Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022710.t1 | KEH17989.1 | 99.4 | 361 | 2 | 0 | 1 | 361 | 33 | 393 | 4.90E-203 | 716.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022710.t1 | Q9XG98 | 93.1 | 333 | 19 | 2 | 30 | 360 | 5 | 335 | 4.8e-175 | 615.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022710.t1 | A0A072TKF0 | 99.4 | 361 | 2 | 0 | 1 | 361 | 33 | 393 | 3.5e-203 | 716.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene022710 | MS.gene011634 | PPI |
MS.gene022710 | MS.gene60379 | PPI |
MS.gene022710 | MS.gene065447 | PPI |
MS.gene46361 | MS.gene022710 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022710.t1 | MTR_8g009660 | 99.446 | 361 | 2 | 0 | 1 | 361 | 33 | 393 | 0.0 | 746 |
MS.gene022710.t1 | MTR_8g009660 | 99.437 | 355 | 2 | 0 | 1 | 355 | 33 | 387 | 0.0 | 734 |
MS.gene022710.t1 | MTR_4g098820 | 82.073 | 357 | 56 | 2 | 4 | 360 | 55 | 403 | 0.0 | 598 |
MS.gene022710.t1 | MTR_8g009660 | 99.636 | 275 | 1 | 0 | 1 | 275 | 33 | 307 | 0.0 | 569 |
MS.gene022710.t1 | MTR_5g033300 | 25.574 | 305 | 201 | 12 | 43 | 329 | 83 | 379 | 5.99e-17 | 82.0 |
MS.gene022710.t1 | MTR_5g033300 | 23.432 | 303 | 178 | 11 | 43 | 329 | 83 | 347 | 7.97e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022710.t1 | AT2G44530 | 92.767 | 318 | 21 | 1 | 40 | 355 | 65 | 382 | 0.0 | 613 |
MS.gene022710.t1 | AT2G44530 | 92.767 | 318 | 21 | 1 | 40 | 355 | 64 | 381 | 0.0 | 613 |
MS.gene022710.t1 | AT1G32380 | 85.373 | 335 | 45 | 2 | 29 | 361 | 68 | 400 | 0.0 | 597 |
MS.gene022710.t1 | AT2G35390 | 82.073 | 357 | 55 | 3 | 7 | 361 | 54 | 403 | 0.0 | 596 |
MS.gene022710.t1 | AT2G35390 | 82.073 | 357 | 55 | 3 | 7 | 361 | 3 | 352 | 0.0 | 595 |
MS.gene022710.t1 | AT2G35390 | 82.073 | 357 | 55 | 3 | 7 | 361 | 3 | 352 | 0.0 | 595 |
MS.gene022710.t1 | AT1G32380 | 91.096 | 292 | 26 | 0 | 70 | 361 | 1 | 292 | 0.0 | 559 |
MS.gene022710.t1 | AT2G35390 | 80.808 | 297 | 48 | 3 | 7 | 301 | 54 | 343 | 5.40e-172 | 483 |
MS.gene022710.t1 | AT1G10700 | 25.786 | 318 | 209 | 13 | 10 | 309 | 54 | 362 | 3.58e-17 | 82.8 |
MS.gene022710.t1 | AT2G42910 | 27.329 | 322 | 205 | 15 | 46 | 347 | 23 | 335 | 9.57e-15 | 74.7 |
Find 79 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGCAGTCATTCCATATTT+TGG | 0.133514 | 8.3:+79280925 | MS.gene022710:CDS |
ATAGGAAATTGCATGTTATA+TGG | 0.209711 | 8.3:+79280717 | MS.gene022710:intron |
CCTCCACTCTGGGCAGTCTA+TGG | 0.245181 | 8.3:+79281910 | MS.gene022710:CDS |
CTACTGATAAGACAGTTAAT+TGG | 0.262391 | 8.3:-79284418 | None:intergenic |
GCTCTAGCATATCCAAAATA+TGG | 0.280293 | 8.3:-79280937 | None:intergenic |
ATGTTATATGGGCCTGGATC+TGG | 0.313034 | 8.3:+79280729 | MS.gene022710:CDS |
ATCTGAACAAATAGTCTTGC+TGG | 0.323128 | 8.3:-79282409 | None:intergenic |
TACTGATAAGACAGTTAATT+GGG | 0.362406 | 8.3:-79284417 | None:intergenic |
CTTATCAGTAGCAAACCTTC+TGG | 0.366216 | 8.3:+79284430 | MS.gene022710:CDS |
ATGCAAAAGAGCTGCTCCTT+TGG | 0.367206 | 8.3:-79283867 | None:intergenic |
AATTTGATTGGTGATGTAAA+AGG | 0.370527 | 8.3:+79282704 | MS.gene022710:CDS |
TCAACTGAATATTCAGTTAC+CGG | 0.386620 | 8.3:+79276442 | MS.gene022710:CDS |
TCCAACTGCAAGAGAGTGTC+AGG | 0.388820 | 8.3:+79280794 | MS.gene022710:CDS |
TGTAGTACAATCTGTCAATC+TGG | 0.401957 | 8.3:+79276399 | MS.gene022710:CDS |
CTTGCATGTGACCTCCACTC+TGG | 0.408654 | 8.3:+79281899 | MS.gene022710:CDS |
GCAAGGTAATCGAGTATAAC+AGG | 0.410223 | 8.3:-79282387 | None:intergenic |
TAGGAAATTGCATGTTATAT+GGG | 0.416483 | 8.3:+79280718 | MS.gene022710:intron |
CGCCAATCCCGCACTCGCTC+AGG | 0.422121 | 8.3:+79276558 | MS.gene022710:CDS |
ACCTTCTGGGCGAGACCATA+TGG | 0.425438 | 8.3:+79284444 | MS.gene022710:CDS |
TCCCGCGAATGAGAATCTTA+TGG | 0.430669 | 8.3:+79280852 | MS.gene022710:CDS |
AGATCATGAATACGAGTGTT+TGG | 0.434509 | 8.3:-79276499 | None:intergenic |
TGTCCATACACATGATCAAC+TGG | 0.436657 | 8.3:-79281947 | None:intergenic |
GCAAATTTAATTACAGAAGC+TGG | 0.437018 | 8.3:+79281863 | MS.gene022710:CDS |
AACAAATAGTCTTGCTGGCA+AGG | 0.449627 | 8.3:-79282404 | None:intergenic |
ATTCCAGTTGATCATGTGTA+TGG | 0.449841 | 8.3:+79281944 | MS.gene022710:CDS |
CTAGCTACACCACCAACATC+TGG | 0.450859 | 8.3:-79282450 | None:intergenic |
CTCCACTCTGGGCAGTCTAT+GGG | 0.471385 | 8.3:+79281911 | MS.gene022710:CDS |
TTGCATGTGACCTCCACTCT+GGG | 0.471838 | 8.3:+79281900 | MS.gene022710:CDS |
TACCTGAGCGAGTGCGGGAT+TGG | 0.477160 | 8.3:-79276560 | None:intergenic |
TTGCAGGTGATGAATTTGAT+TGG | 0.480553 | 8.3:+79282692 | MS.gene022710:intron |
TTATCAGTAGCAAACCTTCT+GGG | 0.489700 | 8.3:+79284431 | MS.gene022710:CDS |
CAATCTGTCAATCTGGAAAA+CGG | 0.495351 | 8.3:+79276406 | MS.gene022710:CDS |
CTGAGCGAGTGCGGGATTGG+CGG | 0.495771 | 8.3:-79276557 | None:intergenic |
GTCATCGTGAACACGCCATA+TGG | 0.510952 | 8.3:-79284459 | None:intergenic |
TTTGGCAGAAGCTCTCCTGC+AGG | 0.516016 | 8.3:-79280896 | None:intergenic |
AATTGCATGTTATATGGGCC+TGG | 0.517043 | 8.3:+79280723 | MS.gene022710:CDS |
TGTTATATGGGCCTGGATCT+GGG | 0.520595 | 8.3:+79280730 | MS.gene022710:CDS |
CCCTGACACTCTCTTGCAGT+TGG | 0.525864 | 8.3:-79280795 | None:intergenic |
TCCATAAGATTCTCATTCGC+GGG | 0.527102 | 8.3:-79280853 | None:intergenic |
CTCCATAAGATTCTCATTCG+CGG | 0.529400 | 8.3:-79280854 | None:intergenic |
CTTGACAATCTCTCTATAGC+AGG | 0.530606 | 8.3:-79284332 | None:intergenic |
TCGTAATGATTGATGCCTGC+AGG | 0.530985 | 8.3:+79280881 | MS.gene022710:CDS |
AAAAGGAAAGGTAGCAGTGA+TGG | 0.532343 | 8.3:+79282721 | MS.gene022710:CDS |
CAACTACTGTTTCAGACTCA+AGG | 0.542966 | 8.3:+79281812 | MS.gene022710:intron |
AGTTGATCATGTGTATGGAC+AGG | 0.543298 | 8.3:+79281949 | MS.gene022710:CDS |
AAGTAGTTCTTCTCTGCTAG+TGG | 0.549029 | 8.3:-79284392 | None:intergenic |
GATGATACCTGAGCGAGTGC+GGG | 0.549570 | 8.3:-79276565 | None:intergenic |
ATTGTTGATAAAAGACGTCA+TGG | 0.550483 | 8.3:+79282516 | MS.gene022710:CDS |
ATATGCTAGAGCTGATAGAA+AGG | 0.559762 | 8.3:+79280948 | MS.gene022710:CDS |
CGGAATTGAACTTGTACCAC+CGG | 0.561435 | 8.3:-79276461 | None:intergenic |
GATTGGTGATGTAAAAGGAA+AGG | 0.565352 | 8.3:+79282709 | MS.gene022710:CDS |
TCATTCGCGGGAGGACATGT+AGG | 0.571769 | 8.3:-79280841 | None:intergenic |
AAGAGCTGCTCCTTTGGCGA+TGG | 0.573536 | 8.3:-79283861 | None:intergenic |
GGATGATACCTGAGCGAGTG+CGG | 0.580736 | 8.3:-79276566 | None:intergenic |
GCCATATGGTCTCGCCCAGA+AGG | 0.586947 | 8.3:-79284445 | None:intergenic |
ATAGTTGTCTCGCCAGATGT+TGG | 0.591097 | 8.3:+79282438 | MS.gene022710:CDS |
GACAATCTCTCTATAGCAGG+AGG | 0.595468 | 8.3:-79284329 | None:intergenic |
GATGACATGATTGATACTGC+TGG | 0.599761 | 8.3:+79282746 | MS.gene022710:CDS |
GTTGTCTCGCCAGATGTTGG+TGG | 0.603849 | 8.3:+79282441 | MS.gene022710:CDS |
GAATATTCAGTTGAACGGTA+CGG | 0.605959 | 8.3:-79276433 | None:intergenic |
TAACTGAATATTCAGTTGAA+CGG | 0.606307 | 8.3:-79276438 | None:intergenic |
TTCAATTCCGAGTTATCTAG+TGG | 0.607893 | 8.3:+79276474 | MS.gene022710:CDS |
AACTACTGTTTCAGACTCAA+GGG | 0.616461 | 8.3:+79281813 | MS.gene022710:intron |
CTTATAGGGACCATCGCCAA+AGG | 0.620442 | 8.3:+79283851 | MS.gene022710:intron |
TTTGGCGCCACTAGATAACT+CGG | 0.630034 | 8.3:-79276481 | None:intergenic |
CCATAGACTGCCCAGAGTGG+AGG | 0.638297 | 8.3:-79281910 | None:intergenic |
ACTGATAAGACAGTTAATTG+GGG | 0.644887 | 8.3:-79284416 | None:intergenic |
AGCCCATAGACTGCCCAGAG+TGG | 0.655210 | 8.3:-79281913 | None:intergenic |
TCATGGGCATAATGTTGCCG+AGG | 0.655448 | 8.3:+79282533 | MS.gene022710:CDS |
TTGGACATATATCTCCCCAT+CGG | 0.659494 | 8.3:-79280776 | None:intergenic |
ATAAGATTCTCATTCGCGGG+AGG | 0.659940 | 8.3:-79280850 | None:intergenic |
ACAATCTCTCTATAGCAGGA+GGG | 0.668556 | 8.3:-79284328 | None:intergenic |
CAACTGCAAGAGAGTGTCAG+GGG | 0.669938 | 8.3:+79280796 | MS.gene022710:CDS |
CCAACTGCAAGAGAGTGTCA+GGG | 0.672047 | 8.3:+79280795 | MS.gene022710:CDS |
ACTGAATATTCAGTTACCGG+TGG | 0.679249 | 8.3:+79276445 | MS.gene022710:CDS |
CTGATAAGACAGTTAATTGG+GGG | 0.686616 | 8.3:-79284415 | None:intergenic |
TTGTTGATAAAAGACGTCAT+GGG | 0.699425 | 8.3:+79282517 | MS.gene022710:CDS |
GCTATAGAGAGATTGTCAAG+CGG | 0.702672 | 8.3:+79284335 | MS.gene022710:CDS |
AACTGCAAGAGAGTGTCAGG+GGG | 0.717564 | 8.3:+79280797 | MS.gene022710:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 79276388 | 79284508 | 79276388 | ID=MS.gene022710 |
chr8.3 | mRNA | 79276388 | 79284508 | 79276388 | ID=MS.gene022710.t1;Parent=MS.gene022710 |
chr8.3 | exon | 79276388 | 79276579 | 79276388 | ID=MS.gene022710.t1.exon1;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79276388 | 79276579 | 79276388 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79280721 | 79280969 | 79280721 | ID=MS.gene022710.t1.exon2;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79280721 | 79280969 | 79280721 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79281827 | 79281970 | 79281827 | ID=MS.gene022710.t1.exon3;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79281827 | 79281970 | 79281827 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79282387 | 79282554 | 79282387 | ID=MS.gene022710.t1.exon4;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79282387 | 79282554 | 79282387 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79282698 | 79282767 | 79282698 | ID=MS.gene022710.t1.exon5;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79282698 | 79282767 | 79282698 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79283858 | 79283939 | 79283858 | ID=MS.gene022710.t1.exon6;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79283858 | 79283939 | 79283858 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
chr8.3 | exon | 79284328 | 79284508 | 79284328 | ID=MS.gene022710.t1.exon7;Parent=MS.gene022710.t1 |
chr8.3 | CDS | 79284328 | 79284508 | 79284328 | ID=cds.MS.gene022710.t1;Parent=MS.gene022710.t1 |
Gene Sequence |
Protein sequence |