Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023555.t1 | XP_003629743.2 | 96.8 | 595 | 19 | 0 | 1 | 595 | 135 | 729 | 0.00E+00 | 1158.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023555.t1 | Q84P17 | 72.6 | 598 | 157 | 4 | 1 | 595 | 134 | 727 | 1.3e-254 | 880.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023555.t1 | G7LIP4 | 96.8 | 595 | 19 | 0 | 1 | 595 | 135 | 729 | 0.0e+00 | 1158.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045801 | MS.gene023555 | PPI |
| MS.gene023555 | MS.gene83231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023555.t1 | MTR_8g086050 | 96.807 | 595 | 19 | 0 | 1 | 595 | 135 | 729 | 0.0 | 1186 |
| MS.gene023555.t1 | MTR_8g085680 | 86.387 | 595 | 81 | 0 | 1 | 595 | 134 | 728 | 0.0 | 1079 |
| MS.gene023555.t1 | MTR_8g085680 | 86.275 | 561 | 77 | 0 | 1 | 561 | 134 | 694 | 0.0 | 1016 |
| MS.gene023555.t1 | MTR_8g086050 | 96.728 | 489 | 16 | 0 | 1 | 489 | 135 | 623 | 0.0 | 977 |
| MS.gene023555.t1 | MTR_8g086050 | 96.499 | 457 | 16 | 0 | 1 | 457 | 135 | 591 | 0.0 | 912 |
| MS.gene023555.t1 | MTR_8g085680 | 87.923 | 414 | 50 | 0 | 1 | 414 | 134 | 547 | 0.0 | 757 |
| MS.gene023555.t1 | MTR_2g056120 | 54.013 | 598 | 259 | 6 | 1 | 588 | 129 | 720 | 0.0 | 648 |
| MS.gene023555.t1 | MTR_7g084850 | 27.073 | 591 | 366 | 22 | 35 | 589 | 163 | 724 | 9.55e-34 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023555.t1 | AT1G55320 | 72.575 | 598 | 157 | 4 | 1 | 595 | 134 | 727 | 0.0 | 901 |
| MS.gene023555.t1 | AT1G55320 | 74.364 | 511 | 128 | 3 | 88 | 595 | 1 | 511 | 0.0 | 790 |
| MS.gene023555.t1 | AT5G23050 | 53.051 | 590 | 271 | 4 | 1 | 587 | 128 | 714 | 0.0 | 630 |
| MS.gene023555.t1 | AT5G23050 | 52.174 | 460 | 216 | 3 | 1 | 459 | 128 | 584 | 2.94e-165 | 484 |
| MS.gene023555.t1 | AT5G36880 | 26.182 | 592 | 370 | 22 | 35 | 589 | 158 | 719 | 1.70e-30 | 127 |
| MS.gene023555.t1 | AT5G36880 | 26.182 | 592 | 370 | 22 | 35 | 589 | 108 | 669 | 2.61e-30 | 126 |
| MS.gene023555.t1 | AT5G36880 | 26.182 | 592 | 370 | 22 | 35 | 589 | 108 | 669 | 2.61e-30 | 126 |
| MS.gene023555.t1 | AT5G36880 | 26.182 | 592 | 370 | 22 | 35 | 589 | 108 | 669 | 2.61e-30 | 126 |
| MS.gene023555.t1 | AT5G36880 | 26.182 | 592 | 370 | 22 | 35 | 589 | 108 | 669 | 2.61e-30 | 126 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCAATCCTTTGTTTA+AGG | 0.105370 | 4.3:-14476296 | MS.gene023555:intron |
| TGCATCACCCTTGGAGAAAT+TGG | 0.134060 | 4.3:+14486917 | None:intergenic |
| CATGATGAGGTTTACTTTAA+AGG | 0.142037 | 4.3:-14477260 | MS.gene023555:CDS |
| GGATGCAGGTGTTACCATTT+TGG | 0.185825 | 4.3:-14478260 | MS.gene023555:CDS |
| TCTCCTCAAGGCCATGGTTT+TGG | 0.228125 | 4.3:-14479194 | MS.gene023555:CDS |
| CCCCTGCAGCCTCAAGCTTT+TGG | 0.237441 | 4.3:-14477962 | MS.gene023555:CDS |
| CTATTGCTGGCCGACAAATT+TGG | 0.238876 | 4.3:-14479288 | MS.gene023555:CDS |
| ATACTGTCGTCTGGTTTGTT+AGG | 0.246775 | 4.3:+14487119 | None:intergenic |
| ACAAATATAACAAGCTGTTC+TGG | 0.253499 | 4.3:+14476388 | None:intergenic |
| ATGATGTAGCTGTACAATTA+AGG | 0.254361 | 4.3:-14484811 | MS.gene023555:CDS |
| TTATATCACTGCTTTCTAAA+TGG | 0.268015 | 4.3:-14479242 | MS.gene023555:CDS |
| CAGGGCTGATGAATGCATTT+TGG | 0.275186 | 4.3:-14476449 | MS.gene023555:CDS |
| AGTCGAGTGGCAATTTCTTT+TGG | 0.284136 | 4.3:+14486795 | None:intergenic |
| AAAGGAATGCCCTTGTATAA+AGG | 0.286398 | 4.3:-14477242 | MS.gene023555:CDS |
| TCGGTGTTGCAACTGAAAAT+AGG | 0.286948 | 4.3:-14476414 | MS.gene023555:CDS |
| GCTTGGAACGGTTCCCAAAA+TGG | 0.305618 | 4.3:+14478246 | None:intergenic |
| CTTTATTCCACCAAGATTCA+TGG | 0.317320 | 4.3:+14476751 | None:intergenic |
| CATCAGCAGCACTTCGTATT+GGG | 0.324593 | 4.3:+14479345 | None:intergenic |
| CGGTGTTGCAACTGAAAATA+GGG | 0.329692 | 4.3:-14476413 | MS.gene023555:CDS |
| CCTCCACATAATTCAATGAT+TGG | 0.330215 | 4.3:+14478019 | None:intergenic |
| CAATGCCGTTATTATATATC+TGG | 0.332167 | 4.3:-14486868 | MS.gene023555:CDS |
| CATGAATCTTGGTGGAATAA+AGG | 0.335098 | 4.3:-14476750 | MS.gene023555:intron |
| TGAGTCCAAGGAATAGCTTT+TGG | 0.336308 | 4.3:+14479374 | None:intergenic |
| GGTTTATTCCCCATCTCTCT+TGG | 0.342158 | 4.3:-14477311 | MS.gene023555:CDS |
| CATGGAGGAACATGGCTTCC+TGG | 0.347233 | 4.3:-14487188 | MS.gene023555:CDS |
| AAGGAATGCCCTTGTATAAA+GGG | 0.349792 | 4.3:-14477241 | MS.gene023555:CDS |
| ACAAATTTGGGATGGGTGAT+AGG | 0.352478 | 4.3:-14479275 | MS.gene023555:CDS |
| CTGCTATTGACGTTCAAGTT+GGG | 0.355743 | 4.3:-14479316 | MS.gene023555:CDS |
| TATTGCTGGCCGACAAATTT+GGG | 0.362824 | 4.3:-14479287 | MS.gene023555:CDS |
| TTCCAAGCTTAGTGAAATCT+TGG | 0.364156 | 4.3:-14478231 | MS.gene023555:CDS |
| GTTCAAATGCAGAAACTCTA+AGG | 0.366002 | 4.3:-14476345 | MS.gene023555:CDS |
| TACTCGATGTATGGAGGGCT+TGG | 0.372642 | 4.3:-14478203 | MS.gene023555:CDS |
| GATGTATCTAAAATGCAATT+TGG | 0.379893 | 4.3:+14487227 | None:intergenic |
| TTCCAAGATTTCACTAAGCT+TGG | 0.392624 | 4.3:+14478229 | None:intergenic |
| GGGACTTCCCGTAATGTAAC+TGG | 0.392704 | 4.3:+14477982 | None:intergenic |
| CTCCAAAAGCTTGAGGCTGC+AGG | 0.403739 | 4.3:+14477960 | None:intergenic |
| CAAATGTTGATGATGATCTA+TGG | 0.419523 | 4.3:-14478066 | MS.gene023555:CDS |
| CAAATATAACAAGCTGTTCT+GGG | 0.423540 | 4.3:+14476389 | None:intergenic |
| AATCCAATCATTGAATTATG+TGG | 0.424565 | 4.3:-14478022 | MS.gene023555:CDS |
| ACGACAGTATAGCCATTGTT+TGG | 0.425408 | 4.3:-14487106 | MS.gene023555:CDS |
| CTTGTATACTGCAGGTGTAC+TGG | 0.428408 | 4.3:-14487292 | None:intergenic |
| AAGTTGGGGATGTCTATTGC+TGG | 0.435452 | 4.3:-14479301 | MS.gene023555:CDS |
| CCATCAGCAGCACTTCGTAT+TGG | 0.435928 | 4.3:+14479344 | None:intergenic |
| GATCCCTCATTACCCTCCTC+AGG | 0.443183 | 4.3:+14476078 | None:intergenic |
| TGTTATATTTGTAGTTCTAA+AGG | 0.443786 | 4.3:-14476377 | MS.gene023555:CDS |
| GCTTGCGTCCAGTTACATTA+CGG | 0.444712 | 4.3:-14477990 | MS.gene023555:CDS |
| GGTTTGTTAGGGTGGGAGCT+AGG | 0.447595 | 4.3:+14487131 | None:intergenic |
| GCCATTGTTTGGAGGGATGA+AGG | 0.449236 | 4.3:-14487095 | MS.gene023555:CDS |
| TACTGTCGTCTGGTTTGTTA+GGG | 0.449359 | 4.3:+14487120 | None:intergenic |
| CTTGCGTCCAGTTACATTAC+GGG | 0.455274 | 4.3:-14477989 | MS.gene023555:CDS |
| TAAGGGAACAAGACTTATCA+TGG | 0.464090 | 4.3:-14484793 | MS.gene023555:CDS |
| ACTAATATACTATTCTCATC+TGG | 0.465442 | 4.3:-14479527 | MS.gene023555:CDS |
| TTGGAAGAGTACTCGATGTA+TGG | 0.465523 | 4.3:-14478212 | MS.gene023555:CDS |
| GTCGTCTGGTTTGTTAGGGT+GGG | 0.466027 | 4.3:+14487124 | None:intergenic |
| AAATTGAGCGTGTATGTGAC+AGG | 0.466683 | 4.3:-14476468 | MS.gene023555:CDS |
| TCATGTTATTTCCAGGTTGG+TGG | 0.468194 | 4.3:-14486955 | MS.gene023555:intron |
| TGATGTAGCTGTACAATTAA+GGG | 0.475188 | 4.3:-14484810 | MS.gene023555:CDS |
| GATATAATCAAGAGAATGGT+TGG | 0.477992 | 4.3:-14476809 | MS.gene023555:CDS |
| TGTCGTCTGGTTTGTTAGGG+TGG | 0.479618 | 4.3:+14487123 | None:intergenic |
| ATCACCCATCCCAAATTTGT+CGG | 0.481973 | 4.3:+14479278 | None:intergenic |
| AGCACAGCATCAATGACAAC+TGG | 0.485665 | 4.3:-14477932 | MS.gene023555:CDS |
| TGCTATTGACGTTCAAGTTG+GGG | 0.485865 | 4.3:-14479315 | MS.gene023555:CDS |
| AATTGCAATTGCATCACCCT+TGG | 0.492471 | 4.3:+14486908 | None:intergenic |
| GAATCAATCGATTGATAGAC+TGG | 0.492587 | 4.3:+14479554 | None:intergenic |
| GTACTGGTCTCTTGTGCTAA+AGG | 0.493661 | 4.3:-14487276 | MS.gene023555:CDS |
| GCAACTCTTGCTTTGTACCA+TGG | 0.495276 | 4.3:-14479218 | MS.gene023555:CDS |
| GGAAGATGTTCGAGGAAACT+CGG | 0.500060 | 4.3:+14476109 | None:intergenic |
| GTGACCCAAAAGCTATTCCT+TGG | 0.502276 | 4.3:-14479379 | MS.gene023555:CDS |
| CTTCTGGAAGTCAGAGCTCC+AGG | 0.503923 | 4.3:-14484757 | MS.gene023555:intron |
| TACGAAGTGCTGCTGATGGA+TGG | 0.504944 | 4.3:-14479340 | MS.gene023555:CDS |
| GTTCCTTGTGTTGGTGAAGT+GGG | 0.510523 | 4.3:-14477332 | MS.gene023555:CDS |
| GCTGATGACACCATGAATCT+TGG | 0.510564 | 4.3:-14476761 | MS.gene023555:CDS |
| ACTATGATTGTTCAGGATGC+AGG | 0.510990 | 4.3:-14478274 | MS.gene023555:intron |
| AGATACCTTCCCTTTATACA+AGG | 0.512979 | 4.3:+14477232 | None:intergenic |
| TGTGAAAACACCCTTTGCAT+TGG | 0.516919 | 4.3:+14486764 | None:intergenic |
| TCAGATGCTCCAAGAGAGAT+GGG | 0.517385 | 4.3:+14477302 | None:intergenic |
| GAAGATGTTCGAGGAAACTC+GGG | 0.518970 | 4.3:+14476110 | None:intergenic |
| GATGTATGGAGGGCTTGGAT+TGG | 0.521106 | 4.3:-14478198 | MS.gene023555:CDS |
| ATCAGATGCTCCAAGAGAGA+TGG | 0.521624 | 4.3:+14477301 | None:intergenic |
| ATATTTGTAGTTCTAAAGGA+AGG | 0.523282 | 4.3:-14476373 | MS.gene023555:CDS |
| AAATCCTGAGGAGGGTAATG+AGG | 0.524639 | 4.3:-14476082 | MS.gene023555:CDS |
| TGGAGATATAATCAAGAGAA+TGG | 0.526748 | 4.3:-14476813 | MS.gene023555:CDS |
| CTTTAAAGTAAACCTCATCA+TGG | 0.526934 | 4.3:+14477261 | None:intergenic |
| TCCAAAAGCTTGAGGCTGCA+GGG | 0.533247 | 4.3:+14477961 | None:intergenic |
| ATTTCATATCAGGAGGTGGC+AGG | 0.533709 | 4.3:-14485301 | MS.gene023555:CDS |
| CACCCTTTGCATTGGAAACG+CGG | 0.535243 | 4.3:+14486772 | None:intergenic |
| AACATTTGATGTTTCTCCAG+TGG | 0.538029 | 4.3:+14478081 | None:intergenic |
| GCTGCTATTGACGTTCAAGT+TGG | 0.538506 | 4.3:-14479317 | MS.gene023555:CDS |
| GCAGGAAAATCCCATTGTAC+AGG | 0.541427 | 4.3:-14485283 | MS.gene023555:intron |
| ACAGTATAGCCATTGTTTGG+AGG | 0.544343 | 4.3:-14487103 | MS.gene023555:CDS |
| ACAATGGCTATACTGTCGTC+TGG | 0.544381 | 4.3:+14487110 | None:intergenic |
| CAGGATTTCATATCAGGAGG+TGG | 0.545187 | 4.3:-14485305 | MS.gene023555:CDS |
| CAGTATAGCCATTGTTTGGA+GGG | 0.549309 | 4.3:-14487102 | MS.gene023555:CDS |
| TAGCAGGTTCTTAGAAGACA+TGG | 0.550900 | 4.3:-14476833 | MS.gene023555:intron |
| CTATTCTCATCTGGAACCAC+AGG | 0.550967 | 4.3:-14479518 | MS.gene023555:intron |
| AATGGCCAGATATATAATAA+CGG | 0.554063 | 4.3:+14486863 | None:intergenic |
| GCTATATCATTGTGCAAGGG+AGG | 0.554278 | 4.3:-14476784 | MS.gene023555:CDS |
| CCAAAAGCTTGAGGCTGCAG+GGG | 0.557982 | 4.3:+14477962 | None:intergenic |
| CCAGAAAATGTTCCTTGTGT+TGG | 0.560714 | 4.3:-14477341 | MS.gene023555:CDS |
| CTCCGCGTTTCCAATGCAAA+GGG | 0.562738 | 4.3:-14486774 | MS.gene023555:CDS |
| AATCCTGAGGAGGGTAATGA+GGG | 0.564835 | 4.3:-14476081 | MS.gene023555:CDS |
| GCAATATTGAGGACAGAACC+AGG | 0.565046 | 4.3:+14487170 | None:intergenic |
| ACGAAGTGCTGCTGATGGAT+GGG | 0.566192 | 4.3:-14479339 | MS.gene023555:CDS |
| GTATCTAAAATGCAATTTGG+AGG | 0.568095 | 4.3:+14487230 | None:intergenic |
| AACAACAGTCAGCAATATTG+AGG | 0.568992 | 4.3:+14487159 | None:intergenic |
| ATCAGCAGCACTTCGTATTG+GGG | 0.570807 | 4.3:+14479346 | None:intergenic |
| AAAGTAAACCTCATCATGGT+CGG | 0.573356 | 4.3:+14477265 | None:intergenic |
| ACTCCGCGTTTCCAATGCAA+AGG | 0.573666 | 4.3:-14486775 | MS.gene023555:CDS |
| CATGGATCTCCTCAAGGCCA+TGG | 0.575075 | 4.3:-14479200 | MS.gene023555:CDS |
| TGTTCCTTGTGTTGGTGAAG+TGG | 0.576111 | 4.3:-14477333 | MS.gene023555:CDS |
| TCTTCCTACCCTTCAAAACA+TGG | 0.576214 | 4.3:-14487206 | MS.gene023555:CDS |
| GATGACACCATGAATCTTGG+TGG | 0.576878 | 4.3:-14476758 | MS.gene023555:CDS |
| GGTGGCTATATCATTGTGCA+AGG | 0.577405 | 4.3:-14476788 | MS.gene023555:CDS |
| GCTACATCATCACCTATCGC+AGG | 0.579555 | 4.3:+14484824 | None:intergenic |
| CTTCAAAACATGGAGGAACA+TGG | 0.588514 | 4.3:-14487196 | MS.gene023555:CDS |
| GCTGGCCGACAAATTTGGGA+TGG | 0.589078 | 4.3:-14479283 | MS.gene023555:CDS |
| AAGCAGTGATATAACAGAGT+AGG | 0.589883 | 4.3:+14479251 | None:intergenic |
| TGCAATTGACATGCAAATGA+CGG | 0.590007 | 4.3:-14486892 | MS.gene023555:CDS |
| TTCCCAAAACCATGGCCTTG+AGG | 0.591486 | 4.3:+14479191 | None:intergenic |
| CTGAATGCTCCAAAAGCTTG+AGG | 0.592552 | 4.3:+14477953 | None:intergenic |
| GAAGAGTACTCGATGTATGG+AGG | 0.593996 | 4.3:-14478209 | MS.gene023555:CDS |
| TTCCAACAAAATCCTGAGGA+GGG | 0.594371 | 4.3:-14476090 | MS.gene023555:CDS |
| CCAATACGAAGTGCTGCTGA+TGG | 0.596120 | 4.3:-14479344 | MS.gene023555:CDS |
| TTTCAGGATTTCATATCAGG+AGG | 0.598630 | 4.3:-14485308 | MS.gene023555:intron |
| CTGGCCGACAAATTTGGGAT+GGG | 0.599613 | 4.3:-14479282 | MS.gene023555:CDS |
| AACACATCCAGCTAAAACAA+TGG | 0.600477 | 4.3:+14486845 | None:intergenic |
| AATGCCCTTGTATAAAGGGA+AGG | 0.602985 | 4.3:-14477237 | MS.gene023555:intron |
| AGATTTCACTAAGCTTGGAA+CGG | 0.603067 | 4.3:+14478234 | None:intergenic |
| CTATATCATTGTGCAAGGGA+GGG | 0.603945 | 4.3:-14476783 | MS.gene023555:CDS |
| GTTATTGTGCTCCCTGCGAT+AGG | 0.604277 | 4.3:-14484836 | MS.gene023555:CDS |
| TTTGTCATTCTTGACGACAA+TGG | 0.604567 | 4.3:-14477908 | MS.gene023555:CDS |
| ATTGGGGCAAGTTGAGTCCA+AGG | 0.604685 | 4.3:+14479362 | None:intergenic |
| GGACCTTAAACAAAGGATTG+AGG | 0.611864 | 4.3:+14476293 | None:intergenic |
| GAGAGTGATATGATTAACCT+CGG | 0.612081 | 4.3:+14487061 | None:intergenic |
| TTGTACCATGGATCTCCTCA+AGG | 0.614255 | 4.3:-14479206 | MS.gene023555:CDS |
| ACCTTCATCCCTCCAAACAA+TGG | 0.614707 | 4.3:+14487094 | None:intergenic |
| CTTCCAACAAAATCCTGAGG+AGG | 0.619824 | 4.3:-14476091 | MS.gene023555:CDS |
| TCTTTGCAGTCGAGTCATTG+AGG | 0.621680 | 4.3:-14484873 | MS.gene023555:intron |
| CCAATCATTGAATTATGTGG+AGG | 0.624312 | 4.3:-14478019 | MS.gene023555:CDS |
| ATAGATGCCAATTTCTCCAA+GGG | 0.625023 | 4.3:-14486924 | MS.gene023555:CDS |
| AATAGATGCCAATTTCTCCA+AGG | 0.627081 | 4.3:-14486925 | MS.gene023555:CDS |
| CATGGCCTTGAGGAGATCCA+TGG | 0.627745 | 4.3:+14479201 | None:intergenic |
| AAGGGTCGGACCTTAAACAA+AGG | 0.631189 | 4.3:+14476286 | None:intergenic |
| GAACAAATTTCCCAAAACCA+TGG | 0.631785 | 4.3:+14479183 | None:intergenic |
| GGTGTTGCAACTGAAAATAG+GGG | 0.634076 | 4.3:-14476412 | MS.gene023555:CDS |
| GCAATTTGGAGGTTGAACAA+AGG | 0.636247 | 4.3:+14487241 | None:intergenic |
| AAGAGTACTCGATGTATGGA+GGG | 0.637862 | 4.3:-14478208 | MS.gene023555:CDS |
| GATACCTTCCCTTTATACAA+GGG | 0.639248 | 4.3:+14477233 | None:intergenic |
| ATTGGAAACGCGGAGTCGAG+TGG | 0.640312 | 4.3:+14486782 | None:intergenic |
| CTACATCATCACCTATCGCA+GGG | 0.643107 | 4.3:+14484825 | None:intergenic |
| GCTGAATGCCGACCATGATG+AGG | 0.659320 | 4.3:-14477273 | MS.gene023555:CDS |
| ATAATCAAGAGAATGGTTGG+TGG | 0.659430 | 4.3:-14476806 | MS.gene023555:CDS |
| GTGGCTATATCATTGTGCAA+GGG | 0.681013 | 4.3:-14476787 | MS.gene023555:CDS |
| AAACCCACTTCACCAACACA+AGG | 0.689168 | 4.3:+14477329 | None:intergenic |
| CATCTTCCAACAAAATCCTG+AGG | 0.697941 | 4.3:-14476094 | MS.gene023555:CDS |
| TCCTACCCTTCAAAACATGG+AGG | 0.723423 | 4.3:-14487203 | MS.gene023555:CDS |
| CAGATGCTCCAAGAGAGATG+GGG | 0.737772 | 4.3:+14477303 | None:intergenic |
| AATTGAGCGTGTATGTGACA+GGG | 0.741241 | 4.3:-14476467 | MS.gene023555:CDS |
| TGAAGGTTCTGATAACTCCG+AGG | 0.744320 | 4.3:-14487078 | MS.gene023555:CDS |
| AAGATGTTCGAGGAAACTCG+GGG | 0.765970 | 4.3:+14476111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 14476040 | 14487300 | 14476040 | ID=MS.gene023555 |
| chr4.3 | mRNA | 14476040 | 14487300 | 14476040 | ID=MS.gene023555.t1;Parent=MS.gene023555 |
| chr4.3 | exon | 14487038 | 14487300 | 14487038 | ID=MS.gene023555.t1.exon1;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14487038 | 14487300 | 14487038 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14486761 | 14486962 | 14486761 | ID=MS.gene023555.t1.exon2;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14486761 | 14486962 | 14486761 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14485284 | 14485324 | 14485284 | ID=MS.gene023555.t1.exon3;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14485284 | 14485324 | 14485284 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14484758 | 14484886 | 14484758 | ID=MS.gene023555.t1.exon4;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14484758 | 14484886 | 14484758 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14479519 | 14479592 | 14479519 | ID=MS.gene023555.t1.exon5;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14479519 | 14479592 | 14479519 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14479181 | 14479401 | 14479181 | ID=MS.gene023555.t1.exon6;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14479181 | 14479401 | 14479181 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14478187 | 14478281 | 14478187 | ID=MS.gene023555.t1.exon7;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14478187 | 14478281 | 14478187 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14477898 | 14478114 | 14477898 | ID=MS.gene023555.t1.exon8;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14477898 | 14478114 | 14477898 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14477238 | 14477363 | 14477238 | ID=MS.gene023555.t1.exon9;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14477238 | 14477363 | 14477238 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14476751 | 14476849 | 14476751 | ID=MS.gene023555.t1.exon10;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14476751 | 14476849 | 14476751 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14476297 | 14476503 | 14476297 | ID=MS.gene023555.t1.exon11;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14476297 | 14476503 | 14476297 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| chr4.3 | exon | 14476040 | 14476153 | 14476040 | ID=MS.gene023555.t1.exon12;Parent=MS.gene023555.t1 |
| chr4.3 | CDS | 14476040 | 14476153 | 14476040 | ID=cds.MS.gene023555.t1;Parent=MS.gene023555.t1 |
| Gene Sequence |
| Protein sequence |
