTATTAC+TGG 0.300028 1.2:-10607205 MS.gene54046:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1.2:-10605166 MS.gene54046:CDS
GAGATAGTTGGTGTCGCCGC+TGG 0.334561 1.2:+10607136 None:intergenic
TACAAGTGTAGCACTGTAAG+AGG 0.337436 1.2:-10605297 MS.gene54046:CDS
GAGCTCAAAACGACGTCGTT+TGG 0.354917 1.2:+10607304 None:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 1.2:+10607684 None:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 1.2:+10607530 None:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 1.2:+10607421 None:intergenic
GCTCCACGTGTTTCCTTGCT+GGG 0.389925 1.2:+10605271 None:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 1.2:+10607635 None:intergenic
TATAACTCTTACCGTGGATA+TGG 0.397980 1.2:+10605415 None:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 1.2:-10607187 MS.gene54046:CDS
GCGATGCAGGAGAACGCATC+CGG 0.423327 1.2:-10605180 MS.gene54046:CDS
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 1.2:+10607540 None:intergenic
GGCGCGTGACGCACAGAGAT+TGG 0.429652 1.2:+10607379 None:intergenic
TTCATCACCACCGGTTCAAC+CGG 0.430740 1.2:-10607494 MS.gene54046:CDS
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 1.2:+10607629 None:intergenic
TACTATTCAAGCTGCGATGC+AGG 0.438847 1.2:-10605193 MS.gene54046:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.443888 1.2:+10607448 None:intergenic
CGGCGGAAAACCGCCGCTAT+CGG 0.446685 1.2:-10607113 MS.gene54046:CDS
AAGAAAAGGTGTCATGATCA+TGG 0.451475 1.2:-10607079 MS.gene54046:CDS
ATCTCTTTACTTAACCGAAC+CGG 0.452961 1.2:-10607559 MS.gene54046:CDS
TGAATCTGAACCGGTTGAAC+CGG 0.453562 1.2:+10607484 None:intergenic
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 1.2:+10607616 None:intergenic
GAAGATGAGGAGGAATGAAC+CGG 0.456286 1.2:+10607514 None:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 1.2:-10607186 MS.gene54046:CDS
TTCTTTCATCAAAATGGCAG+TGG 0.466111 1.2:-10607743 None:intergenic
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 1.2:+10607630 None:intergenic
CAAAATGGCAGTGGAACTCA+TGG 0.473399 1.2:-10607734 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1.2:+10605234 None:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 1.2:-10607533 MS.gene54046:CDS
GATTCAATCCACTCCTTCGC+CGG 0.477754 1.2:-10607467 MS.gene54046:CDS
AACACTCCGATGACGTTTCA+GGG 0.483071 1.2:-10607054 MS.gene54046:CDS
ACACTTTCCTTCTCCGTCAC+CGG 0.483385 1.2:-10607416 MS.gene54046:CDS
CTCCTCATCTTCATCACCAC+CGG 0.490654 1.2:-10607503 MS.gene54046:CDS
GGAGAACGCATCCGGGATTG+TGG 0.492453 1.2:-10605172 MS.gene54046:CDS
GAGTACTCGTGGCGGAAATA+CGG 0.498267 1.2:-10605460 MS.gene54046:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 1.2:+10607531 None:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 1.2:-10607199 MS.gene54046:CDS
GTACTCGTCCGGTGGTATAT+CGG 0.501607 1.2:+10605477 None:intergenic
TGAACCGGGCGTGACCGGTT+CGG 0.504434 1.2:+10607545 None:intergenic
TCCGTCACCGGCACTGTCAC+CGG 0.506191 1.2:-10607404 MS.gene54046:CDS
AGATAGTTGGTGTCGCCGCT+GGG 0.508055 1.2:+10607137 None:intergenic
AGAAAAGGTGTCATGATCAT+GGG 0.508968 1.2:-10607078 MS.gene54046:CDS
CGGCGGTGCCGTCTAAGAAA+AGG 0.512268 1.2:-10607093 MS.gene54046:CDS
ATGCTGATTGTAACGTATGA+AGG 0.520363 1.2:-10605228 MS.gene54046:CDS
CGGAAAACCGCCGCTATCGG+CGG 0.520458 1.2:-10607110 MS.gene54046:CDS
AATCTCTGTGCGTCACGCGC+CGG 0.526961 1.2:-10607377 MS.gene54046:CDS
GGAGTGGATTGAATCTGAAC+CGG 0.533343 1.2:+10607475 None:intergenic
GGAAGCGTTAACGGGAAACA+AGG 0.537738 1.2:-10607178 MS.gene54046:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1.2:-10605171 MS.gene54046:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1.2:+10605430 None:intergenic
ATACAAGAGGCTGCATCAGA+AGG 0.544462 1.2:-10607682 MS.gene54046:CDS
ATACGGTCAGAAACCGATCA+AGG 0.544971 1.2:-10605443 MS.gene54046:CDS
GCCGGTGACAGTGCCGGTGA+CGG 0.547798 1.2:+10607403 None:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 1.2:-10607549 MS.gene54046:CDS
ATTGGCGCCGGTGACAGTGC+CGG 0.551205 1.2:+10607397 None:intergenic
GTTGGTGTTTGAACCGGCGA+AGG 0.551537 1.2:+10607454 None:intergenic
GCGGCGACACCAACTATCTC+CGG 0.553417 1.2:-10607133 MS.gene54046:CDS
GACAGTGCCGGTGACGGAGA+AGG 0.553869 1.2:+10607409 None:intergenic
CGATGCAGGAGAACGCATCC+GGG 0.559528 1.2:-10605179 MS.gene54046:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1.2:+10605161 None:intergenic
TTCCGCCACGAGTACTCGTC+CGG 0.561775 1.2:+10605466 None:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1.2:-10605518 MS.gene54046:CDS
GACGGCACCGCCGATAGCGG+CGG 0.571524 1.2:+10607103 None:intergenic
TTAGACGGCACCGCCGATAG+CGG 0.572147 1.2:+10607100 None:intergenic
AAGATGAGGAGGAATGAACC+GGG 0.573874 1.2:+10607515 None:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.578616 1.2:+10607358 None:intergenic
GCCGTCTTTGAACTTATCGC+CGG 0.583939 1.2:+10605499 None:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 1.2:+10607591 None:intergenic
TGTTTGAACCGGCGAAGGAG+TGG 0.588183 1.2:+10607459 None:intergenic
AGTGTCATGCTGTGTGGTTG+CGG 0.596455 1.2:+10607340 None:intergenic
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 1.2:-10607668 MS.gene54046:CDS
CTGTAAGAGGGTGCCCAGCA+AGG 0.607648 1.2:-10605284 MS.gene54046:CDS
AAAATGGCAGTGGAACTCAT+GGG 0.610326 1.2:-10607733 MS.gene54046:CDS
TACGGTCAGAAACCGATCAA+GGG 0.612371 1.2:-10605442 MS.gene54046:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.613126 1.2:+10607504 None:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 1.2:-10607673 MS.gene54046:CDS
CGAGAATTCAAGCTCAACCA+TGG 0.618884 1.2:+10607267 None:intergenic
ATTCGACCCTGAAACGTCAT+CGG 0.623065 1.2:+10607048 None:intergenic
TGACGCACAGAGATTGGCGC+CGG 0.628257 1.2:+10607385 None:intergenic
GAAAAGGTGTCATGATCATG+GGG 0.632050 1.2:-10607077 MS.gene54046:CDS
ACAAGTGTAGCACTGTAAGA+GGG 0.637119 1.2:-10605296 MS.gene54046:CDS
CGCCACGAGTACTCGTCCGG+TGG 0.638685 1.2:+10605469 None:intergenic
ATCTGAACCGGTTGAACCGG+TGG 0.642716 1.2:+10607487 None:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 1.2:-10607024 MS.gene54046:intron
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 1.2:-10607263 MS.gene54046:CDS
ACCGGCGATAAGTTCAAAGA+CGG 0.648876 1.2:-10605500 MS.gene54046:CDS
AAATGGCAGTGGAACTCATG+GGG 0.650555 1.2:-10607732 MS.gene54046:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1.2:-10605426 MS.gene54046:intron
AACCGGTGGTGATGAAGATG+AGG 0.659341 1.2:+10607501 None:intergenic
GTGCCCAGCAAGGAAACACG+TGG 0.663662 1.2:-10605274 MS.gene54046:CDS
AAAGACGGCCGATATACCAC+CGG 0.676381 1.2:-10605485 MS.gene54046:CDS
TACCACCGGACGAGTACTCG+TGG 0.691070 1.2:-10605471 MS.gene54046:CDS
GCGACACCAACTATCTCCGG+CGG 0.701511 1.2:-10607130 MS.gene54046:CDS
GAAGCGTTAACGGGAAACAA+GGG 0.708559 1.2:-10607177 MS.gene54046:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.710920 1.2:+10607334 None:intergenic
TGTACCTTCTCTTGACACAG+TGG 0.717082 1.2:+10607020 None:intergenic
CACCGGACGAGTACTCGTGG+CGG 0.727156 1.2:-10605468 MS.gene54046:CDS
AGATGAGGAGGAATGAACCG+GGG 0.738996 1.2:+10607516 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAGAAATAAAGAAA+GGG - chr1.2:10606458-10606477 MS.gene54046:intron 10.0%
!! TAGATAATTAAAGATATTAA+CGG + chr1.2:10606103-10606122 None:intergenic 10.0%
!!! ATATATTTTTGATTTTTGAT+TGG - chr1.2:10606410-10606429 MS.gene54046:intron 10.0%
!! ATAAAAGTCAACATAATTAA+CGG + chr1.2:10607510-10607529 None:intergenic 15.0%
!! CATTAATTAGAAATAAAGAA+AGG - chr1.2:10606457-10606476 MS.gene54046:intron 15.0%
!! TATACATTAGTAAAAAAGTA+TGG - chr1.2:10606207-10606226 MS.gene54046:intron 15.0%
!!! ATATAGGATTTTAATTTTTG+TGG - chr1.2:10606852-10606871 MS.gene54046:intron 15.0%
!!! TATAGGATTTTAATTTTTGT+GGG - chr1.2:10606853-10606872 MS.gene54046:intron 15.0%
!!! TTATTTTACAATTCAATGTA+CGG - chr1.2:10607050-10607069 MS.gene54046:CDS 15.0%
!!! TTTTTTTACCAGAAAAAATA+GGG - chr1.2:10607337-10607356 MS.gene54046:CDS 15.0%
!!! TTTTTTTTACCAGAAAAAAT+AGG - chr1.2:10607336-10607355 MS.gene54046:CDS 15.0%
!! ATGAGTTCAAATTAAATTGA+GGG - chr1.2:10606826-10606845 MS.gene54046:intron 20.0%
!! ATTAAATTGAGGGATAATAT+AGG - chr1.2:10606836-10606855 MS.gene54046:intron 20.0%
!! TATGAGTTCAAATTAAATTG+AGG - chr1.2:10606825-10606844 MS.gene54046:intron 20.0%
!! TGAACTCATAATCAAAAAAT+GGG + chr1.2:10606815-10606834 None:intergenic 20.0%
!! TTGAACTCATAATCAAAAAA+TGG + chr1.2:10606816-10606835 None:intergenic 20.0%
!! TTTGTCATTATGTTAATCTA+CGG + chr1.2:10606014-10606033 None:intergenic 20.0%
!!! CTTTTTGTTCATCTATTTTT+GGG + chr1.2:10605175-10605194 None:intergenic 20.0%
!!! GAAATACTTTTTTTTTTGAG+AGG - chr1.2:10607200-10607219 MS.gene54046:CDS 20.0%
!!! TTATTCTTTCTTTTAATCAG+AGG - chr1.2:10607555-10607574 MS.gene54046:CDS 20.0%
!!! TTTTTTTTGAGAGGAAATAT+GGG - chr1.2:10607209-10607228 MS.gene54046:CDS 20.0%
!!! TTTTTTTTTGAGAGGAAATA+TGG - chr1.2:10607208-10607227 MS.gene54046:CDS 20.0%
! ACAATTTACTCTTATCCAAT+TGG - chr1.2:10607170-10607189 MS.gene54046:CDS 25.0%
! ATTCAAAGGTAAACTCTAAA+AGG + chr1.2:10605922-10605941 None:intergenic 25.0%
! TAGAAATAAAGAAAGGGAAA+AGG - chr1.2:10606464-10606483 MS.gene54046:intron 25.0%
! TCCAAAACTATCAAATGATA+TGG + chr1.2:10606897-10606916 None:intergenic 25.0%
! TGTGGTTAAAATGCTTTAAT+AGG - chr1.2:10606569-10606588 MS.gene54046:intron 25.0%
!! CATATGTGAAGTTATTGATT+TGG + chr1.2:10606063-10606082 None:intergenic 25.0%
!! GCTTTTTGTTCATCTATTTT+TGG + chr1.2:10605176-10605195 None:intergenic 25.0%
!!! ACCATATCATTTGATAGTTT+TGG - chr1.2:10606893-10606912 MS.gene54046:intron 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - chr1.2:10606266-10606285 MS.gene54046:intron 25.0%
!!! GAGTTTTTTGAACTTAGAAA+CGG + chr1.2:10605300-10605319 None:intergenic 25.0%
!!! TCGAATTACTTTTTAGTCAA+AGG + chr1.2:10606934-10606953 None:intergenic 25.0%
!!! TTTGGACATGTATTTTGAAA+CGG + chr1.2:10606045-10606064 None:intergenic 25.0%
!!! TTTTAGAGTTTACCTTTGAA+TGG - chr1.2:10605921-10605940 MS.gene54046:intron 25.0%
AAACGTTAATGCATGTAATC+GGG + chr1.2:10606344-10606363 None:intergenic 30.0%
AAAGAAAGGGAAAAGGTTAA+TGG - chr1.2:10606471-10606490 MS.gene54046:intron 30.0%
AAAGTCAACATAATTAACGG+TGG + chr1.2:10607507-10607526 None:intergenic 30.0%
AAGTTAAGTTAGACCTAGAT+TGG - chr1.2:10607080-10607099 MS.gene54046:CDS 30.0%
ACTCTTATCCAATTGGAATA+TGG - chr1.2:10607177-10607196 MS.gene54046:CDS 30.0%
AGTATTTCCCATATTCCAAT+TGG + chr1.2:10607188-10607207 None:intergenic 30.0%
AGTCAAAGCAATTAAGTGAA+GGG + chr1.2:10606729-10606748 None:intergenic 30.0%
AGTTGAGTGTTTAATTGAGT+TGG + chr1.2:10605266-10605285 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG - chr1.2:10606248-10606267 MS.gene54046:intron 30.0%
CAAACGTTAATGCATGTAAT+CGG + chr1.2:10606345-10606364 None:intergenic 30.0%
CCAAGTTAACTAAAACATTC+CGG + chr1.2:10607149-10607168 None:intergenic 30.0%
CTCTTATCCAATTGGAATAT+GGG - chr1.2:10607178-10607197 MS.gene54046:CDS 30.0%
GAAATAAGATCCATGAGTTA+GGG - chr1.2:10606952-10606971 MS.gene54046:intron 30.0%
TAAGTGAAGGGAATTGAAAA+AGG + chr1.2:10606717-10606736 None:intergenic 30.0%
TTTATGTCATCTGCTATTAC+TGG - chr1.2:10605674-10605693 MS.gene54046:intron 30.0%
! ATTTAAAATCAGGCCAATCT+AGG + chr1.2:10607096-10607115 None:intergenic 30.0%
!! AAGAAACTTGTTACTTCTGT+TGG + chr1.2:10607306-10607325 None:intergenic 30.0%
!! AGAAACTTGTTACTTCTGTT+GGG + chr1.2:10607305-10607324 None:intergenic 30.0%
!! CGTTTGACTGATATTTTTAC+CGG - chr1.2:10606359-10606378 MS.gene54046:intron 30.0%
ACATAATTAACGGTGGAGAT+CGG + chr1.2:10607500-10607519 None:intergenic 35.0%
AGAGTTTACCTTTGAATGGA+AGG - chr1.2:10605925-10605944 MS.gene54046:intron 35.0%
ATCTCTTTACTTAACCGAAC+CGG - chr1.2:10605320-10605339 MS.gene54046:intron 35.0%
ATTGAGTGAAACGCAGATAA+AGG + chr1.2:10605893-10605912 None:intergenic 35.0%
ATTGTGTATAACTCTTACCG+TGG + chr1.2:10607473-10607492 None:intergenic 35.0%
CAGTCAAAGCAATTAAGTGA+AGG + chr1.2:10606730-10606749 None:intergenic 35.0%
CGAAATAAGATCCATGAGTT+AGG - chr1.2:10606951-10606970 MS.gene54046:intron 35.0%
CTTAGCAGTCAAAACATTTG+TGG + chr1.2:10607125-10607144 None:intergenic 35.0%
GAAAGTGACAAGACAACATA+GGG - chr1.2:10606605-10606624 MS.gene54046:intron 35.0%
GTGAACGAGACAAACAAAAA+AGG + chr1.2:10606438-10606457 None:intergenic 35.0%
GTTAGGTTAAAGTATGTGGA+CGG - chr1.2:10606381-10606400 MS.gene54046:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr1.2:10606086-10606105 None:intergenic 35.0%
TATAACTCTTACCGTGGATA+TGG + chr1.2:10607467-10607486 None:intergenic 35.0%
TCCACATACTTTAACCTAAC+CGG + chr1.2:10606381-10606400 None:intergenic 35.0%
TGAAAGTGACAAGACAACAT+AGG - chr1.2:10606604-10606623 MS.gene54046:intron 35.0%
TGAACAAAAAGCCATACAAG+AGG - chr1.2:10605184-10605203 MS.gene54046:CDS 35.0%
! ATGCTGATTGTAACGTATGA+AGG - chr1.2:10607651-10607670 MS.gene54046:CDS 35.0%
! GTGGTCGTTCATTTAAAATC+AGG + chr1.2:10607106-10607125 None:intergenic 35.0%
! TCATGACACCTTTTCTTAGA+CGG + chr1.2:10605797-10605816 None:intergenic 35.0%
! TGTTTCTGATGTCCAATATG+TGG - chr1.2:10605948-10605967 MS.gene54046:intron 35.0%
! TTTTGAACTTAGAAACGGTG+TGG + chr1.2:10605295-10605314 None:intergenic 35.0%
!! AAGAAAAGGTGTCATGATCA+TGG - chr1.2:10605800-10605819 MS.gene54046:intron 35.0%
!! AGAAAAGGTGTCATGATCAT+GGG - chr1.2:10605801-10605820 MS.gene54046:intron 35.0%
!! ATTGAGTTGGTTGATGAGAA+AGG + chr1.2:10605253-10605272 None:intergenic 35.0%
!! GACTGATATTTTTACCGGTT+AGG - chr1.2:10606364-10606383 MS.gene54046:intron 35.0%
!! TTGAGTTGGTTGATGAGAAA+GGG + chr1.2:10605252-10605271 None:intergenic 35.0%
!!! AAAGTGTTTTGGTAGAGACA+GGG + chr1.2:10605450-10605469 None:intergenic 35.0%
!!! AATGTTTTGACTGCTAAGAC+CGG - chr1.2:10607127-10607146 MS.gene54046:CDS 35.0%
!!! CCGGAATGTTTTAGTTAACT+TGG - chr1.2:10607146-10607165 MS.gene54046:CDS 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr1.2:10606270-10606289 MS.gene54046:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr1.2:10606289-10606270 None:intergenic 35.0%
AAATACCAAACCCACAATCC+CGG + chr1.2:10607721-10607740 None:intergenic 40.0%
ACAAGTGTAGCACTGTAAGA+GGG - chr1.2:10607583-10607602 MS.gene54046:CDS 40.0%
ACCGGTTAGGTTAAAGTATG+TGG - chr1.2:10606377-10606396 MS.gene54046:intron 40.0%
ACTATTATGCTAACATGCGC+TGG + chr1.2:10606790-10606809 None:intergenic 40.0%
ATCAGAAGGACTCAAAGGTA+TGG - chr1.2:10605211-10605230 MS.gene54046:CDS 40.0%
CAGAAACACCTTCCATTCAA+AGG + chr1.2:10605936-10605955 None:intergenic 40.0%
CCAGAAAAAATAGGGTGAAG+AGG - chr1.2:10607345-10607364 MS.gene54046:CDS 40.0%
CTATTATGCTAACATGCGCT+GGG + chr1.2:10606789-10606808 None:intergenic 40.0%
CTCAAACACGAAAAACTCCA+TGG - chr1.2:10605595-10605614 MS.gene54046:intron 40.0%
GACAACAAAACCCTAACTCA+TGG + chr1.2:10606965-10606984 None:intergenic 40.0%
TACAAGTGTAGCACTGTAAG+AGG - chr1.2:10607582-10607601 MS.gene54046:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG + chr1.2:10607648-10607667 None:intergenic 40.0%
TATTATGCTAACATGCGCTG+GGG + chr1.2:10606788-10606807 None:intergenic 40.0%
TCATCTGCTATTACTGGTGA+TGG - chr1.2:10605680-10605699 MS.gene54046:intron 40.0%
TCGCAAACACTACCACATAT+TGG + chr1.2:10605963-10605982 None:intergenic 40.0%
! AAACGCAGATAAAGGAGTGT+AGG + chr1.2:10605885-10605904 None:intergenic 40.0%
! ACGTTTGGAGTCAACGATTT+CGG - chr1.2:10606540-10606559 MS.gene54046:intron 40.0%
! TTCGATTTTTCTCAACCCAG+CGG - chr1.2:10605727-10605746 MS.gene54046:intron 40.0%
!! GAAAAGGTGTCATGATCATG+GGG - chr1.2:10605802-10605821 MS.gene54046:intron 40.0%
!! TTGGTTGATGAGAAAGGGTT+AGG + chr1.2:10605247-10605266 None:intergenic 40.0%
!!! CCTCTTCACCCTATTTTTTC+TGG + chr1.2:10607348-10607367 None:intergenic 40.0%
!!! GAAAGTGTTTTGGTAGAGAC+AGG + chr1.2:10605451-10605470 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr1.2:10606269-10606288 MS.gene54046:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr1.2:10606288-10606269 None:intergenic 40.0%
AAATCGAGTGTCATGCTGTG+TGG + chr1.2:10605548-10605567 None:intergenic 45.0%
AACACTCCGATGACGTTTCA+GGG - chr1.2:10605825-10605844 MS.gene54046:intron 45.0%
AAGATGAGGAGGAATGAACC+GGG + chr1.2:10605367-10605386 None:intergenic 45.0%
ACCGGCGATAAGTTCAAAGA+CGG - chr1.2:10607379-10607398 MS.gene54046:CDS 45.0%
ACGTGAATTTGTCGTGTGAG+TGG - chr1.2:10606508-10606527 MS.gene54046:intron 45.0%
ATACAAGAGGCTGCATCAGA+AGG - chr1.2:10605197-10605216 MS.gene54046:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG - chr1.2:10607436-10607455 MS.gene54046:CDS 45.0%
ATTATGCTAACATGCGCTGG+GGG + chr1.2:10606787-10606806 None:intergenic 45.0%
ATTCGACCCTGAAACGTCAT+CGG + chr1.2:10605834-10605853 None:intergenic 45.0%
CGAGAATTCAAGCTCAACCA+TGG + chr1.2:10605615-10605634 None:intergenic 45.0%
CGTGAATTTGTCGTGTGAGT+GGG - chr1.2:10606509-10606528 MS.gene54046:intron 45.0%
GAACTTAGAAACGGTGTGGT+CGG + chr1.2:10605291-10605310 None:intergenic 45.0%
GAAGATGAGGAGGAATGAAC+CGG + chr1.2:10605368-10605387 None:intergenic 45.0%
GGATATGGTGATCCCTTGAT+CGG + chr1.2:10607452-10607471 None:intergenic 45.0%
GGTTGAGCTTGAATTCTCGA+AGG - chr1.2:10605616-10605635 MS.gene54046:intron 45.0%
GTGAATTTGTCGTGTGAGTG+GGG - chr1.2:10606510-10606529 MS.gene54046:intron 45.0%
TACGGTCAGAAACCGATCAA+GGG - chr1.2:10607437-10607456 MS.gene54046:CDS 45.0%
TACTATTCAAGCTGCGATGC+AGG - chr1.2:10607686-10607705 MS.gene54046:CDS 45.0%
TCAAGGGATCACCATATCCA+CGG - chr1.2:10607453-10607472 MS.gene54046:CDS 45.0%
TGAATCTGAACCGGTTGAAC+CGG + chr1.2:10605398-10605417 None:intergenic 45.0%
TGTACCTTCTCTTGACACAG+TGG + chr1.2:10605862-10605881 None:intergenic 45.0%
TTCTGATGCAGCCTCTTGTA+TGG + chr1.2:10605198-10605217 None:intergenic 45.0%
! GAAGCGTTAACGGGAAACAA+GGG - chr1.2:10605702-10605721 MS.gene54046:intron 45.0%
! TTTGGAGTCAACGATTTCGG+TGG - chr1.2:10606543-10606562 MS.gene54046:intron 45.0%
!! ACTGGTGATGGAAGCGTTAA+CGG - chr1.2:10605692-10605711 MS.gene54046:intron 45.0%
!! GGAGTGGATTGAATCTGAAC+CGG + chr1.2:10605407-10605426 None:intergenic 45.0%
!!! GACGGAGAAGGAAAGTGTTT+TGG + chr1.2:10605461-10605480 None:intergenic 45.0%
!!! TGTTTTGGTAGAGACAGGGT+TGG + chr1.2:10605446-10605465 None:intergenic 45.0%
AAAGACGGCCGATATACCAC+CGG - chr1.2:10607394-10607413 MS.gene54046:CDS 50.0%
ACACTTTCCTTCTCCGTCAC+CGG - chr1.2:10605463-10605482 MS.gene54046:CDS 50.0%
AGATGAGGAGGAATGAACCG+GGG + chr1.2:10605366-10605385 None:intergenic 50.0%
AGTGTCATGCTGTGTGGTTG+CGG + chr1.2:10605542-10605561 None:intergenic 50.0%
CTCCTCATCTTCATCACCAC+CGG - chr1.2:10605376-10605395 MS.gene54046:intron 50.0%
GAACACTCCGATGACGTTTC+AGG - chr1.2:10605824-10605843 MS.gene54046:intron 50.0%
GAGCTCAAAACGACGTCGTT+TGG + chr1.2:10605578-10605597 None:intergenic 50.0%
GATTCAATCCACTCCTTCGC+CGG - chr1.2:10605412-10605431 MS.gene54046:intron 50.0%
GCCGTCTTTGAACTTATCGC+CGG + chr1.2:10607383-10607402 None:intergenic 50.0%
GCTGCATCAGAAGGACTCAA+AGG - chr1.2:10605206-10605225 MS.gene54046:CDS 50.0%
GTACTCGTCCGGTGGTATAT+CGG + chr1.2:10607405-10607424 None:intergenic 50.0%
TTTGTCGTGTGAGTGGGGTA+AGG - chr1.2:10606515-10606534 MS.gene54046:intron 50.0%
! AACCGGTGGTGATGAAGATG+AGG + chr1.2:10605381-10605400 None:intergenic 50.0%
! AGTGCCACTGTGTCAAGAGA+AGG - chr1.2:10605855-10605874 MS.gene54046:intron 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG - chr1.2:10607361-10607380 MS.gene54046:CDS 50.0%
! GAGTACTCGTGGCGGAAATA+CGG - chr1.2:10607419-10607438 MS.gene54046:CDS 50.0%
!! CTGGTGATGGAAGCGTTAAC+GGG - chr1.2:10605693-10605712 MS.gene54046:intron 50.0%
!! GACAGGGTTGGTGTTTGAAC+CGG + chr1.2:10605434-10605453 None:intergenic 50.0%
!! GGAAGCGTTAACGGGAAACA+AGG - chr1.2:10605701-10605720 MS.gene54046:intron 50.0%
!! TTCATCACCACCGGTTCAAC+CGG - chr1.2:10605385-10605404 MS.gene54046:intron 50.0%
ATCTGAACCGGTTGAACCGG+TGG + chr1.2:10605395-10605414 None:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG - chr1.2:10607708-10607727 MS.gene54046:CDS 55.0%
GAGTGGGGTAAGGCTACGTT+TGG - chr1.2:10606525-10606544 MS.gene54046:intron 55.0%
GCTCCACGTGTTTCCTTGCT+GGG + chr1.2:10607611-10607630 None:intergenic 55.0%
GGAGTCAACGATTTCGGTGG+TGG - chr1.2:10606546-10606565 MS.gene54046:intron 55.0%
TGCGGTTGAACAAAGCTCGC+CGG + chr1.2:10605524-10605543 None:intergenic 55.0%
TGTTTGAACCGGCGAAGGAG+TGG + chr1.2:10605423-10605442 None:intergenic 55.0%
! CAACGATTTCGGTGGTGGTG+TGG - chr1.2:10606551-10606570 MS.gene54046:intron 55.0%
! CGGTGGTGATGAAGATGAGG+AGG + chr1.2:10605378-10605397 None:intergenic 55.0%
! GGTTTTCCGCCGGAGATAGT+TGG + chr1.2:10605758-10605777 None:intergenic 55.0%
! GTTGGTGTTTGAACCGGCGA+AGG + chr1.2:10605428-10605447 None:intergenic 55.0%
!! AGATAGTTGGTGTCGCCGCT+GGG + chr1.2:10605745-10605764 None:intergenic 55.0%
AATCTCTGTGCGTCACGCGC+CGG - chr1.2:10605502-10605521 MS.gene54046:CDS 60.0%
ATGCTAACATGCGCTGGGGG+TGG + chr1.2:10606784-10606803 None:intergenic 60.0%
CGATGCAGGAGAACGCATCC+GGG - chr1.2:10607700-10607719 MS.gene54046:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG - chr1.2:10607713-10607732 MS.gene54046:CDS 60.0%
CGCTCCACGTGTTTCCTTGC+TGG + chr1.2:10607612-10607631 None:intergenic 60.0%
GCGACACCAACTATCTCCGG+CGG - chr1.2:10605749-10605768 MS.gene54046:intron 60.0%
GCGATGCAGGAGAACGCATC+CGG - chr1.2:10607699-10607718 MS.gene54046:CDS 60.0%
GCGGCGACACCAACTATCTC+CGG - chr1.2:10605746-10605765 MS.gene54046:intron 60.0%
GGAGAACGCATCCGGGATTG+TGG - chr1.2:10607707-10607726 MS.gene54046:CDS 60.0%
GTGCCCAGCAAGGAAACACG+TGG - chr1.2:10607605-10607624 MS.gene54046:CDS 60.0%
TACCACCGGACGAGTACTCG+TGG - chr1.2:10607408-10607427 MS.gene54046:CDS 60.0%
TGACGCACAGAGATTGGCGC+CGG + chr1.2:10605497-10605516 None:intergenic 60.0%
TGCTAACATGCGCTGGGGGT+GGG + chr1.2:10606783-10606802 None:intergenic 60.0%
TTAACCGAACCGGTCACGCC+CGG - chr1.2:10605330-10605349 MS.gene54046:intron 60.0%
TTAGACGGCACCGCCGATAG+CGG + chr1.2:10605782-10605801 None:intergenic 60.0%
TTCCGCCACGAGTACTCGTC+CGG + chr1.2:10607416-10607435 None:intergenic 60.0%
!! CGGCGGTGCCGTCTAAGAAA+AGG - chr1.2:10605786-10605805 MS.gene54046:intron 60.0%
!! CTGTAAGAGGGTGCCCAGCA+AGG - chr1.2:10607595-10607614 MS.gene54046:CDS 60.0%
!! GAGATAGTTGGTGTCGCCGC+TGG + chr1.2:10605746-10605765 None:intergenic 60.0%
CACCGGACGAGTACTCGTGG+CGG - chr1.2:10607411-10607430 MS.gene54046:CDS 65.0%
CGGAAAACCGCCGCTATCGG+CGG - chr1.2:10605769-10605788 MS.gene54046:intron 65.0%
CGGCGGAAAACCGCCGCTAT+CGG - chr1.2:10605766-10605785 MS.gene54046:intron 65.0%
GGCGCGTGACGCACAGAGAT+TGG + chr1.2:10605503-10605522 None:intergenic 65.0%
TCCGTCACCGGCACTGTCAC+CGG - chr1.2:10605475-10605494 MS.gene54046:CDS 65.0%
TGAACCGGGCGTGACCGGTT+CGG + chr1.2:10605337-10605356 None:intergenic 65.0%
!! ATTGGCGCCGGTGACAGTGC+CGG + chr1.2:10605485-10605504 None:intergenic 65.0%
!! CGATAGCGGCGGTTTTCCGC+CGG + chr1.2:10605768-10605787 None:intergenic 65.0%
!! GACAGTGCCGGTGACGGAGA+AGG + chr1.2:10605473-10605492 None:intergenic 65.0%
AACCGGGGCGCGTCTGAACC+GGG + chr1.2:10605351-10605370 None:intergenic 70.0%
CGCCACGAGTACTCGTCCGG+TGG + chr1.2:10607413-10607432 None:intergenic 70.0%
GAACCGGGGCGCGTCTGAAC+CGG + chr1.2:10605352-10605371 None:intergenic 70.0%
GCGTCTGAACCGGGCGTGAC+CGG + chr1.2:10605342-10605361 None:intergenic 70.0%
!! GCCGGTGACAGTGCCGGTGA+CGG + chr1.2:10605479-10605498 None:intergenic 70.0%
! GACGGCACCGCCGATAGCGG+CGG + chr1.2:10605779-10605798 None:intergenic 75.0%
! CGCCCGGTTCAGACGCGCCC+CGG - chr1.2:10605346-10605365 MS.gene54046:intron 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 10605149 10607752 10605149 ID=MS.gene54046
chr1.2 mRNA 10605149 10607752 10605149 ID=MS.gene54046.t1;Parent=MS.gene54046
chr1.2 exon 10607025 10607752 10607025 ID=MS.gene54046.t1.exon1;Parent=MS.gene54046.t1
chr1.2 CDS 10607025 10607752 10607025 ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1
chr1.2 exon 10605427 10605552 10605427 ID=MS.gene54046.t1.exon2;Parent=MS.gene54046.t1
chr1.2 CDS 10605427 10605552 10605427 ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1
chr1.2 exon 10605149 10605326 10605149 ID=MS.gene54046.t1.exon3;Parent=MS.gene54046.t1
chr1.2 CDS 10605149 10605326 10605149 ID=cds.MS.gene54046.t1;Parent=MS.gene54046.t1
Gene Sequence

>MS.gene54046

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCCTCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCGCCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCGGCACTGTCACCGGCGCCAATCTCTGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAACTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGGGAACACTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGGTACACCTACACTCCTTTATCTGCGTTTCACTCAATTATAATCCTTTTAGAGTTTACCTTTGAATGGAAGGTGTTTCTGATGTCCAATATGTGGTAGTGTTTGCGACAATCAATGATAATTTTTTTTTTCTACTCCGTAGATTAACATAATGACAAATACTCCCTCCGTTTCAAAATACATGTCCAAATCAATAACTTCACATATGCCAATGCACAATTTTGACCGTTAATATCTTTAATTATCTAAATTAAAAAATTATAAAAATTTAATATTTTGAAAATATTTGTCGAGACAAATCAAACAACATCTTACATGCTAATATTTGTATTTATACATTAGTAAAAAAGTATGGTCAAAGTAAGTCAAGTGAATAGTGCACATTGCAAAAATTGGACATGTATTTTGAAACGGAGGGAGTAACAATCAAAACTCATACGAGTGATAAAACAACAAAGACTCGTAACCCGATTACATGCATTAACGTTTGACTGATATTTTTACCGGTTAGGTTAAAGTATGTGGACGGTCATGTATATATTTTTGATTTTTGATTGGAGCCTTTTTTGTTTGTCTCGTTCACATTAATTAGAAATAAAGAAAGGGAAAAGGTTAATGGTTTCTTAACGAATCACGTGAATTTGTCGTGTGAGTGGGGTAAGGCTACGTTTGGAGTCAACGATTTCGGTGGTGGTGTGGTTAAAATGCTTTAATAGGTAACAGTGTGTTTGAAAGTGACAAGACAACATAGGGTTCTGTTTTTGCTGTCTGAGAAAGAAAACACTAGAGAGAAATTCAAAAGTTCAAACAAAGTTAAAGTGATGTGAACTCTCTTTTTTCCTTTTTCAATTCCCTTCACTTAATTGCTTTGACTGTTGACTTTTTTTTGTTAATTTATTAATGCACCCACCCCCAGCGCATGTTAGCATAATAGTAACCCATTTTTTGATTATGAGTTCAAATTAAATTGAGGGATAATATAGGATTTTAATTTTTGTGGGAATACAAATTTGTGTGTACCATATCATTTGATAGTTTTGGAGTACTTTAGTCACTCCTTTGACTAAAAAGTAATTCGAAATAAGATCCATGAGTTAGGGTTTTGTTGTCACATAGTCGCTGTATCAATGATTATTTGATCAAGATTGTCGATACAAAAATATCAATTTCAATTTTTATTTTACAATTCAATGTACGGAGCTTAGAAGTTAAGTTAGACCTAGATTGGCCTGATTTTAAATGAACGACCACAAATGTTTTGACTGCTAAGACCGGAATGTTTTAGTTAACTTGGAACAATTTACTCTTATCCAATTGGAATATGGGAAATACTTTTTTTTTTGAGAGGAAATATGGGAAATACTTGTGATTTAATCATTATGATCATGATTGTAATATTGAATTTATTCAGCATGATTATACTAATACCCAACAGAAGTAACAAGTTTCTTGAATTTGATTTTTTTTTTACCAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACGGCCGATATACCACCGGACGAGTACTCGTGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGGTAAGAGTTATACACAATCAATCCGATCTCCACCGTTAATTATGTTGACTTTTATTAAAGACTTGTTTTCTAATGTTGATTTATTCTTTCTTTTAATCAGAGGCTATTACAAGTGTAGCACTGTAAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>MS.gene54046.t1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPTISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST