Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52182.t1 | XP_024627166.1 | 98.1 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 2.30E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52182.t1 | Q29Q28 | 78.7 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 9.4e-155 | 547.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52182.t1 | A2Q3P6 | 98.1 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 1.6e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene52182 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene52182 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene52182 | 0.818808 | 1.62E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene52182 | 0.801536 | 8.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52182 | MS.gene27660 | PPI |
| MS.gene52182 | MS.gene023809 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52182.t1 | MTR_7g076310 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| MS.gene52182.t1 | MTR_7g076310 | 91.413 | 361 | 4 | 3 | 1 | 359 | 1 | 336 | 0.0 | 633 |
| MS.gene52182.t1 | MTR_7g076310 | 97.479 | 238 | 3 | 2 | 124 | 359 | 1 | 237 | 5.84e-165 | 460 |
| MS.gene52182.t1 | MTR_5g038900 | 24.756 | 307 | 200 | 9 | 27 | 310 | 17 | 315 | 1.77e-17 | 82.8 |
| MS.gene52182.t1 | MTR_2g096300 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 3.32e-14 | 73.2 |
| MS.gene52182.t1 | MTR_4g063040 | 26.160 | 237 | 163 | 6 | 103 | 331 | 115 | 347 | 3.49e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52182.t1 | AT4G23010 | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| MS.gene52182.t1 | AT1G12600 | 79.050 | 358 | 63 | 3 | 2 | 359 | 4 | 349 | 0.0 | 556 |
| MS.gene52182.t1 | AT4G23010 | 75.134 | 374 | 63 | 2 | 3 | 359 | 2 | 362 | 0.0 | 550 |
| MS.gene52182.t1 | AT4G23010 | 69.554 | 404 | 63 | 2 | 3 | 359 | 2 | 392 | 0.0 | 537 |
| MS.gene52182.t1 | AT1G14360 | 24.620 | 329 | 211 | 10 | 27 | 332 | 17 | 331 | 6.93e-17 | 80.9 |
| MS.gene52182.t1 | AT2G02810 | 26.568 | 271 | 174 | 8 | 26 | 276 | 16 | 281 | 3.55e-16 | 79.0 |
| MS.gene52182.t1 | AT3G46180 | 24.756 | 307 | 189 | 10 | 66 | 347 | 57 | 346 | 3.40e-14 | 73.2 |
| MS.gene52182.t1 | AT5G59740 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 5.86e-13 | 69.7 |
Find 82 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7.4:+29177374 | None:intergenic |
| TTCTTTGGATATCTTGTTAA+TGG | 0.171694 | 7.4:-29180316 | MS.gene52182:CDS |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7.4:-29179669 | MS.gene52182:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7.4:-29177832 | MS.gene52182:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7.4:+29177277 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7.4:-29180331 | MS.gene52182:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7.4:+29179655 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7.4:-29180343 | MS.gene52182:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7.4:-29179574 | MS.gene52182:CDS |
| TTCAGGAATATGTGTATAAC+AGG | 0.287196 | 7.4:-29179854 | MS.gene52182:intron |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7.4:-29178718 | MS.gene52182:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7.4:+29177782 | None:intergenic |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7.4:+29178747 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7.4:+29178854 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7.4:-29178864 | MS.gene52182:CDS |
| TCGATCACCTGTGTGGTATC+AGG | 0.339457 | 7.4:+29178651 | None:intergenic |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7.4:-29180397 | MS.gene52182:CDS |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7.4:+29177287 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7.4:-29180413 | None:intergenic |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7.4:+29180354 | None:intergenic |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7.4:+29178778 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7.4:-29178750 | MS.gene52182:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7.4:-29178807 | MS.gene52182:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7.4:-29178732 | MS.gene52182:CDS |
| TTTCTTGTTTCAGCTATGGT+TGG | 0.441806 | 7.4:-29179722 | MS.gene52182:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7.4:+29179670 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7.4:+29180355 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7.4:-29177868 | MS.gene52182:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7.4:-29177240 | MS.gene52182:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7.4:-29178880 | MS.gene52182:CDS |
| TGGTACTTCACATTTATTCA+AGG | 0.453873 | 7.4:-29179702 | MS.gene52182:CDS |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7.4:-29177183 | None:intergenic |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7.4:+29179537 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7.4:+29178825 | None:intergenic |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7.4:+29177296 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7.4:-29178724 | MS.gene52182:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7.4:-29178047 | MS.gene52182:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7.4:-29179649 | MS.gene52182:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7.4:-29177435 | MS.gene52182:intron |
| AGCATAGGTGGGATTAAGAA+AGG | 0.503212 | 7.4:+29178020 | None:intergenic |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7.4:-29177992 | MS.gene52182:CDS |
| GAAGCTTTCTGCTGTACTCA+TGG | 0.507955 | 7.4:-29179604 | MS.gene52182:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7.4:+29177292 | None:intergenic |
| TGGACTAATACTCATAGCTA+TGG | 0.524183 | 7.4:-29177351 | MS.gene52182:CDS |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7.4:-29177239 | MS.gene52182:CDS |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7.4:-29178814 | MS.gene52182:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7.4:-29177845 | MS.gene52182:CDS |
| GGTACTTCACATTTATTCAA+GGG | 0.532918 | 7.4:-29179701 | MS.gene52182:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7.4:-29178879 | MS.gene52182:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7.4:+29177809 | None:intergenic |
| TAAATTTACCATGGCTGTAG+TGG | 0.534678 | 7.4:+29177768 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7.4:-29177776 | MS.gene52182:intron |
| AAGCTTTCTGCTGTACTCAT+GGG | 0.546977 | 7.4:-29179603 | MS.gene52182:CDS |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7.4:-29179582 | MS.gene52182:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7.4:-29177976 | MS.gene52182:intron |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7.4:+29178873 | None:intergenic |
| TAGGTGAAGAAGATGATGAA+AGG | 0.558799 | 7.4:-29177199 | MS.gene52182:CDS |
| GAAGAGTTGGGAACACTCCA+TGG | 0.566100 | 7.4:-29177227 | MS.gene52182:CDS |
| AGATGATGAAAGGAGGCCCT+TGG | 0.573444 | 7.4:-29177189 | MS.gene52182:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7.4:-29179638 | MS.gene52182:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7.4:-29178048 | MS.gene52182:CDS |
| GCTGTACTCATGGGATCACA+TGG | 0.577442 | 7.4:-29179594 | MS.gene52182:CDS |
| GGACTAATACTCATAGCTAT+GGG | 0.581423 | 7.4:-29177350 | MS.gene52182:CDS |
| GGAACACTCCATGGTTCTGT+AGG | 0.587445 | 7.4:-29177218 | MS.gene52182:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7.4:+29178713 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7.4:-29179583 | MS.gene52182:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7.4:+29177173 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7.4:+29177859 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7.4:-29177371 | MS.gene52182:CDS |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7.4:+29177172 | None:intergenic |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7.4:-29177376 | MS.gene52182:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7.4:+29179538 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7.4:-29180369 | MS.gene52182:CDS |
| CTTCTTCACCTACAGAACCA+TGG | 0.652962 | 7.4:+29177210 | None:intergenic |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7.4:-29177377 | MS.gene52182:CDS |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7.4:-29179529 | MS.gene52182:intron |
| GTGAAGAAGATGATGAAAGG+AGG | 0.673119 | 7.4:-29177196 | MS.gene52182:CDS |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7.4:+29177858 | None:intergenic |
| TATGAATCCTGATACCACAC+AGG | 0.699516 | 7.4:-29178658 | MS.gene52182:intron |
| TAGAAAATCGATCACCTGTG+TGG | 0.702061 | 7.4:+29178644 | None:intergenic |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7.4:-29180412 | MS.gene52182:CDS |
| TCTTGTTAATGGTATCTGTG+AGG | 0.723438 | 7.4:-29180305 | MS.gene52182:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGGATTTATTATAT+TGG | + | chr7.4:29178685-29178704 | None:intergenic | 10.0% |
| !! | AATTTAAAAAATCACAAATT+TGG | + | chr7.4:29179029-29179048 | None:intergenic | 10.0% |
| !!! | ATATATGAAGTTTTTTTTTA+TGG | - | chr7.4:29177569-29177588 | MS.gene52182:intron | 10.0% |
| !! | TCAAATAAGTTAATCTAAAT+AGG | + | chr7.4:29179121-29179140 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | + | chr7.4:29179983-29180002 | None:intergenic | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | - | chr7.4:29178692-29178711 | MS.gene52182:CDS | 15.0% |
| !!! | AAGTATAAGAATTTTAAATG+CGG | + | chr7.4:29179500-29179519 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | + | chr7.4:29179663-29179682 | None:intergenic | 15.0% |
| !! | AGAACCTATAACATAAAATT+TGG | + | chr7.4:29178699-29178718 | None:intergenic | 20.0% |
| !! | AGTATTAAATACTTGATACT+TGG | - | chr7.4:29179995-29180014 | MS.gene52182:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | - | chr7.4:29178390-29178409 | MS.gene52182:intron | 20.0% |
| !! | TTCAAAAATGGATAAAGTAA+AGG | + | chr7.4:29178132-29178151 | None:intergenic | 20.0% |
| !!! | TTTACTTTATCCATTTTTGA+AGG | - | chr7.4:29178131-29178150 | MS.gene52182:intron | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | - | chr7.4:29179518-29179537 | MS.gene52182:intron | 20.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | + | chr7.4:29178144-29178163 | None:intergenic | 25.0% |
| ! | AAAATGGATAAAGTAAAGGT+AGG | + | chr7.4:29178128-29178147 | None:intergenic | 25.0% |
| ! | AAATCTGAATTACTGAAAGT+TGG | - | chr7.4:29179054-29179073 | MS.gene52182:intron | 25.0% |
| ! | ATTACAGTTTCATTTGATAC+TGG | - | chr7.4:29177793-29177812 | MS.gene52182:CDS | 25.0% |
| ! | ATTCGGATTAATCTGATATT+TGG | - | chr7.4:29177688-29177707 | MS.gene52182:intron | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | + | chr7.4:29178058-29178077 | None:intergenic | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | - | chr7.4:29178064-29178083 | MS.gene52182:intron | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | + | chr7.4:29179904-29179923 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | + | chr7.4:29178538-29178557 | None:intergenic | 25.0% |
| ! | TTCTTTGGATATCTTGTTAA+TGG | - | chr7.4:29177277-29177296 | MS.gene52182:CDS | 25.0% |
| ! | TTGTGATAGTAAATTTACCA+TGG | + | chr7.4:29179837-29179856 | None:intergenic | 25.0% |
| !! | GAAAAACTTGAAATCTGTTT+TGG | + | chr7.4:29179365-29179384 | None:intergenic | 25.0% |
| !! | GGTTTTTCTTGAATTCATTT+TGG | - | chr7.4:29177336-29177355 | MS.gene52182:CDS | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | - | chr7.4:29179748-29179767 | MS.gene52182:intron | 25.0% |
| !! | TGTGGATTACAAAAAAATAG+CGG | + | chr7.4:29178450-29178469 | None:intergenic | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | - | chr7.4:29178213-29178232 | MS.gene52182:intron | 25.0% |
| !! | TTTTTATGGATTTAATCCTC+TGG | - | chr7.4:29177583-29177602 | MS.gene52182:intron | 25.0% |
| !!! | AGATTTCAAGTTTTTCTTCT+TGG | - | chr7.4:29179369-29179388 | MS.gene52182:intron | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | - | chr7.4:29178143-29178162 | MS.gene52182:intron | 25.0% |
| !!! | TCACTTTTATTTTCCATTGA+AGG | + | chr7.4:29177826-29177845 | None:intergenic | 25.0% |
| !!! | TTTTAGAGAAAGAGCTTATA+CGG | - | chr7.4:29179304-29179323 | MS.gene52182:intron | 25.0% |
| !!! | TTTTTTTTCAGTTACCTTTG+TGG | + | chr7.4:29178081-29178100 | None:intergenic | 25.0% |
| AAACCATTAACAGAACAACA+TGG | - | chr7.4:29180216-29180235 | MS.gene52182:intron | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | - | chr7.4:29178476-29178495 | MS.gene52182:intron | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | - | chr7.4:29180217-29180236 | MS.gene52182:intron | 30.0% | |
| ATATTGTGAAATAGTGGCTA+TGG | - | chr7.4:29178396-29178415 | MS.gene52182:intron | 30.0% | |
| ATCACCAACTAAATTACCAT+TGG | + | chr7.4:29180040-29180059 | None:intergenic | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | - | chr7.4:29178239-29178258 | MS.gene52182:intron | 30.0% | |
| ATTAATCCGAATTCAAACAC+TGG | + | chr7.4:29177680-29177699 | None:intergenic | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | + | chr7.4:29179866-29179885 | None:intergenic | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | + | chr7.4:29177926-29177945 | None:intergenic | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | + | chr7.4:29178591-29178610 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | - | chr7.4:29179864-29179883 | MS.gene52182:intron | 30.0% | |
| GATTTAAACATAATCTGTGC+AGG | + | chr7.4:29178059-29178078 | None:intergenic | 30.0% | |
| GCAGATATATACTCATGTAT+TGG | + | chr7.4:29178771-29178790 | None:intergenic | 30.0% | |
| GGTACTTCACATTTATTCAA+GGG | - | chr7.4:29177892-29177911 | MS.gene52182:intron | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | - | chr7.4:29178779-29178798 | MS.gene52182:CDS | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | + | chr7.4:29179971-29179990 | None:intergenic | 30.0% | |
| TCACCAACTAAATTACCATT+GGG | + | chr7.4:29180039-29180058 | None:intergenic | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | + | chr7.4:29178477-29178496 | None:intergenic | 30.0% | |
| TGGTACTTCACATTTATTCA+AGG | - | chr7.4:29177891-29177910 | MS.gene52182:intron | 30.0% | |
| TTCAGGAATATGTGTATAAC+AGG | - | chr7.4:29177739-29177758 | MS.gene52182:intron | 30.0% | |
| TTCATGTTCACAGGTAAATT+TGG | - | chr7.4:29179626-29179645 | MS.gene52182:CDS | 30.0% | |
| TTTCCCAATGGTAATTTAGT+TGG | - | chr7.4:29180033-29180052 | MS.gene52182:intron | 30.0% | |
| TTTGAGAGAGCTTATAGAAA+CGG | - | chr7.4:29179174-29179193 | MS.gene52182:intron | 30.0% | |
| ! | AATTCTCCTGTAAAAAGCAT+AGG | + | chr7.4:29179591-29179610 | None:intergenic | 30.0% |
| ! | GAATTGAAAGTTTTTCCCAA+TGG | - | chr7.4:29180021-29180040 | MS.gene52182:intron | 30.0% |
| ! | TGTATAACAGGCTTCATTTT+AGG | - | chr7.4:29177751-29177770 | MS.gene52182:intron | 30.0% |
| ! | TTCTCATTTGTGTGATTTTC+AGG | - | chr7.4:29177722-29177741 | MS.gene52182:intron | 30.0% |
| ! | TTGGTTATGGATTCTTTTCT+TGG | - | chr7.4:29178888-29178907 | MS.gene52182:intron | 30.0% |
| ! | TTTCTTTCTTGTTTCAGCTA+TGG | - | chr7.4:29177867-29177886 | MS.gene52182:intron | 30.0% |
| !! | ATGTTTTAGACACTATGTCA+TGG | - | chr7.4:29178602-29178621 | MS.gene52182:intron | 30.0% |
| !! | CTGTTTCTGATTTACCTTAA+TGG | - | chr7.4:29177924-29177943 | MS.gene52182:intron | 30.0% |
| !! | GTTGCTAATTCAACTTTTTC+TGG | - | chr7.4:29179399-29179418 | MS.gene52182:intron | 30.0% |
| AATGAGAAATTGTTGCCATC+TGG | + | chr7.4:29177242-29177261 | None:intergenic | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | + | chr7.4:29178849-29178868 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | - | chr7.4:29180158-29180177 | MS.gene52182:intron | 35.0% | |
| ACTAATACACCATACACGTA+GGG | + | chr7.4:29179737-29179756 | None:intergenic | 35.0% | |
| ACTATATCAGAGGACAATAG+TGG | - | chr7.4:29178486-29178505 | MS.gene52182:intron | 35.0% | |
| ATGAGAAATTGTTGCCATCT+GGG | + | chr7.4:29177241-29177260 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | - | chr7.4:29177250-29177269 | MS.gene52182:CDS | 35.0% | |
| CAGGAGAATTATTCAAAGCA+TGG | - | chr7.4:29179601-29179620 | MS.gene52182:CDS | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | - | chr7.4:29179761-29179780 | MS.gene52182:intron | 35.0% | |
| GGACTAATACTCATAGCTAT+GGG | - | chr7.4:29180243-29180262 | MS.gene52182:intron | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | + | chr7.4:29178517-29178536 | None:intergenic | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | + | chr7.4:29179828-29179847 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | + | chr7.4:29179891-29179910 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | + | chr7.4:29179738-29179757 | None:intergenic | 35.0% | |
| TAGGTGAAGAAGATGATGAA+AGG | - | chr7.4:29180394-29180413 | MS.gene52182:CDS | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | - | chr7.4:29178843-29178862 | MS.gene52182:CDS | 35.0% | |
| TCTCTAATCACGGAAAATAG+TGG | - | chr7.4:29178249-29178268 | MS.gene52182:intron | 35.0% | |
| TCTTGTTAATGGTATCTGTG+AGG | - | chr7.4:29177288-29177307 | MS.gene52182:CDS | 35.0% | |
| TGGACTAATACTCATAGCTA+TGG | - | chr7.4:29180242-29180261 | MS.gene52182:intron | 35.0% | |
| TTCGGTTAGGAGATAAAAGT+CGG | - | chr7.4:29177637-29177656 | MS.gene52182:intron | 35.0% | |
| TTCTAGCCAGTGTTTGAATT+CGG | - | chr7.4:29177671-29177690 | MS.gene52182:intron | 35.0% | |
| TTGTGTCTTTGTGTGTAGAA+GGG | - | chr7.4:29177452-29177471 | MS.gene52182:intron | 35.0% | |
| TTTGTGTCTTTGTGTGTAGA+AGG | - | chr7.4:29177451-29177470 | MS.gene52182:intron | 35.0% | |
| ! | ACTACTGTTGATGAAGAGTT+GGG | - | chr7.4:29180354-29180373 | MS.gene52182:CDS | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | + | chr7.4:29177975-29177994 | None:intergenic | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | - | chr7.4:29178173-29178192 | MS.gene52182:intron | 35.0% |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | + | chr7.4:29180304-29180323 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | + | chr7.4:29180309-29180328 | None:intergenic | 35.0% |
| ! | GACACAGTGTTGTTAAATAG+CGG | - | chr7.4:29178315-29178334 | MS.gene52182:intron | 35.0% |
| ! | GCTTCACATAAGTTTTCCAT+GGG | + | chr7.4:29177974-29177993 | None:intergenic | 35.0% |
| ! | TACATGCTCTCTTCTCTTTT+TGG | - | chr7.4:29177315-29177334 | MS.gene52182:CDS | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | - | chr7.4:29180353-29180372 | MS.gene52182:CDS | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | - | chr7.4:29178167-29178186 | MS.gene52182:intron | 35.0% |
| ! | TTGTTGAGAAAGCACAAAGA+TGG | + | chr7.4:29178986-29179005 | None:intergenic | 35.0% |
| ! | TTTCTTGTTTCAGCTATGGT+TGG | - | chr7.4:29177871-29177890 | MS.gene52182:intron | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | + | chr7.4:29180319-29180338 | None:intergenic | 35.0% |
| !! | GTTGGTGTTGTTATGATAAC+CGG | - | chr7.4:29178861-29178880 | MS.gene52182:CDS | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | - | chr7.4:29178148-29178167 | MS.gene52182:intron | 35.0% |
| !!! | AAGTTGGTCACTAGTTTTGA+CGG | - | chr7.4:29179070-29179089 | MS.gene52182:intron | 35.0% |
| !!! | GATTTAATCCTCTGGTTTTC+GGG | - | chr7.4:29177591-29177610 | MS.gene52182:intron | 35.0% |
| !!! | GGATTTAATCCTCTGGTTTT+CGG | - | chr7.4:29177590-29177609 | MS.gene52182:intron | 35.0% |
| !!! | TACTGGTTTTTAGCCTTCAA+TGG | - | chr7.4:29177810-29177829 | MS.gene52182:CDS | 35.0% |
| AAGCTTTCTGCTGTACTCAT+GGG | - | chr7.4:29177990-29178009 | MS.gene52182:CDS | 40.0% | |
| AGAATCCATAACCAAAGCAC+CGG | + | chr7.4:29178883-29178902 | None:intergenic | 40.0% | |
| AGCACCAAAAAGGGCAATTA+GGG | + | chr7.4:29179804-29179823 | None:intergenic | 40.0% | |
| AGCATAGGTGGGATTAAGAA+AGG | + | chr7.4:29179576-29179595 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | + | chr7.4:29180222-29180241 | None:intergenic | 40.0% | |
| GCTTGCTTGTGAAACCATTA+AGG | + | chr7.4:29177941-29177960 | None:intergenic | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | - | chr7.4:29178011-29178030 | MS.gene52182:CDS | 40.0% | |
| GTGAAGAAGATGATGAAAGG+AGG | - | chr7.4:29180397-29180416 | MS.gene52182:CDS | 40.0% | |
| GTTCTGCCAGTGATGATAAT+GGG | - | chr7.4:29178714-29178733 | MS.gene52182:CDS | 40.0% | |
| TAGAAAATCGATCACCTGTG+TGG | + | chr7.4:29178952-29178971 | None:intergenic | 40.0% | |
| TATGAATCCTGATACCACAC+AGG | - | chr7.4:29178935-29178954 | MS.gene52182:intron | 40.0% | |
| TCGGTTAGGAGATAAAAGTC+GGG | - | chr7.4:29177638-29177657 | MS.gene52182:intron | 40.0% | |
| TCTTCTCAGACCAGGAATAA+AGG | + | chr7.4:29178742-29178761 | None:intergenic | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | - | chr7.4:29178019-29178038 | MS.gene52182:CDS | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | - | chr7.4:29177944-29177963 | MS.gene52182:intron | 40.0% | |
| TGTGTCTTTGTGTGTAGAAG+GGG | - | chr7.4:29177453-29177472 | MS.gene52182:intron | 40.0% | |
| TGTTATGATAACCGGTGCTT+TGG | - | chr7.4:29178869-29178888 | MS.gene52182:CDS | 40.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | - | chr7.4:29177262-29177281 | MS.gene52182:CDS | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | - | chr7.4:29180222-29180241 | MS.gene52182:intron | 40.0% | |
| ! | ACACTGGCTAGAACAATCAT+TGG | + | chr7.4:29177664-29177683 | None:intergenic | 40.0% |
| ! | CTCCTGTAAAAAGCATAGGT+GGG | + | chr7.4:29179587-29179606 | None:intergenic | 40.0% |
| ! | GAGAAAGCACAAAGATGGTT+AGG | + | chr7.4:29178981-29179000 | None:intergenic | 40.0% |
| ! | GGATATTTTCTTCTCAGACC+AGG | + | chr7.4:29178750-29178769 | None:intergenic | 40.0% |
| ! | TCTCCTGTAAAAAGCATAGG+TGG | + | chr7.4:29179588-29179607 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | - | chr7.4:29178786-29178805 | MS.gene52182:CDS | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | - | chr7.4:29177624-29177643 | MS.gene52182:intron | 40.0% |
| !! | ATAATGGGTGCCTTTATTCC+TGG | - | chr7.4:29178729-29178748 | MS.gene52182:CDS | 40.0% |
| !! | ATCCCACCTATGCTTTTTAC+AGG | - | chr7.4:29179582-29179601 | MS.gene52182:CDS | 40.0% |
| !! | GGAAAATGGCTCTGATAATC+TGG | - | chr7.4:29177612-29177631 | MS.gene52182:intron | 40.0% |
| !! | GTACAAAGTGTTGGCAATTG+TGG | + | chr7.4:29178468-29178487 | None:intergenic | 40.0% |
| AGCATGGACTTCATGTTCAC+AGG | - | chr7.4:29179617-29179636 | MS.gene52182:CDS | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | + | chr7.4:29179799-29179818 | None:intergenic | 45.0% | |
| CAGCACCAAAAAGGGCAATT+AGG | + | chr7.4:29179805-29179824 | None:intergenic | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | - | chr7.4:29178631-29178650 | MS.gene52182:intron | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | - | chr7.4:29179546-29179565 | MS.gene52182:CDS | 45.0% | |
| CTTCTTCACCTACAGAACCA+TGG | + | chr7.4:29180386-29180405 | None:intergenic | 45.0% | |
| GAAGCTTTCTGCTGTACTCA+TGG | - | chr7.4:29177989-29178008 | MS.gene52182:CDS | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | - | chr7.4:29178875-29178894 | MS.gene52182:CDS | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | - | chr7.4:29178010-29178029 | MS.gene52182:CDS | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | - | chr7.4:29178713-29178732 | MS.gene52182:CDS | 45.0% | |
| GTGCGTCTGCTAGTGTAAAT+AGG | + | chr7.4:29178818-29178837 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | + | chr7.4:29179813-29179832 | None:intergenic | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | + | chr7.4:29179787-29179806 | None:intergenic | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | + | chr7.4:29178723-29178742 | None:intergenic | 45.0% |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | - | chr7.4:29179797-29179816 | MS.gene52182:intron | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | - | chr7.4:29177619-29177638 | MS.gene52182:intron | 45.0% |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | - | chr7.4:29177196-29177215 | MS.gene52182:CDS | 45.0% |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | + | chr7.4:29180288-29180307 | None:intergenic | 45.0% |
| !!! | TCCTCTGGTTTTCGGGAAAA+TGG | - | chr7.4:29177598-29177617 | MS.gene52182:intron | 45.0% |
| AAGGCTCTCTTAGGTATGGC+AGG | + | chr7.4:29180300-29180319 | None:intergenic | 50.0% | |
| AGATGATGAAAGGAGGCCCT+TGG | - | chr7.4:29180404-29180423 | MS.gene52182:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | + | chr7.4:29179726-29179745 | None:intergenic | 50.0% | |
| CACTCTCTGATAGACCCAGA+TGG | - | chr7.4:29177224-29177243 | MS.gene52182:CDS | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | + | chr7.4:29179814-29179833 | None:intergenic | 50.0% | |
| GAAGAGTTGGGAACACTCCA+TGG | - | chr7.4:29180366-29180385 | MS.gene52182:CDS | 50.0% | |
| GCAAGCAAATGGTGAACCCA+TGG | - | chr7.4:29177955-29177974 | MS.gene52182:intron | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | + | chr7.4:29178290-29178309 | None:intergenic | 50.0% | |
| GCTATGGCACTGTTGCATAG+CGG | - | chr7.4:29178412-29178431 | MS.gene52182:intron | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | - | chr7.4:29179545-29179564 | MS.gene52182:CDS | 50.0% | |
| GCTGTACTCATGGGATCACA+TGG | - | chr7.4:29177999-29178018 | MS.gene52182:CDS | 50.0% | |
| TCGATCACCTGTGTGGTATC+AGG | + | chr7.4:29178945-29178964 | None:intergenic | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | - | chr7.4:29179725-29179744 | MS.gene52182:intron | 50.0% | |
| ! | GGAACACTCCATGGTTCTGT+AGG | - | chr7.4:29180375-29180394 | MS.gene52182:CDS | 50.0% |
| !! | GCCATTTTCCCGAAAACCAG+AGG | + | chr7.4:29177602-29177621 | None:intergenic | 50.0% |
| GCTAATGCGTTGTAGTGCGG+TGG | + | chr7.4:29178287-29178306 | None:intergenic | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | - | chr7.4:29179817-29179836 | MS.gene52182:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 29177184 | 29180431 | 29177184 | ID=MS.gene52182 |
| chr7.4 | mRNA | 29177184 | 29180431 | 29177184 | ID=MS.gene52182.t1;Parent=MS.gene52182 |
| chr7.4 | exon | 29180306 | 29180431 | 29180306 | ID=MS.gene52182.t1.exon1;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29180306 | 29180431 | 29180306 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29179843 | 29179871 | 29179843 | ID=MS.gene52182.t1.exon2;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29179843 | 29179871 | 29179843 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29179530 | 29179731 | 29179530 | ID=MS.gene52182.t1.exon3;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29179530 | 29179731 | 29179530 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29178659 | 29178901 | 29178659 | ID=MS.gene52182.t1.exon4;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29178659 | 29178901 | 29178659 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29177977 | 29178078 | 29177977 | ID=MS.gene52182.t1.exon5;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29177977 | 29178078 | 29177977 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29177777 | 29177884 | 29177777 | ID=MS.gene52182.t1.exon6;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29177777 | 29177884 | 29177777 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| chr7.4 | exon | 29177184 | 29177453 | 29177184 | ID=MS.gene52182.t1.exon7;Parent=MS.gene52182.t1 |
| chr7.4 | CDS | 29177184 | 29177453 | 29177184 | ID=cds.MS.gene52182.t1;Parent=MS.gene52182.t1 |
| Gene Sequence |
| Protein sequence |
