Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27660.t1 | XP_024627166.1 | 97.5 | 361 | 6 | 2 | 1 | 359 | 1 | 360 | 1.50E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27660.t1 | Q29Q28 | 78.4 | 357 | 64 | 1 | 3 | 359 | 2 | 345 | 2.1e-154 | 546.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27660.t1 | A2Q3P6 | 97.5 | 361 | 6 | 2 | 1 | 359 | 1 | 360 | 1.1e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52182 | MS.gene27660 | PPI |
| MS.gene023809 | MS.gene27660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27660.t1 | MTR_7g076310 | 97.507 | 361 | 6 | 2 | 1 | 359 | 1 | 360 | 0.0 | 715 |
| MS.gene27660.t1 | MTR_7g076310 | 90.859 | 361 | 6 | 3 | 1 | 359 | 1 | 336 | 0.0 | 629 |
| MS.gene27660.t1 | MTR_7g076310 | 96.639 | 238 | 5 | 2 | 124 | 359 | 1 | 237 | 1.45e-163 | 457 |
| MS.gene27660.t1 | MTR_5g038900 | 24.430 | 307 | 201 | 9 | 27 | 310 | 17 | 315 | 9.15e-17 | 80.5 |
| MS.gene27660.t1 | MTR_2g096300 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 4.90e-14 | 72.8 |
| MS.gene27660.t1 | MTR_4g063040 | 26.160 | 237 | 163 | 6 | 103 | 331 | 115 | 347 | 5.14e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27660.t1 | AT4G23010 | 78.431 | 357 | 64 | 1 | 3 | 359 | 2 | 345 | 0.0 | 557 |
| MS.gene27660.t1 | AT1G12600 | 78.492 | 358 | 65 | 2 | 2 | 359 | 4 | 349 | 0.0 | 554 |
| MS.gene27660.t1 | AT4G23010 | 74.866 | 374 | 64 | 2 | 3 | 359 | 2 | 362 | 0.0 | 547 |
| MS.gene27660.t1 | AT4G23010 | 69.307 | 404 | 64 | 2 | 3 | 359 | 2 | 392 | 0.0 | 535 |
| MS.gene27660.t1 | AT1G14360 | 24.316 | 329 | 212 | 10 | 27 | 332 | 17 | 331 | 3.20e-16 | 79.0 |
| MS.gene27660.t1 | AT2G02810 | 26.199 | 271 | 175 | 8 | 26 | 276 | 16 | 281 | 1.36e-15 | 77.4 |
| MS.gene27660.t1 | AT3G46180 | 24.430 | 307 | 190 | 10 | 66 | 347 | 57 | 346 | 1.16e-13 | 71.6 |
| MS.gene27660.t1 | AT5G59740 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 5.34e-13 | 69.7 |
Find 82 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7.2:+29347330 | None:intergenic |
| TTCTTTGGATATCTTGTTAA+TGG | 0.171694 | 7.2:-29350415 | MS.gene27660:CDS |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7.2:-29349768 | MS.gene27660:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7.2:-29348012 | MS.gene27660:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7.2:+29347233 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7.2:-29350430 | MS.gene27660:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7.2:+29349754 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7.2:-29350442 | MS.gene27660:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7.2:-29349673 | MS.gene27660:CDS |
| TTCAGGAATATGTGTATAAC+AGG | 0.287196 | 7.2:-29349953 | MS.gene27660:intron |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7.2:-29348817 | MS.gene27660:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7.2:+29347962 | None:intergenic |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7.2:+29348846 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7.2:+29348953 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7.2:-29348963 | MS.gene27660:CDS |
| TTGATCACCTGTGTGGTATC+AGG | 0.339457 | 7.2:+29348750 | None:intergenic |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7.2:-29350496 | MS.gene27660:CDS |
| GAAGAGTTGGGAACATTTCA+TGG | 0.354101 | 7.2:-29347183 | MS.gene27660:CDS |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7.2:+29347243 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7.2:-29350512 | None:intergenic |
| GAAGCTTTCTGCTGTACTAA+TGG | 0.381721 | 7.2:-29349703 | MS.gene27660:CDS |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7.2:+29350453 | None:intergenic |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7.2:+29348877 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7.2:-29348849 | MS.gene27660:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7.2:-29348906 | MS.gene27660:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7.2:-29348831 | MS.gene27660:CDS |
| TTTCTTGTTTCAGCTATGGT+TGG | 0.441806 | 7.2:-29349821 | MS.gene27660:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7.2:+29349769 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7.2:+29350454 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7.2:-29348048 | MS.gene27660:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7.2:-29347196 | MS.gene27660:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7.2:-29348979 | MS.gene27660:CDS |
| TGGTACTTCACATTTATTCA+AGG | 0.453873 | 7.2:-29349801 | MS.gene27660:CDS |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7.2:-29347139 | None:intergenic |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7.2:+29349636 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7.2:+29348924 | None:intergenic |
| AAGCTTTCTGCTGTACTAAT+GGG | 0.468608 | 7.2:-29349702 | MS.gene27660:CDS |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7.2:+29347252 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7.2:-29348823 | MS.gene27660:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7.2:-29348227 | MS.gene27660:CDS |
| GGAACATTTCATGGTTCTGT+AGG | 0.482180 | 7.2:-29347174 | MS.gene27660:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7.2:-29349748 | MS.gene27660:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7.2:-29347391 | MS.gene27660:intron |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7.2:-29348172 | MS.gene27660:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7.2:+29347248 | None:intergenic |
| AGCACAGGTGGGATTAAGAA+AGG | 0.520945 | 7.2:+29348200 | None:intergenic |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7.2:-29347195 | MS.gene27660:CDS |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7.2:-29348913 | MS.gene27660:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7.2:-29348025 | MS.gene27660:CDS |
| GGTACTTCACATTTATTCAA+GGG | 0.532918 | 7.2:-29349800 | MS.gene27660:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7.2:-29348978 | MS.gene27660:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7.2:+29347989 | None:intergenic |
| TAAATTTACCATGGCTGTAG+TGG | 0.534678 | 7.2:+29347948 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7.2:-29347956 | MS.gene27660:intron |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7.2:-29349681 | MS.gene27660:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7.2:-29348156 | MS.gene27660:intron |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7.2:+29348972 | None:intergenic |
| TAGGTGAAGAAGATGATGAA+AGG | 0.558799 | 7.2:-29347155 | MS.gene27660:CDS |
| TGGACTAATACTCATAGCCA+TGG | 0.572276 | 7.2:-29347307 | MS.gene27660:CDS |
| AGATGATGAAAGGAGGCCCT+TGG | 0.573444 | 7.2:-29347145 | MS.gene27660:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7.2:-29349737 | MS.gene27660:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7.2:-29348228 | MS.gene27660:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7.2:+29348812 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7.2:-29349682 | MS.gene27660:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7.2:+29347129 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7.2:+29348039 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7.2:-29347327 | MS.gene27660:CDS |
| CATCTTCAATGTGATTCCCA+TGG | 0.618460 | 7.2:+29347290 | None:intergenic |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7.2:+29347128 | None:intergenic |
| GGACTAATACTCATAGCCAT+GGG | 0.638915 | 7.2:-29347306 | MS.gene27660:CDS |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7.2:-29347332 | MS.gene27660:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7.2:+29349637 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7.2:-29350468 | MS.gene27660:CDS |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7.2:-29347333 | MS.gene27660:CDS |
| GCTGTACTAATGGGATCACA+TGG | 0.662812 | 7.2:-29349693 | MS.gene27660:CDS |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7.2:-29349628 | MS.gene27660:intron |
| GTGAAGAAGATGATGAAAGG+AGG | 0.673119 | 7.2:-29347152 | MS.gene27660:CDS |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7.2:+29348038 | None:intergenic |
| TATGAATCCTGATACCACAC+AGG | 0.699516 | 7.2:-29348757 | MS.gene27660:intron |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7.2:-29350511 | MS.gene27660:CDS |
| TCTTGTTAATGGTATCTGTG+AGG | 0.723438 | 7.2:-29350404 | MS.gene27660:intron |
| TGGAAAATTGATCACCTGTG+TGG | 0.787285 | 7.2:+29348743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGGATTTATTATAT+TGG | + | chr7.2:29348641-29348660 | None:intergenic | 10.0% |
| !! | AAATTAATCATATATTTGTT+GGG | + | chr7.2:29348957-29348976 | None:intergenic | 10.0% |
| !! | AGTTAAATCATTAATTTAAT+TGG | - | chr7.2:29350133-29350152 | MS.gene27660:intron | 10.0% |
| !! | TAAATTAATCATATATTTGT+TGG | + | chr7.2:29348958-29348977 | None:intergenic | 10.0% |
| !!! | ATATATGAAGTTTTTTTTTA+TGG | - | chr7.2:29347525-29347544 | MS.gene27660:intron | 10.0% |
| !! | ATTCAAATTAATCACAAATT+CGG | + | chr7.2:29348983-29349002 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | + | chr7.2:29349858-29349877 | None:intergenic | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | - | chr7.2:29348648-29348667 | MS.gene27660:intron | 15.0% |
| !!! | AAGTATAAGAATTTTAAATG+CGG | + | chr7.2:29349375-29349394 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | + | chr7.2:29349538-29349557 | None:intergenic | 15.0% |
| !! | ACTAAAGATTAAATCATTGA+CGG | - | chr7.2:29349955-29349974 | MS.gene27660:intron | 20.0% |
| !! | AGAACCTATAACATAAAATT+TGG | + | chr7.2:29348655-29348674 | None:intergenic | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | - | chr7.2:29348345-29348364 | MS.gene27660:intron | 20.0% |
| !! | TAGTTAAAGTAGAATCAAAT+AGG | + | chr7.2:29349996-29350015 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | - | chr7.2:29349393-29349412 | MS.gene27660:intron | 20.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | + | chr7.2:29348099-29348118 | None:intergenic | 25.0% |
| ! | AAACAGTATCCTTCAAAAAT+GGG | + | chr7.2:29348098-29348117 | None:intergenic | 25.0% |
| ! | ATTACAGTTTCATTTGATAC+TGG | - | chr7.2:29347749-29347768 | MS.gene27660:intron | 25.0% |
| ! | ATTCGGATTAATGTGATATT+TGG | - | chr7.2:29347644-29347663 | MS.gene27660:intron | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | + | chr7.2:29348014-29348033 | None:intergenic | 25.0% |
| ! | CTAAAGATTAAATCATTGAC+GGG | - | chr7.2:29349956-29349975 | MS.gene27660:intron | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | - | chr7.2:29348020-29348039 | MS.gene27660:CDS | 25.0% |
| ! | GCTCAAATAAGTTAATAAAC+AGG | + | chr7.2:29349056-29349075 | None:intergenic | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | + | chr7.2:29349779-29349798 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | + | chr7.2:29348494-29348513 | None:intergenic | 25.0% |
| ! | TAGCATATAAGAAAAACAGT+TGG | - | chr7.2:29349207-29349226 | MS.gene27660:intron | 25.0% |
| ! | TTCAAAAATGGGTAAAGTAA+AGG | + | chr7.2:29348087-29348106 | None:intergenic | 25.0% |
| ! | TTCTTTGGATATCTTGTTAA+TGG | - | chr7.2:29347233-29347252 | MS.gene27660:CDS | 25.0% |
| ! | TTGTGATAGTAAATTTACCA+TGG | + | chr7.2:29349712-29349731 | None:intergenic | 25.0% |
| !! | AGATTTCATGTTTTTCTTCT+TGG | - | chr7.2:29349308-29349327 | MS.gene27660:intron | 25.0% |
| !! | GAAAAACATGAAATCTGTTT+TGG | + | chr7.2:29349304-29349323 | None:intergenic | 25.0% |
| !! | GGTTTTTCTTGAATTCATTT+TGG | - | chr7.2:29347292-29347311 | MS.gene27660:CDS | 25.0% |
| !! | GTGGATTACAAAAAAAATAG+CGG | + | chr7.2:29348405-29348424 | None:intergenic | 25.0% |
| !! | TGATTAATTTGAATGACTGT+TGG | - | chr7.2:29348989-29349008 | MS.gene27660:intron | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | - | chr7.2:29349623-29349642 | MS.gene27660:intron | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | - | chr7.2:29348168-29348187 | MS.gene27660:CDS | 25.0% |
| !! | TTTTTATGGATTTAATCCTC+TGG | - | chr7.2:29347539-29347558 | MS.gene27660:intron | 25.0% |
| !!! | AGTTTTTTCCAATGGTAATT+CGG | - | chr7.2:29349904-29349923 | MS.gene27660:intron | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | - | chr7.2:29348098-29348117 | MS.gene27660:intron | 25.0% |
| !!! | GAATTGAAAGTTTTTTCCAA+TGG | - | chr7.2:29349896-29349915 | MS.gene27660:intron | 25.0% |
| !!! | TCACTTTTATTTTCCATTGA+AGG | + | chr7.2:29347782-29347801 | None:intergenic | 25.0% |
| !!! | TTTACTTTACCCATTTTTGA+AGG | - | chr7.2:29348086-29348105 | MS.gene27660:intron | 25.0% |
| AAAATGGGTAAAGTAAAGGT+AGG | + | chr7.2:29348083-29348102 | None:intergenic | 30.0% | |
| AAACCATTAACAGAACAACA+TGG | - | chr7.2:29350315-29350334 | MS.gene27660:intron | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | - | chr7.2:29348432-29348451 | MS.gene27660:intron | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | - | chr7.2:29350316-29350335 | MS.gene27660:intron | 30.0% | |
| ATATTGTGAAATAGTGGCTA+TGG | - | chr7.2:29348351-29348370 | MS.gene27660:intron | 30.0% | |
| ATCAATTGAGTTTAACCACT+TGG | - | chr7.2:29350030-29350049 | MS.gene27660:intron | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | - | chr7.2:29348194-29348213 | MS.gene27660:CDS | 30.0% | |
| ATTAATCCGAATTCAAACAC+TGG | + | chr7.2:29347636-29347655 | None:intergenic | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | + | chr7.2:29349741-29349760 | None:intergenic | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | + | chr7.2:29347882-29347901 | None:intergenic | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | + | chr7.2:29348547-29348566 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | - | chr7.2:29349739-29349758 | MS.gene27660:CDS | 30.0% | |
| GAAACTTTCAATTAACCAAG+TGG | + | chr7.2:29350048-29350067 | None:intergenic | 30.0% | |
| GATTTAAACATAATCTGTGC+AGG | + | chr7.2:29348015-29348034 | None:intergenic | 30.0% | |
| GCAGATATATACTCATGTAT+TGG | + | chr7.2:29348727-29348746 | None:intergenic | 30.0% | |
| GGTACTTCACATTTATTCAA+GGG | - | chr7.2:29347848-29347867 | MS.gene27660:intron | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | - | chr7.2:29348735-29348754 | MS.gene27660:intron | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | + | chr7.2:29349846-29349865 | None:intergenic | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | + | chr7.2:29348433-29348452 | None:intergenic | 30.0% | |
| TGGTACTTCACATTTATTCA+AGG | - | chr7.2:29347847-29347866 | MS.gene27660:intron | 30.0% | |
| TTCAGGAATATGTGTATAAC+AGG | - | chr7.2:29347695-29347714 | MS.gene27660:intron | 30.0% | |
| TTCATGTTCACAGGTAAATT+TGG | - | chr7.2:29349501-29349520 | MS.gene27660:intron | 30.0% | |
| TTTGAGAGAGCTTATAGAAA+CGG | - | chr7.2:29349107-29349126 | MS.gene27660:intron | 30.0% | |
| ! | TGTATAACAGGCTTCATTTT+AGG | - | chr7.2:29347707-29347726 | MS.gene27660:intron | 30.0% |
| ! | TTCTCATTTGTGTGATTTTC+AGG | - | chr7.2:29347678-29347697 | MS.gene27660:intron | 30.0% |
| ! | TTGGTTATGGATTCTTTTCT+TGG | - | chr7.2:29348844-29348863 | MS.gene27660:CDS | 30.0% |
| ! | TTTCTTTCTTGTTTCAGCTA+TGG | - | chr7.2:29347823-29347842 | MS.gene27660:intron | 30.0% |
| !! | CTGTTTCTGATTTACCTTAA+TGG | - | chr7.2:29347880-29347899 | MS.gene27660:intron | 30.0% |
| !! | GTTGCTAATTCAACTTTTTC+TGG | - | chr7.2:29349338-29349357 | MS.gene27660:intron | 30.0% |
| !!! | CTTTTTTTCAGTTACCTTTG+TGG | + | chr7.2:29348037-29348056 | None:intergenic | 30.0% |
| AAGCTTTCTGCTGTACTAAT+GGG | - | chr7.2:29347946-29347965 | MS.gene27660:intron | 35.0% | |
| AATGAGAAATTGTTGCCATC+TGG | + | chr7.2:29347198-29347217 | None:intergenic | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | + | chr7.2:29348805-29348824 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | - | chr7.2:29350257-29350276 | MS.gene27660:intron | 35.0% | |
| ACTAATACACCATACACGTA+GGG | + | chr7.2:29349612-29349631 | None:intergenic | 35.0% | |
| ACTATATCAGAGGACAATAG+TGG | - | chr7.2:29348442-29348461 | MS.gene27660:intron | 35.0% | |
| ATGAGAAATTGTTGCCATCT+GGG | + | chr7.2:29347197-29347216 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | - | chr7.2:29347206-29347225 | MS.gene27660:CDS | 35.0% | |
| CAGGAGAATTATTCAAAGCA+TGG | - | chr7.2:29349476-29349495 | MS.gene27660:intron | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | - | chr7.2:29349636-29349655 | MS.gene27660:CDS | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | + | chr7.2:29348473-29348492 | None:intergenic | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | + | chr7.2:29349703-29349722 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | + | chr7.2:29349766-29349785 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | + | chr7.2:29349613-29349632 | None:intergenic | 35.0% | |
| TAGGTGAAGAAGATGATGAA+AGG | - | chr7.2:29350493-29350512 | MS.gene27660:CDS | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | - | chr7.2:29348799-29348818 | MS.gene27660:CDS | 35.0% | |
| TCTCTAATCACGGAAAATAG+TGG | - | chr7.2:29348204-29348223 | MS.gene27660:CDS | 35.0% | |
| TCTTGTTAATGGTATCTGTG+AGG | - | chr7.2:29347244-29347263 | MS.gene27660:CDS | 35.0% | |
| TTCGGTTAGGAGATAAAAGT+CGG | - | chr7.2:29347593-29347612 | MS.gene27660:intron | 35.0% | |
| TTCTAGCCAGTGTTTGAATT+CGG | - | chr7.2:29347627-29347646 | MS.gene27660:intron | 35.0% | |
| TTGTGTCTTTGTGTGTAGAA+GGG | - | chr7.2:29347408-29347427 | MS.gene27660:intron | 35.0% | |
| TTTGTGTCTTTGTGTGTAGA+AGG | - | chr7.2:29347407-29347426 | MS.gene27660:intron | 35.0% | |
| ! | AATTCTCCTGTAAAAAGCAC+AGG | + | chr7.2:29349466-29349485 | None:intergenic | 35.0% |
| ! | ACTACTGTTGATGAAGAGTT+GGG | - | chr7.2:29350453-29350472 | MS.gene27660:CDS | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | + | chr7.2:29347931-29347950 | None:intergenic | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | - | chr7.2:29348128-29348147 | MS.gene27660:intron | 35.0% |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | + | chr7.2:29350403-29350422 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | + | chr7.2:29350408-29350427 | None:intergenic | 35.0% |
| ! | GACACAGTGTTGTTAAATAG+CGG | - | chr7.2:29348270-29348289 | MS.gene27660:intron | 35.0% |
| ! | GCTTCACATAAGTTTTCCAT+GGG | + | chr7.2:29347930-29347949 | None:intergenic | 35.0% |
| ! | TACATGCTCTCTTCTCTTTT+TGG | - | chr7.2:29347271-29347290 | MS.gene27660:CDS | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | - | chr7.2:29350452-29350471 | MS.gene27660:CDS | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | - | chr7.2:29348122-29348141 | MS.gene27660:intron | 35.0% |
| ! | TTTCTTGTTTCAGCTATGGT+TGG | - | chr7.2:29347827-29347846 | MS.gene27660:intron | 35.0% |
| !! | ATGTTTTAGACACTGTGTCA+TGG | - | chr7.2:29348558-29348577 | MS.gene27660:intron | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | + | chr7.2:29350418-29350437 | None:intergenic | 35.0% |
| !! | GTTGGTGTTGTTATGATAAC+CGG | - | chr7.2:29348817-29348836 | MS.gene27660:CDS | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | - | chr7.2:29348103-29348122 | MS.gene27660:intron | 35.0% |
| !!! | GATTTAATCCTCTGGTTTTC+GGG | - | chr7.2:29347547-29347566 | MS.gene27660:intron | 35.0% |
| !!! | GGATTTAATCCTCTGGTTTT+CGG | - | chr7.2:29347546-29347565 | MS.gene27660:intron | 35.0% |
| !!! | TACTGGTTTTTAGCCTTCAA+TGG | - | chr7.2:29347766-29347785 | MS.gene27660:intron | 35.0% |
| AGAATCCATAACCAAAGCAC+CGG | + | chr7.2:29348839-29348858 | None:intergenic | 40.0% | |
| AGCACCAAAAAGGGCAATTA+GGG | + | chr7.2:29349679-29349698 | None:intergenic | 40.0% | |
| AGTCAGACTTCACTTACCTT+TGG | + | chr7.2:29349938-29349957 | None:intergenic | 40.0% | |
| CAGAGATGATTAGGAAGTGA+TGG | + | chr7.2:29348928-29348947 | None:intergenic | 40.0% | |
| CATCTTCAATGTGATTCCCA+TGG | + | chr7.2:29350361-29350380 | None:intergenic | 40.0% | |
| CTCAAACTCCGAATTACCAT+TGG | + | chr7.2:29349915-29349934 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | + | chr7.2:29350321-29350340 | None:intergenic | 40.0% | |
| GAAGAGTTGGGAACATTTCA+TGG | - | chr7.2:29350465-29350484 | MS.gene27660:CDS | 40.0% | |
| GAAGCTTTCTGCTGTACTAA+TGG | - | chr7.2:29347945-29347964 | MS.gene27660:intron | 40.0% | |
| GCTTGCTTGTGAAACCATTA+AGG | + | chr7.2:29347897-29347916 | None:intergenic | 40.0% | |
| GGACTAATACTCATAGCCAT+GGG | - | chr7.2:29350342-29350361 | MS.gene27660:intron | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | - | chr7.2:29347967-29347986 | MS.gene27660:CDS | 40.0% | |
| GTGAAGAAGATGATGAAAGG+AGG | - | chr7.2:29350496-29350515 | MS.gene27660:CDS | 40.0% | |
| GTTCTGCCAGTGATGATAAT+GGG | - | chr7.2:29348670-29348689 | MS.gene27660:intron | 40.0% | |
| TAATTCGGAGTTTGAGCCAA+AGG | - | chr7.2:29349919-29349938 | MS.gene27660:intron | 40.0% | |
| TAGAAACGGCTTATGACATG+TGG | - | chr7.2:29349121-29349140 | MS.gene27660:intron | 40.0% | |
| TATGAATCCTGATACCACAC+AGG | - | chr7.2:29348891-29348910 | MS.gene27660:CDS | 40.0% | |
| TCGGTTAGGAGATAAAAGTC+GGG | - | chr7.2:29347594-29347613 | MS.gene27660:intron | 40.0% | |
| TCTTCTCAGACCAGGAATAA+AGG | + | chr7.2:29348698-29348717 | None:intergenic | 40.0% | |
| TGGAAAATTGATCACCTGTG+TGG | + | chr7.2:29348908-29348927 | None:intergenic | 40.0% | |
| TGGACTAATACTCATAGCCA+TGG | - | chr7.2:29350341-29350360 | MS.gene27660:intron | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | - | chr7.2:29347975-29347994 | MS.gene27660:CDS | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | - | chr7.2:29347900-29347919 | MS.gene27660:intron | 40.0% | |
| TGTGTCTTTGTGTGTAGAAG+GGG | - | chr7.2:29347409-29347428 | MS.gene27660:intron | 40.0% | |
| TGTTATGATAACCGGTGCTT+TGG | - | chr7.2:29348825-29348844 | MS.gene27660:CDS | 40.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | - | chr7.2:29347218-29347237 | MS.gene27660:CDS | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | - | chr7.2:29350321-29350340 | MS.gene27660:intron | 40.0% | |
| ! | ACACTGGCTAGAACAATCAT+TGG | + | chr7.2:29347620-29347639 | None:intergenic | 40.0% |
| ! | GGAACATTTCATGGTTCTGT+AGG | - | chr7.2:29350474-29350493 | MS.gene27660:CDS | 40.0% |
| ! | GGATATTTTCTTCTCAGACC+AGG | + | chr7.2:29348706-29348725 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | - | chr7.2:29348742-29348761 | MS.gene27660:intron | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | - | chr7.2:29347580-29347599 | MS.gene27660:intron | 40.0% |
| !! | ATAATGGGTGCCTTTATTCC+TGG | - | chr7.2:29348685-29348704 | MS.gene27660:intron | 40.0% |
| !! | GGAAAATGGCTCTGATAATC+TGG | - | chr7.2:29347568-29347587 | MS.gene27660:intron | 40.0% |
| !! | GTACAAAGTGTTGGCAATTG+TGG | + | chr7.2:29348424-29348443 | None:intergenic | 40.0% |
| !!! | CTGTTGGTCTCTAGTTTTGA+CGG | - | chr7.2:29349005-29349024 | MS.gene27660:intron | 40.0% |
| !!! | TGTTGGTCTCTAGTTTTGAC+GGG | - | chr7.2:29349006-29349025 | MS.gene27660:intron | 40.0% |
| AGCACAGGTGGGATTAAGAA+AGG | + | chr7.2:29349451-29349470 | None:intergenic | 45.0% | |
| AGCATGGACTTCATGTTCAC+AGG | - | chr7.2:29349492-29349511 | MS.gene27660:intron | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | + | chr7.2:29349674-29349693 | None:intergenic | 45.0% | |
| CAGCACCAAAAAGGGCAATT+AGG | + | chr7.2:29349680-29349699 | None:intergenic | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | - | chr7.2:29348587-29348606 | MS.gene27660:intron | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | - | chr7.2:29349421-29349440 | MS.gene27660:intron | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | - | chr7.2:29348831-29348850 | MS.gene27660:CDS | 45.0% | |
| GCTGTACTAATGGGATCACA+TGG | - | chr7.2:29347955-29347974 | MS.gene27660:intron | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | - | chr7.2:29347966-29347985 | MS.gene27660:CDS | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | - | chr7.2:29348669-29348688 | MS.gene27660:intron | 45.0% | |
| GTGCGTCTGCTAGTGTAAAT+AGG | + | chr7.2:29348774-29348793 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | + | chr7.2:29349688-29349707 | None:intergenic | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | + | chr7.2:29349662-29349681 | None:intergenic | 45.0% | |
| TTGATCACCTGTGTGGTATC+AGG | + | chr7.2:29348901-29348920 | None:intergenic | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | + | chr7.2:29348679-29348698 | None:intergenic | 45.0% |
| ! | AATCATTGACGGGTCGAACT+CGG | - | chr7.2:29349966-29349985 | MS.gene27660:intron | 45.0% |
| ! | CTCCTGTAAAAAGCACAGGT+GGG | + | chr7.2:29349462-29349481 | None:intergenic | 45.0% |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | - | chr7.2:29349672-29349691 | MS.gene27660:CDS | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | - | chr7.2:29347575-29347594 | MS.gene27660:intron | 45.0% |
| ! | GGGAAAGCACAGAGATGATT+AGG | + | chr7.2:29348937-29348956 | None:intergenic | 45.0% |
| ! | TCTCCTGTAAAAAGCACAGG+TGG | + | chr7.2:29349463-29349482 | None:intergenic | 45.0% |
| !! | ATCCCACCTGTGCTTTTTAC+AGG | - | chr7.2:29349457-29349476 | MS.gene27660:intron | 45.0% |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | - | chr7.2:29347152-29347171 | MS.gene27660:CDS | 45.0% |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | + | chr7.2:29350387-29350406 | None:intergenic | 45.0% |
| !!! | TCCTCTGGTTTTCGGGAAAA+TGG | - | chr7.2:29347554-29347573 | MS.gene27660:intron | 45.0% |
| AAGGCTCTCTTAGGTATGGC+AGG | + | chr7.2:29350399-29350418 | None:intergenic | 50.0% | |
| AGATGATGAAAGGAGGCCCT+TGG | - | chr7.2:29350503-29350522 | MS.gene27660:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | + | chr7.2:29349601-29349620 | None:intergenic | 50.0% | |
| CACTCTCTGATAGACCCAGA+TGG | - | chr7.2:29347180-29347199 | MS.gene27660:CDS | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | + | chr7.2:29349689-29349708 | None:intergenic | 50.0% | |
| GCAAGCAAATGGTGAACCCA+TGG | - | chr7.2:29347911-29347930 | MS.gene27660:intron | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | + | chr7.2:29348245-29348264 | None:intergenic | 50.0% | |
| GCTATGGCACTGTTGCATAG+CGG | - | chr7.2:29348367-29348386 | MS.gene27660:intron | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | - | chr7.2:29349420-29349439 | MS.gene27660:intron | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | - | chr7.2:29349600-29349619 | MS.gene27660:intron | 50.0% | |
| !! | GCCATTTTCCCGAAAACCAG+AGG | + | chr7.2:29347558-29347577 | None:intergenic | 50.0% |
| GCTAATGCGTTGTAGTGCGG+TGG | + | chr7.2:29348242-29348261 | None:intergenic | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | - | chr7.2:29349692-29349711 | MS.gene27660:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 29347140 | 29350530 | 29347140 | ID=MS.gene27660 |
| chr7.2 | mRNA | 29347140 | 29350530 | 29347140 | ID=MS.gene27660.t1;Parent=MS.gene27660 |
| chr7.2 | exon | 29350405 | 29350530 | 29350405 | ID=MS.gene27660.t1.exon1;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29350405 | 29350530 | 29350405 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29349942 | 29349970 | 29349942 | ID=MS.gene27660.t1.exon2;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29349942 | 29349970 | 29349942 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29349629 | 29349830 | 29349629 | ID=MS.gene27660.t1.exon3;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29349629 | 29349830 | 29349629 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29348758 | 29349000 | 29348758 | ID=MS.gene27660.t1.exon4;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29348758 | 29349000 | 29348758 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29348157 | 29348258 | 29348157 | ID=MS.gene27660.t1.exon5;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29348157 | 29348258 | 29348157 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29347957 | 29348064 | 29347957 | ID=MS.gene27660.t1.exon6;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29347957 | 29348064 | 29347957 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| chr7.2 | exon | 29347140 | 29347409 | 29347140 | ID=MS.gene27660.t1.exon7;Parent=MS.gene27660.t1 |
| chr7.2 | CDS | 29347140 | 29347409 | 29347140 | ID=cds.MS.gene27660.t1;Parent=MS.gene27660.t1 |
| Gene Sequence |
| Protein sequence |
