Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022269.t1 | XP_013461036.1 | 97.8 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 4.40E-232 | 813.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022269.t1 | O48716 | 40.4 | 270 | 145 | 4 | 140 | 409 | 165 | 418 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022269.t1 | A0A072VA53 | 97.8 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 3.2e-232 | 813.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006731 | MS.gene022269 | PPI |
| MS.gene022269 | MS.gene045436 | PPI |
| MS.gene022269 | MS.gene070758 | PPI |
| MS.gene070761 | MS.gene022269 | PPI |
| MS.gene070760 | MS.gene022269 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022269.t1 | MTR_3g078380 | 97.831 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 0.0 | 824 |
| MS.gene022269.t1 | MTR_4g106480 | 61.502 | 426 | 127 | 10 | 1 | 414 | 1 | 401 | 5.90e-167 | 474 |
| MS.gene022269.t1 | MTR_5g035980 | 51.214 | 412 | 156 | 13 | 37 | 414 | 48 | 448 | 1.81e-125 | 370 |
| MS.gene022269.t1 | MTR_8g089650 | 45.128 | 390 | 186 | 12 | 30 | 411 | 61 | 430 | 9.47e-101 | 307 |
| MS.gene022269.t1 | MTR_4g104410 | 40.452 | 398 | 186 | 13 | 17 | 410 | 14 | 364 | 8.79e-82 | 256 |
| MS.gene022269.t1 | MTR_1g021590 | 37.561 | 410 | 218 | 12 | 3 | 409 | 57 | 431 | 2.81e-77 | 247 |
| MS.gene022269.t1 | MTR_5g018520 | 39.655 | 348 | 173 | 11 | 69 | 409 | 102 | 419 | 2.06e-75 | 242 |
| MS.gene022269.t1 | MTR_4g068457 | 39.067 | 343 | 188 | 9 | 69 | 409 | 133 | 456 | 2.57e-71 | 233 |
| MS.gene022269.t1 | MTR_2g060070 | 37.337 | 383 | 203 | 14 | 33 | 412 | 34 | 382 | 6.03e-67 | 219 |
| MS.gene022269.t1 | MTR_3g110185 | 34.153 | 366 | 201 | 13 | 53 | 411 | 79 | 411 | 8.92e-49 | 177 |
| MS.gene022269.t1 | MTR_2g101410 | 32.828 | 396 | 221 | 13 | 29 | 409 | 42 | 407 | 3.12e-48 | 170 |
| MS.gene022269.t1 | MTR_7g086360 | 24.771 | 327 | 182 | 12 | 55 | 372 | 48 | 319 | 1.82e-12 | 68.6 |
| MS.gene022269.t1 | MTR_4g105700 | 26.449 | 276 | 171 | 13 | 114 | 372 | 327 | 587 | 8.60e-12 | 67.8 |
| MS.gene022269.t1 | MTR_1g090827 | 26.214 | 206 | 115 | 4 | 176 | 357 | 88 | 280 | 2.09e-11 | 66.6 |
| MS.gene022269.t1 | MTR_4g071130 | 27.861 | 201 | 118 | 6 | 176 | 357 | 88 | 280 | 2.79e-11 | 66.2 |
| MS.gene022269.t1 | MTR_3g088545 | 28.829 | 222 | 121 | 10 | 193 | 408 | 97 | 287 | 2.86e-11 | 65.1 |
| MS.gene022269.t1 | MTR_4g119620 | 29.500 | 200 | 113 | 9 | 211 | 407 | 15 | 189 | 6.72e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022269.t1 | AT5G50120 | 56.720 | 372 | 135 | 8 | 55 | 413 | 30 | 388 | 2.72e-140 | 406 |
| MS.gene022269.t1 | AT1G24130 | 54.359 | 390 | 147 | 12 | 37 | 414 | 45 | 415 | 3.56e-123 | 363 |
| MS.gene022269.t1 | AT1G24530 | 45.407 | 381 | 181 | 11 | 32 | 411 | 51 | 405 | 1.12e-96 | 296 |
| MS.gene022269.t1 | AT2G26490 | 41.228 | 342 | 176 | 7 | 69 | 409 | 101 | 418 | 9.06e-78 | 248 |
| MS.gene022269.t1 | AT2G26490 | 26.374 | 273 | 151 | 9 | 39 | 302 | 185 | 416 | 9.99e-11 | 63.9 |
| MS.gene022269.t1 | AT3G18950 | 39.276 | 359 | 191 | 9 | 54 | 409 | 130 | 464 | 4.87e-74 | 239 |
| MS.gene022269.t1 | AT3G50390 | 38.040 | 347 | 184 | 11 | 69 | 409 | 103 | 424 | 1.99e-71 | 232 |
| MS.gene022269.t1 | AT1G49450 | 38.286 | 350 | 185 | 9 | 69 | 409 | 139 | 466 | 5.99e-71 | 231 |
| MS.gene022269.t1 | AT3G51930 | 38.158 | 380 | 195 | 14 | 45 | 412 | 44 | 395 | 4.30e-67 | 219 |
| MS.gene022269.t1 | AT4G34380 | 35.949 | 395 | 219 | 11 | 24 | 409 | 87 | 456 | 9.51e-67 | 221 |
| MS.gene022269.t1 | AT1G47610 | 37.500 | 344 | 188 | 9 | 69 | 409 | 29 | 348 | 1.15e-66 | 216 |
| MS.gene022269.t1 | AT1G21650 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 4.72e-12 | 68.6 |
| MS.gene022269.t1 | AT1G21651 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 4.94e-12 | 68.6 |
| MS.gene022269.t1 | AT2G43770 | 24.405 | 336 | 187 | 13 | 49 | 372 | 37 | 317 | 8.25e-12 | 66.6 |
| MS.gene022269.t1 | AT3G49660 | 20.950 | 358 | 212 | 12 | 57 | 407 | 19 | 312 | 1.45e-11 | 65.5 |
| MS.gene022269.t1 | AT5G50230 | 24.820 | 278 | 160 | 11 | 98 | 352 | 215 | 466 | 3.67e-11 | 65.1 |
| MS.gene022269.t1 | AT1G48630 | 28.270 | 237 | 122 | 9 | 77 | 307 | 31 | 225 | 6.25e-11 | 63.5 |
| MS.gene022269.t1 | AT4G02730 | 29.801 | 151 | 80 | 5 | 261 | 409 | 31 | 157 | 9.90e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGTTTGTCTATTT+TGG | 0.194004 | 3.3:-66414354 | MS.gene022269:CDS |
| CTGATAAAACCATAAGAATT+TGG | 0.253308 | 3.3:-66414394 | MS.gene022269:CDS |
| TACCTTCAACCTCAACAATT+AGG | 0.263211 | 3.3:-66415379 | MS.gene022269:CDS |
| AACTAAAGATTTCACTTGTT+TGG | 0.280735 | 3.3:-66414801 | MS.gene022269:CDS |
| AACACCCCTCCAAATTCTTA+TGG | 0.289644 | 3.3:+66414385 | None:intergenic |
| TAGTTTGGACTGTGACATTA+AGG | 0.303285 | 3.3:-66414234 | MS.gene022269:CDS |
| GGTTGTTGTGTCTTCTTCAT+AGG | 0.314132 | 3.3:+66415150 | None:intergenic |
| TCCTGCTATTACTTTGTTGT+TGG | 0.317202 | 3.3:+66415129 | None:intergenic |
| AGCGACGACAACGACGAAAA+TGG | 0.332042 | 3.3:-66414506 | MS.gene022269:CDS |
| TTTAGTCTATAGTGGTAGTT+TGG | 0.333469 | 3.3:-66414249 | MS.gene022269:CDS |
| TCCCTTGCTCTTTCTAAAGA+TGG | 0.347660 | 3.3:-66414872 | MS.gene022269:CDS |
| GTGGGAAGTGTGGTTGATGT+GGG | 0.370823 | 3.3:+66415291 | None:intergenic |
| CAATTCTGGTATCAATGCTT+TGG | 0.382949 | 3.3:-66414606 | MS.gene022269:CDS |
| ACCTTCAACCTCAACAATTA+GGG | 0.384929 | 3.3:-66415378 | MS.gene022269:CDS |
| TTTGTTTGATTGAATTACTA+AGG | 0.389364 | 3.3:+66415090 | None:intergenic |
| TGCTTGTGATAGATCAATAT+TGG | 0.389864 | 3.3:-66414549 | MS.gene022269:CDS |
| AGAGTTGTTGTGGGATTTGA+GGG | 0.409026 | 3.3:+66415258 | None:intergenic |
| GCGGTTGTTGTTTCTTATGA+TGG | 0.416238 | 3.3:-66414743 | MS.gene022269:CDS |
| GGGACAGAACAATCAAAATC+TGG | 0.425270 | 3.3:-66414826 | MS.gene022269:CDS |
| ACCTTGGAGAAACACAATTC+TGG | 0.431617 | 3.3:-66414620 | MS.gene022269:CDS |
| GGGATTGTGACGAGGGTTGA+GGG | 0.435180 | 3.3:+66415312 | None:intergenic |
| GTTCTGGTTGGTGCATTAAG+AGG | 0.438267 | 3.3:-66414476 | MS.gene022269:CDS |
| AAGAGTTGTTGTGGGATTTG+AGG | 0.442653 | 3.3:+66415257 | None:intergenic |
| GTGATAGATCAATATTGGTA+TGG | 0.453135 | 3.3:-66414544 | MS.gene022269:CDS |
| CCATGTTGTGATTTCTCTGT+CGG | 0.456976 | 3.3:+66415183 | None:intergenic |
| ACATTCCCTTGTTGATACCT+TGG | 0.457002 | 3.3:-66414636 | MS.gene022269:CDS |
| GGGGATTGTGACGAGGGTTG+AGG | 0.459466 | 3.3:+66415311 | None:intergenic |
| ACCCTAATTGTTGAGGTTGA+AGG | 0.465908 | 3.3:+66415377 | None:intergenic |
| GAGAGTGAGAGAGGATGTGT+AGG | 0.475277 | 3.3:+66415234 | None:intergenic |
| CAACAAAGTAATAGCAGGAA+AGG | 0.477780 | 3.3:-66415125 | MS.gene022269:CDS |
| GATGAATCTATTCTATATTC+CGG | 0.478003 | 3.3:-66414572 | MS.gene022269:CDS |
| TTCGGTAAATTCCTCCTCAC+TGG | 0.482358 | 3.3:-66415211 | MS.gene022269:CDS |
| AAGACCATAAAATCCGTGTC+TGG | 0.486087 | 3.3:-66415045 | MS.gene022269:CDS |
| GGTGGGAAGTGTGGTTGATG+TGG | 0.489772 | 3.3:+66415290 | None:intergenic |
| ATTGTTGAGGTTGAAGGTAG+TGG | 0.497025 | 3.3:+66415383 | None:intergenic |
| TGGACTGTGACATTAAGGTT+TGG | 0.498273 | 3.3:-66414229 | MS.gene022269:CDS |
| ACATCCTCTCTCACTCTCTT+CGG | 0.500584 | 3.3:-66415229 | MS.gene022269:CDS |
| TTCCATCTTTAGAAAGAGCA+AGG | 0.503229 | 3.3:+66414870 | None:intergenic |
| GGTCTTGATGAGCACTGAAA+AGG | 0.506634 | 3.3:+66415062 | None:intergenic |
| GGTAGAATAATTTAGATAGC+AGG | 0.511696 | 3.3:+66414194 | None:intergenic |
| TATTGTGTTTAGCTGTTGTG+TGG | 0.515512 | 3.3:-66414439 | MS.gene022269:CDS |
| TGATGTGGGGATTGTGACGA+GGG | 0.520065 | 3.3:+66415305 | None:intergenic |
| TGGGAAGTGTGGTTGATGTG+GGG | 0.523842 | 3.3:+66415292 | None:intergenic |
| TATAGCATCATCGTGTGCGT+TGG | 0.524899 | 3.3:+66414769 | None:intergenic |
| AAAGTGTGGAAGAATCTTCA+AGG | 0.525692 | 3.3:-66414686 | MS.gene022269:CDS |
| ATAAGAATTTGGAGGGGTGT+TGG | 0.529006 | 3.3:-66414383 | MS.gene022269:CDS |
| TTGATGTGGGGATTGTGACG+AGG | 0.538964 | 3.3:+66415304 | None:intergenic |
| TGTGTAGGAAGAGTTGTTGT+GGG | 0.543920 | 3.3:+66415249 | None:intergenic |
| GGAGGCTGCGTTGTGAAGTG+AGG | 0.545239 | 3.3:+66415347 | None:intergenic |
| GTAGTGGTTGGAGTGAGATG+AGG | 0.547014 | 3.3:+66415399 | None:intergenic |
| TTGAGGTTGAAGGTAGTGGT+TGG | 0.548826 | 3.3:+66415387 | None:intergenic |
| CGTTGGTTAATTTCCAGACA+CGG | 0.549331 | 3.3:+66415032 | None:intergenic |
| TATTGATCTATCACAAGCAC+CGG | 0.554977 | 3.3:+66414553 | None:intergenic |
| TTATGATGAGGTGGGAAGTG+TGG | 0.555083 | 3.3:+66415281 | None:intergenic |
| TGATAGATCAATATTGGTAT+GGG | 0.557167 | 3.3:-66414543 | MS.gene022269:CDS |
| ATTGTGTTTAGCTGTTGTGT+GGG | 0.558122 | 3.3:-66414438 | MS.gene022269:CDS |
| TAAAACCATAAGAATTTGGA+GGG | 0.559125 | 3.3:-66414390 | MS.gene022269:CDS |
| ACCAACAACAAAGTAATAGC+AGG | 0.559319 | 3.3:-66415130 | MS.gene022269:CDS |
| TTTACCGAAGAGAGTGAGAG+AGG | 0.559757 | 3.3:+66415225 | None:intergenic |
| AACAAAGTAATAGCAGGAAA+GGG | 0.563035 | 3.3:-66415124 | MS.gene022269:CDS |
| TTGTGACGAGGGTTGAGGGA+AGG | 0.567186 | 3.3:+66415316 | None:intergenic |
| GAAGCACGGTCACCAAGTGT+TGG | 0.569276 | 3.3:+66414977 | None:intergenic |
| ACCAGAATTGTGTTTCTCCA+AGG | 0.570524 | 3.3:+66414619 | None:intergenic |
| ATAAAACCATAAGAATTTGG+AGG | 0.571975 | 3.3:-66414391 | MS.gene022269:CDS |
| TTTGAGGGTTATGATGAGGT+GGG | 0.572272 | 3.3:+66415273 | None:intergenic |
| TGTTGTGTCTTCTTCATAGG+TGG | 0.573502 | 3.3:+66415153 | None:intergenic |
| GAGGCTGCGTTGTGAAGTGA+GGG | 0.579525 | 3.3:+66415348 | None:intergenic |
| TGTGTCTACGAATTTGGACA+TGG | 0.587510 | 3.3:+66414933 | None:intergenic |
| GTCTTGATGAGCACTGAAAA+GGG | 0.588648 | 3.3:+66415063 | None:intergenic |
| ATGCACGTGGGTTCATCATG+TGG | 0.591120 | 3.3:-66414906 | MS.gene022269:CDS |
| GGGATTTGAGGGTTATGATG+AGG | 0.594826 | 3.3:+66415269 | None:intergenic |
| ATTTGAGGGTTATGATGAGG+TGG | 0.595558 | 3.3:+66415272 | None:intergenic |
| ATGTGTAGGAAGAGTTGTTG+TGG | 0.597938 | 3.3:+66415248 | None:intergenic |
| GTAGCAACACTTCCAACACT+TGG | 0.604456 | 3.3:-66414989 | MS.gene022269:CDS |
| TCCATCTTTAGAAAGAGCAA+GGG | 0.605319 | 3.3:+66414871 | None:intergenic |
| GAGGTTGACCCTAATTGTTG+AGG | 0.610635 | 3.3:+66415370 | None:intergenic |
| ATGGAATATCACTATGACAG+TGG | 0.625164 | 3.3:-66415427 | MS.gene022269:CDS |
| CTGATAAAAGAATCAAAGTG+TGG | 0.636026 | 3.3:-66414700 | MS.gene022269:CDS |
| TTGGTATGGGAGAAAGAAGA+CGG | 0.639629 | 3.3:-66414530 | MS.gene022269:CDS |
| TGTCGGATGAACCAGTGAGG+AGG | 0.641223 | 3.3:+66415200 | None:intergenic |
| TGAGGGAAGGAACTGAGAGG+AGG | 0.642268 | 3.3:+66415329 | None:intergenic |
| GTTTCTCCAAGGTATCAACA+AGG | 0.648819 | 3.3:+66414630 | None:intergenic |
| TATGATGGAACTGTCTACAG+TGG | 0.654469 | 3.3:-66414728 | MS.gene022269:CDS |
| CCGACAGAGAAATCACAACA+TGG | 0.662721 | 3.3:-66415183 | MS.gene022269:CDS |
| GCTGCGTTGTGAAGTGAGGG+AGG | 0.663813 | 3.3:+66415351 | None:intergenic |
| TTTCTCCAAGGTATCAACAA+GGG | 0.666471 | 3.3:+66414631 | None:intergenic |
| AAAACCATAAGAATTTGGAG+GGG | 0.688455 | 3.3:-66414389 | MS.gene022269:CDS |
| GGTTGAGGGAAGGAACTGAG+AGG | 0.692947 | 3.3:+66415326 | None:intergenic |
| CTCTGTCGGATGAACCAGTG+AGG | 0.707922 | 3.3:+66415197 | None:intergenic |
| ACACGATGATGCTATAAACG+CGG | 0.742968 | 3.3:-66414762 | MS.gene022269:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATTGAATTACTA+AGG | + | chr3.3:66414545-66414564 | None:intergenic | 20.0% |
| !!! | TTATTGTTGTTTGTCTATTT+TGG | - | chr3.3:66415278-66415297 | MS.gene022269:CDS | 20.0% |
| ! | AACTAAAGATTTCACTTGTT+TGG | - | chr3.3:66414831-66414850 | MS.gene022269:CDS | 25.0% |
| ! | ATAAAACCATAAGAATTTGG+AGG | - | chr3.3:66415241-66415260 | MS.gene022269:CDS | 25.0% |
| ! | CTGATAAAACCATAAGAATT+TGG | - | chr3.3:66415238-66415257 | MS.gene022269:CDS | 25.0% |
| ! | GATGAATCTATTCTATATTC+CGG | - | chr3.3:66415060-66415079 | MS.gene022269:CDS | 25.0% |
| ! | TAAAACCATAAGAATTTGGA+GGG | - | chr3.3:66415242-66415261 | MS.gene022269:CDS | 25.0% |
| ! | TGATAGATCAATATTGGTAT+GGG | - | chr3.3:66415089-66415108 | MS.gene022269:CDS | 25.0% |
| !!! | ATTTTTTGTGTCTACGAATT+TGG | + | chr3.3:66414708-66414727 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATTAAGATTT+TGG | + | chr3.3:66414680-66414699 | None:intergenic | 25.0% |
| AAAACCATAAGAATTTGGAG+GGG | - | chr3.3:66415243-66415262 | MS.gene022269:CDS | 30.0% | |
| AACAAAGTAATAGCAGGAAA+GGG | - | chr3.3:66414508-66414527 | MS.gene022269:CDS | 30.0% | |
| CCACTATAGACTAAAAAAGA+TGG | + | chr3.3:66415378-66415397 | None:intergenic | 30.0% | |
| CTGATAAAAGAATCAAAGTG+TGG | - | chr3.3:66414932-66414951 | MS.gene022269:CDS | 30.0% | |
| GTGATAGATCAATATTGGTA+TGG | - | chr3.3:66415088-66415107 | MS.gene022269:CDS | 30.0% | |
| TGCTTGTGATAGATCAATAT+TGG | - | chr3.3:66415083-66415102 | MS.gene022269:CDS | 30.0% | |
| TTTAGTCTATAGTGGTAGTT+TGG | - | chr3.3:66415383-66415402 | MS.gene022269:CDS | 30.0% | |
| ! | AGTTTTTGTACTCTGTTTCA+TGG | - | chr3.3:66414785-66414804 | MS.gene022269:CDS | 30.0% |
| ! | CTACATGAGTGTATTTTGTT+TGG | + | chr3.3:66414627-66414646 | None:intergenic | 30.0% |
| ! | GTTTTTGTACTCTGTTTCAT+GGG | - | chr3.3:66414786-66414805 | MS.gene022269:CDS | 30.0% |
| !! | TGTTGTTTGTCTATTTTGGA+AGG | - | chr3.3:66415282-66415301 | MS.gene022269:CDS | 30.0% |
| !!! | CCATCTTTTTTAGTCTATAG+TGG | - | chr3.3:66415375-66415394 | MS.gene022269:CDS | 30.0% |
| !!! | GAATTTGGACATGGTTTTTT+GGG | + | chr3.3:66414693-66414712 | None:intergenic | 30.0% |
| AAAGTGTGGAAGAATCTTCA+AGG | - | chr3.3:66414946-66414965 | MS.gene022269:CDS | 35.0% | |
| ACCAACAACAAAGTAATAGC+AGG | - | chr3.3:66414502-66414521 | MS.gene022269:CDS | 35.0% | |
| ACCTTCAACCTCAACAATTA+GGG | - | chr3.3:66414254-66414273 | MS.gene022269:CDS | 35.0% | |
| ATGGAATATCACTATGACAG+TGG | - | chr3.3:66414205-66414224 | MS.gene022269:CDS | 35.0% | |
| ATTGTGTTTAGCTGTTGTGT+GGG | - | chr3.3:66415194-66415213 | MS.gene022269:CDS | 35.0% | |
| CAACAAAGTAATAGCAGGAA+AGG | - | chr3.3:66414507-66414526 | MS.gene022269:CDS | 35.0% | |
| CAACGACGAAAATGGAAAAA+TGG | - | chr3.3:66415134-66415153 | MS.gene022269:CDS | 35.0% | |
| CAATTCTGGTATCAATGCTT+TGG | - | chr3.3:66415026-66415045 | MS.gene022269:CDS | 35.0% | |
| CGAAAATGGAAAAATGGTTC+TGG | - | chr3.3:66415140-66415159 | MS.gene022269:CDS | 35.0% | |
| TACCTTCAACCTCAACAATT+AGG | - | chr3.3:66414253-66414272 | MS.gene022269:CDS | 35.0% | |
| TAGACACAAAAAATGCACGT+GGG | - | chr3.3:66414714-66414733 | MS.gene022269:CDS | 35.0% | |
| TAGTTTGGACTGTGACATTA+AGG | - | chr3.3:66415398-66415417 | MS.gene022269:CDS | 35.0% | |
| TATTGATCTATCACAAGCAC+CGG | + | chr3.3:66415082-66415101 | None:intergenic | 35.0% | |
| TATTGTGTTTAGCTGTTGTG+TGG | - | chr3.3:66415193-66415212 | MS.gene022269:CDS | 35.0% | |
| ! | ATTTCCAGACACGGATTTTA+TGG | + | chr3.3:66414594-66414613 | None:intergenic | 35.0% |
| ! | TCCATCTTTAGAAAGAGCAA+GGG | + | chr3.3:66414764-66414783 | None:intergenic | 35.0% |
| ! | TCCTGCTATTACTTTGTTGT+TGG | + | chr3.3:66414506-66414525 | None:intergenic | 35.0% |
| ! | TTCCATCTTTAGAAAGAGCA+AGG | + | chr3.3:66414765-66414784 | None:intergenic | 35.0% |
| ! | TTTCTCCAAGGTATCAACAA+GGG | + | chr3.3:66415004-66415023 | None:intergenic | 35.0% |
| !! | AATGGAAAAATGGTTCTGGT+TGG | - | chr3.3:66415144-66415163 | MS.gene022269:CDS | 35.0% |
| !! | AGTGTATTTTGTTTGGTCGT+TGG | + | chr3.3:66414620-66414639 | None:intergenic | 35.0% |
| !! | GGATTAAGATTTTGGAAGCA+CGG | + | chr3.3:66414672-66414691 | None:intergenic | 35.0% |
| !! | TCTATTTTGGAAGGACATCA+AGG | - | chr3.3:66415291-66415310 | MS.gene022269:CDS | 35.0% |
| !!! | CGAATTTGGACATGGTTTTT+TGG | + | chr3.3:66414694-66414713 | None:intergenic | 35.0% |
| AACACCCCTCCAAATTCTTA+TGG | + | chr3.3:66415250-66415269 | None:intergenic | 40.0% | |
| AAGACCATAAAATCCGTGTC+TGG | - | chr3.3:66414587-66414606 | MS.gene022269:CDS | 40.0% | |
| AAGAGTTGTTGTGGGATTTG+AGG | + | chr3.3:66414378-66414397 | None:intergenic | 40.0% | |
| ACACGATGATGCTATAAACG+CGG | - | chr3.3:66414870-66414889 | MS.gene022269:CDS | 40.0% | |
| ACATTCCCTTGTTGATACCT+TGG | - | chr3.3:66414996-66415015 | MS.gene022269:CDS | 40.0% | |
| ACCAGAATTGTGTTTCTCCA+AGG | + | chr3.3:66415016-66415035 | None:intergenic | 40.0% | |
| ACCCTAATTGTTGAGGTTGA+AGG | + | chr3.3:66414258-66414277 | None:intergenic | 40.0% | |
| ACCTTGGAGAAACACAATTC+TGG | - | chr3.3:66415012-66415031 | MS.gene022269:CDS | 40.0% | |
| AGAGTTGTTGTGGGATTTGA+GGG | + | chr3.3:66414377-66414396 | None:intergenic | 40.0% | |
| ATGTGTAGGAAGAGTTGTTG+TGG | + | chr3.3:66414387-66414406 | None:intergenic | 40.0% | |
| ATTGTTGAGGTTGAAGGTAG+TGG | + | chr3.3:66414252-66414271 | None:intergenic | 40.0% | |
| ATTTGAGGGTTATGATGAGG+TGG | + | chr3.3:66414363-66414382 | None:intergenic | 40.0% | |
| CCATGTTGTGATTTCTCTGT+CGG | + | chr3.3:66414452-66414471 | None:intergenic | 40.0% | |
| GGGACAGAACAATCAAAATC+TGG | - | chr3.3:66414806-66414825 | MS.gene022269:CDS | 40.0% | |
| GGTTGTTGTGTCTTCTTCAT+AGG | + | chr3.3:66414485-66414504 | None:intergenic | 40.0% | |
| GTAGACACAAAAAATGCACG+TGG | - | chr3.3:66414713-66414732 | MS.gene022269:CDS | 40.0% | |
| TGGACTGTGACATTAAGGTT+TGG | - | chr3.3:66415403-66415422 | MS.gene022269:CDS | 40.0% | |
| TGTGTAGGAAGAGTTGTTGT+GGG | + | chr3.3:66414386-66414405 | None:intergenic | 40.0% | |
| TGTGTCTACGAATTTGGACA+TGG | + | chr3.3:66414702-66414721 | None:intergenic | 40.0% | |
| TGTTGTGTCTTCTTCATAGG+TGG | + | chr3.3:66414482-66414501 | None:intergenic | 40.0% | |
| TTGGTATGGGAGAAAGAAGA+CGG | - | chr3.3:66415102-66415121 | MS.gene022269:CDS | 40.0% | |
| TTTGAGGGTTATGATGAGGT+GGG | + | chr3.3:66414362-66414381 | None:intergenic | 40.0% | |
| ! | ATAAGAATTTGGAGGGGTGT+TGG | - | chr3.3:66415249-66415268 | MS.gene022269:CDS | 40.0% |
| ! | CGTTGGTTAATTTCCAGACA+CGG | + | chr3.3:66414603-66414622 | None:intergenic | 40.0% |
| ! | GTTTCTCCAAGGTATCAACA+AGG | + | chr3.3:66415005-66415024 | None:intergenic | 40.0% |
| ! | TATGATGGAACTGTCTACAG+TGG | - | chr3.3:66414904-66414923 | MS.gene022269:CDS | 40.0% |
| ! | TCCCTTGCTCTTTCTAAAGA+TGG | - | chr3.3:66414760-66414779 | MS.gene022269:CDS | 40.0% |
| !! | GCGGTTGTTGTTTCTTATGA+TGG | - | chr3.3:66414889-66414908 | MS.gene022269:CDS | 40.0% |
| !! | GTCTTGATGAGCACTGAAAA+GGG | + | chr3.3:66414572-66414591 | None:intergenic | 40.0% |
| ACATCCTCTCTCACTCTCTT+CGG | - | chr3.3:66414403-66414422 | MS.gene022269:CDS | 45.0% | |
| CCGACAGAGAAATCACAACA+TGG | - | chr3.3:66414449-66414468 | MS.gene022269:CDS | 45.0% | |
| GAGGTTGACCCTAATTGTTG+AGG | + | chr3.3:66414265-66414284 | None:intergenic | 45.0% | |
| GGGATTTGAGGGTTATGATG+AGG | + | chr3.3:66414366-66414385 | None:intergenic | 45.0% | |
| GTAGCAACACTTCCAACACT+TGG | - | chr3.3:66414643-66414662 | MS.gene022269:CDS | 45.0% | |
| TATAGCATCATCGTGTGCGT+TGG | + | chr3.3:66414866-66414885 | None:intergenic | 45.0% | |
| TTATGATGAGGTGGGAAGTG+TGG | + | chr3.3:66414354-66414373 | None:intergenic | 45.0% | |
| TTCGGTAAATTCCTCCTCAC+TGG | - | chr3.3:66414421-66414440 | MS.gene022269:CDS | 45.0% | |
| TTTACCGAAGAGAGTGAGAG+AGG | + | chr3.3:66414410-66414429 | None:intergenic | 45.0% | |
| ! | GTGTGGGATTTTGTGTGTAG+TGG | - | chr3.3:66415210-66415229 | MS.gene022269:CDS | 45.0% |
| ! | GTTCTGGTTGGTGCATTAAG+AGG | - | chr3.3:66415156-66415175 | MS.gene022269:CDS | 45.0% |
| ! | TTGAGGTTGAAGGTAGTGGT+TGG | + | chr3.3:66414248-66414267 | None:intergenic | 45.0% |
| !! | GGTCTTGATGAGCACTGAAA+AGG | + | chr3.3:66414573-66414592 | None:intergenic | 45.0% |
| AGCGACGACAACGACGAAAA+TGG | - | chr3.3:66415126-66415145 | MS.gene022269:CDS | 50.0% | |
| ATGCACGTGGGTTCATCATG+TGG | - | chr3.3:66414726-66414745 | MS.gene022269:CDS | 50.0% | |
| GAGAGTGAGAGAGGATGTGT+AGG | + | chr3.3:66414401-66414420 | None:intergenic | 50.0% | |
| GTAGTGGTTGGAGTGAGATG+AGG | + | chr3.3:66414236-66414255 | None:intergenic | 50.0% | |
| TGATGTGGGGATTGTGACGA+GGG | + | chr3.3:66414330-66414349 | None:intergenic | 50.0% | |
| TTGATGTGGGGATTGTGACG+AGG | + | chr3.3:66414331-66414350 | None:intergenic | 50.0% | |
| ! | GTGGGAAGTGTGGTTGATGT+GGG | + | chr3.3:66414344-66414363 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGGTTGATGTG+GGG | + | chr3.3:66414343-66414362 | None:intergenic | 50.0% |
| CTCTGTCGGATGAACCAGTG+AGG | + | chr3.3:66414438-66414457 | None:intergenic | 55.0% | |
| GAAGCACGGTCACCAAGTGT+TGG | + | chr3.3:66414658-66414677 | None:intergenic | 55.0% | |
| GAGGCTGCGTTGTGAAGTGA+GGG | + | chr3.3:66414287-66414306 | None:intergenic | 55.0% | |
| GGGATTGTGACGAGGGTTGA+GGG | + | chr3.3:66414323-66414342 | None:intergenic | 55.0% | |
| GGTTGAGGGAAGGAACTGAG+AGG | + | chr3.3:66414309-66414328 | None:intergenic | 55.0% | |
| TGAGGGAAGGAACTGAGAGG+AGG | + | chr3.3:66414306-66414325 | None:intergenic | 55.0% | |
| TGTCGGATGAACCAGTGAGG+AGG | + | chr3.3:66414435-66414454 | None:intergenic | 55.0% | |
| TTGTGACGAGGGTTGAGGGA+AGG | + | chr3.3:66414319-66414338 | None:intergenic | 55.0% | |
| ! | GGTGGGAAGTGTGGTTGATG+TGG | + | chr3.3:66414345-66414364 | None:intergenic | 55.0% |
| GCTGCGTTGTGAAGTGAGGG+AGG | + | chr3.3:66414284-66414303 | None:intergenic | 60.0% | |
| GGAGGCTGCGTTGTGAAGTG+AGG | + | chr3.3:66414288-66414307 | None:intergenic | 60.0% | |
| GGGGATTGTGACGAGGGTTG+AGG | + | chr3.3:66414324-66414343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 66414205 | 66415449 | 66414205 | ID=MS.gene022269 |
| chr3.3 | mRNA | 66414205 | 66415449 | 66414205 | ID=MS.gene022269.t1;Parent=MS.gene022269 |
| chr3.3 | exon | 66414205 | 66415449 | 66414205 | ID=MS.gene022269.t1.exon1;Parent=MS.gene022269.t1 |
| chr3.3 | CDS | 66414205 | 66415449 | 66414205 | ID=cds.MS.gene022269.t1;Parent=MS.gene022269.t1 |
| Gene Sequence |
| Protein sequence |
