Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83231.t1 | XP_013463987.1 | 97.4 | 726 | 19 | 0 | 1 | 726 | 1 | 726 | 0.00E+00 | 1432.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83231.t1 | F4KBF3 | 68.4 | 727 | 223 | 3 | 1 | 726 | 1 | 721 | 8.2e-299 | 1027.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83231.t1 | A0A072V870 | 97.4 | 726 | 19 | 0 | 1 | 726 | 1 | 726 | 0.0e+00 | 1432.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08655 | MS.gene83231 | PPI |
| MS.gene83231 | MS.gene023528 | PPI |
| MS.gene019120 | MS.gene83231 | PPI |
| MS.gene023555 | MS.gene83231 | PPI |
| MS.gene22255 | MS.gene83231 | PPI |
| MS.gene83231 | MS.gene049882 | PPI |
| MS.gene09070 | MS.gene83231 | PPI |
| MS.gene83231 | MS.gene92059 | PPI |
| MS.gene08775 | MS.gene83231 | PPI |
| MS.gene46997 | MS.gene83231 | PPI |
| MS.gene08927 | MS.gene83231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83231.t1 | MTR_2g056120 | 97.383 | 726 | 19 | 0 | 1 | 726 | 1 | 726 | 0.0 | 1464 |
| MS.gene83231.t1 | MTR_8g085680 | 51.233 | 730 | 337 | 11 | 1 | 720 | 1 | 721 | 0.0 | 726 |
| MS.gene83231.t1 | MTR_8g086050 | 50.408 | 736 | 335 | 11 | 1 | 720 | 1 | 722 | 0.0 | 703 |
| MS.gene83231.t1 | MTR_8g085680 | 51.070 | 701 | 324 | 11 | 1 | 691 | 1 | 692 | 0.0 | 691 |
| MS.gene83231.t1 | MTR_8g086050 | 50.395 | 633 | 292 | 9 | 1 | 620 | 1 | 624 | 0.0 | 601 |
| MS.gene83231.t1 | MTR_8g086050 | 49.082 | 599 | 285 | 9 | 1 | 587 | 1 | 591 | 0.0 | 553 |
| MS.gene83231.t1 | MTR_8g085680 | 50.090 | 553 | 259 | 10 | 1 | 543 | 1 | 546 | 5.48e-178 | 522 |
| MS.gene83231.t1 | MTR_7g084850 | 25.342 | 584 | 385 | 20 | 166 | 720 | 162 | 723 | 1.13e-33 | 138 |
| MS.gene83231.t1 | MTR_1g063110 | 23.616 | 542 | 352 | 20 | 190 | 713 | 43 | 540 | 6.45e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83231.t1 | AT5G23050 | 68.363 | 727 | 223 | 3 | 1 | 726 | 1 | 721 | 0.0 | 1021 |
| MS.gene83231.t1 | AT5G23050 | 68.136 | 590 | 181 | 3 | 1 | 589 | 1 | 584 | 0.0 | 817 |
| MS.gene83231.t1 | AT1G55320 | 48.834 | 729 | 351 | 9 | 3 | 720 | 2 | 719 | 0.0 | 702 |
| MS.gene83231.t1 | AT1G55320 | 55.357 | 504 | 221 | 3 | 219 | 720 | 2 | 503 | 0.0 | 568 |
| MS.gene83231.t1 | AT5G36880 | 25.719 | 661 | 427 | 25 | 102 | 726 | 46 | 678 | 2.63e-34 | 140 |
| MS.gene83231.t1 | AT5G36880 | 25.719 | 661 | 427 | 25 | 102 | 726 | 46 | 678 | 2.63e-34 | 140 |
| MS.gene83231.t1 | AT5G36880 | 25.719 | 661 | 427 | 25 | 102 | 726 | 46 | 678 | 2.63e-34 | 140 |
| MS.gene83231.t1 | AT5G36880 | 25.719 | 661 | 427 | 25 | 102 | 726 | 46 | 678 | 2.63e-34 | 140 |
| MS.gene83231.t1 | AT5G36880 | 25.653 | 651 | 424 | 24 | 102 | 720 | 96 | 718 | 3.81e-34 | 140 |
| MS.gene83231.t1 | AT5G36880 | 26.087 | 575 | 369 | 23 | 102 | 644 | 46 | 596 | 7.01e-28 | 119 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGGGGTAAAGAGTTTC+TGG | 0.130757 | 2.4:-34654339 | MS.gene83231:CDS |
| GTTTCATACCTGTACAAATT+TGG | 0.172757 | 2.4:+34645605 | None:intergenic |
| GGTTTGAGACTGAAAATTTC+TGG | 0.177813 | 2.4:+34654276 | None:intergenic |
| TTGTATTGTTTCAGGTTTAT+TGG | 0.214001 | 2.4:-34653795 | MS.gene83231:intron |
| TATGGTTGCTTCAAAGATTA+TGG | 0.245998 | 2.4:-34655127 | MS.gene83231:CDS |
| AAACTCTAAATCCATTATTC+AGG | 0.260045 | 2.4:-34643583 | MS.gene83231:CDS |
| CTCTTGGATCCCTTATGCTT+GGG | 0.260664 | 2.4:-34644533 | MS.gene83231:CDS |
| GTTTCTGGGTTCACTGTATA+AGG | 0.284467 | 2.4:-34654324 | MS.gene83231:CDS |
| GCTTCAATGGCTTTGTATAA+TGG | 0.284939 | 2.4:-34645651 | MS.gene83231:CDS |
| AAATCAGCAAAGCCTGTAAT+TGG | 0.298240 | 2.4:+34654299 | None:intergenic |
| TTGGTCCATGGAATTGCTTT+TGG | 0.305055 | 2.4:+34645807 | None:intergenic |
| CCAAGTGGTCAATGGCTTCC+TGG | 0.309999 | 2.4:-34653679 | MS.gene83231:CDS |
| CTGTATAAGGATCCAATTAC+AGG | 0.315621 | 2.4:-34654311 | MS.gene83231:CDS |
| TTTCATCAGATGCTGTATTA+TGG | 0.322063 | 2.4:-34655145 | MS.gene83231:CDS |
| ATAAAGCCCTCCCTCTTTAC+AGG | 0.326956 | 2.4:-34646500 | MS.gene83231:intron |
| TACCTAGCTATCGTTCTTGC+AGG | 0.327370 | 2.4:-34648381 | MS.gene83231:CDS |
| TACAAATTGCAGCACATTGC+CGG | 0.330702 | 2.4:+34644957 | None:intergenic |
| GGTATCCAAGCGGGCGGGTC+AGG | 0.332425 | 2.4:+34655103 | None:intergenic |
| TTAATAAGTACCCTGAATAA+TGG | 0.347220 | 2.4:+34643572 | None:intergenic |
| GTATATGCATCATTGTTAAA+TGG | 0.350280 | 2.4:-34645675 | MS.gene83231:CDS |
| TGCGTAACGGTGACCTTTCA+TGG | 0.358514 | 2.4:-34646298 | MS.gene83231:CDS |
| TGAATGACACGGTGATAATA+TGG | 0.360894 | 2.4:-34653603 | MS.gene83231:CDS |
| GCTCTTGGATCCCTTATGCT+TGG | 0.362666 | 2.4:-34644534 | MS.gene83231:CDS |
| TTGTCACGTAAGATGCATTC+AGG | 0.363220 | 2.4:+34653730 | None:intergenic |
| CTGCTGAATGCTGATCATTA+TGG | 0.368454 | 2.4:-34644498 | MS.gene83231:CDS |
| CCACAAAATGTTCCAGGAAT+AGG | 0.388472 | 2.4:-34644564 | MS.gene83231:CDS |
| CCTTCTCATAACCTTGTTTG+AGG | 0.389200 | 2.4:+34643439 | None:intergenic |
| TGCGTATGCTCTTGAATCAC+TGG | 0.389707 | 2.4:-34648466 | MS.gene83231:CDS |
| TGAAACGAAAACGGAAGTTC+AGG | 0.392374 | 2.4:+34655163 | None:intergenic |
| ATTGTTAAATGGAGCTTCAA+TGG | 0.395832 | 2.4:-34645664 | MS.gene83231:CDS |
| CCACCACAATATTCAATGAT+AGG | 0.395928 | 2.4:+34645050 | None:intergenic |
| TGCTCTTGAATCACTGGGTC+TGG | 0.402184 | 2.4:-34648460 | MS.gene83231:CDS |
| ATTTCAAGGGAATGCCTCTC+TGG | 0.405496 | 2.4:-34644470 | MS.gene83231:CDS |
| GTTTGCTGGCCCACTAATCT+TGG | 0.407233 | 2.4:-34645720 | MS.gene83231:CDS |
| AACTATTGCCATAGGAGATT+GGG | 0.409276 | 2.4:+34646355 | None:intergenic |
| CACTAATCTTGGATGGATGA+TGG | 0.410831 | 2.4:-34645709 | MS.gene83231:CDS |
| AGAGCTAACTCACCTATTCC+TGG | 0.415085 | 2.4:+34644552 | None:intergenic |
| TTGTATATTCTTGCTGATGA+TGG | 0.415175 | 2.4:-34644939 | MS.gene83231:CDS |
| CAGAATTGCTTGAATTTGAA+TGG | 0.415404 | 2.4:-34653637 | MS.gene83231:CDS |
| CTCCAGCTCCGTACAAGACT+TGG | 0.417401 | 2.4:+34645290 | None:intergenic |
| AGGAATTGCGTCAAGAGGTT+TGG | 0.417698 | 2.4:-34653534 | MS.gene83231:intron |
| TAACTATTGCCATAGGAGAT+TGG | 0.426580 | 2.4:+34646354 | None:intergenic |
| TGTTTGATGCCCCAAGCATA+AGG | 0.427358 | 2.4:+34644523 | None:intergenic |
| TCATTATGGTGTCTATTTCA+AGG | 0.428112 | 2.4:-34644484 | MS.gene83231:CDS |
| ATTGTGGTGGTACAGAGATT+GGG | 0.434744 | 2.4:-34645037 | MS.gene83231:CDS |
| TATTGTGGTGGTACAGAGAT+TGG | 0.435937 | 2.4:-34645038 | MS.gene83231:CDS |
| GCCATCGGGATACCACCTTC+TGG | 0.438657 | 2.4:-34643710 | MS.gene83231:CDS |
| ACGGAATTAATAGAAATTCA+TGG | 0.438816 | 2.4:-34655235 | MS.gene83231:CDS |
| CCAGGAAGCCATTGACCACT+TGG | 0.443223 | 2.4:+34653679 | None:intergenic |
| ACTAATCTTGGATGGATGAT+GGG | 0.444823 | 2.4:-34645708 | MS.gene83231:CDS |
| ACGCAGTTGCATGCTGAATC+CGG | 0.445166 | 2.4:+34646316 | None:intergenic |
| AATTCCAAGGGATTCAATAT+CGG | 0.447053 | 2.4:+34655294 | None:intergenic |
| GCAGATGATACAATGAATCT+TGG | 0.448260 | 2.4:-34644301 | MS.gene83231:CDS |
| ACCACAGATGTACAATTCAT+TGG | 0.450525 | 2.4:+34648408 | None:intergenic |
| CGGCTTTGCCAAATTTGTAC+AGG | 0.453722 | 2.4:-34645613 | MS.gene83231:intron |
| ATTCTACATCCGGCTATGAT+TGG | 0.455503 | 2.4:-34645259 | MS.gene83231:CDS |
| TTACAGCCACAAAATGTTCC+AGG | 0.457728 | 2.4:-34644570 | MS.gene83231:intron |
| GTAAAGGTGATGTAGTTTGC+TGG | 0.460233 | 2.4:-34645734 | MS.gene83231:CDS |
| CACAAGATTTACAGAAATTG+AGG | 0.460742 | 2.4:-34643631 | MS.gene83231:CDS |
| ACCTTGTTTGAGGCTGTCCT+TGG | 0.462874 | 2.4:+34643449 | None:intergenic |
| CCATTGACCACTTGGGTATG+AGG | 0.465477 | 2.4:+34653687 | None:intergenic |
| TTCCAAGTCTTGTACGGAGC+TGG | 0.467703 | 2.4:-34645292 | MS.gene83231:CDS |
| ATGGTCCTGACCCGCCCGCT+TGG | 0.470246 | 2.4:-34655108 | MS.gene83231:CDS |
| AACTCTAAATCCATTATTCA+GGG | 0.476877 | 2.4:-34643582 | MS.gene83231:intron |
| ATTACTGCAGGCTCAGTCAT+TGG | 0.477853 | 2.4:-34644994 | MS.gene83231:CDS |
| AAATTCAAGCAATTCTGTGC+AGG | 0.479919 | 2.4:+34653643 | None:intergenic |
| TGCAGATGCGTGGTGCCACT+TGG | 0.483318 | 2.4:-34645763 | MS.gene83231:CDS |
| GTTGTTTCGATAGGTGAGTT+CGG | 0.483788 | 2.4:-34643786 | MS.gene83231:intron |
| GCTATGATTGGTCTGCTATC+CGG | 0.484099 | 2.4:-34645247 | MS.gene83231:intron |
| CTGAATCCGGAGCCTCTAGT+TGG | 0.485876 | 2.4:+34646329 | None:intergenic |
| TGCAAAAGTCATATTTACTC+AGG | 0.486038 | 2.4:-34648289 | MS.gene83231:intron |
| CGAACGTAGATGAATACCTT+TGG | 0.486204 | 2.4:-34645097 | MS.gene83231:CDS |
| CTCAATTTCTGTAAATCTTG+TGG | 0.487036 | 2.4:+34643632 | None:intergenic |
| TCGGGATACCACCTTCTGGT+GGG | 0.487293 | 2.4:-34643706 | MS.gene83231:CDS |
| TACGGGTCGGGTATCCAAGC+GGG | 0.487626 | 2.4:+34655094 | None:intergenic |
| TGTAGTTGCTTTGCATCCAC+TGG | 0.489686 | 2.4:-34645128 | MS.gene83231:intron |
| TTGTATAATGGATCCCCACT+TGG | 0.489785 | 2.4:-34645639 | MS.gene83231:CDS |
| GAATCACTGGGTCTGGAGAA+AGG | 0.491276 | 2.4:-34648453 | MS.gene83231:CDS |
| GGTTTATTGGAAAACTGTGC+TGG | 0.493042 | 2.4:-34653782 | MS.gene83231:CDS |
| TTGTGGAAACAGCTGCCATC+GGG | 0.497471 | 2.4:-34643724 | MS.gene83231:CDS |
| CTGTACAAATTTGGCAAAGC+CGG | 0.498742 | 2.4:+34645614 | None:intergenic |
| GTATCCGATATTGAATCCCT+TGG | 0.499341 | 2.4:-34655298 | MS.gene83231:CDS |
| AATGAATCTTGGAGGAATCA+AGG | 0.499716 | 2.4:-34644290 | MS.gene83231:intron |
| GGAATAGGTGAGTTAGCTCT+TGG | 0.500136 | 2.4:-34644549 | MS.gene83231:CDS |
| ATGTTTGTAAATGTTTCTAC+TGG | 0.500526 | 2.4:+34646014 | None:intergenic |
| AATGGATCCCCACTTGGCTC+CGG | 0.500651 | 2.4:-34645633 | MS.gene83231:CDS |
| ATCGGGATACCACCTTCTGG+TGG | 0.501807 | 2.4:-34643707 | MS.gene83231:CDS |
| CATTATGGTGTCTATTTCAA+GGG | 0.501919 | 2.4:-34644483 | MS.gene83231:CDS |
| AAGGGAATGCCTCTCTGGAA+TGG | 0.502368 | 2.4:-34644465 | MS.gene83231:CDS |
| GATGAATACCTTTGGCTGAT+GGG | 0.504710 | 2.4:-34645089 | MS.gene83231:CDS |
| AGATGAATACCTTTGGCTGA+TGG | 0.505224 | 2.4:-34645090 | MS.gene83231:CDS |
| AGAAATGCAAATTCTACATC+CGG | 0.506535 | 2.4:-34645269 | MS.gene83231:CDS |
| GTTATCCCAACTAGAGGCTC+CGG | 0.511622 | 2.4:-34646335 | MS.gene83231:CDS |
| AGCATCTGATGAAACGAAAA+CGG | 0.513623 | 2.4:+34655154 | None:intergenic |
| GCTGGCCCACTAATCTTGGA+TGG | 0.513777 | 2.4:-34645716 | MS.gene83231:CDS |
| CCTCATACCCAAGTGGTCAA+TGG | 0.513890 | 2.4:-34653687 | MS.gene83231:CDS |
| GTTAAGAGAGCATACGGGTC+GGG | 0.514536 | 2.4:+34655082 | None:intergenic |
| CGGGATACCACCTTCTGGTG+GGG | 0.515510 | 2.4:-34643705 | MS.gene83231:CDS |
| AAGAGGGGTAAAGAGTTTCT+GGG | 0.520650 | 2.4:-34654338 | MS.gene83231:CDS |
| GTGTGATTCCAAGTCTTGTA+CGG | 0.520853 | 2.4:-34645298 | MS.gene83231:CDS |
| CGGAGTAGATAGTAATATTG+TGG | 0.522745 | 2.4:-34643741 | MS.gene83231:CDS |
| AGTGTTACATTGACGAATGT+TGG | 0.524475 | 2.4:-34654374 | MS.gene83231:CDS |
| TTGTGGTGGTACAGAGATTG+GGG | 0.524936 | 2.4:-34645036 | MS.gene83231:CDS |
| TGAATCCGGAGCCTCTAGTT+GGG | 0.525577 | 2.4:+34646330 | None:intergenic |
| GATGCTAAAGTAACAATGCT+TGG | 0.525722 | 2.4:-34645320 | MS.gene83231:CDS |
| CATCATCCATCCAAGATTAG+TGG | 0.527349 | 2.4:+34645710 | None:intergenic |
| CGTGGTCTCTCGCAATTCCA+AGG | 0.529030 | 2.4:+34655281 | None:intergenic |
| TGGTCGGTTGCTTGAGAAGA+GGG | 0.529807 | 2.4:-34654354 | MS.gene83231:CDS |
| CTCAAACAAGGTTATGAGAA+GGG | 0.538467 | 2.4:-34643438 | MS.gene83231:CDS |
| GGGATACCACCTTCTGGTGG+GGG | 0.539711 | 2.4:-34643704 | MS.gene83231:CDS |
| AAGCCTATCATTGAATATTG+TGG | 0.541124 | 2.4:-34645053 | MS.gene83231:CDS |
| GAAACGAAAACGGAAGTTCA+GGG | 0.542308 | 2.4:+34655164 | None:intergenic |
| TCTTGGATCCCTTATGCTTG+GGG | 0.542370 | 2.4:-34644532 | MS.gene83231:CDS |
| TGTGGATGCCCAATCTCCTA+TGG | 0.543453 | 2.4:-34646363 | MS.gene83231:CDS |
| CGTGACAATCCTGGTGAGGA+TGG | 0.546895 | 2.4:-34653715 | MS.gene83231:CDS |
| TGTATATTCTTGCTGATGAT+GGG | 0.547405 | 2.4:-34644938 | MS.gene83231:CDS |
| TGGCGCAAAACTATCAGCTA+TGG | 0.551994 | 2.4:+34648344 | None:intergenic |
| GGATACAGAGATAGAAGATA+AGG | 0.552282 | 2.4:+34655315 | None:intergenic |
| GATGATACAATGAATCTTGG+AGG | 0.554940 | 2.4:-34644298 | MS.gene83231:CDS |
| GAGGCTGTCCTTGGAAGAGA+TGG | 0.555835 | 2.4:+34643458 | None:intergenic |
| GGTCGGGTATCCAAGCGGGC+GGG | 0.559168 | 2.4:+34655098 | None:intergenic |
| AAGATAGTCTCCCTCTTCAA+AGG | 0.559454 | 2.4:-34653567 | MS.gene83231:CDS |
| TGGCAAAGCCGGAGCCAAGT+GGG | 0.563691 | 2.4:+34645625 | None:intergenic |
| GTGATCCAAAAGCAATTCCA+TGG | 0.566214 | 2.4:-34645812 | MS.gene83231:CDS |
| TGTCAGGATCTCATACTTCG+TGG | 0.566472 | 2.4:-34646525 | MS.gene83231:intron |
| CGTCACTGGATCATTACTGC+AGG | 0.568727 | 2.4:-34645006 | MS.gene83231:CDS |
| TTGGATGGATGATGGGGCCA+TGG | 0.568895 | 2.4:-34645701 | MS.gene83231:CDS |
| AGAGGAGTAATATTGGTCCA+TGG | 0.570021 | 2.4:+34645795 | None:intergenic |
| ATCATCCATCCAAGATTAGT+GGG | 0.571504 | 2.4:+34645711 | None:intergenic |
| ACAGCTACAGACAACTGCTC+AGG | 0.571958 | 2.4:+34643680 | None:intergenic |
| GCAGGATTAATCGATGCTCC+AGG | 0.573116 | 2.4:+34653661 | None:intergenic |
| AACTCTCCACCTTTGTCTCA+CGG | 0.577159 | 2.4:-34655254 | MS.gene83231:CDS |
| CTATTAATTCCGTGAGACAA+AGG | 0.579081 | 2.4:+34655245 | None:intergenic |
| TACGTTCGATGCTTCTCCAG+TGG | 0.579680 | 2.4:+34645112 | None:intergenic |
| AAAACGGAAGTTCAGGGCTG+AGG | 0.582396 | 2.4:+34655170 | None:intergenic |
| TCAAGTGTCATCCTTTGAAG+AGG | 0.583835 | 2.4:+34653556 | None:intergenic |
| ATTGTGGAAACAGCTGCCAT+CGG | 0.586223 | 2.4:-34643725 | MS.gene83231:CDS |
| GTTTGATGCCCCAAGCATAA+GGG | 0.591517 | 2.4:+34644524 | None:intergenic |
| GTTGGGATAACTATTGCCAT+AGG | 0.593786 | 2.4:+34646347 | None:intergenic |
| GTCCTTGGAAGAGATGGCAC+TGG | 0.593944 | 2.4:+34643464 | None:intergenic |
| TGCATCTTACGTGACAATCC+TGG | 0.597430 | 2.4:-34653724 | MS.gene83231:CDS |
| GGGTCGGGTATCCAAGCGGG+CGG | 0.598636 | 2.4:+34655097 | None:intergenic |
| CGCCACGTGAAATATCAACC+AGG | 0.599497 | 2.4:-34648326 | MS.gene83231:CDS |
| AATGATGCATATACTAGCCA+TGG | 0.600506 | 2.4:+34645684 | None:intergenic |
| GATAGCAGACCAATCATAGC+CGG | 0.600611 | 2.4:+34645250 | None:intergenic |
| ACTTGAGGAATTGCGTCAAG+AGG | 0.601240 | 2.4:-34653539 | MS.gene83231:CDS |
| CTAATCTTGGATGGATGATG+GGG | 0.601678 | 2.4:-34645707 | MS.gene83231:CDS |
| GTATTTGAGCGTACTTCTAG+AGG | 0.601910 | 2.4:-34644346 | MS.gene83231:CDS |
| GAGGATGAACCATCCTCACC+AGG | 0.602769 | 2.4:+34653706 | None:intergenic |
| TTGGTCGGTTGCTTGAGAAG+AGG | 0.603512 | 2.4:-34654355 | MS.gene83231:CDS |
| TTCAGCATGCAACTGCGTAA+CGG | 0.605673 | 2.4:-34646311 | MS.gene83231:CDS |
| TCCCAAATGCAGTAGAGTTG+TGG | 0.606869 | 2.4:-34646381 | MS.gene83231:intron |
| TAAAAGCTGCTGCAGATGCG+TGG | 0.607205 | 2.4:-34645773 | MS.gene83231:CDS |
| TACCAGTGCCATCTCTTCCA+AGG | 0.607221 | 2.4:-34643466 | MS.gene83231:CDS |
| GCGTATGCTCTTGAATCACT+GGG | 0.609635 | 2.4:-34648465 | MS.gene83231:CDS |
| CCTCAAACAAGGTTATGAGA+AGG | 0.610766 | 2.4:-34643439 | MS.gene83231:CDS |
| CTTGCTGATGTTCTGCCACG+TGG | 0.613798 | 2.4:+34655198 | None:intergenic |
| TCATGTAAAATACAGAGGCA+AGG | 0.615184 | 2.4:-34646057 | MS.gene83231:intron |
| CAAGTGTCATCCTTTGAAGA+GGG | 0.616887 | 2.4:+34653557 | None:intergenic |
| GGCAAAGCCGGAGCCAAGTG+GGG | 0.618733 | 2.4:+34645626 | None:intergenic |
| GTGGTCTCTCGCAATTCCAA+GGG | 0.619247 | 2.4:+34655282 | None:intergenic |
| TCCAAGGACAGCCTCAAACA+AGG | 0.622443 | 2.4:-34643450 | MS.gene83231:CDS |
| TCTTCAAAGGATGACACTTG+AGG | 0.625524 | 2.4:-34653554 | MS.gene83231:CDS |
| TGCCACTTGGATGTTCGTAA+AGG | 0.627767 | 2.4:-34645750 | MS.gene83231:CDS |
| CAGGAAGCCATTGACCACTT+GGG | 0.627950 | 2.4:+34653680 | None:intergenic |
| AGCCTGGTTGATATTTCACG+TGG | 0.628870 | 2.4:+34648324 | None:intergenic |
| GCAATAGTTATCCCAACTAG+AGG | 0.631298 | 2.4:-34646341 | MS.gene83231:CDS |
| CAAAAGAAATTTGAATGACA+CGG | 0.631430 | 2.4:-34653614 | MS.gene83231:CDS |
| GAAATTGAACGCATATGCAA+CGG | 0.631869 | 2.4:-34643761 | MS.gene83231:CDS |
| AAGCTCTTCCCATCAGCCAA+AGG | 0.637210 | 2.4:+34645081 | None:intergenic |
| AACCTGCAAGAACGATAGCT+AGG | 0.637454 | 2.4:+34648379 | None:intergenic |
| ACCAGAAGGTGGTATCCCGA+TGG | 0.638315 | 2.4:+34643709 | None:intergenic |
| CCTATCATTGAATATTGTGG+TGG | 0.640679 | 2.4:-34645050 | MS.gene83231:CDS |
| TTGGCAAAGCCGGAGCCAAG+TGG | 0.645965 | 2.4:+34645624 | None:intergenic |
| TTAATTCCGTGAGACAAAGG+TGG | 0.646678 | 2.4:+34655248 | None:intergenic |
| AATGCCTCTCTGGAATGGAA+AGG | 0.647832 | 2.4:-34644460 | MS.gene83231:intron |
| GGTCGGTTGCTTGAGAAGAG+GGG | 0.647991 | 2.4:-34654353 | MS.gene83231:CDS |
| TTACATTGACGAATGTTGGT+CGG | 0.649277 | 2.4:-34654370 | MS.gene83231:CDS |
| CACCTTTACGAACATCCAAG+TGG | 0.663867 | 2.4:+34645748 | None:intergenic |
| GCCAATGAATTGTACATCTG+TGG | 0.666720 | 2.4:-34648409 | MS.gene83231:CDS |
| CTTACGTGACAATCCTGGTG+AGG | 0.677994 | 2.4:-34653719 | MS.gene83231:CDS |
| AGAGGATACTATCATGCACA+TGG | 0.684640 | 2.4:-34644328 | MS.gene83231:CDS |
| ATACGGGTCGGGTATCCAAG+CGG | 0.702012 | 2.4:+34655093 | None:intergenic |
| TGTGGTGGTACAGAGATTGG+GGG | 0.703383 | 2.4:-34645035 | MS.gene83231:CDS |
| TCTACCTTTCCATTCCAGAG+AGG | 0.716419 | 2.4:+34644456 | None:intergenic |
| GGTTCATCCTCATACCCAAG+TGG | 0.725007 | 2.4:-34653694 | MS.gene83231:CDS |
| AAAGGTGGAGAGTTGCAGCG+TGG | 0.747070 | 2.4:+34655263 | None:intergenic |
| GAACTGATGCATCTGCCACG+TGG | 0.771528 | 2.4:-34655213 | MS.gene83231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 34643391 | 34655350 | 34643391 | ID=MS.gene83231 |
| chr2.4 | mRNA | 34643391 | 34655350 | 34643391 | ID=MS.gene83231.t1;Parent=MS.gene83231 |
| chr2.4 | exon | 34655097 | 34655350 | 34655097 | ID=MS.gene83231.t1.exon1;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34655097 | 34655350 | 34655097 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34654271 | 34654400 | 34654271 | ID=MS.gene83231.t1.exon2;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34654271 | 34654400 | 34654271 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34653535 | 34653803 | 34653535 | ID=MS.gene83231.t1.exon3;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34653535 | 34653803 | 34653535 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34648290 | 34648494 | 34648290 | ID=MS.gene83231.t1.exon4;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34648290 | 34648494 | 34648290 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34646501 | 34646541 | 34646501 | ID=MS.gene83231.t1.exon5;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34646501 | 34646541 | 34646501 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34646266 | 34646391 | 34646266 | ID=MS.gene83231.t1.exon6;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34646266 | 34646391 | 34646266 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34645991 | 34646064 | 34645991 | ID=MS.gene83231.t1.exon7;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34645991 | 34646064 | 34645991 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34645614 | 34645834 | 34645614 | ID=MS.gene83231.t1.exon8;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34645614 | 34645834 | 34645614 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34645248 | 34645342 | 34645248 | ID=MS.gene83231.t1.exon9;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34645248 | 34645342 | 34645248 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34644929 | 34645145 | 34644929 | ID=MS.gene83231.t1.exon10;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34644929 | 34645145 | 34644929 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34644461 | 34644586 | 34644461 | ID=MS.gene83231.t1.exon11;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34644461 | 34644586 | 34644461 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34644291 | 34644389 | 34644291 | ID=MS.gene83231.t1.exon12;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34644291 | 34644389 | 34644291 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34643583 | 34643795 | 34643583 | ID=MS.gene83231.t1.exon13;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34643583 | 34643795 | 34643583 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| chr2.4 | exon | 34643391 | 34643501 | 34643391 | ID=MS.gene83231.t1.exon14;Parent=MS.gene83231.t1 |
| chr2.4 | CDS | 34643391 | 34643501 | 34643391 | ID=cds.MS.gene83231.t1;Parent=MS.gene83231.t1 |
| Gene Sequence |
| Protein sequence |