AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021857

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021857.t1 MTR_7g013120 95.652 253 11 0 1 253 1 253 0.0 507
MS.gene021857.t1 MTR_7g013140 78.261 253 53 2 1 253 1 251 2.75e-149 417
MS.gene021857.t1 MTR_7g013150 75.984 254 59 2 1 253 1 253 7.48e-146 408
MS.gene021857.t1 MTR_8g058990 74.409 254 63 2 1 253 1 253 4.69e-141 396
MS.gene021857.t1 MTR_8g464350 70.588 255 72 3 1 253 1 254 9.27e-130 367
MS.gene021857.t1 MTR_5g079950 57.895 247 97 4 10 250 10 255 8.41e-100 291
MS.gene021857.t1 MTR_3g094060 56.612 242 100 3 12 251 14 252 1.11e-97 286
MS.gene021857.t1 MTR_3g094040 56.198 242 101 3 12 251 14 252 1.73e-96 283
MS.gene021857.t1 MTR_2g097030 55.785 242 102 3 13 250 16 256 1.71e-95 281
MS.gene021857.t1 MTR_3g435430 60.444 225 84 3 29 251 25 246 2.80e-95 280
MS.gene021857.t1 MTR_5g041700 54.839 248 107 3 6 251 2 246 5.17e-95 279
MS.gene021857.t1 MTR_7g061720 58.036 224 91 2 29 250 32 254 7.54e-95 279
MS.gene021857.t1 MTR_5g075320 53.755 253 107 5 4 251 3 250 2.58e-94 277
MS.gene021857.t1 MTR_4g081950 58.667 225 88 3 29 251 61 282 5.60e-93 275
MS.gene021857.t1 MTR_1g085460 56.769 229 94 3 29 253 30 257 1.26e-91 271
MS.gene021857.t1 MTR_4g063975 55.417 240 102 3 15 250 16 254 4.79e-90 267
MS.gene021857.t1 MTR_7g011060 53.036 247 106 4 6 251 2 239 8.97e-90 266
MS.gene021857.t1 MTR_1g026020 55.022 229 97 4 29 253 29 255 1.03e-89 266
MS.gene021857.t1 MTR_3g466760 52.344 256 114 4 1 251 7 259 3.34e-88 262
MS.gene021857.t1 MTR_3g466790 52.344 256 114 4 1 251 1 253 3.60e-88 262
MS.gene021857.t1 MTR_7g111010 47.451 255 129 3 3 253 1 254 1.38e-84 253
MS.gene021857.t1 MTR_4g124340 52.000 225 104 2 28 250 60 282 1.57e-84 254
MS.gene021857.t1 MTR_7g110990 51.528 229 106 3 29 253 12 239 5.32e-84 251
MS.gene021857.t1 MTR_5g011210 52.402 229 104 4 28 253 36 262 1.50e-81 245
MS.gene021857.t1 MTR_6g012520 52.000 250 110 4 3 251 1 241 5.01e-80 241
MS.gene021857.t1 MTR_4g102450 53.070 228 102 4 29 253 36 261 3.98e-79 239
MS.gene021857.t1 MTR_0040s0140 48.780 246 121 3 10 251 11 255 1.67e-78 237
MS.gene021857.t1 MTR_2g090255 47.755 245 122 3 12 251 8 251 1.80e-77 234
MS.gene021857.t1 MTR_5g076950 52.212 226 104 3 28 251 40 263 2.01e-76 233
MS.gene021857.t1 MTR_0008s0120 50.000 256 68 6 1 253 1 199 4.80e-72 219
MS.gene021857.t1 MTR_3g064510 45.299 234 116 6 28 251 52 283 1.78e-64 202
MS.gene021857.t1 MTR_2g090270 32.917 240 138 7 25 253 31 258 4.28e-33 121
MS.gene021857.t1 MTR_0122s0020 33.740 246 140 8 19 253 31 264 2.36e-32 119
MS.gene021857.t1 MTR_2g090265 30.970 268 156 9 3 253 1 256 4.30e-31 115
MS.gene021857.t1 MTR_6g012500 50.476 105 51 1 147 251 176 279 1.73e-27 107
MS.gene021857.t1 MTR_4g028640 28.727 275 154 11 5 253 6 264 2.32e-21 90.5
MS.gene021857.t1 MTR_0809s0010 28.750 240 142 8 28 253 46 270 3.21e-21 90.1
MS.gene021857.t1 MTR_4g075790 29.675 246 141 9 17 248 11 238 1.20e-19 85.5
MS.gene021857.t1 MTR_0118s0070 28.085 235 142 9 34 253 53 275 3.64e-19 84.7
MS.gene021857.t1 MTR_0122s0020 33.333 183 99 8 19 190 31 201 3.15e-18 80.9
MS.gene021857.t1 MTR_4g099370 27.451 255 168 9 1 248 1 245 1.07e-17 80.1
MS.gene021857.t1 MTR_5g013440 28.390 236 139 10 32 253 32 251 2.61e-16 76.3
MS.gene021857.t1 MTR_4g098930 25.283 265 163 13 1 248 1 247 2.77e-11 62.4
MS.gene021857.t1 MTR_1g085365 53.704 54 25 0 197 250 4 57 9.80e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021857.t1 AT5G39280 65.801 231 76 2 23 253 48 275 1.29e-114 330
MS.gene021857.t1 AT5G39300 64.831 236 80 2 18 253 44 276 2.94e-114 329
MS.gene021857.t1 AT5G39270 62.931 232 83 2 22 253 51 279 6.32e-110 318
MS.gene021857.t1 AT5G39290 62.500 232 84 2 22 253 51 279 4.14e-109 316
MS.gene021857.t1 AT5G02260 56.175 251 100 3 10 251 6 255 3.23e-102 298
MS.gene021857.t1 AT2G39700 56.299 254 106 3 1 250 1 253 6.64e-102 297
MS.gene021857.t1 AT2G37640 59.821 224 87 2 29 250 36 258 2.19e-98 288
MS.gene021857.t1 AT5G39310 59.735 226 87 3 29 253 90 312 1.09e-97 288
MS.gene021857.t1 AT2G40610 55.378 251 105 4 3 251 7 252 1.25e-97 286
MS.gene021857.t1 AT3G55500 54.475 257 109 3 1 250 1 256 1.30e-97 286
MS.gene021857.t1 AT5G05290 60.889 225 84 2 29 251 32 254 2.36e-97 285
MS.gene021857.t1 AT5G56320 56.432 241 100 3 13 251 13 250 1.51e-96 283
MS.gene021857.t1 AT5G56320 56.432 241 100 3 13 251 13 250 1.51e-96 283
MS.gene021857.t1 AT5G56320 56.432 241 100 3 13 251 13 250 1.47e-95 282
MS.gene021857.t1 AT1G69530 55.466 247 101 4 11 251 5 248 6.98e-94 276
MS.gene021857.t1 AT1G69530 55.466 247 101 4 11 251 5 248 6.98e-94 276
MS.gene021857.t1 AT2G03090 57.143 231 94 3 23 251 24 251 4.10e-93 275
MS.gene021857.t1 AT1G69530 55.556 243 99 4 11 247 5 244 2.53e-92 273
MS.gene021857.t1 AT2G28950 57.333 225 93 2 29 251 31 254 3.98e-92 272
MS.gene021857.t1 AT2G37640 59.903 207 80 2 46 250 28 233 5.43e-90 266
MS.gene021857.t1 AT5G39260 55.794 233 94 4 22 253 38 262 5.66e-89 264
MS.gene021857.t1 AT3G29030 58.296 223 85 3 29 251 38 252 1.76e-88 263
MS.gene021857.t1 AT1G26770 52.245 245 109 4 12 251 6 247 2.21e-88 262
MS.gene021857.t1 AT1G26770 52.245 245 109 4 12 251 16 257 3.58e-88 262
MS.gene021857.t1 AT4G01630 50.598 251 117 4 7 253 8 255 3.94e-87 259
MS.gene021857.t1 AT1G20190 52.423 227 102 4 31 253 28 252 3.84e-83 249
MS.gene021857.t1 AT1G62980 49.590 244 118 4 13 253 15 256 3.43e-81 244
MS.gene021857.t1 AT1G12560 53.070 228 101 5 29 253 37 261 1.18e-80 243
MS.gene021857.t1 AT1G69530 49.393 247 86 5 11 251 5 218 6.53e-80 240
MS.gene021857.t1 AT1G69530 55.825 206 82 4 11 210 5 207 1.13e-79 240
MS.gene021857.t1 AT3G03220 48.230 226 113 3 28 251 39 262 5.70e-72 221
MS.gene021857.t1 AT4G38210 44.672 244 127 4 12 251 14 253 1.75e-71 219
MS.gene021857.t1 AT3G15370 46.888 241 120 5 14 250 11 247 3.55e-69 214
MS.gene021857.t1 AT1G20190 51.546 194 88 4 64 253 2 193 1.27e-67 207
MS.gene021857.t1 AT3G15370 41.697 271 120 6 14 250 11 277 1.91e-62 197
MS.gene021857.t1 AT4G28250 34.454 238 132 8 28 253 35 260 3.74e-30 113
MS.gene021857.t1 AT2G20750 32.773 238 139 8 28 253 39 267 9.26e-29 110
MS.gene021857.t1 AT4G28250 33.755 237 129 8 28 253 35 254 3.66e-28 108
MS.gene021857.t1 AT1G65680 30.943 265 152 11 3 253 26 273 2.87e-25 100
MS.gene021857.t1 AT2G45110 30.672 238 135 9 32 253 36 259 1.03e-21 91.3
MS.gene021857.t1 AT1G65681 29.204 226 132 9 42 253 11 222 2.44e-19 84.0
MS.gene021857.t1 AT3G60570 28.625 269 159 9 4 253 3 257 2.74e-19 84.7
MS.gene021857.t1 AT4G17030 26.587 252 171 8 3 248 1 244 3.20e-17 79.0
MS.gene021857.t1 AT3G45970 27.523 218 127 8 48 249 15 217 4.41e-14 70.1
MS.gene021857.t1 AT3G45970 26.636 214 126 8 52 249 46 244 1.78e-11 63.2
MS.gene021857.t1 AT3G45960 26.923 208 132 8 52 249 46 243 2.06e-11 62.8
MS.gene021857.t1 AT4G38400 26.168 214 126 9 52 249 47 244 5.25e-11 61.6

Find 53 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGGGCTTGTTGTAATT+TGG 0.191352 7.1:+82848337 None:intergenic
CAAATGGCATTGACTTAAAT+TGG 0.203443 7.1:-82848881 MS.gene021857:CDS
CACACAATTGGGGACAAAAT+TGG 0.208585 7.1:-82848063 MS.gene021857:CDS
CATGGCTTTATCTCACTCTT+TGG 0.222101 7.1:-82848946 MS.gene021857:CDS
GGAACACGTTTATACTTAAC+TGG 0.224439 7.1:+82848229 None:intergenic
TTGGGACACTGGAGTGAATT+TGG 0.231054 7.1:-82848044 MS.gene021857:CDS
ACCAGAGGCGTCACCATAAA+AGG 0.287880 7.1:+82848842 None:intergenic
GTTCCTTCGAATTGGCAATT+TGG 0.309372 7.1:-82847956 MS.gene021857:CDS
ACAACAAGCCCTCTGAAAAT+TGG 0.311533 7.1:-82848330 MS.gene021857:CDS
GATCTCTTCAAACAAGGATA+TGG 0.315630 7.1:-82848505 MS.gene021857:CDS
AGCACTGCTCTATTCAATAA+TGG 0.326683 7.1:-82848463 MS.gene021857:CDS
GTTTCTCATGTTCGTGTTAG+AGG 0.335652 7.1:-82848115 MS.gene021857:CDS
TACGAGGAGCATCATTAAAA+AGG 0.341890 7.1:+82848914 None:intergenic
GGATTTCGATGTCACACAAT+TGG 0.361834 7.1:-82848075 MS.gene021857:CDS
GATTTCGATGTCACACAATT+GGG 0.382188 7.1:-82848074 MS.gene021857:CDS
CACGAGTGATGGAAAGACTT+TGG 0.387949 7.1:-82847993 MS.gene021857:CDS
ACACAATTGGGGACAAAATT+GGG 0.394310 7.1:-82848062 MS.gene021857:CDS
ACGAGTGATGGAAAGACTTT+GGG 0.409816 7.1:-82847992 MS.gene021857:CDS
GCAATTTGGTCAGACTTATG+AGG 0.412316 7.1:-82847942 MS.gene021857:CDS
ATTGAATAGAGCAGTGCTTA+AGG 0.445050 7.1:+82848468 None:intergenic
GGTGTTAGGTTTGAACTCAA+TGG 0.472314 7.1:-82848190 MS.gene021857:CDS
TTCAATAATGGATTTACTTG+TGG 0.476193 7.1:-82848451 MS.gene021857:CDS
CTCGTACAAGCCATGTCAAA+TGG 0.478409 7.1:-82848897 MS.gene021857:CDS
GAGGGCTTGTTGTAATTTGG+AGG 0.483591 7.1:+82848340 None:intergenic
GTGTATAATGTTGCCAATGC+TGG 0.498679 7.1:-82848142 MS.gene021857:CDS
TTTGTGTAAACGACCCTCAA+TGG 0.501152 7.1:-82848411 MS.gene021857:CDS
TTTCTTGTTACCACGAGTGA+TGG 0.501449 7.1:-82848004 MS.gene021857:CDS
TTTGTTGCAGACACTGTGAT+TGG 0.504293 7.1:+82848370 None:intergenic
CAATTTGGTCAGACTTATGA+GGG 0.506118 7.1:-82847941 MS.gene021857:CDS
CAATTCGAAGGAACAACAAA+AGG 0.513715 7.1:+82847965 None:intergenic
CGTGTTCCATGTGTTAAAAG+TGG 0.514431 7.1:-82848214 MS.gene021857:CDS
TTTCTCATGTTCGTGTTAGA+GGG 0.514891 7.1:-82848114 MS.gene021857:CDS
AGCTTTGTAATATGCAATAG+AGG 0.516905 7.1:+82848261 None:intergenic
TCTATTGCATATTACAAAGC+TGG 0.519391 7.1:-82848259 MS.gene021857:CDS
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.1:+82848129 None:intergenic
TAGAGCAGTGCTTAAGGCTG+TGG 0.532284 7.1:+82848474 None:intergenic
GTGTTCCATGTGTTAAAAGT+GGG 0.535105 7.1:-82848213 MS.gene021857:CDS
TAAGTCAATGCCATTTGACA+TGG 0.550841 7.1:+82848887 None:intergenic
CAATGGTGCATAAAAGATGC+AGG 0.555670 7.1:-82848394 MS.gene021857:CDS
GTGTGACATCGAAATCCAAC+CGG 0.556542 7.1:+82848081 None:intergenic
TGGGGACAAAATTGGGACAC+TGG 0.584116 7.1:-82848055 MS.gene021857:CDS
GACACTGGAGTGAATTTGGT+AGG 0.601480 7.1:-82848040 MS.gene021857:CDS
ATTTCGATGTCACACAATTG+GGG 0.604167 7.1:-82848073 MS.gene021857:CDS
GAACACGTTTATACTTAACT+GGG 0.611144 7.1:+82848230 None:intergenic
ACGCATGGTTGCAGCACCAG+AGG 0.612142 7.1:+82848827 None:intergenic
GTTAGAGGGTCTAAGACGAC+CGG 0.612512 7.1:-82848100 MS.gene021857:CDS
TGACCAAATTGCCAATTCGA+AGG 0.618110 7.1:+82847953 None:intergenic
GAGGGTCTAAGACGACCGGT+TGG 0.633449 7.1:-82848096 MS.gene021857:CDS
CATTTGACATGGCTTGTACG+AGG 0.634199 7.1:+82848898 None:intergenic
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.1:-82848511 MS.gene021857:CDS
CAAAGTCTTTCCATCACTCG+TGG 0.658912 7.1:+82847994 None:intergenic
TGTTCCATGTGTTAAAAGTG+GGG 0.697172 7.1:-82848212 MS.gene021857:CDS
GTTCCATGTGTTAAAAGTGG+GGG 0.697509 7.1:-82848211 MS.gene021857:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCATAAAAAATAACT+TGG + chr7.1:82848087-82848106 None:intergenic 15.0%
!! TCATATTATGATATAATGTA+TGG - chr7.1:82848307-82848326 MS.gene021857:CDS 15.0%
!!! GATTTTTCTTAATTTTGTGT+GGG + chr7.1:82848263-82848282 None:intergenic 20.0%
!!! TGATTTTTCTTAATTTTGTG+TGG + chr7.1:82848264-82848283 None:intergenic 20.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.1:82848326-82848345 MS.gene021857:CDS 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.1:82848325-82848344 MS.gene021857:CDS 25.0%
!! AGGTGAACATTTTATAACTT+AGG + chr7.1:82848592-82848611 None:intergenic 25.0%
!!! TCGTTATTTTTTGATTGTCT+TGG - chr7.1:82848706-82848725 MS.gene021857:intron 25.0%
!!! TTCAATAATGGATTTACTTG+TGG - chr7.1:82848419-82848438 MS.gene021857:CDS 25.0%
AAAATAACTTGGCAAGAAGA+AGG + chr7.1:82848076-82848095 None:intergenic 30.0%
AGCATCATTAAAAAGGTGAA+AGG + chr7.1:82847952-82847971 None:intergenic 30.0%
GAACACGTTTATACTTAACT+GGG + chr7.1:82848643-82848662 None:intergenic 30.0%
TCTATTGCATATTACAAAGC+TGG - chr7.1:82848611-82848630 MS.gene021857:intron 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.1:82848327-82848346 MS.gene021857:CDS 30.0%
! AGCTTTGTAATATGCAATAG+AGG + chr7.1:82848612-82848631 None:intergenic 30.0%
!! CAAATGGCATTGACTTAAAT+TGG - chr7.1:82847989-82848008 MS.gene021857:CDS 30.0%
!! TTAGGTCAAAGTGTTTTAGA+GGG + chr7.1:82848574-82848593 None:intergenic 30.0%
!!! CTCAAATTTTTCGGGATAAA+TGG + chr7.1:82848239-82848258 None:intergenic 30.0%
ACACAATTGGGGACAAAATT+GGG - chr7.1:82848808-82848827 MS.gene021857:intron 35.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.1:82848407-82848426 MS.gene021857:CDS 35.0%
ATTGAATAGAGCAGTGCTTA+AGG + chr7.1:82848405-82848424 None:intergenic 35.0%
ATTTCGATGTCACACAATTG+GGG - chr7.1:82848797-82848816 MS.gene021857:intron 35.0%
CAATTCGAAGGAACAACAAA+AGG + chr7.1:82848908-82848927 None:intergenic 35.0%
CAATTTGGTCAGACTTATGA+GGG - chr7.1:82848929-82848948 MS.gene021857:CDS 35.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.1:82848365-82848384 MS.gene021857:CDS 35.0%
GATTTCGATGTCACACAATT+GGG - chr7.1:82848796-82848815 MS.gene021857:intron 35.0%
GGAACACGTTTATACTTAAC+TGG + chr7.1:82848644-82848663 None:intergenic 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.1:82848328-82848347 MS.gene021857:CDS 35.0%
GTGTTCCATGTGTTAAAAGT+GGG - chr7.1:82848657-82848676 MS.gene021857:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.1:82848359-82848378 MS.gene021857:CDS 35.0%
TGTTCCATGTGTTAAAAGTG+GGG - chr7.1:82848658-82848677 MS.gene021857:intron 35.0%
TTTCTCATGTTCGTGTTAGA+GGG - chr7.1:82848756-82848775 MS.gene021857:intron 35.0%
! CATCTTTTATGCACCATTGA+GGG + chr7.1:82848475-82848494 None:intergenic 35.0%
! TAAGTCAATGCCATTTGACA+TGG + chr7.1:82847986-82848005 None:intergenic 35.0%
! TGTGTGGGACTCAAATTTTT+CGG + chr7.1:82848248-82848267 None:intergenic 35.0%
!! CTTAGGTCAAAGTGTTTTAG+AGG + chr7.1:82848575-82848594 None:intergenic 35.0%
!! TACGAGGAGCATCATTAAAA+AGG + chr7.1:82847959-82847978 None:intergenic 35.0%
!!! CTTTTGTTGTTCCTTCGAAT+TGG - chr7.1:82848906-82848925 MS.gene021857:CDS 35.0%
!!! TAGGTCAAAGTGTTTTAGAG+GGG + chr7.1:82848573-82848592 None:intergenic 35.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.1:82848744-82848763 None:intergenic 40.0%
CAATGGTGCATAAAAGATGC+AGG - chr7.1:82848476-82848495 MS.gene021857:CDS 40.0%
CACACAATTGGGGACAAAAT+TGG - chr7.1:82848807-82848826 MS.gene021857:intron 40.0%
CGTGTTCCATGTGTTAAAAG+TGG - chr7.1:82848656-82848675 MS.gene021857:intron 40.0%
GAAGAAGGAAAACTTACGCA+TGG + chr7.1:82848061-82848080 None:intergenic 40.0%
GCAATTTGGTCAGACTTATG+AGG - chr7.1:82848928-82848947 MS.gene021857:CDS 40.0%
GGATTTCGATGTCACACAAT+TGG - chr7.1:82848795-82848814 MS.gene021857:intron 40.0%
GGTGTTAGGTTTGAACTCAA+TGG - chr7.1:82848680-82848699 MS.gene021857:intron 40.0%
GTGTATAATGTTGCCAATGC+TGG - chr7.1:82848728-82848747 MS.gene021857:intron 40.0%
GTTCCATGTGTTAAAAGTGG+GGG - chr7.1:82848659-82848678 MS.gene021857:intron 40.0%
GTTCCTTCGAATTGGCAATT+TGG - chr7.1:82848914-82848933 MS.gene021857:CDS 40.0%
GTTTCTCATGTTCGTGTTAG+AGG - chr7.1:82848755-82848774 MS.gene021857:intron 40.0%
TGACCAAATTGCCAATTCGA+AGG + chr7.1:82848920-82848939 None:intergenic 40.0%
TTTCTTGTTACCACGAGTGA+TGG - chr7.1:82848866-82848885 MS.gene021857:CDS 40.0%
TTTGTGTAAACGACCCTCAA+TGG - chr7.1:82848459-82848478 MS.gene021857:CDS 40.0%
TTTGTTGCAGACACTGTGAT+TGG + chr7.1:82848503-82848522 None:intergenic 40.0%
! ACAACAAGCCCTCTGAAAAT+TGG - chr7.1:82848540-82848559 MS.gene021857:intron 40.0%
! ACGAGTGATGGAAAGACTTT+GGG - chr7.1:82848878-82848897 MS.gene021857:CDS 40.0%
! GATGCTCATGCAACCTTTTA+TGG - chr7.1:82848015-82848034 MS.gene021857:CDS 40.0%
! GCATCTTTTATGCACCATTG+AGG + chr7.1:82848476-82848495 None:intergenic 40.0%
! GGATTGCACCAATTTTCAGA+GGG + chr7.1:82848551-82848570 None:intergenic 40.0%
! GTGTGGGACTCAAATTTTTC+GGG + chr7.1:82848247-82848266 None:intergenic 40.0%
!! TCAGAGGGCTTGTTGTAATT+TGG + chr7.1:82848536-82848555 None:intergenic 40.0%
!!! AGGTCAAAGTGTTTTAGAGG+GGG + chr7.1:82848572-82848591 None:intergenic 40.0%
CAAAGTCTTTCCATCACTCG+TGG + chr7.1:82848879-82848898 None:intergenic 45.0%
CTCGTACAAGCCATGTCAAA+TGG - chr7.1:82847973-82847992 MS.gene021857:CDS 45.0%
GACACTGGAGTGAATTTGGT+AGG - chr7.1:82848830-82848849 MS.gene021857:CDS 45.0%
GTGTGACATCGAAATCCAAC+CGG + chr7.1:82848792-82848811 None:intergenic 45.0%
TTGGGACACTGGAGTGAATT+TGG - chr7.1:82848826-82848845 MS.gene021857:intron 45.0%
! CACGAGTGATGGAAAGACTT+TGG - chr7.1:82848877-82848896 MS.gene021857:CDS 45.0%
! CATTTGACATGGCTTGTACG+AGG + chr7.1:82847975-82847994 None:intergenic 45.0%
! GGGATTGCACCAATTTTCAG+AGG + chr7.1:82848552-82848571 None:intergenic 45.0%
!! ACACCCCCACTTTTAACACA+TGG + chr7.1:82848665-82848684 None:intergenic 45.0%
!! GAGGGCTTGTTGTAATTTGG+AGG + chr7.1:82848533-82848552 None:intergenic 45.0%
!! GTGTTAAAAGTGGGGGTGTT+AGG - chr7.1:82848666-82848685 MS.gene021857:intron 45.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.1:82848335-82848354 MS.gene021857:CDS 50.0%
TAGAGCAGTGCTTAAGGCTG+TGG + chr7.1:82848399-82848418 None:intergenic 50.0%
TGGGGACAAAATTGGGACAC+TGG - chr7.1:82848815-82848834 MS.gene021857:intron 50.0%
! GTTAGAGGGTCTAAGACGAC+CGG - chr7.1:82848770-82848789 MS.gene021857:intron 50.0%
!! ACCAGAGGCGTCACCATAAA+AGG + chr7.1:82848031-82848050 None:intergenic 50.0%
!! ACCTTTTATGGTGACGCCTC+TGG - chr7.1:82848027-82848046 MS.gene021857:CDS 50.0%
ACGCATGGTTGCAGCACCAG+AGG + chr7.1:82848046-82848065 None:intergenic 60.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.1:82848341-82848360 MS.gene021857:CDS 60.0%
! GAGGGTCTAAGACGACCGGT+TGG - chr7.1:82848774-82848793 MS.gene021857:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 82847925 82848967 82847925 ID=MS.gene021857
chr7.1 mRNA 82847925 82848967 82847925 ID=MS.gene021857.t1;Parent=MS.gene021857
chr7.1 exon 82848829 82848967 82848829 ID=MS.gene021857.t1.exon1;Parent=MS.gene021857.t1
chr7.1 CDS 82848829 82848967 82848829 ID=cds.MS.gene021857.t1;Parent=MS.gene021857.t1
chr7.1 exon 82847925 82848547 82847925 ID=MS.gene021857.t1.exon2;Parent=MS.gene021857.t1
chr7.1 CDS 82847925 82848547 82847925 ID=cds.MS.gene021857.t1;Parent=MS.gene021857.t1
Gene Sequence

>MS.gene021857

ATGGCTTTATCTCACTCTTTGGTTCCTTTCACCTTTTTAATGATGCTCCTCGTACAAGCCATGTCAAATGGCATTGACTTAAATTGGTACGATGCTCATGCAACCTTTTATGGTGACGCCTCTGGTGCTGCAACCATGCGTAAGTTTTCCTTCTTCTTGCCAAGTTATTTTTTATGATATGTAAGTCTCAGATAGATAAAGATCAGACGACTCATATTTTAATTTTTCTTTAAAGTTAATTGATATTTTAAAATTAATATATAAGTTGTCTAATATTCATTTGAATTTGAGATCACAACTATGCATGATTTCCATTTATCCCGAAAAATTTGAGTCCCACACAAAATTAAGAAAAATCATTTTTAATTAATTTTTTTTTTGTTCATATTATGATATAATGTATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGACTTGAGACCACAGCCTTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAAATAATTTGTGTAAACGACCCTCAATGGTGCATAAAAGATGCAGGACCAATCACAGTGTCTGCAACAAATTTTTGTCCTCCAAATTACAACAAGCCCTCTGAAAATTGGTGCAATCCCCCTCTAAAACACTTTGACCTAAGTTATAAAATGTTCACCTCTATTGCATATTACAAAGCTGGTATCATCCCAGTTAAGTATAAACGTGTTCCATGTGTTAAAAGTGGGGGTGTTAGGTTTGAACTCAATGGAAATCGTTATTTTTTGATTGTCTTGGTGTATAATGTTGCCAATGCTGGTGATGTTTCTCATGTTCGTGTTAGAGGGTCTAAGACGACCGGTTGGATTTCGATGTCACACAATTGGGGACAAAATTGGGACACTGGAGTGAATTTGGTAGGACAAAGCTTGTCATTTCTTGTTACCACGAGTGATGGAAAGACTTTGGGTTTTCCTTTTGTTGTTCCTTCGAATTGGCAATTTGGTCAGACTTATGAGGGCAAGCAAAATTTTTAG
Protein sequence

>MS.gene021857.t1

MALSHSLVPFTFLMMLLVQAMSNGIDLNWYDAHATFYGDASGAATMQGACGYGDLFKQGYGLETTALSTALFNNGFTCGACFQIICVNDPQWCIKDAGPITVSATNFCPPNYNKPSENWCNPPLKHFDLSYKMFTSIAYYKAGIIPVKYKRVPCVKSGGVRFELNGNRYFLIVLVYNVANAGDVSHVRVRGSKTTGWISMSHNWGQNWDTGVNLVGQSLSFLVTTSDGKTLGFPFVVPSNWQFGQTYEGKQNF