Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023809.t1 | XP_024627166.1 | 98.3 | 360 | 4 | 1 | 1 | 358 | 1 | 360 | 7.00E-194 | 686.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023809.t1 | Q29Q28 | 78.9 | 356 | 63 | 1 | 3 | 358 | 2 | 345 | 5.5e-155 | 548.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023809.t1 | A2Q3P6 | 98.3 | 360 | 4 | 1 | 1 | 358 | 1 | 360 | 5.1e-194 | 686.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52182 | MS.gene023809 | PPI |
| MS.gene023809 | MS.gene27660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023809.t1 | MTR_7g076310 | 98.333 | 360 | 4 | 1 | 1 | 358 | 1 | 360 | 0.0 | 723 |
| MS.gene023809.t1 | MTR_7g076310 | 91.667 | 360 | 4 | 2 | 1 | 358 | 1 | 336 | 0.0 | 659 |
| MS.gene023809.t1 | MTR_7g076310 | 97.890 | 237 | 3 | 1 | 124 | 358 | 1 | 237 | 1.02e-166 | 464 |
| MS.gene023809.t1 | MTR_5g038900 | 24.756 | 307 | 200 | 9 | 27 | 310 | 17 | 315 | 1.75e-17 | 82.8 |
| MS.gene023809.t1 | MTR_2g096300 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 3.17e-14 | 73.2 |
| MS.gene023809.t1 | MTR_4g063040 | 26.160 | 237 | 163 | 6 | 103 | 331 | 115 | 347 | 3.70e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023809.t1 | AT4G23010 | 79.213 | 356 | 62 | 2 | 3 | 358 | 2 | 345 | 0.0 | 559 |
| MS.gene023809.t1 | AT1G12600 | 78.711 | 357 | 65 | 3 | 2 | 358 | 4 | 349 | 0.0 | 556 |
| MS.gene023809.t1 | AT4G23010 | 75.603 | 373 | 62 | 3 | 3 | 358 | 2 | 362 | 0.0 | 549 |
| MS.gene023809.t1 | AT4G23010 | 69.975 | 403 | 62 | 3 | 3 | 358 | 2 | 392 | 0.0 | 537 |
| MS.gene023809.t1 | AT1G14360 | 24.620 | 329 | 211 | 10 | 27 | 332 | 17 | 331 | 6.42e-17 | 81.3 |
| MS.gene023809.t1 | AT2G02810 | 26.568 | 271 | 174 | 8 | 26 | 276 | 16 | 281 | 3.55e-16 | 79.0 |
| MS.gene023809.t1 | AT3G46180 | 24.756 | 307 | 189 | 10 | 66 | 347 | 57 | 346 | 2.99e-14 | 73.6 |
| MS.gene023809.t1 | AT5G59740 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 6.20e-13 | 69.3 |
Find 82 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7.1:+26887435 | None:intergenic |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7.1:-26889703 | MS.gene023809:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7.1:-26887925 | MS.gene023809:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7.1:+26887338 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7.1:-26890365 | MS.gene023809:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7.1:+26889689 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7.1:-26890377 | MS.gene023809:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7.1:-26889608 | MS.gene023809:CDS |
| TTGATCACCTGTGTGGTATC+AGG | 0.277949 | 7.1:+26888686 | None:intergenic |
| TTCAGGAATATGTGTATAAC+AGG | 0.287196 | 7.1:-26889882 | MS.gene023809:intron |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7.1:-26888753 | MS.gene023809:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7.1:+26887875 | None:intergenic |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7.1:+26888782 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7.1:+26888889 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7.1:-26888899 | MS.gene023809:CDS |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7.1:-26890431 | MS.gene023809:CDS |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7.1:+26887348 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7.1:-26890447 | None:intergenic |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7.1:+26890388 | None:intergenic |
| TTCTTTGGATATCTTGTCAA+TGG | 0.390936 | 7.1:-26890350 | MS.gene023809:CDS |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7.1:+26888813 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7.1:-26888785 | MS.gene023809:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7.1:-26888842 | MS.gene023809:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7.1:-26888767 | MS.gene023809:CDS |
| TTTCTTGTCTCAGCTATGGT+TGG | 0.441806 | 7.1:-26889756 | MS.gene023809:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7.1:+26889704 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7.1:+26890389 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7.1:-26887961 | MS.gene023809:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7.1:-26887301 | MS.gene023809:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7.1:-26888915 | MS.gene023809:CDS |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7.1:-26887247 | None:intergenic |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7.1:+26889571 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7.1:+26888860 | None:intergenic |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7.1:+26887357 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7.1:-26888759 | MS.gene023809:CDS |
| TGGTACTTCACATTTATTCA+AGG | 0.474364 | 7.1:-26889736 | MS.gene023809:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7.1:-26888140 | MS.gene023809:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7.1:-26889683 | MS.gene023809:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7.1:-26887496 | MS.gene023809:intron |
| AGCATAGGTGGGATTAAGAA+AGG | 0.503212 | 7.1:+26888113 | None:intergenic |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7.1:-26888085 | MS.gene023809:CDS |
| GAAGCTTTCTGCTGTACTCA+TGG | 0.507955 | 7.1:-26889638 | MS.gene023809:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7.1:+26887353 | None:intergenic |
| TGGACTAATACTCATAGCTA+TGG | 0.524183 | 7.1:-26887412 | MS.gene023809:CDS |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7.1:-26887300 | MS.gene023809:CDS |
| TGATCACCTGTGTGGTATCA+GGG | 0.529466 | 7.1:+26888687 | None:intergenic |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7.1:-26888849 | MS.gene023809:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7.1:-26887938 | MS.gene023809:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7.1:-26888914 | MS.gene023809:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7.1:+26887902 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7.1:-26887869 | MS.gene023809:intron |
| AAGCTTTCTGCTGTACTCAT+GGG | 0.546977 | 7.1:-26889637 | MS.gene023809:CDS |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7.1:-26889616 | MS.gene023809:CDS |
| CTGTAGGTGAAGATGATGAA+AGG | 0.551719 | 7.1:-26887263 | MS.gene023809:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7.1:-26888069 | MS.gene023809:intron |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7.1:+26888908 | None:intergenic |
| TAAATTTACCATGGCTGTAG+TGG | 0.562393 | 7.1:+26887861 | None:intergenic |
| GAAGAGTTGGGAACACTCCA+TGG | 0.566100 | 7.1:-26887288 | MS.gene023809:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7.1:-26889672 | MS.gene023809:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7.1:-26888141 | MS.gene023809:CDS |
| AGATGATGAAAGGAGGCCCT+TGG | 0.576948 | 7.1:-26887253 | MS.gene023809:CDS |
| GCTGTACTCATGGGATCACA+TGG | 0.577442 | 7.1:-26889628 | MS.gene023809:CDS |
| GGACTAATACTCATAGCTAT+GGG | 0.581423 | 7.1:-26887411 | MS.gene023809:CDS |
| GGAACACTCCATGGTTCTGT+AGG | 0.587445 | 7.1:-26887279 | MS.gene023809:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7.1:+26888748 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7.1:-26889617 | MS.gene023809:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7.1:+26887237 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7.1:+26887952 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7.1:-26887432 | MS.gene023809:CDS |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7.1:+26887236 | None:intergenic |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7.1:-26887437 | MS.gene023809:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7.1:+26889572 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7.1:-26890403 | MS.gene023809:CDS |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7.1:-26887438 | MS.gene023809:CDS |
| CATCTTCACCTACAGAACCA+TGG | 0.667537 | 7.1:+26887271 | None:intergenic |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7.1:-26889563 | MS.gene023809:intron |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7.1:+26887951 | None:intergenic |
| TAGGTGAAGATGATGAAAGG+AGG | 0.691422 | 7.1:-26887260 | MS.gene023809:CDS |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7.1:-26890446 | MS.gene023809:CDS |
| TATGAACCCTGATACCACAC+AGG | 0.720480 | 7.1:-26888693 | MS.gene023809:intron |
| TCTTGTCAATGGTATCTGTG+AGG | 0.723438 | 7.1:-26890339 | MS.gene023809:intron |
| TAGAAAATTGATCACCTGTG+TGG | 0.789950 | 7.1:+26888679 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGGATTTATTATAT+TGG | + | chr7.1:26888748-26888767 | None:intergenic | 10.0% |
| !! | AATTTAAAAAATCACAAATT+TGG | + | chr7.1:26889090-26889109 | None:intergenic | 10.0% |
| !! | AAATTAATCATATACTTGTT+GGG | + | chr7.1:26889064-26889083 | None:intergenic | 15.0% |
| !! | GCTCAAATAATTTAATAAAT+AGG | + | chr7.1:26889183-26889202 | None:intergenic | 15.0% |
| !! | TAAATTAATCATATACTTGT+TGG | + | chr7.1:26889065-26889084 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | + | chr7.1:26889988-26890007 | None:intergenic | 15.0% |
| !!! | AAAAATGAAATTTGTGATTT+TGG | - | chr7.1:26887908-26887927 | MS.gene023809:CDS | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | - | chr7.1:26888755-26888774 | MS.gene023809:CDS | 15.0% |
| !!! | AAGTATAAGAATTTTTAATG+TGG | + | chr7.1:26889503-26889522 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | + | chr7.1:26889668-26889687 | None:intergenic | 15.0% |
| !! | AGAACCTATAACATAAAATT+TGG | + | chr7.1:26888762-26888781 | None:intergenic | 20.0% |
| !! | AGTATTAAATACTTGATACT+TGG | - | chr7.1:26890000-26890019 | MS.gene023809:intron | 20.0% |
| !! | GAAGTTATAAATCTGATATT+TGG | - | chr7.1:26887757-26887776 | MS.gene023809:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | - | chr7.1:26888453-26888472 | MS.gene023809:intron | 20.0% |
| !!! | GATACTTGGTTTTTTTTTTT+TGG | - | chr7.1:26890014-26890033 | MS.gene023809:intron | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | - | chr7.1:26889523-26889542 | MS.gene023809:intron | 20.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | + | chr7.1:26888207-26888226 | None:intergenic | 25.0% |
| ! | AAACAGTATCCTTCAAAAAT+GGG | + | chr7.1:26888206-26888225 | None:intergenic | 25.0% |
| ! | AAATCTGAATTACTGAAAGT+TGG | - | chr7.1:26889116-26889135 | MS.gene023809:intron | 25.0% |
| ! | AGCATATAAGAAAAACAGTT+GGG | - | chr7.1:26889336-26889355 | MS.gene023809:intron | 25.0% |
| ! | ATTAATCTGAGTTCAAATTC+TGG | + | chr7.1:26887735-26887754 | None:intergenic | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | + | chr7.1:26888122-26888141 | None:intergenic | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | - | chr7.1:26888128-26888147 | MS.gene023809:CDS | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | + | chr7.1:26889909-26889928 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | + | chr7.1:26888601-26888620 | None:intergenic | 25.0% |
| ! | TAGCATATAAGAAAAACAGT+TGG | - | chr7.1:26889335-26889354 | MS.gene023809:intron | 25.0% |
| ! | TATTTATGGATTTAATCCTC+TGG | - | chr7.1:26887638-26887657 | MS.gene023809:intron | 25.0% |
| ! | TTCAAAAATGGGTAAAGTAA+AGG | + | chr7.1:26888195-26888214 | None:intergenic | 25.0% |
| ! | TTGTGATGATAAATTTACCA+TGG | + | chr7.1:26889842-26889861 | None:intergenic | 25.0% |
| !! | AGATTTCATGTTTTTCTTCT+TGG | - | chr7.1:26889436-26889455 | MS.gene023809:intron | 25.0% |
| !! | ATAAGAATTTTTAATGTGGC+AGG | + | chr7.1:26889499-26889518 | None:intergenic | 25.0% |
| !! | GAAAAACATGAAATCTGTTT+TGG | + | chr7.1:26889432-26889451 | None:intergenic | 25.0% |
| !! | GTGAGGTATATATATCTTTT+TGG | - | chr7.1:26887369-26887388 | MS.gene023809:CDS | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | - | chr7.1:26889753-26889772 | MS.gene023809:intron | 25.0% |
| !! | TGTGGATTACAAAAAAATAG+CGG | + | chr7.1:26888513-26888532 | None:intergenic | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | - | chr7.1:26888276-26888295 | MS.gene023809:intron | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | - | chr7.1:26888206-26888225 | MS.gene023809:intron | 25.0% |
| !!! | TACTGATTTTTAGCATTCAA+TGG | - | chr7.1:26887880-26887899 | MS.gene023809:CDS | 25.0% |
| !!! | TTTACTTTACCCATTTTTGA+AGG | - | chr7.1:26888194-26888213 | MS.gene023809:intron | 25.0% |
| AAAATGGGTAAAGTAAAGGT+AGG | + | chr7.1:26888191-26888210 | None:intergenic | 30.0% | |
| AAACCATTAACAGAACAACA+TGG | - | chr7.1:26890253-26890272 | MS.gene023809:intron | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | - | chr7.1:26888539-26888558 | MS.gene023809:intron | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | - | chr7.1:26890254-26890273 | MS.gene023809:intron | 30.0% | |
| ATCACCAACTAAATTACCAT+TGG | + | chr7.1:26890077-26890096 | None:intergenic | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | - | chr7.1:26888302-26888321 | MS.gene023809:intron | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | + | chr7.1:26889871-26889890 | None:intergenic | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | + | chr7.1:26887990-26888009 | None:intergenic | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | + | chr7.1:26888654-26888673 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | - | chr7.1:26889869-26889888 | MS.gene023809:intron | 30.0% | |
| GATTTAAACATAATCTGTGC+AGG | + | chr7.1:26888123-26888142 | None:intergenic | 30.0% | |
| GCAGATATATACTCATGTAT+TGG | + | chr7.1:26888834-26888853 | None:intergenic | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | - | chr7.1:26888842-26888861 | MS.gene023809:CDS | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | + | chr7.1:26889976-26889995 | None:intergenic | 30.0% | |
| TCACCAACTAAATTACCATT+GGG | + | chr7.1:26890076-26890095 | None:intergenic | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | + | chr7.1:26888540-26888559 | None:intergenic | 30.0% | |
| TGGTACTTCACATTTATTCA+AGG | - | chr7.1:26887955-26887974 | MS.gene023809:CDS | 30.0% | |
| TTCAGGAATATGTGTATAAC+AGG | - | chr7.1:26887809-26887828 | MS.gene023809:intron | 30.0% | |
| TTCATGTTCACAGGTAAATT+TGG | - | chr7.1:26889631-26889650 | MS.gene023809:CDS | 30.0% | |
| TTCTTTGGATATCTTGTCAA+TGG | - | chr7.1:26887341-26887360 | MS.gene023809:CDS | 30.0% | |
| TTTCCCAATGGTAATTTAGT+TGG | - | chr7.1:26890070-26890089 | MS.gene023809:intron | 30.0% | |
| TTTGAGAGAGCTTATAGAAA+CGG | - | chr7.1:26889241-26889260 | MS.gene023809:intron | 30.0% | |
| TTTGGTGAATACTTGATACT+TGG | - | chr7.1:26890032-26890051 | MS.gene023809:intron | 30.0% | |
| ! | AATTCTCCTGTAAAAAGCAT+AGG | + | chr7.1:26889596-26889615 | None:intergenic | 30.0% |
| ! | GAATTGAAAGTTTTTCCCAA+TGG | - | chr7.1:26890058-26890077 | MS.gene023809:intron | 30.0% |
| ! | TCTCATTTGTCTGATTTTTC+AGG | - | chr7.1:26887792-26887811 | MS.gene023809:intron | 30.0% |
| ! | TGTATAACAGGCTTCATTTT+AGG | - | chr7.1:26887821-26887840 | MS.gene023809:intron | 30.0% |
| ! | TTGGTTATGGATTCTTTTCT+TGG | - | chr7.1:26888951-26888970 | MS.gene023809:intron | 30.0% |
| !! | ATGTTTTAGACACTATGTCA+TGG | - | chr7.1:26888665-26888684 | MS.gene023809:intron | 30.0% |
| !! | CTGTTTCTGATTTACCTTAA+TGG | - | chr7.1:26887988-26888007 | MS.gene023809:intron | 30.0% |
| !!! | CTTTTTTTCAGTTACCTTTG+TGG | + | chr7.1:26888145-26888164 | None:intergenic | 30.0% |
| !!! | TTTTTTTCTTGTCTCAGCTA+TGG | - | chr7.1:26887931-26887950 | MS.gene023809:CDS | 30.0% |
| AATGAGAAATTGTTGCCATC+TGG | + | chr7.1:26887306-26887325 | None:intergenic | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | + | chr7.1:26888912-26888931 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | - | chr7.1:26890195-26890214 | MS.gene023809:intron | 35.0% | |
| ACTAATACACCATACACGTA+GGG | + | chr7.1:26889742-26889761 | None:intergenic | 35.0% | |
| ACTATATCAGAGGACAATAG+TGG | - | chr7.1:26888549-26888568 | MS.gene023809:intron | 35.0% | |
| ATGAGAAATTGTTGCCATCT+GGG | + | chr7.1:26887305-26887324 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | - | chr7.1:26887314-26887333 | MS.gene023809:CDS | 35.0% | |
| CAGGAGAATTATTCAAAGCA+TGG | - | chr7.1:26889606-26889625 | MS.gene023809:CDS | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | - | chr7.1:26889766-26889785 | MS.gene023809:intron | 35.0% | |
| GGACTAATACTCATAGCTAT+GGG | - | chr7.1:26890280-26890299 | MS.gene023809:intron | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | + | chr7.1:26888580-26888599 | None:intergenic | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | + | chr7.1:26889833-26889852 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | + | chr7.1:26889896-26889915 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | + | chr7.1:26889743-26889762 | None:intergenic | 35.0% | |
| TAGAAAATTGATCACCTGTG+TGG | + | chr7.1:26889015-26889034 | None:intergenic | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | - | chr7.1:26888906-26888925 | MS.gene023809:CDS | 35.0% | |
| TCTCTAATCACGGAAAATAG+TGG | - | chr7.1:26888312-26888331 | MS.gene023809:intron | 35.0% | |
| TGGACTAATACTCATAGCTA+TGG | - | chr7.1:26890279-26890298 | MS.gene023809:intron | 35.0% | |
| TTCGGTTAGGAGATAAAAGT+CGG | - | chr7.1:26887692-26887711 | MS.gene023809:intron | 35.0% | |
| TTGTGTCTTTGTGTGTAGAA+GGG | - | chr7.1:26887505-26887524 | MS.gene023809:intron | 35.0% | |
| TTTGTGTCTTTGTGTGTAGA+AGG | - | chr7.1:26887504-26887523 | MS.gene023809:intron | 35.0% | |
| ! | ACTACTGTTGATGAAGAGTT+GGG | - | chr7.1:26890391-26890410 | MS.gene023809:CDS | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | + | chr7.1:26888039-26888058 | None:intergenic | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | - | chr7.1:26888236-26888255 | MS.gene023809:intron | 35.0% |
| ! | ATTCTGGCTAGAACAATCAT+TGG | + | chr7.1:26887719-26887738 | None:intergenic | 35.0% |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | + | chr7.1:26890341-26890360 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | + | chr7.1:26890346-26890365 | None:intergenic | 35.0% |
| ! | GACACAGTGTTGTTAAATAG+CGG | - | chr7.1:26888378-26888397 | MS.gene023809:intron | 35.0% |
| ! | GCTTCACATAAGTTTTCCAT+GGG | + | chr7.1:26888038-26888057 | None:intergenic | 35.0% |
| ! | GTTGCTAATTCAACCTTTTC+TGG | - | chr7.1:26889466-26889485 | MS.gene023809:intron | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | - | chr7.1:26890390-26890409 | MS.gene023809:CDS | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | - | chr7.1:26888230-26888249 | MS.gene023809:intron | 35.0% |
| !! | GAAAAATGGCTCTGATAATC+TGG | - | chr7.1:26887667-26887686 | MS.gene023809:intron | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | + | chr7.1:26890356-26890375 | None:intergenic | 35.0% |
| !! | GTTGGTGTTGTTATGATAAC+CGG | - | chr7.1:26888924-26888943 | MS.gene023809:intron | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | - | chr7.1:26888211-26888230 | MS.gene023809:intron | 35.0% |
| !!! | AAGTTGGTCACTAGTTTTGA+CGG | - | chr7.1:26889132-26889151 | MS.gene023809:intron | 35.0% |
| !!! | GGATTTAATCCTCTGGTTTT+CGG | - | chr7.1:26887645-26887664 | MS.gene023809:intron | 35.0% |
| AAGCTTTCTGCTGTACTCAT+GGG | - | chr7.1:26888054-26888073 | MS.gene023809:intron | 40.0% | |
| AGAATCCATAACCAAAGCAC+CGG | + | chr7.1:26888946-26888965 | None:intergenic | 40.0% | |
| AGCACCAAAAAGGGCAATTA+GGG | + | chr7.1:26889809-26889828 | None:intergenic | 40.0% | |
| AGCATAGGTGGGATTAAGAA+AGG | + | chr7.1:26889581-26889600 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | + | chr7.1:26890259-26890278 | None:intergenic | 40.0% | |
| CTGTAGGTGAAGATGATGAA+AGG | - | chr7.1:26890428-26890447 | MS.gene023809:CDS | 40.0% | |
| GCTTGCTTGTGAAACCATTA+AGG | + | chr7.1:26888005-26888024 | None:intergenic | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | - | chr7.1:26888075-26888094 | MS.gene023809:CDS | 40.0% | |
| GTTCTGCCAGTGATGATAAT+GGG | - | chr7.1:26888777-26888796 | MS.gene023809:CDS | 40.0% | |
| TAGGTGAAGATGATGAAAGG+AGG | - | chr7.1:26890431-26890450 | MS.gene023809:CDS | 40.0% | |
| TCGGTTAGGAGATAAAAGTC+GGG | - | chr7.1:26887693-26887712 | MS.gene023809:intron | 40.0% | |
| TCTTCTCAGACCAGGAATAA+AGG | + | chr7.1:26888805-26888824 | None:intergenic | 40.0% | |
| TCTTGTCAATGGTATCTGTG+AGG | - | chr7.1:26887352-26887371 | MS.gene023809:CDS | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | - | chr7.1:26888083-26888102 | MS.gene023809:CDS | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | - | chr7.1:26888008-26888027 | MS.gene023809:intron | 40.0% | |
| TGTGTCTTTGTGTGTAGAAG+GGG | - | chr7.1:26887506-26887525 | MS.gene023809:intron | 40.0% | |
| TGTTATGATAACCGGTGCTT+TGG | - | chr7.1:26888932-26888951 | MS.gene023809:intron | 40.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | - | chr7.1:26887326-26887345 | MS.gene023809:CDS | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | - | chr7.1:26890259-26890278 | MS.gene023809:intron | 40.0% | |
| TTTCTTGTCTCAGCTATGGT+TGG | - | chr7.1:26887935-26887954 | MS.gene023809:CDS | 40.0% | |
| ! | CTCCTGTAAAAAGCATAGGT+GGG | + | chr7.1:26889592-26889611 | None:intergenic | 40.0% |
| ! | GGATATTTTCTTCTCAGACC+AGG | + | chr7.1:26888813-26888832 | None:intergenic | 40.0% |
| ! | TCTCCTGTAAAAAGCATAGG+TGG | + | chr7.1:26889593-26889612 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | - | chr7.1:26888849-26888868 | MS.gene023809:CDS | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | - | chr7.1:26887679-26887698 | MS.gene023809:intron | 40.0% |
| !! | ATAATGGGTGCCTTTATTCC+TGG | - | chr7.1:26888792-26888811 | MS.gene023809:CDS | 40.0% |
| !! | ATCCCACCTATGCTTTTTAC+AGG | - | chr7.1:26889587-26889606 | MS.gene023809:CDS | 40.0% |
| !! | GTACAAAGTGTTGGCAATTG+TGG | + | chr7.1:26888531-26888550 | None:intergenic | 40.0% |
| !!! | TCCTCTGGTTTTCGGAAAAA+TGG | - | chr7.1:26887653-26887672 | MS.gene023809:intron | 40.0% |
| AGCATGGACTTCATGTTCAC+AGG | - | chr7.1:26889622-26889641 | MS.gene023809:CDS | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | + | chr7.1:26889804-26889823 | None:intergenic | 45.0% | |
| CAGCACCAAAAAGGGCAATT+AGG | + | chr7.1:26889810-26889829 | None:intergenic | 45.0% | |
| CATCTTCACCTACAGAACCA+TGG | + | chr7.1:26890423-26890442 | None:intergenic | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | - | chr7.1:26888694-26888713 | MS.gene023809:CDS | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | - | chr7.1:26889551-26889570 | MS.gene023809:intron | 45.0% | |
| GAAGCTTTCTGCTGTACTCA+TGG | - | chr7.1:26888053-26888072 | MS.gene023809:intron | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | - | chr7.1:26888938-26888957 | MS.gene023809:intron | 45.0% | |
| GCTATGACACTGTTGCATAG+CGG | - | chr7.1:26888475-26888494 | MS.gene023809:intron | 45.0% | |
| GGCAGGTATACTACCAGAAA+AGG | + | chr7.1:26889482-26889501 | None:intergenic | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | - | chr7.1:26888074-26888093 | MS.gene023809:CDS | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | - | chr7.1:26888776-26888795 | MS.gene023809:CDS | 45.0% | |
| GTGCGTCTGCTAGTGTAAAT+AGG | + | chr7.1:26888881-26888900 | None:intergenic | 45.0% | |
| TATGAACCCTGATACCACAC+AGG | - | chr7.1:26888998-26889017 | MS.gene023809:intron | 45.0% | |
| TGATCACCTGTGTGGTATCA+GGG | + | chr7.1:26889007-26889026 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | + | chr7.1:26889818-26889837 | None:intergenic | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | + | chr7.1:26889792-26889811 | None:intergenic | 45.0% | |
| TTGATCACCTGTGTGGTATC+AGG | + | chr7.1:26889008-26889027 | None:intergenic | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | + | chr7.1:26888786-26888805 | None:intergenic | 45.0% |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | - | chr7.1:26889802-26889821 | MS.gene023809:intron | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | - | chr7.1:26887674-26887693 | MS.gene023809:intron | 45.0% |
| ! | GGGAAAGCACGAAGATGATT+AGG | + | chr7.1:26889044-26889063 | None:intergenic | 45.0% |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | - | chr7.1:26887260-26887279 | MS.gene023809:CDS | 45.0% |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | + | chr7.1:26890325-26890344 | None:intergenic | 45.0% |
| !!! | GCCATTTTTCCGAAAACCAG+AGG | + | chr7.1:26887657-26887676 | None:intergenic | 45.0% |
| !!! | TATATGAAATTTTTTATTTA+TGG | - | chr7.1:26887624-26887643 | MS.gene023809:intron | 5.0% |
| AAGGCTCTCTTAGGTATGGC+AGG | + | chr7.1:26890337-26890356 | None:intergenic | 50.0% | |
| AGATGATGAAAGGAGGCCCT+TGG | - | chr7.1:26890438-26890457 | MS.gene023809:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | + | chr7.1:26889731-26889750 | None:intergenic | 50.0% | |
| CACTCTCTGATAGACCCAGA+TGG | - | chr7.1:26887288-26887307 | MS.gene023809:CDS | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | + | chr7.1:26889819-26889838 | None:intergenic | 50.0% | |
| GAAGAGTTGGGAACACTCCA+TGG | - | chr7.1:26890403-26890422 | MS.gene023809:CDS | 50.0% | |
| GCAAGCAAATGGTGAACCCA+TGG | - | chr7.1:26888019-26888038 | MS.gene023809:intron | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | + | chr7.1:26888353-26888372 | None:intergenic | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | - | chr7.1:26889550-26889569 | MS.gene023809:intron | 50.0% | |
| GCTGTACTCATGGGATCACA+TGG | - | chr7.1:26888063-26888082 | MS.gene023809:intron | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | - | chr7.1:26889730-26889749 | MS.gene023809:CDS | 50.0% | |
| ! | GGAACACTCCATGGTTCTGT+AGG | - | chr7.1:26890412-26890431 | MS.gene023809:CDS | 50.0% |
| GCTAATGCGTTGTAGTGCGG+TGG | + | chr7.1:26888350-26888369 | None:intergenic | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | - | chr7.1:26889822-26889841 | MS.gene023809:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 26887248 | 26890465 | 26887248 | ID=MS.gene023809 |
| chr7.1 | mRNA | 26887248 | 26890465 | 26887248 | ID=MS.gene023809.t1;Parent=MS.gene023809 |
| chr7.1 | exon | 26890340 | 26890465 | 26890340 | ID=MS.gene023809.t1.exon1;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26890340 | 26890465 | 26890340 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26889871 | 26889899 | 26889871 | ID=MS.gene023809.t1.exon2;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26889871 | 26889899 | 26889871 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26889564 | 26889765 | 26889564 | ID=MS.gene023809.t1.exon3;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26889564 | 26889765 | 26889564 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26888694 | 26888936 | 26888694 | ID=MS.gene023809.t1.exon4;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26888694 | 26888936 | 26888694 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26888070 | 26888171 | 26888070 | ID=MS.gene023809.t1.exon5;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26888070 | 26888171 | 26888070 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26887870 | 26887977 | 26887870 | ID=MS.gene023809.t1.exon6;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26887870 | 26887977 | 26887870 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| chr7.1 | exon | 26887248 | 26887514 | 26887248 | ID=MS.gene023809.t1.exon7;Parent=MS.gene023809.t1 |
| chr7.1 | CDS | 26887248 | 26887514 | 26887248 | ID=cds.MS.gene023809.t1;Parent=MS.gene023809.t1 |
| Gene Sequence |
| Protein sequence |
