Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023528.t1 | XP_003629711.2 | 95.9 | 728 | 29 | 1 | 1 | 727 | 1 | 728 | 0.00E+00 | 1378.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023528.t1 | Q84P17 | 68.8 | 730 | 217 | 7 | 4 | 727 | 3 | 727 | 7.9e-294 | 1010.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023528.t1 | G7LHZ3 | 95.9 | 728 | 29 | 1 | 1 | 727 | 1 | 728 | 0.0e+00 | 1378.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83231 | MS.gene023528 | PPI |
| MS.gene045801 | MS.gene023528 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023528.t1 | MTR_8g085680 | 96.429 | 728 | 25 | 1 | 1 | 727 | 1 | 728 | 0.0 | 1444 |
| MS.gene023528.t1 | MTR_8g085680 | 96.110 | 694 | 26 | 1 | 1 | 693 | 1 | 694 | 0.0 | 1374 |
| MS.gene023528.t1 | MTR_8g086050 | 85.871 | 729 | 101 | 1 | 1 | 727 | 1 | 729 | 0.0 | 1263 |
| MS.gene023528.t1 | MTR_8g085680 | 94.296 | 561 | 31 | 1 | 1 | 560 | 1 | 561 | 0.0 | 1087 |
| MS.gene023528.t1 | MTR_8g086050 | 86.517 | 623 | 82 | 1 | 1 | 621 | 1 | 623 | 0.0 | 1082 |
| MS.gene023528.t1 | MTR_8g086050 | 86.464 | 591 | 78 | 1 | 1 | 589 | 1 | 591 | 0.0 | 1020 |
| MS.gene023528.t1 | MTR_2g056120 | 50.274 | 730 | 343 | 11 | 1 | 720 | 1 | 720 | 0.0 | 724 |
| MS.gene023528.t1 | MTR_7g084850 | 24.880 | 623 | 428 | 22 | 123 | 721 | 118 | 724 | 3.35e-30 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023528.t1 | AT1G55320 | 69.452 | 730 | 212 | 7 | 4 | 727 | 3 | 727 | 0.0 | 1044 |
| MS.gene023528.t1 | AT1G55320 | 74.755 | 511 | 126 | 3 | 220 | 727 | 1 | 511 | 0.0 | 793 |
| MS.gene023528.t1 | AT5G23050 | 50.622 | 723 | 344 | 8 | 1 | 719 | 1 | 714 | 0.0 | 699 |
| MS.gene023528.t1 | AT5G23050 | 49.241 | 593 | 290 | 7 | 1 | 591 | 1 | 584 | 0.0 | 549 |
| MS.gene023528.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 106 | 721 | 47 | 669 | 6.07e-26 | 114 |
| MS.gene023528.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 106 | 721 | 47 | 669 | 6.07e-26 | 114 |
| MS.gene023528.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 106 | 721 | 47 | 669 | 6.07e-26 | 114 |
| MS.gene023528.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 106 | 721 | 47 | 669 | 6.07e-26 | 114 |
| MS.gene023528.t1 | AT5G36880 | 25.154 | 648 | 428 | 25 | 106 | 721 | 97 | 719 | 6.72e-26 | 114 |
| MS.gene023528.t1 | AT5G36880 | 25.131 | 573 | 374 | 23 | 106 | 646 | 47 | 596 | 8.84e-19 | 91.3 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAGAAGATTTACTTTA+AGG | 0.083745 | 4.4:+14367483 | MS.gene023528:CDS |
| CAACCTTAATCCTTTATTTA+AGG | 0.093679 | 4.4:+14368568 | MS.gene023528:CDS |
| CTTCTTCTCCTCCTCTTTAT+TGG | 0.129077 | 4.4:+14361433 | MS.gene023528:CDS |
| TGCATCACCCTTGGAGAAAT+TGG | 0.134060 | 4.4:-14364185 | None:intergenic |
| TATTGCTGGCCTACAAATTT+AGG | 0.157820 | 4.4:+14366027 | MS.gene023528:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.4:+14366828 | MS.gene023528:intron |
| ATACTCTCATCTTGTTTGTT+AGG | 0.203184 | 4.4:-14363983 | None:intergenic |
| GCCTCCACAACATTCAATTA+TGG | 0.214028 | 4.4:-14367066 | None:intergenic |
| TTAGTCATCCTTGATGAAAA+TGG | 0.254005 | 4.4:+14367176 | MS.gene023528:CDS |
| TGACCTTAAATAAAGGATTA+AGG | 0.255216 | 4.4:-14368571 | None:intergenic |
| CTACTACAGCCTCAAGCTTT+TGG | 0.257165 | 4.4:+14367122 | MS.gene023528:CDS |
| AGGCGAGTTGCAATTTCTTT+TGG | 0.267236 | 4.4:-14364307 | None:intergenic |
| TTATATTCATGCTTCCTATC+TGG | 0.270357 | 4.4:+14366072 | MS.gene023528:CDS |
| TAGGGCTGATGAATGCATTT+TGG | 0.283163 | 4.4:+14368415 | MS.gene023528:CDS |
| GGGCTTATTCCCTGTATATA+TGG | 0.294420 | 4.4:+14367432 | MS.gene023528:CDS |
| GCTTGGAACTGTTCCCAAAA+TGG | 0.311835 | 4.4:-14366842 | None:intergenic |
| CACGGAGGAACCTGGCTTCC+TGG | 0.313286 | 4.4:+14363914 | MS.gene023528:CDS |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.4:-14368104 | None:intergenic |
| CATGAGAAGATTTACTTTAA+GGG | 0.321098 | 4.4:+14367484 | MS.gene023528:CDS |
| CATGAATCTTGGTGGAATAA+AGG | 0.322680 | 4.4:+14368105 | MS.gene023528:CDS |
| CCTCCACAACATTCAATTAT+GGG | 0.325262 | 4.4:-14367065 | None:intergenic |
| TGAGTCCAAGGAATTGCTTT+TGG | 0.327617 | 4.4:-14365940 | None:intergenic |
| GAGAGTTTGACCTTAAATAA+AGG | 0.331168 | 4.4:-14368578 | None:intergenic |
| CAACACTTCCTTCAATTCAT+TGG | 0.331370 | 4.4:-14361274 | None:intergenic |
| AAAAGAGGAAAACTAGTAAT+AGG | 0.341960 | 4.4:-14363643 | None:intergenic |
| TCTCCGCTAGGTCATGGTTT+TGG | 0.352620 | 4.4:+14366120 | MS.gene023528:CDS |
| TACTCTCATCTTGTTTGTTA+GGG | 0.358590 | 4.4:-14363982 | None:intergenic |
| GAATCGATTGATTGATAGAT+TGG | 0.364438 | 4.4:-14365802 | None:intergenic |
| AGGATTAAGGTTGGTTTGAA+TGG | 0.369128 | 4.4:-14368558 | None:intergenic |
| ACAAATATAACCAGTTGTTC+TGG | 0.372196 | 4.4:-14368476 | None:intergenic |
| CAAATGTTGATGATGACCTT+TGG | 0.373899 | 4.4:+14367018 | MS.gene023528:CDS |
| AAATTGAGCGCGTCTGTGAT+AGG | 0.374839 | 4.4:+14368396 | MS.gene023528:CDS |
| GATGTATCTAAAATGCAATT+TGG | 0.379893 | 4.4:-14363875 | None:intergenic |
| TTCCTTCAATTCATTGGCTT+CGG | 0.393896 | 4.4:-14361268 | None:intergenic |
| CTCATCTTGTTTGTTAGGGT+GGG | 0.396642 | 4.4:-14363978 | None:intergenic |
| TACACAATGTATGGAGGGCT+TGG | 0.407496 | 4.4:+14366885 | MS.gene023528:CDS |
| TGGAGGGTGTGAGGGTATGA+TGG | 0.408960 | 4.4:-14361369 | None:intergenic |
| TCAGTTGCTCCCATATATAC+AGG | 0.409158 | 4.4:-14367442 | None:intergenic |
| AACCCGGAGACGTCTATTGC+TGG | 0.420668 | 4.4:+14366013 | MS.gene023528:CDS |
| TCCATCTGCAGCACTTCGTA+TGG | 0.431839 | 4.4:-14365971 | None:intergenic |
| GCAGGCAATCCGCACAAACC+TGG | 0.433498 | 4.4:+14363564 | MS.gene023528:CDS |
| TAGACTCCCCATGATATAAC+AGG | 0.435997 | 4.4:-14367102 | None:intergenic |
| CTGGCCTACAAATTTAGGTT+GGG | 0.439023 | 4.4:+14366032 | MS.gene023528:CDS |
| TCTCATCTTGTTTGTTAGGG+TGG | 0.442425 | 4.4:-14363979 | None:intergenic |
| TAAGAGAACATGACTTATCA+TGG | 0.450422 | 4.4:+14365620 | MS.gene023528:CDS |
| TTGGAAGAGTACACAATGTA+TGG | 0.451022 | 4.4:+14366876 | MS.gene023528:CDS |
| GTATTGCACTGCAGGTGTAC+TGG | 0.452092 | 4.4:+14363810 | MS.gene023528:intron |
| CCAACACAAGGTACATCATC+TGG | 0.453253 | 4.4:-14367403 | None:intergenic |
| ACTACAATTGTTCAGGATGC+AGG | 0.453438 | 4.4:+14366814 | MS.gene023528:intron |
| CACAAACCTGGGTCGTCTCA+TGG | 0.460302 | 4.4:+14363576 | MS.gene023528:CDS |
| GCGCTCAATTTCTACAGAAC+TGG | 0.462711 | 4.4:-14368384 | None:intergenic |
| TGCCGAAGCCAATGAATTGA+AGG | 0.463190 | 4.4:+14361266 | MS.gene023528:CDS |
| TTCAATTCATTGGCTTCGGC+AGG | 0.464114 | 4.4:-14361264 | None:intergenic |
| AAATGGAGGTCCAGAACAAC+TGG | 0.465792 | 4.4:+14368466 | MS.gene023528:CDS |
| CCACATTACTTCCAGGTTGG+TGG | 0.467372 | 4.4:+14364147 | MS.gene023528:intron |
| GGTTTCTAAATTTAGAGAGC+AGG | 0.469719 | 4.4:+14363546 | MS.gene023528:intron |
| GCCATCTTGTTGTGCAAGGA+AGG | 0.472268 | 4.4:+14368071 | MS.gene023528:CDS |
| ATGAGAGTATAGCTATCATC+TGG | 0.476182 | 4.4:+14363996 | MS.gene023528:CDS |
| TTTAGGAGCATCCTTGTACA+AGG | 0.477406 | 4.4:+14363618 | MS.gene023528:CDS |
| ATCACCCAACCTAAATTTGT+AGG | 0.482826 | 4.4:-14366036 | None:intergenic |
| TGTTTGTTAGGGTGGGAGCT+AGG | 0.484688 | 4.4:-14363971 | None:intergenic |
| GGGATCCAAAAGCAATTCCT+TGG | 0.486702 | 4.4:+14365935 | MS.gene023528:CDS |
| ACAAATTTAGGTTGGGTGAT+GGG | 0.487973 | 4.4:+14366039 | MS.gene023528:CDS |
| GTACCTTGTGTTGGTGAAGC+GGG | 0.488589 | 4.4:+14367412 | MS.gene023528:CDS |
| GGCTTATTCCCTGTATATAT+GGG | 0.489550 | 4.4:+14367433 | MS.gene023528:CDS |
| GCTTGCATCCTGTTATATCA+TGG | 0.489645 | 4.4:+14367094 | MS.gene023528:CDS |
| GTCAGTGTTTCTGCTGCAAA+TGG | 0.491410 | 4.4:+14368449 | MS.gene023528:CDS |
| AATTGCAATTGCATCACCCT+TGG | 0.492471 | 4.4:-14364194 | None:intergenic |
| TACGAAGTGCTGCAGATGGA+TGG | 0.492810 | 4.4:+14365974 | MS.gene023528:CDS |
| GCTGGCCTACAAATTTAGGT+TGG | 0.493594 | 4.4:+14366031 | MS.gene023528:CDS |
| TGTGAGGGTATGATGGTTTG+AGG | 0.493666 | 4.4:-14361362 | None:intergenic |
| CATCAAAACACGGAGGAACC+TGG | 0.494365 | 4.4:+14363906 | MS.gene023528:CDS |
| GATATAATCAAAAGAACTGT+AGG | 0.494735 | 4.4:+14368046 | MS.gene023528:CDS |
| CTTAAATAAAGGATTAAGGT+TGG | 0.496808 | 4.4:-14368567 | None:intergenic |
| GAGCAAGAGTTGCTCCAGAT+AGG | 0.507851 | 4.4:-14366086 | None:intergenic |
| GCAGAAAATTCCCTTTGTAC+AGG | 0.508196 | 4.4:+14364494 | MS.gene023528:CDS |
| AGAAGCTGGTGGAGGGTGTG+AGG | 0.510536 | 4.4:-14361378 | None:intergenic |
| AGAGTGGTGATGATCATAGA+TGG | 0.510649 | 4.4:-14361409 | None:intergenic |
| GTACTGGTCTCTTGTTCTAA+AGG | 0.511821 | 4.4:+14363826 | MS.gene023528:CDS |
| AGGCCAGCAATAGACGTCTC+CGG | 0.518061 | 4.4:-14366016 | None:intergenic |
| AAGTACAGAACCAGGAAGCC+AGG | 0.518355 | 4.4:-14363924 | None:intergenic |
| ATCAACATTTGAAGTTTCCC+CGG | 0.519896 | 4.4:-14367006 | None:intergenic |
| TATAGTAGAGAAGCTGGTGG+AGG | 0.523030 | 4.4:-14361386 | None:intergenic |
| TACAAATTTAGGTTGGGTGA+TGG | 0.523734 | 4.4:+14366038 | MS.gene023528:CDS |
| GCTATCATCTGGAGGGATGA+AGG | 0.523832 | 4.4:+14364007 | MS.gene023528:CDS |
| CAGGCAATCCGCACAAACCT+GGG | 0.524737 | 4.4:+14363565 | MS.gene023528:CDS |
| CTTGCATCCTGTTATATCAT+GGG | 0.525021 | 4.4:+14367095 | MS.gene023528:CDS |
| GAAGCTGGTGGAGGGTGTGA+GGG | 0.525825 | 4.4:-14361377 | None:intergenic |
| GGCCAGCAATAGACGTCTCC+GGG | 0.527044 | 4.4:-14366015 | None:intergenic |
| AATGTATGGAGGGCTTGGAT+TGG | 0.527992 | 4.4:+14366890 | MS.gene023528:CDS |
| AATTGAGCGCGTCTGTGATA+GGG | 0.528177 | 4.4:+14368397 | MS.gene023528:CDS |
| CTCCGTGTTTCCGATGCAAA+GGG | 0.530604 | 4.4:+14364328 | MS.gene023528:CDS |
| CACTCTCCTCAGCTGACACA+TGG | 0.531737 | 4.4:+14361316 | MS.gene023528:CDS |
| AGATGGTATAGTAGAGAAGC+TGG | 0.532142 | 4.4:-14361392 | None:intergenic |
| ATATATAATCACAGCATTGA+CGG | 0.539607 | 4.4:-14364230 | None:intergenic |
| GCTGATGATACCATGAATCT+TGG | 0.539803 | 4.4:+14368094 | MS.gene023528:CDS |
| CCTCCGTGTTTCCGATGCAA+AGG | 0.541069 | 4.4:+14364327 | MS.gene023528:CDS |
| CATGGATCTCCGCTAGGTCA+TGG | 0.541719 | 4.4:+14366114 | MS.gene023528:CDS |
| GAACATGACTTATCATGGAA+TGG | 0.541816 | 4.4:+14365625 | MS.gene023528:CDS |
| CCGCTTCCAACAAAATACTA+AGG | 0.542322 | 4.4:+14368795 | MS.gene023528:CDS |
| CCCTTCCTTGCACAACAAGA+TGG | 0.543979 | 4.4:-14368072 | None:intergenic |
| TAGCAGGTTCTTCGAAGACA+TGG | 0.543982 | 4.4:+14368022 | MS.gene023528:intron |
| AAGCATGAATATAAAAGAGT+TGG | 0.545939 | 4.4:-14366063 | None:intergenic |
| AACACATCCTGCTAAAACAA+TGG | 0.550057 | 4.4:-14364257 | None:intergenic |
| TATACCTTTCCTTTGTAAAG+CGG | 0.551050 | 4.4:-14367511 | None:intergenic |
| ACGAAGTGCTGCAGATGGAT+GGG | 0.552217 | 4.4:+14365975 | MS.gene023528:CDS |
| CCTTAAAGTAAATCTTCTCA+TGG | 0.553450 | 4.4:-14367483 | None:intergenic |
| AAACCCATAATTGAATGTTG+TGG | 0.554187 | 4.4:+14367062 | MS.gene023528:CDS |
| ATGATGGTTTGAGGACTCTA+CGG | 0.555176 | 4.4:-14361353 | None:intergenic |
| GAGGAGGAGAAGAAGAAGAG+TGG | 0.555603 | 4.4:-14361425 | None:intergenic |
| TACCCTTTGCATCGGAAACA+CGG | 0.557533 | 4.4:-14364330 | None:intergenic |
| AAGGGAATGCCGCTTTACAA+AGG | 0.566824 | 4.4:+14367502 | MS.gene023528:CDS |
| GTATCTAAAATGCAATTTGG+AGG | 0.568095 | 4.4:-14363872 | None:intergenic |
| GGTCGTCTCATGGAAAATCA+TGG | 0.570483 | 4.4:+14363586 | MS.gene023528:CDS |
| CCCATACGAAGTGCTGCAGA+TGG | 0.572789 | 4.4:+14365970 | MS.gene023528:CDS |
| GATGATACCATGAATCTTGG+TGG | 0.578979 | 4.4:+14368097 | MS.gene023528:CDS |
| CTGTACCATGGATCTCCGCT+AGG | 0.582836 | 4.4:+14366108 | MS.gene023528:CDS |
| CGTGAAAATACCCTTTGCAT+CGG | 0.583654 | 4.4:-14364338 | None:intergenic |
| CCAACATCATTGTCTATCAC+AGG | 0.584997 | 4.4:-14365589 | None:intergenic |
| ATAATCAAAAGAACTGTAGG+AGG | 0.585477 | 4.4:+14368049 | MS.gene023528:CDS |
| TGGTATAGTAGAGAAGCTGG+TGG | 0.589291 | 4.4:-14361389 | None:intergenic |
| AGAGAAGGGAACCAATAAAG+AGG | 0.590321 | 4.4:-14361444 | None:intergenic |
| GCAACTCTTGCTCTGTACCA+TGG | 0.591404 | 4.4:+14366096 | MS.gene023528:CDS |
| CCATCTGCAGCACTTCGTAT+GGG | 0.591719 | 4.4:-14365970 | None:intergenic |
| CCATCTTGTTGTGCAAGGAA+GGG | 0.596864 | 4.4:+14368072 | MS.gene023528:CDS |
| ATGGGCGAAAGTTGAGTCCA+AGG | 0.598596 | 4.4:-14365952 | None:intergenic |
| CCCATAATTGAATGTTGTGG+AGG | 0.600562 | 4.4:+14367065 | MS.gene023528:CDS |
| TTTCTTCAGAGTTTCCGCAT+CGG | 0.601479 | 4.4:-14368522 | None:intergenic |
| ATAGTAGAGAAGCTGGTGGA+GGG | 0.601851 | 4.4:-14361385 | None:intergenic |
| TTCTTCCAGTCGAGTCGTTG+AGG | 0.601975 | 4.4:+14365540 | MS.gene023528:intron |
| CTAAATGCTCCAAAAGCTTG+AGG | 0.602109 | 4.4:-14367131 | None:intergenic |
| CATGACCTAGCGGAGATCCA+TGG | 0.602172 | 4.4:-14366113 | None:intergenic |
| CAGTTGCTCCCATATATACA+GGG | 0.602896 | 4.4:-14367441 | None:intergenic |
| TTAGAGTGACTTACAGAGAA+GGG | 0.603250 | 4.4:-14361458 | None:intergenic |
| GAAGCGGTTCTAGGAAACAT+AGG | 0.603896 | 4.4:-14368779 | None:intergenic |
| GCAATTTGGAGGTTCGACAA+AGG | 0.606887 | 4.4:-14363861 | None:intergenic |
| AGTAATAGGATCCTTGTACA+AGG | 0.606933 | 4.4:-14363629 | None:intergenic |
| AGTGTTTCTGCTGCAAATGG+AGG | 0.607240 | 4.4:+14368452 | MS.gene023528:CDS |
| GGAGGCCATCTTGTTGTGCA+AGG | 0.609728 | 4.4:+14368067 | MS.gene023528:CDS |
| GCTTTAATCGATATTCAACC+CGG | 0.613037 | 4.4:+14365997 | MS.gene023528:CDS |
| TGAGACGACCCAGGTTTGTG+CGG | 0.620787 | 4.4:-14363573 | None:intergenic |
| TGTACCTTGTGTTGGTGAAG+CGG | 0.622459 | 4.4:+14367411 | MS.gene023528:CDS |
| ATTAGAGTGACTTACAGAGA+AGG | 0.622491 | 4.4:-14361459 | None:intergenic |
| TAGGACTTCATATTAAGAGG+TGG | 0.624381 | 4.4:+14364472 | MS.gene023528:intron |
| AGAGTATAGCTATCATCTGG+AGG | 0.624416 | 4.4:+14363999 | MS.gene023528:CDS |
| ATAGATGCCAATTTCTCCAA+GGG | 0.625023 | 4.4:+14364178 | MS.gene023528:CDS |
| AATAGATGCCAATTTCTCCA+AGG | 0.627081 | 4.4:+14364177 | MS.gene023528:CDS |
| CCTGTGATAGACAATGATGT+TGG | 0.628362 | 4.4:+14365589 | MS.gene023528:CDS |
| GAAGAGTACACAATGTATGG+AGG | 0.628430 | 4.4:+14366879 | MS.gene023528:CDS |
| GAAGGGAACCAATAAAGAGG+AGG | 0.628826 | 4.4:-14361441 | None:intergenic |
| GTGGCGCCATGTGTCAGCTG+AGG | 0.628901 | 4.4:-14361322 | None:intergenic |
| AAGAGTACACAATGTATGGA+GGG | 0.632020 | 4.4:+14366880 | MS.gene023528:CDS |
| GAGTATAGCTATCATCTGGA+GGG | 0.636952 | 4.4:+14364000 | MS.gene023528:CDS |
| TGAGGACTCTACGGCTGACG+AGG | 0.637199 | 4.4:-14361344 | None:intergenic |
| GCAATATTAAGTACAGAACC+AGG | 0.641645 | 4.4:-14363932 | None:intergenic |
| GCTGAGGAGAGTGAAGAGAG+TGG | 0.642669 | 4.4:-14361306 | None:intergenic |
| CCAGATGATGTACCTTGTGT+TGG | 0.644504 | 4.4:+14367403 | MS.gene023528:CDS |
| TTGCATCCTGTTATATCATG+GGG | 0.646094 | 4.4:+14367096 | MS.gene023528:CDS |
| GGACTCTACGGCTGACGAGG+TGG | 0.659775 | 4.4:-14361341 | None:intergenic |
| AATGCCGCTTTACAAAGGAA+AGG | 0.670295 | 4.4:+14367507 | MS.gene023528:CDS |
| TTTCCAAAACCATGACCTAG+CGG | 0.677256 | 4.4:-14366123 | None:intergenic |
| TCTTCTGACCCATCAAAACA+CGG | 0.682602 | 4.4:+14363896 | MS.gene023528:CDS |
| GACAGGATACGATTCCGATG+CGG | 0.708590 | 4.4:+14368508 | MS.gene023528:CDS |
| AAGCCCGCTTCACCAACACA+AGG | 0.728951 | 4.4:-14367415 | None:intergenic |
| CCTTTGCATCGGAAACACGG+AGG | 0.773889 | 4.4:-14364327 | None:intergenic |
| TCTGACCCATCAAAACACGG+AGG | 0.817018 | 4.4:+14363899 | MS.gene023528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14361204 | 14368871 | 14361204 | ID=MS.gene023528 |
| chr4.4 | mRNA | 14361204 | 14368871 | 14361204 | ID=MS.gene023528.t1;Parent=MS.gene023528 |
| chr4.4 | exon | 14361204 | 14361466 | 14361204 | ID=MS.gene023528.t1.exon1;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14361204 | 14361466 | 14361204 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14363561 | 14363693 | 14363561 | ID=MS.gene023528.t1.exon2;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14363561 | 14363693 | 14363561 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14363824 | 14364086 | 14363824 | ID=MS.gene023528.t1.exon3;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14363824 | 14364086 | 14363824 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14364162 | 14364363 | 14364162 | ID=MS.gene023528.t1.exon4;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14364162 | 14364363 | 14364162 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14364475 | 14364515 | 14364475 | ID=MS.gene023528.t1.exon5;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14364475 | 14364515 | 14364475 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14365549 | 14365677 | 14365549 | ID=MS.gene023528.t1.exon6;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14365549 | 14365677 | 14365549 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14365786 | 14365859 | 14365786 | ID=MS.gene023528.t1.exon7;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14365786 | 14365859 | 14365786 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14365935 | 14366155 | 14365935 | ID=MS.gene023528.t1.exon8;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14365935 | 14366155 | 14365935 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14366829 | 14366923 | 14366829 | ID=MS.gene023528.t1.exon9;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14366829 | 14366923 | 14366829 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14366992 | 14367208 | 14366992 | ID=MS.gene023528.t1.exon10;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14366992 | 14367208 | 14366992 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14367403 | 14367528 | 14367403 | ID=MS.gene023528.t1.exon11;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14367403 | 14367528 | 14367403 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14368028 | 14368126 | 14368028 | ID=MS.gene023528.t1.exon12;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14368028 | 14368126 | 14368028 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14368383 | 14368589 | 14368383 | ID=MS.gene023528.t1.exon13;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14368383 | 14368589 | 14368383 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| chr4.4 | exon | 14368758 | 14368871 | 14368758 | ID=MS.gene023528.t1.exon14;Parent=MS.gene023528.t1 |
| chr4.4 | CDS | 14368758 | 14368871 | 14368758 | ID=cds.MS.gene023528.t1;Parent=MS.gene023528.t1 |
| Gene Sequence |
| Protein sequence |
