AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021859.t1 MTR_7g013150 93.133 233 16 0 1 233 21 253 2.31e-165 456
MS.gene021859.t1 MTR_7g013140 86.638 232 31 0 2 233 20 251 1.08e-151 422
MS.gene021859.t1 MTR_7g013120 79.310 232 47 1 3 233 22 253 1.83e-139 391
MS.gene021859.t1 MTR_8g058990 74.678 233 59 0 1 233 21 253 2.20e-130 368
MS.gene021859.t1 MTR_8g464350 72.103 233 65 0 1 233 22 254 1.48e-127 361
MS.gene021859.t1 MTR_5g079950 61.435 223 84 1 10 230 33 255 6.80e-102 296
MS.gene021859.t1 MTR_3g094060 61.883 223 81 2 10 230 31 251 5.99e-100 291
MS.gene021859.t1 MTR_3g094040 62.727 220 78 2 10 227 31 248 2.51e-99 289
MS.gene021859.t1 MTR_7g061720 60.987 223 85 1 10 230 32 254 9.77e-99 288
MS.gene021859.t1 MTR_2g097030 60.538 223 86 1 10 230 34 256 1.29e-98 288
MS.gene021859.t1 MTR_5g075320 60.538 223 84 2 10 230 29 249 1.09e-96 283
MS.gene021859.t1 MTR_3g435430 61.818 220 80 2 10 227 25 242 2.88e-96 281
MS.gene021859.t1 MTR_5g041700 61.364 220 81 2 10 227 25 242 1.73e-95 280
MS.gene021859.t1 MTR_7g011060 60.360 222 80 2 9 230 25 238 3.54e-95 278
MS.gene021859.t1 MTR_4g081950 60.909 220 82 2 10 227 61 278 1.31e-94 278
MS.gene021859.t1 MTR_1g085460 60.262 229 85 4 10 233 30 257 6.77e-94 276
MS.gene021859.t1 MTR_3g466760 60.811 222 83 2 10 229 38 257 1.38e-93 275
MS.gene021859.t1 MTR_3g466790 60.811 222 83 2 10 229 32 251 3.93e-93 274
MS.gene021859.t1 MTR_4g063975 59.821 224 88 1 9 230 31 254 1.32e-92 273
MS.gene021859.t1 MTR_1g026020 57.456 228 92 3 10 233 29 255 3.49e-92 271
MS.gene021859.t1 MTR_7g111010 53.527 241 103 5 1 233 15 254 9.20e-87 258
MS.gene021859.t1 MTR_7g110990 55.459 229 96 4 10 233 12 239 1.35e-86 256
MS.gene021859.t1 MTR_6g012520 60.181 221 80 2 10 230 28 240 2.25e-85 254
MS.gene021859.t1 MTR_4g124340 52.679 224 101 3 10 230 61 282 2.49e-85 255
MS.gene021859.t1 MTR_5g011210 53.070 228 103 3 9 233 36 262 1.25e-82 247
MS.gene021859.t1 MTR_5g076950 53.125 224 102 2 9 230 40 262 2.64e-82 246
MS.gene021859.t1 MTR_0040s0140 50.885 226 109 1 7 230 29 254 9.93e-82 245
MS.gene021859.t1 MTR_4g102450 52.423 227 104 3 10 233 36 261 1.76e-79 239
MS.gene021859.t1 MTR_2g090255 49.115 226 113 1 7 230 25 250 5.04e-79 238
MS.gene021859.t1 MTR_3g064510 47.303 241 112 6 2 230 45 282 4.99e-71 219
MS.gene021859.t1 MTR_0008s0120 47.639 233 66 2 1 233 23 199 4.21e-68 208
MS.gene021859.t1 MTR_6g012500 54.369 103 47 0 128 230 176 278 1.39e-32 119
MS.gene021859.t1 MTR_2g090270 32.500 240 138 8 6 233 31 258 7.10e-32 117
MS.gene021859.t1 MTR_0122s0020 34.146 246 136 11 1 233 32 264 5.41e-31 115
MS.gene021859.t1 MTR_2g090265 31.381 239 140 8 7 233 30 256 4.55e-29 110
MS.gene021859.t1 MTR_4g028640 32.099 243 136 11 5 233 37 264 1.10e-25 101
MS.gene021859.t1 MTR_0809s0010 29.707 239 138 8 10 233 47 270 8.25e-23 94.0
MS.gene021859.t1 MTR_4g099370 30.088 226 139 9 12 228 30 245 1.15e-19 85.1
MS.gene021859.t1 MTR_0118s0070 27.778 234 143 9 15 233 53 275 2.29e-19 84.7
MS.gene021859.t1 MTR_4g075790 29.630 243 138 8 2 229 15 239 3.13e-18 81.3
MS.gene021859.t1 MTR_0122s0020 32.967 182 99 8 1 171 32 201 1.06e-17 79.0
MS.gene021859.t1 MTR_5g013440 29.258 229 145 11 13 233 32 251 8.32e-17 77.4
MS.gene021859.t1 MTR_1g085365 55.556 54 24 0 177 230 4 57 1.83e-13 63.5
MS.gene021859.t1 MTR_4g098930 27.039 233 138 10 13 229 32 248 1.84e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021859.t1 AT5G39280 67.811 233 73 1 1 233 45 275 1.44e-121 347
MS.gene021859.t1 AT5G39300 68.398 231 71 1 3 233 48 276 5.54e-121 345
MS.gene021859.t1 AT5G39270 66.234 231 76 1 3 233 51 279 1.75e-119 342
MS.gene021859.t1 AT5G39290 65.801 231 77 1 3 233 51 279 1.16e-118 339
MS.gene021859.t1 AT5G02260 64.126 223 78 1 10 230 32 254 8.27e-107 308
MS.gene021859.t1 AT5G39310 63.111 225 80 2 10 233 90 312 3.02e-104 304
MS.gene021859.t1 AT2G39700 61.435 223 84 1 10 230 31 253 5.01e-102 296
MS.gene021859.t1 AT2G37640 60.538 223 86 1 10 230 36 258 4.44e-101 294
MS.gene021859.t1 AT5G56320 62.332 223 80 2 10 230 29 249 4.63e-100 291
MS.gene021859.t1 AT5G56320 62.332 223 80 2 10 230 29 249 4.63e-100 291
MS.gene021859.t1 AT5G56320 62.332 223 80 2 10 230 29 249 2.84e-99 291
MS.gene021859.t1 AT5G05290 61.883 223 80 3 10 229 32 252 2.70e-98 287
MS.gene021859.t1 AT3G55500 59.641 223 88 1 10 230 34 256 2.77e-98 287
MS.gene021859.t1 AT2G03090 58.874 231 91 2 2 230 22 250 1.32e-97 285
MS.gene021859.t1 AT2G40610 61.304 230 84 3 3 229 23 250 1.87e-97 285
MS.gene021859.t1 AT1G69530 59.641 223 86 2 10 230 27 247 3.35e-96 282
MS.gene021859.t1 AT1G69530 60.455 220 83 2 10 227 27 244 4.79e-96 281
MS.gene021859.t1 AT1G69530 60.455 220 83 2 10 227 27 244 4.79e-96 281
MS.gene021859.t1 AT3G29030 61.468 218 77 2 10 227 38 248 2.32e-95 280
MS.gene021859.t1 AT5G39260 58.621 232 88 3 3 233 38 262 1.34e-94 278
MS.gene021859.t1 AT2G28950 58.744 223 90 1 10 230 31 253 1.79e-94 277
MS.gene021859.t1 AT2G37640 60.190 211 82 1 22 230 23 233 2.56e-94 276
MS.gene021859.t1 AT1G26770 58.120 234 93 3 2 233 18 248 1.29e-92 272
MS.gene021859.t1 AT1G26770 58.120 234 93 3 2 233 28 258 1.82e-92 272
MS.gene021859.t1 AT4G01630 54.202 238 103 4 1 233 19 255 2.68e-88 261
MS.gene021859.t1 AT1G12560 53.744 227 100 4 10 233 37 261 5.46e-87 258
MS.gene021859.t1 AT1G20190 54.425 226 98 3 12 233 28 252 4.85e-85 253
MS.gene021859.t1 AT1G69530 62.431 181 64 2 10 188 27 205 2.34e-81 243
MS.gene021859.t1 AT1G69530 62.431 181 64 2 10 188 27 205 3.17e-81 243
MS.gene021859.t1 AT1G62980 51.101 227 107 3 10 233 31 256 2.13e-80 241
MS.gene021859.t1 AT3G03220 51.339 224 106 2 9 230 39 261 6.09e-79 238
MS.gene021859.t1 AT4G38210 46.222 225 117 2 10 230 28 252 4.06e-73 223
MS.gene021859.t1 AT1G20190 53.886 193 84 3 45 233 2 193 2.38e-70 214
MS.gene021859.t1 AT3G15370 47.345 226 111 5 10 231 27 248 6.28e-70 215
MS.gene021859.t1 AT3G15370 48.309 207 99 5 29 231 76 278 4.67e-64 201
MS.gene021859.t1 AT4G28250 33.613 238 131 12 10 233 36 260 4.94e-27 105
MS.gene021859.t1 AT2G20750 33.473 239 135 10 9 233 39 267 1.40e-25 101
MS.gene021859.t1 AT1G65680 33.058 242 135 11 7 233 44 273 1.66e-25 101
MS.gene021859.t1 AT2G45110 31.064 235 137 7 13 233 36 259 3.05e-25 100
MS.gene021859.t1 AT4G28250 32.911 237 128 12 10 233 36 254 3.50e-25 99.8
MS.gene021859.t1 AT1G65681 31.390 223 130 7 23 233 11 222 1.55e-24 97.4
MS.gene021859.t1 AT3G60570 29.114 237 142 7 10 233 34 257 3.89e-21 89.4
MS.gene021859.t1 AT3G60570 27.982 218 131 7 29 233 5 209 2.16e-17 78.2
MS.gene021859.t1 AT3G45970 31.507 219 116 9 29 229 15 217 2.46e-17 78.6
MS.gene021859.t1 AT3G45970 30.698 215 115 9 33 229 46 244 1.05e-14 71.6
MS.gene021859.t1 AT4G17030 27.948 229 142 9 12 229 29 245 1.37e-14 71.2
MS.gene021859.t1 AT4G38400 28.972 214 119 9 33 229 47 244 2.98e-14 70.5
MS.gene021859.t1 AT2G20750 31.034 174 100 7 9 171 39 203 1.91e-13 67.4
MS.gene021859.t1 AT3G45960 30.928 194 115 8 46 229 11 195 2.12e-13 67.4
MS.gene021859.t1 AT3G45960 29.952 207 126 8 33 229 46 243 2.80e-13 67.8

Find 56 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTATTTCTTTCTAGTTT+TGG 0.167496 7.1:-82793006 MS.gene021859:CDS
GTTTCTCATGTGAGTATTAA+AGG 0.187238 7.1:-82792957 MS.gene021859:CDS
TTGGACTCCTGGATCTAATT+TGG 0.205804 7.1:-82792889 MS.gene021859:CDS
ACTCGAAGACCACCGATATT+TGG 0.251454 7.1:-82793172 MS.gene021859:CDS
CTAGCAGCATTGACTTAAAA+TGG 0.283683 7.1:-82793931 MS.gene021859:CDS
CACGCAATTGGGGACAAAAT+TGG 0.290938 7.1:-82792908 MS.gene021859:CDS
GATGCTCATGCAACCTTCTA+TGG 0.306725 7.1:-82793905 MS.gene021859:CDS
GACGATACCCGCTTTGTAAT+AGG 0.307398 7.1:+82793094 None:intergenic
ACCAAAACTAGAAAGAAATA+AGG 0.323292 7.1:+82793005 None:intergenic
GATCTCTTCAAACAAGGATA+TGG 0.334674 7.1:-82793347 MS.gene021859:CDS
GGATTTCAATGTCACGCAAT+TGG 0.349848 7.1:-82792920 MS.gene021859:CDS
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.1:+82793212 None:intergenic
GATTTCAATGTCACGCAATT+GGG 0.361470 7.1:-82792919 MS.gene021859:CDS
GCTCCTTCCAATTGGCAATT+CGG 0.369924 7.1:-82792801 MS.gene021859:CDS
TGACCCTCAATGGTGCATAA+AGG 0.378680 7.1:-82793243 MS.gene021859:CDS
GGAACACGTCGATATTTAAC+GGG 0.404956 7.1:+82793071 None:intergenic
AGCACTGCTCTATTCAATAA+TGG 0.405779 7.1:-82793305 MS.gene021859:CDS
ACCAGCTGCGTCACCATAGA+AGG 0.408935 7.1:+82793892 None:intergenic
GACCCTCAATGGTGCATAAA+GGG 0.421670 7.1:-82793242 MS.gene021859:CDS
CCAAAACTAGAAAGAAATAA+GGG 0.436817 7.1:+82793006 None:intergenic
ATTCGGTTGCTCCTTCCAAT+TGG 0.443039 7.1:-82792809 MS.gene021859:CDS
TCGGTGGTCTTCGAGTAATC+TGG 0.456534 7.1:+82793179 None:intergenic
TGGGGACAAAATTGGACTCC+TGG 0.464996 7.1:-82792900 MS.gene021859:CDS
CGCTTTGTAATAGGCAATAG+AGG 0.479013 7.1:+82793103 None:intergenic
CACCCTTTATGCACCATTGA+GGG 0.490477 7.1:+82793240 None:intergenic
GTGTACAATGTTGCCAATGC+TGG 0.492882 7.1:-82792984 MS.gene021859:CDS
ACCTTCTATGGTGACGCAGC+TGG 0.497545 7.1:-82793893 MS.gene021859:CDS
TGGAACACGTCGATATTTAA+CGG 0.500310 7.1:+82793070 None:intergenic
TTTCAAGTTAGTACAAGTGA+TGG 0.513224 7.1:-82792849 MS.gene021859:CDS
TTAAAGGTTCTAAGACTCGT+TGG 0.517546 7.1:-82792941 MS.gene021859:CDS
GGTGTTAGATTTGAGATCAA+AGG 0.518196 7.1:-82793032 MS.gene021859:CDS
GCACCCTTTATGCACCATTG+AGG 0.523652 7.1:+82793239 None:intergenic
TTGTTGCGGTTATCGTGATA+GGG 0.528029 7.1:+82793213 None:intergenic
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.1:+82792971 None:intergenic
ACTCCTGGATCTAATTTGGC+AGG 0.531504 7.1:-82792885 MS.gene021859:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.536521 7.1:-82793056 MS.gene021859:CDS
TGTCCTGCCAAATTAGATCC+AGG 0.540402 7.1:+82792882 None:intergenic
GGTCTGTCCGAATTGCCAAT+TGG 0.540731 7.1:+82792794 None:intergenic
TCTATTGCCTATTACAAAGC+GGG 0.545418 7.1:-82793101 MS.gene021859:CDS
CGGACAGACCTACGAGGCCA+AGG 0.553109 7.1:-82792781 MS.gene021859:CDS
AAAATTTCCCTTGGCCTCGT+AGG 0.559321 7.1:+82792773 None:intergenic
ATTTCAATGTCACGCAATTG+GGG 0.575683 7.1:-82792918 MS.gene021859:CDS
TTTGTGTCAATGACCCTCAA+TGG 0.594219 7.1:-82793253 MS.gene021859:CDS
TTCAATAATGGACTTACATG+TGG 0.594769 7.1:-82793293 MS.gene021859:CDS
TGTCCGAATTGCCAATTGGA+AGG 0.611958 7.1:+82792798 None:intergenic
TTCTATGGTGACGCAGCTGG+TGG 0.617803 7.1:-82793890 MS.gene021859:CDS
TGTACTAACTTGAAACGACA+AGG 0.644222 7.1:+82792857 None:intergenic
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.1:-82793353 MS.gene021859:CDS
GGACAGACCTACGAGGCCAA+GGG 0.653538 7.1:-82792780 MS.gene021859:CDS
CTCTATTGCCTATTACAAAG+CGG 0.658778 7.1:-82793102 MS.gene021859:CDS
GTTCCATGCATCAAAAGTGG+AGG 0.667109 7.1:-82793053 MS.gene021859:CDS
GTGGTCTTCGAGTAATCTGG+AGG 0.686927 7.1:+82793182 None:intergenic
TAGAGCAGTGCTTAGTGCTG+CGG 0.687375 7.1:+82793316 None:intergenic
GGGATTACACCAAATATCGG+TGG 0.692962 7.1:+82793163 None:intergenic
GAACACGTCGATATTTAACG+GGG 0.756543 7.1:+82793072 None:intergenic
GCAATTCGGACAGACCTACG+AGG 0.774781 7.1:-82792787 MS.gene021859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTTTTATTTGTGTA+CGG + chr7.1:82793268-82793287 None:intergenic 10.0%
!!! TATTGTTTTTATATGATATA+TGG - chr7.1:82793303-82793322 MS.gene021859:CDS 10.0%
!!! TGAATATGAATTTTTTATAT+TGG + chr7.1:82793108-82793127 None:intergenic 10.0%
!!! AAAAACTTTAACGTTTTATT+CGG - chr7.1:82793882-82793901 MS.gene021859:CDS 15.0%
!!! AAGATAACTTGTAAAAAAAA+AGG + chr7.1:82792876-82792895 None:intergenic 15.0%
!!! AATTTTTTATATTGGTGTAT+CGG + chr7.1:82793100-82793119 None:intergenic 15.0%
!!! TTTTTTAATGATAGATCAAA+TGG - chr7.1:82793194-82793213 MS.gene021859:CDS 15.0%
!! TTTGTGATTGTATATTGTTA+TGG + chr7.1:82792936-82792955 None:intergenic 20.0%
! ACCAAAACTAGAAAGAAATA+AGG + chr7.1:82793706-82793725 None:intergenic 25.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.1:82793322-82793341 MS.gene021859:CDS 25.0%
! CCAAAACTAGAAAGAAATAA+GGG + chr7.1:82793705-82793724 None:intergenic 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.1:82793321-82793340 MS.gene021859:CDS 25.0%
! TTAGTTTAATAACTTACGCA+TGG + chr7.1:82792849-82792868 None:intergenic 25.0%
GTTTCTCATGTGAGTATTAA+AGG - chr7.1:82793751-82793770 MS.gene021859:intron 30.0%
TATATTGGTGTATCGGATAT+AGG + chr7.1:82793093-82793112 None:intergenic 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.1:82793323-82793342 MS.gene021859:CDS 30.0%
TTTATTTGTGTACGGACATA+TGG + chr7.1:82793260-82793279 None:intergenic 30.0%
!! CTTAAATCGAAGTGTTTTTG+CGG + chr7.1:82793571-82793590 None:intergenic 30.0%
!! TTAAATCGAAGTGTTTTTGC+GGG + chr7.1:82793570-82793589 None:intergenic 30.0%
!! TTCAATAATGGACTTACATG+TGG - chr7.1:82793415-82793434 MS.gene021859:intron 30.0%
!! TTTCAAGTTAGTACAAGTGA+TGG - chr7.1:82793859-82793878 MS.gene021859:intron 30.0%
!!! CCCTTATTTCTTTCTAGTTT+TGG - chr7.1:82793702-82793721 MS.gene021859:intron 30.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.1:82793403-82793422 MS.gene021859:intron 35.0%
ATTTCAATGTCACGCAATTG+GGG - chr7.1:82793790-82793809 MS.gene021859:intron 35.0%
CTCTATTGCCTATTACAAAG+CGG - chr7.1:82793606-82793625 MS.gene021859:intron 35.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.1:82793361-82793380 MS.gene021859:CDS 35.0%
GATTTCAATGTCACGCAATT+GGG - chr7.1:82793789-82793808 MS.gene021859:intron 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.1:82793324-82793343 MS.gene021859:CDS 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.1:82793355-82793374 MS.gene021859:CDS 35.0%
TCTATTGCCTATTACAAAGC+GGG - chr7.1:82793607-82793626 MS.gene021859:intron 35.0%
TGGAACACGTCGATATTTAA+CGG + chr7.1:82793641-82793660 None:intergenic 35.0%
TGTACTAACTTGAAACGACA+AGG + chr7.1:82793854-82793873 None:intergenic 35.0%
! GGTGTTAGATTTGAGATCAA+AGG - chr7.1:82793676-82793695 MS.gene021859:intron 35.0%
!! CTAGCAGCATTGACTTAAAA+TGG - chr7.1:82792777-82792796 MS.gene021859:CDS 35.0%
!! TAAATCGAAGTGTTTTTGCG+GGG + chr7.1:82793569-82793588 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.1:82793512-82793531 None:intergenic 35.0%
!! TTAAAGGTTCTAAGACTCGT+TGG - chr7.1:82793767-82793786 MS.gene021859:intron 35.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.1:82793740-82793759 None:intergenic 40.0%
CGCTTTGTAATAGGCAATAG+AGG + chr7.1:82793608-82793627 None:intergenic 40.0%
GAACACGTCGATATTTAACG+GGG + chr7.1:82793639-82793658 None:intergenic 40.0%
GGAACACGTCGATATTTAAC+GGG + chr7.1:82793640-82793659 None:intergenic 40.0%
GGATTTCAATGTCACGCAAT+TGG - chr7.1:82793788-82793807 MS.gene021859:intron 40.0%
TTGGACTCCTGGATCTAATT+TGG - chr7.1:82793819-82793838 MS.gene021859:intron 40.0%
TTGTTGCGGTTATCGTGATA+GGG + chr7.1:82793498-82793517 None:intergenic 40.0%
TTTGTGTCAATGACCCTCAA+TGG - chr7.1:82793455-82793474 MS.gene021859:intron 40.0%
TTTGTTGCGGTTATCGTGAT+AGG + chr7.1:82793499-82793518 None:intergenic 40.0%
!! AAATCGAAGTGTTTTTGCGG+GGG + chr7.1:82793568-82793587 None:intergenic 40.0%
AAAATTTCCCTTGGCCTCGT+AGG + chr7.1:82793938-82793957 None:intergenic 45.0%
ACTCCTGGATCTAATTTGGC+AGG - chr7.1:82793823-82793842 MS.gene021859:intron 45.0%
ACTCGAAGACCACCGATATT+TGG - chr7.1:82793536-82793555 MS.gene021859:intron 45.0%
ATTCGGTTGCTCCTTCCAAT+TGG - chr7.1:82793899-82793918 MS.gene021859:CDS 45.0%
CACCCTTTATGCACCATTGA+GGG + chr7.1:82793471-82793490 None:intergenic 45.0%
CACGCAATTGGGGACAAAAT+TGG - chr7.1:82793800-82793819 MS.gene021859:intron 45.0%
CGGGGGATTACACCAAATAT+CGG + chr7.1:82793551-82793570 None:intergenic 45.0%
CGTGTTCCATGCATCAAAAG+TGG - chr7.1:82793652-82793671 MS.gene021859:intron 45.0%
GACCCTCAATGGTGCATAAA+GGG - chr7.1:82793466-82793485 MS.gene021859:intron 45.0%
GACGATACCCGCTTTGTAAT+AGG + chr7.1:82793617-82793636 None:intergenic 45.0%
GATGCTCATGCAACCTTCTA+TGG - chr7.1:82792803-82792822 MS.gene021859:CDS 45.0%
GCTCCTTCCAATTGGCAATT+CGG - chr7.1:82793907-82793926 MS.gene021859:CDS 45.0%
GGGATTACACCAAATATCGG+TGG + chr7.1:82793548-82793567 None:intergenic 45.0%
GTGTACAATGTTGCCAATGC+TGG - chr7.1:82793724-82793743 MS.gene021859:intron 45.0%
GTTCCATGCATCAAAAGTGG+AGG - chr7.1:82793655-82793674 MS.gene021859:intron 45.0%
TGACCCTCAATGGTGCATAA+AGG - chr7.1:82793465-82793484 MS.gene021859:intron 45.0%
TGTCCGAATTGCCAATTGGA+AGG + chr7.1:82793913-82793932 None:intergenic 45.0%
TGTCCTGCCAAATTAGATCC+AGG + chr7.1:82793829-82793848 None:intergenic 45.0%
!! ACACCTCCACTTTTGATGCA+TGG + chr7.1:82793661-82793680 None:intergenic 45.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.1:82793331-82793350 MS.gene021859:CDS 50.0%
GCACCCTTTATGCACCATTG+AGG + chr7.1:82793472-82793491 None:intergenic 50.0%
GGTCTGTCCGAATTGCCAAT+TGG + chr7.1:82793917-82793936 None:intergenic 50.0%
GTGGTCTTCGAGTAATCTGG+AGG + chr7.1:82793529-82793548 None:intergenic 50.0%
TAGAGCAGTGCTTAGTGCTG+CGG + chr7.1:82793395-82793414 None:intergenic 50.0%
TCGGTGGTCTTCGAGTAATC+TGG + chr7.1:82793532-82793551 None:intergenic 50.0%
TGGGGACAAAATTGGACTCC+TGG - chr7.1:82793808-82793827 MS.gene021859:intron 50.0%
ACCAGCTGCGTCACCATAGA+AGG + chr7.1:82792819-82792838 None:intergenic 55.0%
GCAATTCGGACAGACCTACG+AGG - chr7.1:82793921-82793940 MS.gene021859:CDS 55.0%
! ACCTTCTATGGTGACGCAGC+TGG - chr7.1:82792815-82792834 MS.gene021859:CDS 55.0%
! TTCTATGGTGACGCAGCTGG+TGG - chr7.1:82792818-82792837 MS.gene021859:CDS 55.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.1:82793337-82793356 MS.gene021859:CDS 60.0%
GGACAGACCTACGAGGCCAA+GGG - chr7.1:82793928-82793947 MS.gene021859:CDS 60.0%
CGGACAGACCTACGAGGCCA+AGG - chr7.1:82793927-82793946 MS.gene021859:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 82792770 82793960 82792770 ID=MS.gene021859
chr7.1 mRNA 82792770 82793960 82792770 ID=MS.gene021859.t1;Parent=MS.gene021859
chr7.1 exon 82793879 82793960 82793879 ID=MS.gene021859.t1.exon1;Parent=MS.gene021859.t1
chr7.1 CDS 82793879 82793960 82793879 ID=cds.MS.gene021859.t1;Parent=MS.gene021859.t1
chr7.1 exon 82792770 82793389 82792770 ID=MS.gene021859.t1.exon2;Parent=MS.gene021859.t1
chr7.1 CDS 82792770 82793389 82792770 ID=cds.MS.gene021859.t1;Parent=MS.gene021859.t1
Gene Sequence

>MS.gene021859

ATGTCAACTAGCAGCATTGACTTAAAATGGTACGATGCTCATGCAACCTTCTATGGTGACGCAGCTGGTGGTGAAACCATGCGTAAGTTATTAAACTAATCTTCCTTTTTTTTTACAAGTTATCTTTTAATGATATATCATACACATTTAATTTAGACTCTTACCATAACAATATACAATCACAAATCTAGTTTTTAAATAAAGATCAGATTACTTATATAATTCATAATGTATTTTGATGTAGATATGATGAAATCAATATGTATCGCATGCAAGCTTTGCAATGCATATGATTGTCACATTTTTTTTTTTTTATGAAACCTATATCCGATACACCAATATAAAAAATTCATATTCAATAATTTCATTGTTTTTTATACAATATTTAAAAATTGTTTTTTAATGATAGATCATTTAAAAATTGTTTTTTAATGATAGATCAAATGGCATATATATTTCATAATATTTGAAGTAGATATGATGAAATCCATATGTCCGTACACAAATAAAAAATTAATATTCAATTATTATTGTATTGTTTTTATATGATATATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACCGCAGCACTAAGCACTGCTCTATTCAATAATGGACTTACATGTGGTGCTTGCTTTCAAATAATTTGTGTCAATGACCCTCAATGGTGCATAAAGGGTGCACACCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACTCGAAGACCACCGATATTTGGTGTAATCCCCCGCAAAAACACTTCGATTTAAGCTATAAAATGTTCACCTCTATTGCCTATTACAAAGCGGGTATCGTCCCCGTTAAATATCGACGTGTTCCATGCATCAAAAGTGGAGGTGTTAGATTTGAGATCAAAGGAAACCCTTATTTCTTTCTAGTTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTCATGTGAGTATTAAAGGTTCTAAGACTCGTTGGATTTCAATGTCACGCAATTGGGGACAAAATTGGACTCCTGGATCTAATTTGGCAGGACAAGCCTTGTCGTTTCAAGTTAGTACAAGTGATGGAAAAACTTTAACGTTTTATTCGGTTGCTCCTTCCAATTGGCAATTCGGACAGACCTACGAGGCCAAGGGAAATTTTTAG
Protein sequence

>MS.gene021859.t1

MSTSSIDLKWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFQIICVNDPQWCIKGAHPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGIVPVKYRRVPCIKSGGVRFEIKGNPYFFLVLVYNVANAGDVSHVSIKGSKTRWISMSRNWGQNWTPGSNLAGQALSFQVSTSDGKTLTFYSVAPSNWQFGQTYEAKGNF