AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021858

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021858.t1 MTR_7g013140 94.821 251 13 0 1 251 1 251 0.0 498
MS.gene021858.t1 MTR_7g013150 82.213 253 43 1 1 251 1 253 1.45e-160 445
MS.gene021858.t1 MTR_7g013120 76.285 253 58 2 1 251 1 253 2.75e-146 409
MS.gene021858.t1 MTR_8g058990 73.123 253 66 1 1 251 1 253 1.94e-137 387
MS.gene021858.t1 MTR_8g464350 70.472 254 72 2 1 251 1 254 1.59e-131 372
MS.gene021858.t1 MTR_3g094040 56.225 249 103 3 3 247 4 250 3.63e-98 287
MS.gene021858.t1 MTR_3g094060 56.225 249 103 3 3 247 4 250 6.48e-98 286
MS.gene021858.t1 MTR_7g061720 61.712 222 83 1 28 247 32 253 6.72e-98 286
MS.gene021858.t1 MTR_5g079950 54.331 254 109 2 1 247 1 254 8.84e-98 286
MS.gene021858.t1 MTR_2g097030 60.360 222 86 1 28 247 34 255 1.22e-96 283
MS.gene021858.t1 MTR_5g075320 55.823 249 104 3 4 248 3 249 1.33e-96 283
MS.gene021858.t1 MTR_3g435430 59.910 222 85 2 28 247 25 244 1.37e-93 275
MS.gene021858.t1 MTR_3g466760 55.906 254 102 4 1 247 7 257 2.87e-93 275
MS.gene021858.t1 MTR_5g041700 54.878 246 104 3 7 247 1 244 8.78e-93 273
MS.gene021858.t1 MTR_3g466790 55.512 254 103 4 1 247 1 251 5.17e-92 271
MS.gene021858.t1 MTR_4g063975 53.755 253 109 2 3 247 1 253 3.77e-91 270
MS.gene021858.t1 MTR_4g081950 53.200 250 107 3 6 247 33 280 5.25e-91 270
MS.gene021858.t1 MTR_7g011060 54.772 241 100 3 7 247 6 237 1.29e-88 263
MS.gene021858.t1 MTR_1g085460 57.848 223 88 4 28 245 30 251 2.90e-86 257
MS.gene021858.t1 MTR_1g026020 51.765 255 115 4 1 251 5 255 1.05e-85 256
MS.gene021858.t1 MTR_0040s0140 48.425 254 125 2 1 248 1 254 6.50e-85 254
MS.gene021858.t1 MTR_2g090255 48.560 243 119 2 12 248 8 250 2.23e-84 252
MS.gene021858.t1 MTR_4g124340 51.111 225 105 3 27 248 60 282 3.63e-83 250
MS.gene021858.t1 MTR_7g111010 49.020 255 123 5 3 251 1 254 4.53e-83 249
MS.gene021858.t1 MTR_5g076950 54.464 224 99 2 27 248 40 262 4.40e-82 247
MS.gene021858.t1 MTR_7g110990 53.275 229 101 4 28 251 12 239 5.75e-82 246
MS.gene021858.t1 MTR_5g011210 50.397 252 117 5 7 251 12 262 1.85e-80 243
MS.gene021858.t1 MTR_6g012520 54.357 241 101 3 7 247 8 239 2.85e-79 239
MS.gene021858.t1 MTR_4g102450 50.638 235 111 4 21 251 28 261 1.20e-76 233
MS.gene021858.t1 MTR_0008s0120 49.412 255 69 4 1 251 1 199 1.37e-75 228
MS.gene021858.t1 MTR_3g064510 47.863 234 107 6 27 248 52 282 9.50e-71 219
MS.gene021858.t1 MTR_2g090270 32.500 240 138 8 24 251 31 258 3.38e-31 116
MS.gene021858.t1 MTR_0122s0020 31.939 263 153 9 1 251 16 264 1.18e-30 115
MS.gene021858.t1 MTR_2g090265 32.218 239 138 9 25 251 30 256 2.35e-30 114
MS.gene021858.t1 MTR_6g012500 54.639 97 44 0 151 247 181 277 1.16e-27 107
MS.gene021858.t1 MTR_0809s0010 31.120 241 134 11 27 251 46 270 2.07e-24 98.6
MS.gene021858.t1 MTR_4g028640 30.522 249 142 12 18 251 32 264 4.75e-22 92.0
MS.gene021858.t1 MTR_4g099370 27.686 242 156 9 14 246 14 245 9.09e-21 88.6
MS.gene021858.t1 MTR_5g013440 28.063 253 151 11 14 251 15 251 1.87e-19 84.7
MS.gene021858.t1 MTR_0122s0020 32.000 200 111 8 1 189 16 201 1.54e-18 81.6
MS.gene021858.t1 MTR_4g075790 28.112 249 144 10 16 248 11 240 1.86e-18 82.4
MS.gene021858.t1 MTR_0118s0070 27.350 234 144 9 33 251 53 275 2.16e-18 82.4
MS.gene021858.t1 MTR_1g085365 54.902 51 23 0 195 245 4 54 5.39e-12 59.7
MS.gene021858.t1 MTR_4g098930 25.000 256 160 10 7 246 8 247 2.04e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021858.t1 AT5G39280 60.076 263 91 2 1 251 15 275 3.47e-119 341
MS.gene021858.t1 AT5G39300 59.848 264 91 2 1 251 15 276 3.00e-118 339
MS.gene021858.t1 AT5G39290 66.667 228 74 1 24 251 54 279 7.85e-117 335
MS.gene021858.t1 AT5G39270 67.105 228 73 1 24 251 54 279 1.84e-116 335
MS.gene021858.t1 AT5G02260 62.162 222 82 1 28 247 32 253 2.87e-102 298
MS.gene021858.t1 AT5G39310 62.667 225 81 2 28 251 90 312 3.03e-101 297
MS.gene021858.t1 AT5G56320 57.202 243 100 2 7 247 8 248 2.25e-99 290
MS.gene021858.t1 AT5G56320 57.202 243 100 2 7 247 8 248 2.25e-99 290
MS.gene021858.t1 AT5G56320 57.202 243 100 2 7 247 8 248 1.49e-98 290
MS.gene021858.t1 AT2G39700 61.261 222 84 1 28 247 31 252 3.24e-98 287
MS.gene021858.t1 AT2G37640 60.811 222 85 1 28 247 36 257 3.92e-98 287
MS.gene021858.t1 AT3G55500 53.968 252 107 2 5 247 4 255 2.21e-95 280
MS.gene021858.t1 AT2G40610 57.261 241 98 3 10 247 12 250 9.39e-95 278
MS.gene021858.t1 AT5G39260 59.389 229 85 3 24 251 41 262 2.75e-94 278
MS.gene021858.t1 AT5G05290 57.377 244 99 3 7 247 11 252 4.68e-94 277
MS.gene021858.t1 AT1G69530 54.918 244 106 2 6 247 5 246 7.15e-94 276
MS.gene021858.t1 AT1G69530 54.918 244 106 2 6 247 5 246 7.15e-94 276
MS.gene021858.t1 AT2G03090 56.148 244 102 3 7 247 8 249 7.99e-94 276
MS.gene021858.t1 AT1G69530 54.959 242 105 2 6 245 5 244 5.87e-93 275
MS.gene021858.t1 AT2G28950 59.009 222 89 1 28 247 31 252 2.66e-92 273
MS.gene021858.t1 AT2G37640 60.476 210 81 1 40 247 23 232 3.87e-91 269
MS.gene021858.t1 AT1G26770 54.918 244 102 3 10 247 4 245 7.67e-90 266
MS.gene021858.t1 AT1G26770 54.918 244 102 3 10 247 14 255 1.69e-89 265
MS.gene021858.t1 AT3G29030 58.636 220 84 2 28 247 38 250 1.76e-88 263
MS.gene021858.t1 AT1G12560 52.423 227 103 4 28 251 37 261 5.13e-85 254
MS.gene021858.t1 AT4G01630 51.600 250 114 5 7 251 8 255 1.16e-84 253
MS.gene021858.t1 AT1G20190 53.982 226 99 3 30 251 28 252 1.91e-81 244
MS.gene021858.t1 AT3G03220 53.812 223 100 2 27 247 39 260 1.94e-80 243
MS.gene021858.t1 AT1G62980 47.581 248 126 3 7 251 10 256 2.70e-80 242
MS.gene021858.t1 AT1G69530 55.172 203 87 2 6 206 5 205 1.00e-77 234
MS.gene021858.t1 AT1G69530 55.172 203 87 2 6 206 5 205 1.58e-77 234
MS.gene021858.t1 AT4G38210 42.449 245 137 2 8 248 8 252 2.21e-74 227
MS.gene021858.t1 AT3G15370 42.913 254 136 6 1 250 1 249 3.75e-67 208
MS.gene021858.t1 AT1G20190 53.368 193 85 3 63 251 2 193 2.42e-66 204
MS.gene021858.t1 AT3G15370 47.596 208 101 5 47 250 76 279 1.66e-61 195
MS.gene021858.t1 AT1G65680 32.530 249 141 11 18 251 37 273 7.85e-28 107
MS.gene021858.t1 AT4G28250 30.943 265 151 10 7 251 8 260 6.40e-27 105
MS.gene021858.t1 AT2G20750 30.435 276 158 12 1 251 1 267 1.60e-25 101
MS.gene021858.t1 AT4G28250 30.303 264 148 10 7 251 8 254 8.69e-25 99.4
MS.gene021858.t1 AT2G45110 28.992 238 138 9 31 251 36 259 1.14e-20 88.6
MS.gene021858.t1 AT1G65681 29.464 224 133 8 41 251 11 222 1.93e-20 87.0
MS.gene021858.t1 AT3G60570 26.437 261 166 7 4 251 10 257 1.69e-18 82.4
MS.gene021858.t1 AT4G17030 26.275 255 172 9 1 248 1 246 9.65e-17 77.4
MS.gene021858.t1 AT3G45970 28.767 219 122 9 47 247 15 217 1.03e-16 77.4
MS.gene021858.t1 AT4G28250 29.000 200 108 8 7 189 8 190 2.15e-14 70.5
MS.gene021858.t1 AT2G20750 29.245 212 118 10 1 189 1 203 2.27e-14 70.5
MS.gene021858.t1 AT4G28250 29.714 175 96 7 25 189 33 190 3.44e-14 69.7
MS.gene021858.t1 AT3G45970 27.907 215 121 9 51 247 46 244 4.48e-14 70.5
MS.gene021858.t1 AT3G45960 29.231 195 105 9 69 246 16 194 1.14e-12 65.9
MS.gene021858.t1 AT3G45960 28.037 214 121 9 51 247 46 243 1.37e-12 66.2

Find 66 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCAAATTGGCAATT+TGG 0.156079 7.1:-82830094 MS.gene021858:CDS
TTGGAATATCGGAACGAATT+TGG 0.227218 7.1:-82830182 MS.gene021858:CDS
GTCTAACACTTTGGTTCCTT+TGG 0.256747 7.1:-82831123 MS.gene021858:CDS
CTCCTTCAAATTGGCAATTT+GGG 0.280827 7.1:-82830093 MS.gene021858:CDS
CGTGTTCCATGCATTAAAAC+TGG 0.322549 7.1:-82830349 MS.gene021858:CDS
ATTCAGTTGCTCCTTCAAAT+TGG 0.331715 7.1:-82830102 MS.gene021858:CDS
GGTTCCCATGTCACGCAATT+GGG 0.338945 7.1:-82830212 MS.gene021858:CDS
TACGAGGAGCATCATGAAAA+AGG 0.343909 7.1:+82831100 None:intergenic
GCAGAGGGAGCTTGTGGTTA+TGG 0.345450 7.1:-82830664 MS.gene021858:intron
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.1:+82830505 None:intergenic
AGCACTGCTCTATTCAATAA+TGG 0.360305 7.1:-82830598 MS.gene021858:CDS
GCATGAGCATCGTACCAGTT+TGG 0.362111 7.1:+82831056 None:intergenic
GGGTTCCCATGTCACGCAAT+TGG 0.368675 7.1:-82830213 MS.gene021858:CDS
CGACCCTCAATGGTGCATAA+AGG 0.376417 7.1:-82830536 MS.gene021858:CDS
TCAGTGGTCTTGCTGTAATC+TGG 0.378673 7.1:+82830472 None:intergenic
CATGAGCATCGTACCAGTTT+GGG 0.381964 7.1:+82831057 None:intergenic
CAATTTGGGCAGACCTTTGA+GGG 0.397290 7.1:-82830079 MS.gene021858:CDS
TGGCTGACATTGACCCAAAC+TGG 0.401607 7.1:-82831070 MS.gene021858:CDS
GGAACACGTCGATATTTAAC+GGG 0.404956 7.1:+82830364 None:intergenic
GTGTTCAATGTTGCCAATGC+TGG 0.419882 7.1:-82830277 MS.gene021858:CDS
ACCCGCTGCATCACCGTAGA+AGG 0.421455 7.1:+82831031 None:intergenic
TGTAGTAACTTGGAATGATA+AGG 0.428245 7.1:+82830150 None:intergenic
ACAGCAAGACCACTGACATT+TGG 0.434617 7.1:-82830465 MS.gene021858:CDS
CACCCTTTATGCACCATTGA+GGG 0.435760 7.1:+82830533 None:intergenic
GACCCTCAATGGTGCATAAA+GGG 0.438140 7.1:-82830535 MS.gene021858:CDS
GATCTCTTCAAACAAGGGTA+TGG 0.441783 7.1:-82830640 MS.gene021858:CDS
GATGCTCATGCAACCTTCTA+CGG 0.442027 7.1:-82831044 MS.gene021858:CDS
AGTATCAAAGGGTCTAATAC+TGG 0.447111 7.1:-82830238 MS.gene021858:CDS
TTCCGTCGCTTGTAGTAACT+TGG 0.464659 7.1:+82830140 None:intergenic
GGGCAGACCTTTGAGGGCAA+TGG 0.465089 7.1:-82830073 MS.gene021858:CDS
GTTTCTCGTGTTAGTATCAA+AGG 0.473402 7.1:-82830250 MS.gene021858:CDS
TTCAATAATGGATTTACTTG+TGG 0.476193 7.1:-82830586 MS.gene021858:CDS
GCAATTTGGGCAGACCTTTG+AGG 0.481360 7.1:-82830080 MS.gene021858:CDS
TGCCCAAATTGCCAATTTGA+AGG 0.491435 7.1:+82830091 None:intergenic
CATGGCTATGTCTAACACTT+TGG 0.491922 7.1:-82831132 MS.gene021858:CDS
CTTGTGTCGACGACCCTCAA+TGG 0.494578 7.1:-82830546 MS.gene021858:CDS
AGGGTATGGGCTTGCAACTA+CGG 0.497920 7.1:-82830626 MS.gene021858:CDS
TGGAACACGTCGATATTTAA+CGG 0.500310 7.1:+82830363 None:intergenic
GCACCCTTTATGCACCATTG+AGG 0.509796 7.1:+82830532 None:intergenic
TTGTTGCGGTTATCGTGATA+GGG 0.519560 7.1:+82830506 None:intergenic
ACCTTCTACGGTGATGCAGC+GGG 0.524229 7.1:-82831032 MS.gene021858:CDS
GTTCCCATGTCACGCAATTG+GGG 0.527294 7.1:-82830211 MS.gene021858:CDS
AAAATTTCCATTGCCCTCAA+AGG 0.530553 7.1:+82830066 None:intergenic
ATCTCTTCAAACAAGGGTAT+GGG 0.533065 7.1:-82830639 MS.gene021858:CDS
TCAAAGGGTCTAATACTGGA+TGG 0.543308 7.1:-82830234 MS.gene021858:CDS
GGTGTTAGGTTTGAAATCAA+AGG 0.556743 7.1:-82830325 MS.gene021858:CDS
AATATCGGAACGAATTTGGT+AGG 0.565838 7.1:-82830178 MS.gene021858:CDS
GTGTTCCATGCATTAAAACT+GGG 0.567747 7.1:-82830348 MS.gene021858:CDS
ACGAGAAACATCTCCAGCAT+TGG 0.571727 7.1:+82830264 None:intergenic
TTTCTCGTGTTAGTATCAAA+GGG 0.575473 7.1:-82830249 MS.gene021858:CDS
CAAAGGGTCTAATACTGGAT+GGG 0.581086 7.1:-82830233 MS.gene021858:CDS
TATTATGCAGAGGGAGCTTG+TGG 0.589305 7.1:-82830670 MS.gene021858:intron
AACCTTCTACGGTGATGCAG+CGG 0.592492 7.1:-82831033 MS.gene021858:CDS
GATGCTCCTCGTACATGCCA+TGG 0.597328 7.1:-82831090 MS.gene021858:CDS
TATGGTGATCTCTTCAAACA+AGG 0.598795 7.1:-82830646 MS.gene021858:CDS
GTTTGGGTCAATGTCAGCCA+TGG 0.624607 7.1:+82831073 None:intergenic
TTCCAAGTTACTACAAGCGA+CGG 0.626967 7.1:-82830142 MS.gene021858:CDS
TTCCCATGTCACGCAATTGG+GGG 0.644287 7.1:-82830210 MS.gene021858:CDS
GTGGTCTTGCTGTAATCTGG+AGG 0.654551 7.1:+82830475 None:intergenic
TTCTACGGTGATGCAGCGGG+TGG 0.667920 7.1:-82831029 MS.gene021858:CDS
TGTTCCATGCATTAAAACTG+GGG 0.668445 7.1:-82830347 MS.gene021858:CDS
AGGGTTGCACCAAATGTCAG+TGG 0.668476 7.1:+82830456 None:intergenic
ATGGTGATCTCTTCAAACAA+GGG 0.669728 7.1:-82830645 MS.gene021858:CDS
TGTCAGCCATGGCATGTACG+AGG 0.669863 7.1:+82831084 None:intergenic
GTTCCATGCATTAAAACTGG+GGG 0.703952 7.1:-82830346 MS.gene021858:CDS
GAACACGTCGATATTTAACG+GGG 0.756543 7.1:+82830365 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTAGTAAATACA+AGG - chr7.1:82830333-82830352 MS.gene021858:CDS 10.0%
!!! AATTGTTTGATTTTTTTTTG+AGG - chr7.1:82830463-82830482 MS.gene021858:CDS 15.0%
! ACCAAAACAAGCAAAAAATT+AGG + chr7.1:82830899-82830918 None:intergenic 25.0%
! ATATAGTTATAACTTACGCA+TGG + chr7.1:82830196-82830215 None:intergenic 25.0%
! ATATATGGTATATTATGCAG+AGG - chr7.1:82830514-82830533 MS.gene021858:CDS 25.0%
! CCAAAACAAGCAAAAAATTA+GGG + chr7.1:82830898-82830917 None:intergenic 25.0%
! TATATGGTATATTATGCAGA+GGG - chr7.1:82830515-82830534 MS.gene021858:CDS 25.0%
!!! CTTAAATCAAAGTGTTTTTG+CGG + chr7.1:82830764-82830783 None:intergenic 25.0%
!!! TTCAATAATGGATTTACTTG+TGG - chr7.1:82830608-82830627 MS.gene021858:CDS 25.0%
TGTAGTAACTTGGAATGATA+AGG + chr7.1:82831047-82831066 None:intergenic 30.0%
TTTCTCGTGTTAGTATCAAA+GGG - chr7.1:82830945-82830964 MS.gene021858:intron 30.0%
!!! CCCTAATTTTTTGCTTGTTT+TGG - chr7.1:82830895-82830914 MS.gene021858:intron 30.0%
AAAATTTCCATTGCCCTCAA+AGG + chr7.1:82831131-82831150 None:intergenic 35.0%
AATATCGGAACGAATTTGGT+AGG - chr7.1:82831016-82831035 MS.gene021858:intron 35.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.1:82830596-82830615 MS.gene021858:CDS 35.0%
AGTATCAAAGGGTCTAATAC+TGG - chr7.1:82830956-82830975 MS.gene021858:intron 35.0%
ATGGTGATCTCTTCAAACAA+GGG - chr7.1:82830549-82830568 MS.gene021858:CDS 35.0%
ATTCAGTTGCTCCTTCAAAT+TGG - chr7.1:82831092-82831111 MS.gene021858:CDS 35.0%
ATTGAGAACAATTGCATGCA+TGG - chr7.1:82830382-82830401 MS.gene021858:CDS 35.0%
CTCCTTCAAATTGGCAATTT+GGG - chr7.1:82831101-82831120 MS.gene021858:CDS 35.0%
GTGTTCCATGCATTAAAACT+GGG - chr7.1:82830846-82830865 MS.gene021858:intron 35.0%
GTTTCTCGTGTTAGTATCAA+AGG - chr7.1:82830944-82830963 MS.gene021858:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.1:82830548-82830567 MS.gene021858:CDS 35.0%
TCTATTGCTTACGAAAAAGC+AGG - chr7.1:82830800-82830819 MS.gene021858:intron 35.0%
TGGAACACGTCGATATTTAA+CGG + chr7.1:82830834-82830853 None:intergenic 35.0%
TGTTCCATGCATTAAAACTG+GGG - chr7.1:82830847-82830866 MS.gene021858:intron 35.0%
TTGGAATATCGGAACGAATT+TGG - chr7.1:82831012-82831031 MS.gene021858:intron 35.0%
! ATCTCTTCAAACAAGGGTAT+GGG - chr7.1:82830555-82830574 MS.gene021858:CDS 35.0%
! GGTGTTAGGTTTGAAATCAA+AGG - chr7.1:82830869-82830888 MS.gene021858:intron 35.0%
!! AAATCAAAGTGTTTTTGCGG+AGG + chr7.1:82830761-82830780 None:intergenic 35.0%
!! AATCAAAGTGTTTTTGCGGA+GGG + chr7.1:82830760-82830779 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.1:82830705-82830724 None:intergenic 35.0%
!!! TGCTTTTTCGTAAGCAATAG+AGG + chr7.1:82830801-82830820 None:intergenic 35.0%
AGCATCATGAAAAAGGCCAA+AGG + chr7.1:82830090-82830109 None:intergenic 40.0%
CAAAGGGTCTAATACTGGAT+GGG - chr7.1:82830961-82830980 MS.gene021858:intron 40.0%
CGTGTTCCATGCATTAAAAC+TGG - chr7.1:82830845-82830864 MS.gene021858:intron 40.0%
GAACACGTCGATATTTAACG+GGG + chr7.1:82830832-82830851 None:intergenic 40.0%
GATCTCTTCAAACAAGGGTA+TGG - chr7.1:82830554-82830573 MS.gene021858:CDS 40.0%
GCTCCTTCAAATTGGCAATT+TGG - chr7.1:82831100-82831119 MS.gene021858:CDS 40.0%
GGAACACGTCGATATTTAAC+GGG + chr7.1:82830833-82830852 None:intergenic 40.0%
GTTCCATGCATTAAAACTGG+GGG - chr7.1:82830848-82830867 MS.gene021858:intron 40.0%
TCAAAGGGTCTAATACTGGA+TGG - chr7.1:82830960-82830979 MS.gene021858:intron 40.0%
TGCCCAAATTGCCAATTTGA+AGG + chr7.1:82831106-82831125 None:intergenic 40.0%
TGGGGGCAAAATTGGAATAT+CGG - chr7.1:82831001-82831020 MS.gene021858:intron 40.0%
TTCCAAGTTACTACAAGCGA+CGG - chr7.1:82831052-82831071 MS.gene021858:CDS 40.0%
TTGTTGCGGTTATCGTGATA+GGG + chr7.1:82830691-82830710 None:intergenic 40.0%
TTTGTTGCGGTTATCGTGAT+AGG + chr7.1:82830692-82830711 None:intergenic 40.0%
! GTCTAACACTTTGGTTCCTT+TGG - chr7.1:82830071-82830090 MS.gene021858:CDS 40.0%
!! TACGAGGAGCATCATGAAAA+AGG + chr7.1:82830097-82830116 None:intergenic 40.0%
ACAGCAAGACCACTGACATT+TGG - chr7.1:82830729-82830748 MS.gene021858:intron 45.0%
ACGAGAAACATCTCCAGCAT+TGG + chr7.1:82830933-82830952 None:intergenic 45.0%
CAATTTGGGCAGACCTTTGA+GGG - chr7.1:82831115-82831134 MS.gene021858:CDS 45.0%
CACCCTTTATGCACCATTGA+GGG + chr7.1:82830664-82830683 None:intergenic 45.0%
GACCCTCAATGGTGCATAAA+GGG - chr7.1:82830659-82830678 MS.gene021858:CDS 45.0%
GATGCTCATGCAACCTTCTA+CGG - chr7.1:82830150-82830169 MS.gene021858:CDS 45.0%
GTGTTCAATGTTGCCAATGC+TGG - chr7.1:82830917-82830936 MS.gene021858:intron 45.0%
TATTATGCAGAGGGAGCTTG+TGG - chr7.1:82830524-82830543 MS.gene021858:CDS 45.0%
TTCCGTCGCTTGTAGTAACT+TGG + chr7.1:82831057-82831076 None:intergenic 45.0%
! CATGAGCATCGTACCAGTTT+GGG + chr7.1:82830140-82830159 None:intergenic 45.0%
! TCAGTGGTCTTGCTGTAATC+TGG + chr7.1:82830725-82830744 None:intergenic 45.0%
!! ACACCCCCAGTTTTAATGCA+TGG + chr7.1:82830854-82830873 None:intergenic 45.0%
!! GCATTAAAACTGGGGGTGTT+AGG - chr7.1:82830855-82830874 MS.gene021858:intron 45.0%
!!! TGCATGGCTGCTACTTTTCT+TGG - chr7.1:82830398-82830417 MS.gene021858:CDS 45.0%
!!! CTTTTTATATAAATTATATA+TGG - chr7.1:82830499-82830518 MS.gene021858:CDS 5.0%
AACCTTCTACGGTGATGCAG+CGG - chr7.1:82830161-82830180 MS.gene021858:CDS 50.0%
AGGGTATGGGCTTGCAACTA+CGG - chr7.1:82830568-82830587 MS.gene021858:CDS 50.0%
AGGGTTGCACCAAATGTCAG+TGG + chr7.1:82830741-82830760 None:intergenic 50.0%
CACGCAATTGGGGGCAAAAT+TGG - chr7.1:82830993-82831012 MS.gene021858:intron 50.0%
CGACCCTCAATGGTGCATAA+AGG - chr7.1:82830658-82830677 MS.gene021858:CDS 50.0%
GCAATTTGGGCAGACCTTTG+AGG - chr7.1:82831114-82831133 MS.gene021858:CDS 50.0%
GCACCCTTTATGCACCATTG+AGG + chr7.1:82830665-82830684 None:intergenic 50.0%
GGTTCCCATGTCACGCAATT+GGG - chr7.1:82830982-82831001 MS.gene021858:intron 50.0%
GTTCCCATGTCACGCAATTG+GGG - chr7.1:82830983-82831002 MS.gene021858:intron 50.0%
GTTTGGGTCAATGTCAGCCA+TGG + chr7.1:82830124-82830143 None:intergenic 50.0%
TGGCTGACATTGACCCAAAC+TGG - chr7.1:82830124-82830143 MS.gene021858:CDS 50.0%
TTCCCATGTCACGCAATTGG+GGG - chr7.1:82830984-82831003 MS.gene021858:intron 50.0%
! GCATGAGCATCGTACCAGTT+TGG + chr7.1:82830141-82830160 None:intergenic 50.0%
! GTGGTCTTGCTGTAATCTGG+AGG + chr7.1:82830722-82830741 None:intergenic 50.0%
ACCTTCTACGGTGATGCAGC+GGG - chr7.1:82830162-82830181 MS.gene021858:CDS 55.0%
GATGCTCCTCGTACATGCCA+TGG - chr7.1:82830104-82830123 MS.gene021858:CDS 55.0%
GCAGAGGGAGCTTGTGGTTA+TGG - chr7.1:82830530-82830549 MS.gene021858:CDS 55.0%
GGGTTCCCATGTCACGCAAT+TGG - chr7.1:82830981-82831000 MS.gene021858:intron 55.0%
TGCCCCCAATTGCGTGACAT+GGG + chr7.1:82830989-82831008 None:intergenic 55.0%
TGTCAGCCATGGCATGTACG+AGG + chr7.1:82830113-82830132 None:intergenic 55.0%
TTGCCCCCAATTGCGTGACA+TGG + chr7.1:82830990-82831009 None:intergenic 55.0%
! CTTGTGTCGACGACCCTCAA+TGG - chr7.1:82830648-82830667 MS.gene021858:CDS 55.0%
ACCCGCTGCATCACCGTAGA+AGG + chr7.1:82830166-82830185 None:intergenic 60.0%
TTCTACGGTGATGCAGCGGG+TGG - chr7.1:82830165-82830184 MS.gene021858:CDS 60.0%
! GGGCAGACCTTTGAGGGCAA+TGG - chr7.1:82831121-82831140 MS.gene021858:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 82830063 82831153 82830063 ID=MS.gene021858
chr7.1 mRNA 82830063 82831153 82830063 ID=MS.gene021858.t1;Parent=MS.gene021858
chr7.1 exon 82831018 82831153 82831018 ID=MS.gene021858.t1.exon1;Parent=MS.gene021858.t1
chr7.1 CDS 82831018 82831153 82831018 ID=cds.MS.gene021858.t1;Parent=MS.gene021858.t1
chr7.1 exon 82830063 82830682 82830063 ID=MS.gene021858.t1.exon2;Parent=MS.gene021858.t1
chr7.1 CDS 82830063 82830682 82830063 ID=cds.MS.gene021858.t1;Parent=MS.gene021858.t1
Gene Sequence

>MS.gene021858

ATGGCTATGTCTAACACTTTGGTTCCTTTGGCCTTTTTCATGATGCTCCTCGTACATGCCATGGCTGACATTGACCCAAACTGGTACGATGCTCATGCAACCTTCTACGGTGATGCAGCGGGTGGTGAAACCATGCGTAAGTTATAACTATATTCTCTTAGAATTCTTTTTTTGAATATCAATTGTTAAATGAAGACAAGTTGTTAATAAAATTTAATAGCATATTTAAATTTAAATATACTATCAATTGTTAAAAAAAAAAATTCATAGTATATTTATTAGTAAATACAAGGTTGTCTAAATTTCATTTAAACTAAACATTGAGAACAATTGCATGCATGGCTGCTACTTTTCTTGGTAACATTGATCTCATGCACAATTATAGACAAAAATCTAGTTTAATTGTTTGATTTTTTTTTGAGGTTGTTTCATTATGCTTTTTATATAAATTATATATGGTATATTATGCAGAGGGAGCTTGTGGTTATGGTGATCTCTTCAAACAAGGGTATGGGCTTGCAACTACGGCGTTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAGATAACTTGTGTCGACGACCCTCAATGGTGCATAAAGGGTGCAAGCCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACAGCAAGACCACTGACATTTGGTGCAACCCTCCGCAAAAACACTTTGATTTAAGTTATAAAATGTTCACCTCTATTGCTTACGAAAAAGCAGGTATTGTCCCCGTTAAATATCGACGTGTTCCATGCATTAAAACTGGGGGTGTTAGGTTTGAAATCAAAGGAAACCCTAATTTTTTGCTTGTTTTGGTGTTCAATGTTGCCAATGCTGGAGATGTTTCTCGTGTTAGTATCAAAGGGTCTAATACTGGATGGGTTCCCATGTCACGCAATTGGGGGCAAAATTGGAATATCGGAACGAATTTGGTAGGACAAGCCTTATCATTCCAAGTTACTACAAGCGACGGAAAAACTTTAGAGTTAGATTCAGTTGCTCCTTCAAATTGGCAATTTGGGCAGACCTTTGAGGGCAATGGAAATTTTTAG
Protein sequence

>MS.gene021858.t1

MAMSNTLVPLAFFMMLLVHAMADIDPNWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATTALSTALFNNGFTCGACFQITCVDDPQWCIKGASPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYEKAGIVPVKYRRVPCIKTGGVRFEIKGNPNFLLVLVFNVANAGDVSRVSIKGSNTGWVPMSRNWGQNWNIGTNLVGQALSFQVTTSDGKTLELDSVAPSNWQFGQTFEGNGNF