AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023939

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023939.t1 MTR_7g078330 96.909 647 19 1 1 647 1 646 0.0 1276
MS.gene023939.t1 MTR_4g063800 42.258 620 340 4 39 643 12 628 7.19e-168 495
MS.gene023939.t1 MTR_1g094215 42.029 621 348 4 30 645 9 622 7.47e-148 442
MS.gene023939.t1 MTR_7g059405 38.736 617 355 7 43 641 21 632 3.38e-127 389
MS.gene023939.t1 MTR_4g485520 38.915 627 335 12 54 647 41 652 1.66e-121 375
MS.gene023939.t1 MTR_1g094215 45.598 443 232 3 208 645 1 439 4.54e-114 349
MS.gene023939.t1 MTR_4g485520 47.792 385 190 3 272 647 102 484 2.24e-112 346
MS.gene023939.t1 MTR_5g083030 32.180 665 377 12 43 643 31 685 4.65e-94 305
MS.gene023939.t1 MTR_2g018010 34.873 628 369 17 53 645 55 677 1.43e-89 294
MS.gene023939.t1 MTR_7g053260 35.526 380 234 8 272 643 75 451 9.38e-66 223
MS.gene023939.t1 MTR_3g466220 48.921 278 141 1 365 642 529 805 2.18e-63 224
MS.gene023939.t1 MTR_3g466220 35.928 167 89 3 187 349 134 286 6.24e-25 110
MS.gene023939.t1 MTR_3g466220 48.921 278 141 1 365 642 550 826 3.13e-63 224
MS.gene023939.t1 MTR_3g466220 35.928 167 89 3 187 349 155 307 5.62e-25 110
MS.gene023939.t1 MTR_3g103050 39.286 308 168 3 355 643 23 330 1.72e-62 211
MS.gene023939.t1 MTR_1g069845 46.468 269 143 1 371 639 326 593 6.37e-62 217
MS.gene023939.t1 MTR_1g069845 26.598 485 272 12 203 639 62 510 6.52e-34 137
MS.gene023939.t1 MTR_1g018180 40.138 289 170 2 362 647 54 342 8.36e-62 209
MS.gene023939.t1 MTR_1g069845 46.642 268 142 1 371 638 443 709 3.65e-61 217
MS.gene023939.t1 MTR_1g069845 24.848 660 389 17 39 638 14 626 2.50e-36 145
MS.gene023939.t1 MTR_1g069845 46.642 268 142 1 371 638 447 713 4.11e-61 217
MS.gene023939.t1 MTR_1g069845 24.848 660 389 17 39 638 18 630 3.47e-36 145
MS.gene023939.t1 MTR_7g116600 34.383 381 238 7 276 647 79 456 4.44e-60 208
MS.gene023939.t1 MTR_4g028960 31.111 585 364 13 86 643 93 665 9.32e-60 213
MS.gene023939.t1 MTR_3g078160 26.935 620 416 14 52 642 46 657 4.12e-58 208
MS.gene023939.t1 MTR_3g078160 26.935 620 416 14 52 642 46 657 4.79e-58 207
MS.gene023939.t1 MTR_7g097020 44.068 295 156 2 352 638 458 751 1.44e-57 207
MS.gene023939.t1 MTR_7g097020 27.759 299 196 7 54 350 36 316 7.44e-22 100
MS.gene023939.t1 MTR_4g107010 26.527 622 417 14 52 642 52 664 5.27e-55 200
MS.gene023939.t1 MTR_2g026130 39.373 287 174 0 360 646 167 453 1.62e-53 190
MS.gene023939.t1 MTR_3g078160 28.457 499 325 11 52 526 46 536 4.21e-49 180
MS.gene023939.t1 MTR_8g080280 26.354 683 387 17 67 643 38 710 1.01e-47 179
MS.gene023939.t1 MTR_1g079450 33.333 378 239 7 272 639 60 434 1.26e-46 171
MS.gene023939.t1 MTR_3g085610 25.830 693 383 19 67 646 37 711 2.27e-45 172
MS.gene023939.t1 MTR_5g034440 26.772 635 408 15 46 641 48 664 5.06e-43 165
MS.gene023939.t1 MTR_2g011140 29.032 372 249 8 281 646 21 383 2.12e-34 135
MS.gene023939.t1 MTR_4g091880 30.263 380 236 10 275 642 5 367 2.27e-33 132
MS.gene023939.t1 MTR_4g091880 28.686 373 223 12 275 642 5 339 8.86e-32 127
MS.gene023939.t1 MTR_4g085720 31.443 388 239 11 275 644 14 392 3.01e-30 124
MS.gene023939.t1 MTR_8g077205 29.080 337 176 11 60 350 31 350 1.18e-27 119
MS.gene023939.t1 MTR_1g093965 31.174 247 122 5 288 534 1 199 1.26e-27 110
MS.gene023939.t1 MTR_1g093965 38.679 106 45 1 485 570 90 195 4.65e-15 74.7
MS.gene023939.t1 MTR_5g069340 33.451 284 184 4 366 644 32 315 1.99e-27 114
MS.gene023939.t1 MTR_5g048050 27.569 399 254 14 273 641 23 416 7.20e-27 114
MS.gene023939.t1 MTR_3g065080 25.217 345 229 8 241 568 9 341 1.26e-26 113
MS.gene023939.t1 MTR_3g106140 31.507 292 186 6 363 642 105 394 1.69e-26 114
MS.gene023939.t1 MTR_1g093995 30.769 247 123 5 288 534 1 199 2.66e-26 107
MS.gene023939.t1 MTR_1g093995 38.679 106 45 1 485 570 90 195 4.83e-15 74.7
MS.gene023939.t1 MTR_5g015210 26.178 382 239 8 275 636 67 425 5.14e-26 112
MS.gene023939.t1 MTR_5g077510 23.858 394 267 13 273 641 33 418 1.16e-25 110
MS.gene023939.t1 MTR_6g071340 26.448 397 261 11 273 641 3 396 1.18e-25 110
MS.gene023939.t1 MTR_7g106340 31.098 328 179 13 275 568 8 322 1.17e-24 107
MS.gene023939.t1 MTR_3g078340 29.310 290 188 6 361 642 206 486 1.83e-24 108
MS.gene023939.t1 MTR_1g056880 27.163 416 245 15 279 644 11 418 1.69e-23 104
MS.gene023939.t1 MTR_1g056840 28.571 308 169 10 279 542 11 311 4.20e-23 102
MS.gene023939.t1 MTR_6g008170 29.020 255 170 3 390 638 260 509 5.16e-23 103
MS.gene023939.t1 MTR_1g056870 27.208 419 241 17 279 644 11 418 5.75e-23 102
MS.gene023939.t1 MTR_1g017770 25.330 379 251 8 275 636 45 408 9.32e-23 102
MS.gene023939.t1 MTR_1g014420 29.779 272 177 6 383 642 144 413 3.31e-22 101
MS.gene023939.t1 MTR_8g077205 31.527 203 97 6 184 350 42 238 4.86e-22 101
MS.gene023939.t1 MTR_3g096370 27.321 377 226 12 271 615 6 366 1.22e-21 98.2
MS.gene023939.t1 MTR_7g117890 24.838 463 303 12 90 540 76 505 2.63e-20 96.3
MS.gene023939.t1 MTR_3g115670 26.409 337 173 8 275 537 30 365 6.45e-20 94.7
MS.gene023939.t1 MTR_3g095730 25.429 350 233 12 273 600 11 354 7.95e-20 92.8
MS.gene023939.t1 MTR_5g020570 38.393 112 60 1 267 378 265 367 1.59e-19 93.6
MS.gene023939.t1 MTR_5g020570 38.393 112 60 1 267 378 280 382 2.28e-19 93.2
MS.gene023939.t1 MTR_2g007630 33.061 245 111 8 288 530 1 194 2.61e-19 88.6
MS.gene023939.t1 MTR_1g056910 37.226 137 77 5 275 408 6 136 3.57e-19 90.9
MS.gene023939.t1 MTR_2g087350 29.643 280 180 9 275 542 6 280 1.26e-18 89.0
MS.gene023939.t1 MTR_8g092870 25.762 361 234 11 266 600 1 353 2.47e-18 88.2
MS.gene023939.t1 MTR_5g079550 30.797 276 176 6 379 645 31 300 2.64e-18 87.8
MS.gene023939.t1 MTR_8g027140 24.689 482 320 14 99 545 82 555 4.33e-18 89.4
MS.gene023939.t1 MTR_8g039560 26.389 288 194 7 364 634 4 290 5.01e-18 86.3
MS.gene023939.t1 MTR_8g103227 34.868 152 90 4 224 374 352 495 8.61e-18 88.6
MS.gene023939.t1 MTR_6g004790 27.891 294 190 8 371 647 5 293 1.86e-15 78.6
MS.gene023939.t1 MTR_1g094025 36.752 117 51 1 442 558 186 279 4.44e-15 76.6
MS.gene023939.t1 MTR_1g100820 44.318 88 44 1 254 341 632 714 4.62e-15 79.3
MS.gene023939.t1 MTR_1g100820 44.318 88 44 1 254 341 630 712 4.86e-15 79.3
MS.gene023939.t1 MTR_4g051515 35.616 146 87 4 275 417 6 147 6.96e-15 77.8
MS.gene023939.t1 MTR_5g032010 35.455 110 68 1 232 341 692 798 3.17e-14 76.6
MS.gene023939.t1 MTR_8g032570 27.698 278 194 7 371 645 201 474 4.34e-14 75.9
MS.gene023939.t1 MTR_8g032570 27.698 278 194 7 371 645 224 497 4.87e-14 75.9
MS.gene023939.t1 MTR_1g090320 46.479 71 37 1 276 345 514 584 6.72e-14 75.9
MS.gene023939.t1 MTR_1g090320 46.479 71 37 1 276 345 516 586 6.96e-14 75.9
MS.gene023939.t1 MTR_7g076220 27.574 272 189 6 379 647 167 433 2.57e-13 73.6
MS.gene023939.t1 MTR_7g077780 44.286 70 39 0 276 345 827 896 5.42e-13 72.8
MS.gene023939.t1 MTR_7g005940 42.169 83 44 2 263 341 580 662 6.71e-13 72.8
MS.gene023939.t1 MTR_7g005940 42.169 83 44 2 263 341 580 662 6.74e-13 72.8
MS.gene023939.t1 MTR_4g125930 42.169 83 46 2 259 341 476 556 7.68e-13 72.0
MS.gene023939.t1 MTR_4g125930 42.169 83 46 2 259 341 676 756 9.66e-13 72.0
MS.gene023939.t1 MTR_2g096850 47.761 67 35 0 275 341 740 806 3.25e-12 70.1
MS.gene023939.t1 MTR_2g096850 47.761 67 35 0 275 341 589 655 3.37e-12 70.1
MS.gene023939.t1 MTR_3g067685 29.960 247 134 7 399 644 112 320 3.44e-12 68.9
MS.gene023939.t1 MTR_3g096370 26.298 289 152 10 271 532 6 260 4.08e-12 67.8
MS.gene023939.t1 MTR_3g008270 39.394 99 42 4 258 341 700 795 5.00e-12 69.7
MS.gene023939.t1 MTR_7g007780 30.345 145 98 1 398 539 589 733 5.68e-12 69.7
MS.gene023939.t1 MTR_3g008280 45.455 66 35 1 276 341 732 796 8.93e-12 68.9
MS.gene023939.t1 MTR_3g008280 45.455 66 35 1 276 341 740 804 9.13e-12 68.9
MS.gene023939.t1 MTR_1g076400 24.189 339 221 7 234 540 220 554 2.07e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023939.t1 AT5G42340 61.389 619 225 4 32 647 53 660 0.0 730
MS.gene023939.t1 AT3G46510 43.994 616 333 4 39 643 15 629 4.48e-169 498
MS.gene023939.t1 AT3G54850 39.389 622 355 5 33 647 20 626 8.64e-144 432
MS.gene023939.t1 AT2G28830 42.096 563 304 9 102 643 1 562 8.02e-136 410
MS.gene023939.t1 AT1G23030 37.500 624 369 9 29 646 4 612 3.70e-120 370
MS.gene023939.t1 AT1G71020 36.713 651 350 13 28 646 3 623 7.38e-113 352
MS.gene023939.t1 AT1G71020 44.703 387 205 3 269 646 89 475 4.45e-102 319
MS.gene023939.t1 AT1G29340 34.083 578 349 15 97 645 115 689 5.35e-79 266
MS.gene023939.t1 AT3G07360 37.435 382 223 9 276 644 75 453 1.95e-72 241
MS.gene023939.t1 AT2G23140 46.975 281 148 1 362 642 348 627 4.22e-67 231
MS.gene023939.t1 AT2G23140 51.220 82 40 0 269 350 35 116 1.37e-23 106
MS.gene023939.t1 AT2G23140 46.975 281 148 1 362 642 348 627 4.22e-67 231
MS.gene023939.t1 AT2G23140 51.220 82 40 0 269 350 35 116 1.37e-23 106
MS.gene023939.t1 AT2G23140 46.975 281 148 1 362 642 537 816 4.89e-66 232
MS.gene023939.t1 AT2G23140 51.220 82 40 0 269 350 224 305 1.62e-23 106
MS.gene023939.t1 AT2G23140 46.975 281 148 1 362 642 537 816 4.89e-66 232
MS.gene023939.t1 AT2G23140 51.220 82 40 0 269 350 224 305 1.62e-23 106
MS.gene023939.t1 AT2G23140 46.975 281 148 1 362 642 540 819 6.79e-66 232
MS.gene023939.t1 AT2G23140 51.220 82 40 0 269 350 227 308 1.71e-23 106
MS.gene023939.t1 AT5G01830 29.623 557 364 11 100 643 104 645 3.54e-62 219
MS.gene023939.t1 AT3G01400 39.583 288 172 2 362 647 57 344 8.53e-60 204
MS.gene023939.t1 AT5G67340 41.042 307 177 4 343 646 396 701 1.68e-58 209
MS.gene023939.t1 AT5G67340 27.649 387 246 9 275 640 240 613 2.46e-33 136
MS.gene023939.t1 AT5G67340 41.042 307 177 4 343 646 396 701 1.68e-58 209
MS.gene023939.t1 AT5G67340 27.649 387 246 9 275 640 240 613 2.46e-33 136
MS.gene023939.t1 AT3G54790 46.468 269 142 2 371 638 441 708 3.32e-56 203
MS.gene023939.t1 AT3G54790 33.146 178 97 4 186 358 123 283 5.24e-20 95.1
MS.gene023939.t1 AT3G54790 46.468 269 142 2 371 638 477 744 5.30e-56 203
MS.gene023939.t1 AT3G54790 33.146 178 97 4 186 358 159 319 5.66e-20 95.1
MS.gene023939.t1 AT3G54790 46.468 269 142 2 371 638 477 744 5.30e-56 203
MS.gene023939.t1 AT3G54790 33.146 178 97 4 186 358 159 319 5.66e-20 95.1
MS.gene023939.t1 AT1G27910 28.116 690 376 17 63 646 32 707 1.50e-55 202
MS.gene023939.t1 AT5G58680 39.033 269 163 1 376 643 71 339 1.09e-54 191
MS.gene023939.t1 AT4G16490 37.193 285 177 1 360 642 177 461 4.06e-47 173
MS.gene023939.t1 AT1G60190 28.183 589 388 17 80 641 82 662 2.58e-46 174
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT3G07360 34.579 321 194 9 337 644 1 318 2.19e-45 164
MS.gene023939.t1 AT5G18320 31.854 383 241 9 275 643 72 448 3.56e-45 167
MS.gene023939.t1 AT1G24330 25.404 681 392 17 67 642 36 705 2.97e-44 169
MS.gene023939.t1 AT1G24330 25.404 681 392 17 67 642 36 705 2.97e-44 169
MS.gene023939.t1 AT1G67530 25.470 691 388 19 67 646 36 710 1.65e-41 161
MS.gene023939.t1 AT1G67530 25.470 691 388 19 67 646 36 710 1.65e-41 161
MS.gene023939.t1 AT1G67530 25.470 691 388 19 67 646 36 710 1.65e-41 161
MS.gene023939.t1 AT4G21350 33.243 367 235 7 275 638 5 364 1.32e-40 152
MS.gene023939.t1 AT1G10560 26.125 578 384 15 100 641 103 673 3.70e-40 157
MS.gene023939.t1 AT3G19380 30.570 386 239 10 262 625 1 379 1.76e-37 145
MS.gene023939.t1 AT1G49780 29.512 410 253 10 262 644 1 401 3.33e-35 138
MS.gene023939.t1 AT1G67530 30.149 335 184 8 67 366 36 355 8.22e-35 139
MS.gene023939.t1 AT5G18330 28.212 397 241 13 275 643 65 445 1.30e-30 125
MS.gene023939.t1 AT5G18340 30.931 333 206 12 270 585 69 394 1.43e-28 119
MS.gene023939.t1 AT5G62560 31.890 254 166 3 390 638 258 509 2.67e-27 117
MS.gene023939.t1 AT5G40140 29.964 277 186 4 371 642 233 506 2.37e-26 114
MS.gene023939.t1 AT5G65920 27.346 373 246 9 275 636 60 418 1.65e-25 110
MS.gene023939.t1 AT5G65920 27.346 373 246 9 275 636 60 418 1.65e-25 110
MS.gene023939.t1 AT1G66160 27.848 395 242 15 273 643 31 406 3.54e-25 109
MS.gene023939.t1 AT5G65200 29.492 295 192 5 359 642 220 509 2.88e-24 107
MS.gene023939.t1 AT2G35930 27.597 308 202 10 275 567 12 313 1.04e-23 104
MS.gene023939.t1 AT4G31890 30.741 270 170 7 386 642 163 428 1.55e-23 105
MS.gene023939.t1 AT4G31890 30.741 270 170 7 386 642 163 428 1.55e-23 105
MS.gene023939.t1 AT4G31890 30.741 270 170 7 386 642 163 428 1.55e-23 105
MS.gene023939.t1 AT5G37490 25.127 394 259 13 273 641 29 411 1.25e-21 98.6
MS.gene023939.t1 AT4G12710 31.884 276 177 8 379 644 58 332 3.24e-21 97.1
MS.gene023939.t1 AT3G49810 25.203 369 259 7 275 636 64 422 4.36e-21 97.1
MS.gene023939.t1 AT1G76390 28.571 315 189 8 275 555 25 337 6.31e-21 98.2
MS.gene023939.t1 AT1G76390 28.571 315 189 8 275 555 25 337 6.31e-21 98.2
MS.gene023939.t1 AT3G52450 41.860 129 68 4 275 401 7 130 1.25e-20 95.5
MS.gene023939.t1 AT1G20780 28.750 320 182 10 275 555 23 335 1.81e-20 96.7
MS.gene023939.t1 AT1G20780 28.750 320 182 10 275 555 23 335 1.81e-20 96.7
MS.gene023939.t1 AT1G20780 28.750 320 182 10 275 555 23 335 1.81e-20 96.7
MS.gene023939.t1 AT3G47820 33.480 227 141 4 424 642 263 487 3.43e-20 95.1
MS.gene023939.t1 AT5G09800 24.638 345 230 10 275 600 11 344 2.35e-19 91.3
MS.gene023939.t1 AT3G18710 27.077 325 204 13 267 568 1 315 3.73e-19 90.9
MS.gene023939.t1 AT2G25130 28.464 267 173 7 390 642 133 395 6.02e-19 90.9
MS.gene023939.t1 AT4G36550 26.207 290 188 7 60 347 26 291 8.54e-19 91.3
MS.gene023939.t1 AT5G14510 31.930 285 179 9 366 642 2 279 2.03e-18 87.4
MS.gene023939.t1 AT5G64660 25.172 290 178 8 273 556 8 264 1.31e-17 86.3
MS.gene023939.t1 AT1G08315 24.667 300 205 9 362 641 3 301 7.06e-17 82.8
MS.gene023939.t1 AT3G03440 29.213 267 180 4 386 645 84 348 1.15e-16 83.2
MS.gene023939.t1 AT2G45920 50.000 66 33 0 276 341 326 391 3.15e-16 81.6
MS.gene023939.t1 AT1G01680 50.000 72 35 1 278 348 236 307 4.17e-16 80.1
MS.gene023939.t1 AT3G61390 50.000 66 33 0 276 341 279 344 3.14e-15 78.2
MS.gene023939.t1 AT3G61390 50.000 66 33 0 276 341 354 419 5.41e-15 78.2
MS.gene023939.t1 AT3G11840 51.389 72 33 2 275 345 10 80 8.02e-15 77.8
MS.gene023939.t1 AT1G56040 53.846 65 30 0 276 340 354 418 1.25e-14 77.0
MS.gene023939.t1 AT3G60350 34.307 137 87 1 406 539 599 735 2.06e-14 77.4
MS.gene023939.t1 AT3G60350 34.307 137 87 1 406 539 599 735 2.06e-14 77.4
MS.gene023939.t1 AT1G01660 34.058 138 66 3 222 346 444 569 2.56e-14 76.6
MS.gene023939.t1 AT1G01660 33.333 138 67 3 222 346 443 568 2.71e-14 76.6
MS.gene023939.t1 AT2G45910 44.304 79 44 0 267 345 755 833 2.77e-14 77.0
MS.gene023939.t1 AT2G45910 44.304 79 44 0 267 345 755 833 2.77e-14 77.0
MS.gene023939.t1 AT2G44900 32.432 148 96 2 396 539 597 744 6.44e-14 75.9
MS.gene023939.t1 AT2G44900 32.432 148 96 2 396 539 597 744 6.44e-14 75.9
MS.gene023939.t1 AT1G66160 24.557 395 239 16 273 643 31 390 1.03e-13 73.9
MS.gene023939.t1 AT5G65500 35.036 137 72 3 212 341 663 789 1.28e-13 74.7
MS.gene023939.t1 AT5G65500 35.036 137 72 3 212 341 655 781 1.37e-13 74.7
MS.gene023939.t1 AT1G56030 46.154 65 35 0 276 340 324 388 1.00e-12 70.9
MS.gene023939.t1 AT5G51270 42.857 70 39 1 276 345 736 804 1.70e-12 71.2
MS.gene023939.t1 AT5G51270 42.857 70 39 1 276 345 736 804 1.70e-12 71.2
MS.gene023939.t1 AT2G19410 42.308 78 44 1 264 341 700 776 4.53e-12 69.7
MS.gene023939.t1 AT5G57035 45.455 66 36 0 276 341 709 774 4.86e-12 69.7
MS.gene023939.t1 AT2G19410 40.476 84 49 1 264 347 714 796 5.08e-12 69.7
MS.gene023939.t1 AT2G19410 42.308 78 44 1 264 341 735 811 5.28e-12 69.7
MS.gene023939.t1 AT2G45720 26.296 270 191 4 379 646 162 425 1.63e-11 67.8
MS.gene023939.t1 AT2G45720 26.296 270 191 4 379 646 162 425 1.63e-11 67.8
MS.gene023939.t1 AT2G45720 26.296 270 191 4 379 646 162 425 1.63e-11 67.8
MS.gene023939.t1 AT2G45720 26.296 270 191 4 379 646 162 425 1.63e-11 67.8
MS.gene023939.t1 AT2G45720 26.296 270 191 4 379 646 162 425 1.63e-11 67.8
MS.gene023939.t1 AT5G61560 31.667 120 65 3 225 341 685 790 2.36e-11 67.4
MS.gene023939.t1 AT5G61560 31.667 120 65 3 225 341 685 790 2.36e-11 67.4
MS.gene023939.t1 AT3G49060 45.455 66 36 0 276 341 726 791 2.40e-11 67.4
MS.gene023939.t1 AT3G49060 45.455 66 36 0 276 341 736 801 2.42e-11 67.4
MS.gene023939.t1 AT5G61560 31.667 120 65 3 225 341 683 788 2.44e-11 67.4
MS.gene023939.t1 AT5G61560 31.667 120 65 3 225 341 704 809 2.47e-11 67.4
MS.gene023939.t1 AT5G61560 31.667 120 65 3 225 341 704 809 2.47e-11 67.4
MS.gene023939.t1 AT3G49060 45.455 66 36 0 276 341 703 768 2.62e-11 67.4
MS.gene023939.t1 AT5G50900 28.488 172 121 1 371 540 149 320 4.03e-11 66.6
MS.gene023939.t1 AT1G68940 25.641 234 148 6 266 491 288 503 4.52e-11 66.6
MS.gene023939.t1 AT1G68940 25.641 234 148 6 266 491 288 503 4.68e-11 66.6
MS.gene023939.t1 AT4G25160 41.026 78 43 2 264 341 757 831 4.69e-11 66.6
MS.gene023939.t1 AT1G68940 25.641 234 148 6 266 491 235 450 4.89e-11 66.6

Find 113 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAATTTCAAGTGTTAT+TGG 0.211508 7.4:+27890492 None:intergenic
CAAACACATGTTGCCTCTTA+TGG 0.212487 7.4:-27891987 MS.gene023939:CDS
CCAAACATGGAATTTCTTCT+TGG 0.230264 7.4:+27889748 None:intergenic
AGCTTTACTTCAATTGTTAA+AGG 0.235604 7.4:-27889238 MS.gene023939:CDS
GCTGCACATTCCTTATTCTT+TGG 0.276074 7.4:+27889084 None:intergenic
ATAATAGAAGTGTTGGAAAA+TGG 0.285128 7.4:-27889480 MS.gene023939:CDS
CCAAGAAGAAATTCCATGTT+TGG 0.295569 7.4:-27889748 MS.gene023939:CDS
TGTAATAAATTTACCAAAGC+TGG 0.326531 7.4:+27889363 None:intergenic
TTGGTAAATTTATTACAAAA+TGG 0.326549 7.4:-27889357 MS.gene023939:CDS
GCTTGGAAGAAGCACTTCTT+TGG 0.328604 7.4:-27890538 MS.gene023939:CDS
CTTCTTCCAAGCATCTTATT+AGG 0.336614 7.4:+27890549 None:intergenic
TTCCTCGAAACGGCGTTGTT+TGG 0.340973 7.4:-27891937 MS.gene023939:CDS
TTACAAAATGGAACAGTTAG+AGG 0.342439 7.4:-27889345 MS.gene023939:CDS
AGAAGGGACTCCAAAGAATA+AGG 0.346244 7.4:-27889094 MS.gene023939:CDS
CCAACCTCATGCCTCCCTTC+AGG 0.349557 7.4:+27889156 None:intergenic
TTCAGCAATTAAATTTCTTA+AGG 0.357358 7.4:+27889842 None:intergenic
CGAAGAAAAGCGCATCTCTA+AGG 0.359752 7.4:+27891906 None:intergenic
GGTGTGCCTTGTGATGAATT+AGG 0.367708 7.4:-27891587 MS.gene023939:CDS
GTCAAATGGGATTCCAGCTT+TGG 0.381074 7.4:-27889376 MS.gene023939:CDS
GTGTGCCTTGTGATGAATTA+GGG 0.381169 7.4:-27891586 MS.gene023939:CDS
TCCGAAGACAAGGCAGCCTT+TGG 0.394785 7.4:-27889892 MS.gene023939:CDS
ATTGAATCGGTGGTTCAATT+CGG 0.409503 7.4:-27892061 MS.gene023939:CDS
AACCAAACAACGCCGTTTCG+AGG 0.411594 7.4:+27891935 None:intergenic
AAATTTCTTAAGGCACAGTT+TGG 0.411871 7.4:+27889852 None:intergenic
TGGCCACTTGCAATAATAAC+AGG 0.415456 7.4:+27890465 None:intergenic
ACTTTGGCAGCACTTCAGTT+TGG 0.417472 7.4:-27889021 MS.gene023939:CDS
TCCAAAGGCTGCCTTGTCTT+CGG 0.419783 7.4:+27889891 None:intergenic
ACAACGCCGTTTCGAGGAAC+AGG 0.427957 7.4:+27891941 None:intergenic
GAGGTTGTAGGAGTGTCAAA+TGG 0.430268 7.4:-27889390 MS.gene023939:CDS
GATGAAAATAAAGAGGTTGT+AGG 0.431054 7.4:-27889402 MS.gene023939:CDS
TAGCTCTCTCTTTATTTGCA+TGG 0.433322 7.4:+27889280 None:intergenic
ATTGTTAAAGGACAGAAACT+TGG 0.435496 7.4:-27889226 MS.gene023939:CDS
GCCATGCCTAATAAGATGCT+TGG 0.439094 7.4:-27890555 MS.gene023939:CDS
TCCAACACTTCTATTATAGC+TGG 0.443786 7.4:+27889486 None:intergenic
CTTGTTGAGTTTACTAGAGA+AGG 0.448455 7.4:-27889111 MS.gene023939:CDS
TTCTGATGAAGTAAAAGAAC+AGG 0.452149 7.4:-27891561 MS.gene023939:intron
TAAGAAATTTAATTGCTGAA+TGG 0.452536 7.4:-27889839 MS.gene023939:CDS
CAATGGTGTGGTGGTGGTGG+AGG 0.458616 7.4:-27892098 MS.gene023939:CDS
ATGCAATGGTGTGGTGGTGG+TGG 0.460589 7.4:-27892101 MS.gene023939:CDS
AACCTTGTTAGAGAAAGAAA+AGG 0.469867 7.4:-27890678 MS.gene023939:CDS
CCACCGATTCAATGAGTCCT+TGG 0.474954 7.4:+27892071 None:intergenic
TCCAGCTATAATAGAAGTGT+TGG 0.478569 7.4:-27889487 MS.gene023939:CDS
GAAACGGCGTTGTTTGGTTG+AGG 0.484598 7.4:-27891931 MS.gene023939:CDS
CCTTTCGATAATGGCACTAT+CGG 0.487902 7.4:+27890764 None:intergenic
GAGGTAGAAACATTGGCTGT+TGG 0.489533 7.4:-27890702 MS.gene023939:CDS
AAAGAGAGAGCTATAAAAGC+TGG 0.489962 7.4:-27889270 MS.gene023939:CDS
AGGCTGCCTTGTCTTCGGAC+AGG 0.490475 7.4:+27889896 None:intergenic
TATGATAGGATTTGTACTAA+TGG 0.494085 7.4:+27889606 None:intergenic
AGCTAATGCACGTGCAACTC+AGG 0.495077 7.4:-27890872 MS.gene023939:CDS
TGTTATTATTGCAAGTGGCC+AGG 0.495390 7.4:-27890463 MS.gene023939:intron
TCCAAGCATCTTATTAGGCA+TGG 0.497480 7.4:+27890554 None:intergenic
AGGTTGTAGGAGTGTCAAAT+GGG 0.498394 7.4:-27889389 MS.gene023939:CDS
CTACTTGTGTTAACTCCTGA+AGG 0.498929 7.4:-27889171 MS.gene023939:CDS
TTGATTGAGATTAAAGAAAG+TGG 0.499336 7.4:-27888985 MS.gene023939:CDS
TCACGAAGGTCTTCCATAAG+AGG 0.499928 7.4:+27891974 None:intergenic
ACCTTCTTAACAGATTCAAA+AGG 0.513046 7.4:-27890623 MS.gene023939:CDS
AATGATTGATGAAAATAAAG+AGG 0.519990 7.4:-27889409 MS.gene023939:CDS
AACAGATTCAAAAGGACTGC+AGG 0.520736 7.4:-27890615 MS.gene023939:CDS
AGAGCTAGCAATGGATATGA+TGG 0.525717 7.4:-27890817 MS.gene023939:CDS
ATTCAAAAGGACTGCAGGCA+TGG 0.529095 7.4:-27890610 MS.gene023939:CDS
TCCATCAAAGACATATGAAA+GGG 0.529147 7.4:-27889955 MS.gene023939:intron
CATCATCCTGTTCCTCGAAA+CGG 0.531583 7.4:-27891947 MS.gene023939:CDS
TTGTTGAGTTTACTAGAGAA+GGG 0.533693 7.4:-27889110 MS.gene023939:CDS
TTCCATCAAAGACATATGAA+AGG 0.536197 7.4:-27889956 MS.gene023939:intron
GATCCAAGGACTCATTGAAT+CGG 0.548729 7.4:-27892074 MS.gene023939:CDS
TACAAAATGGAACAGTTAGA+GGG 0.549728 7.4:-27889344 MS.gene023939:CDS
CAACTTAGAACATCAAAGAA+AGG 0.556469 7.4:-27889706 MS.gene023939:CDS
GTTCTAAGTTGATCGACGAT+AGG 0.558574 7.4:+27889718 None:intergenic
TTAGGCATGGGAAGGTGAGA+TGG 0.558729 7.4:-27891660 MS.gene023939:intron
AGAATGCAATGGTGTGGTGG+TGG 0.564838 7.4:-27892104 MS.gene023939:CDS
TTGTTAAAGGACAGAAACTT+GGG 0.566313 7.4:-27889225 MS.gene023939:CDS
ACCTTGTTAGAGAAAGAAAA+GGG 0.568955 7.4:-27890677 MS.gene023939:CDS
GATCCTGTTATTATTGCAAG+TGG 0.569659 7.4:-27890468 MS.gene023939:CDS
GGATCTTGAGGTAGAAACAT+TGG 0.571196 7.4:-27890709 MS.gene023939:CDS
AATGGAAGGAACAGAAGAGA+GGG 0.575343 7.4:-27892179 MS.gene023939:CDS
GGTTATGATCAAATTTCAGA+AGG 0.576249 7.4:-27891639 MS.gene023939:CDS
CCTGAAGGGAGGCATGAGGT+TGG 0.577701 7.4:-27889156 MS.gene023939:CDS
TTGTTGAAATTGTGTAGCCA+AGG 0.579205 7.4:-27891875 MS.gene023939:CDS
GATAGGATTTGTACTAATGG+TGG 0.579251 7.4:+27889609 None:intergenic
TCACAGTGTTGAGGATCTTG+AGG 0.580007 7.4:-27890721 MS.gene023939:CDS
ACGTGCAACTCAGGAGGGCA+AGG 0.580025 7.4:-27890863 MS.gene023939:CDS
AAGGCACACCATCAAAAGCT+TGG 0.581211 7.4:+27891600 None:intergenic
GTTGGAAAATGGAAGTATTG+TGG 0.585943 7.4:-27889469 MS.gene023939:CDS
AACAGGTGACTTTCAATGGA+AGG 0.586665 7.4:-27892193 None:intergenic
ACAAAACCTGTCCGAAGACA+AGG 0.586908 7.4:-27889902 MS.gene023939:CDS
GGAAGGAACAGAAGAGAGGG+AGG 0.596520 7.4:-27892176 MS.gene023939:CDS
TTCGAGGAACAGGATGATGA+AGG 0.600018 7.4:+27891951 None:intergenic
GTTGGAGCTTCACAGTGTTG+AGG 0.602329 7.4:-27890730 MS.gene023939:CDS
TAATGCACGTGCAACTCAGG+AGG 0.604700 7.4:-27890869 MS.gene023939:CDS
CCAAGGACTCATTGAATCGG+TGG 0.611282 7.4:-27892071 MS.gene023939:CDS
TGTGTTTGAAACGACGAGCG+AGG 0.614739 7.4:+27892002 None:intergenic
TACTTGTGTTAACTCCTGAA+GGG 0.615594 7.4:-27889170 MS.gene023939:CDS
AAAGGGAAAGCATAGAGAAG+TGG 0.617041 7.4:-27889938 MS.gene023939:CDS
CCGATAGTGCCATTATCGAA+AGG 0.622407 7.4:-27890764 MS.gene023939:CDS
CAATGGAAGGAACAGAAGAG+AGG 0.623216 7.4:-27892180 MS.gene023939:CDS
AGAAGAATGCAATGGTGTGG+TGG 0.641470 7.4:-27892107 MS.gene023939:CDS
ACAAGACATAGAGCTAGCAA+TGG 0.643295 7.4:-27890826 MS.gene023939:CDS
AATGCACGTGCAACTCAGGA+GGG 0.649570 7.4:-27890868 MS.gene023939:CDS
GTGGTGGTGGAGGAGATCCA+AGG 0.649832 7.4:-27892088 MS.gene023939:CDS
AGAACCAGAATCAAGCAACC+CGG 0.656438 7.4:-27892146 MS.gene023939:CDS
AACTCCTGAAGGGAGGCATG+AGG 0.660040 7.4:-27889160 MS.gene023939:CDS
ATCATCATCAAAGATAACAT+CGG 0.668304 7.4:+27890581 None:intergenic
AATGAAGAAGAAGAATGCAA+TGG 0.671502 7.4:-27892115 MS.gene023939:CDS
GCTAATTGAAGATGTTCCAA+AGG 0.672940 7.4:+27889876 None:intergenic
GAAATCCCTAATTCATCACA+AGG 0.673692 7.4:+27891581 None:intergenic
TTGTGTTAACTCCTGAAGGG+AGG 0.688054 7.4:-27889167 MS.gene023939:CDS
CAGGATGATGAAGGTCACGA+AGG 0.693076 7.4:+27891960 None:intergenic
ATTGGACACAGAAACTCATG+AGG 0.705096 7.4:+27890510 None:intergenic
GTGGTACAAATAGAGCACAA+AGG 0.710749 7.4:-27888966 MS.gene023939:CDS
CTTAGAACATCAAAGAAAGG+CGG 0.713277 7.4:-27889703 MS.gene023939:CDS
GCTAGCAATGGATATGATGG+TGG 0.719121 7.4:-27890814 MS.gene023939:CDS
AGAAGAAGAATGCAATGGTG+TGG 0.735055 7.4:-27892110 MS.gene023939:CDS
GCGAATACAGAAGAACACAA+AGG 0.740376 7.4:-27892039 MS.gene023939:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTTATATCAAAAGA+AGG - chr7.4:27891580-27891599 MS.gene023939:CDS 15.0%
!! TCAATATATAATTATGTGTA+TGG - chr7.4:27889633-27889652 MS.gene023939:CDS 15.0%
!! TGAAATAATGTTATATACTT+TGG - chr7.4:27890187-27890206 MS.gene023939:intron 15.0%
!! TTCGTATTATAAATTTGATT+CGG - chr7.4:27890824-27890843 MS.gene023939:CDS 15.0%
!! TTGGTAAATTTATTACAAAA+TGG - chr7.4:27891739-27891758 MS.gene023939:intron 15.0%
!! AATGATTGATGAAAATAAAG+AGG - chr7.4:27891687-27891706 MS.gene023939:intron 20.0%
!! ACTAGTCATATTTATGAAAA+TGG - chr7.4:27890722-27890741 MS.gene023939:CDS 20.0%
!! CTATATAATAATGCTAACAA+AGG - chr7.4:27891080-27891099 MS.gene023939:intron 20.0%
!! TAAGAAATTTAATTGCTGAA+TGG - chr7.4:27891257-27891276 MS.gene023939:intron 20.0%
!! TATTGAATAAATGGTGTATT+TGG + chr7.4:27889931-27889950 None:intergenic 20.0%
!! TGCTTTAATAATTACACATT+TGG - chr7.4:27889971-27889990 MS.gene023939:intron 20.0%
!! TTCAGCAATTAAATTTCTTA+AGG + chr7.4:27891257-27891276 None:intergenic 20.0%
!! TTGTAGGTTTATTGAATAAA+TGG + chr7.4:27889940-27889959 None:intergenic 20.0%
!!! AAAAGTGTAATTATTAAGAG+CGG + chr7.4:27889837-27889856 None:intergenic 20.0%
!!! AAGTAATTCATCTTTTACTT+TGG - chr7.4:27892059-27892078 MS.gene023939:CDS 20.0%
!!! AATTGAATAACTGAAGTATT+TGG - chr7.4:27889892-27889911 MS.gene023939:CDS 20.0%
!!! ATTGAATAACTGAAGTATTT+TGG - chr7.4:27889893-27889912 MS.gene023939:CDS 20.0%
!!! CAATTTTAGATCTCATAAAA+AGG - chr7.4:27892163-27892182 MS.gene023939:CDS 20.0%
!!! TCTATGATTTCTCTTTTTTA+AGG - chr7.4:27889334-27889353 MS.gene023939:CDS 20.0%
!!! TGATTATGTTTTGATGAATA+GGG - chr7.4:27889384-27889403 MS.gene023939:CDS 20.0%
!!! TGTTCTTTTATTTTTGAATC+TGG + chr7.4:27891517-27891536 None:intergenic 20.0%
!!! TTGATTATGTTTTGATGAAT+AGG - chr7.4:27889383-27889402 MS.gene023939:CDS 20.0%
! AGCTTTACTTCAATTGTTAA+AGG - chr7.4:27891858-27891877 MS.gene023939:intron 25.0%
! ATCATCATCAAAGATAACAT+CGG + chr7.4:27890518-27890537 None:intergenic 25.0%
! ATTTCTCACTCTTAATCTAA+CGG - chr7.4:27890958-27890977 MS.gene023939:intron 25.0%
! TATGATAGGATTTGTACTAA+TGG + chr7.4:27891493-27891512 None:intergenic 25.0%
! TATTGAATAACTGGTGTATT+TGG + chr7.4:27890067-27890086 None:intergenic 25.0%
! TGTAATAAATTTACCAAAGC+TGG + chr7.4:27891736-27891755 None:intergenic 25.0%
! TTGATTGAGATTAAAGAAAG+TGG - chr7.4:27892111-27892130 MS.gene023939:CDS 25.0%
! TTGTAGGTTTATTGAATAAC+TGG + chr7.4:27890076-27890095 None:intergenic 25.0%
!! GACATAATTTCAAGTGTTAT+TGG + chr7.4:27890607-27890626 None:intergenic 25.0%
!! GCTCTTAATAATTACACTTT+TGG - chr7.4:27889836-27889855 MS.gene023939:CDS 25.0%
!! TTGTTGCTTATAATAGTGAT+CGG - chr7.4:27890103-27890122 MS.gene023939:intron 25.0%
!! TTTTTGAATCTGGATATGAT+AGG + chr7.4:27891507-27891526 None:intergenic 25.0%
!!! AACTTTCTTTTGATAACATG+CGG + chr7.4:27891429-27891448 None:intergenic 25.0%
!!! AAGCAACAAATCATTTTTGT+AGG + chr7.4:27889956-27889975 None:intergenic 25.0%
!!! AAGTTTGTTTGTTATTTACG+AGG + chr7.4:27889259-27889278 None:intergenic 25.0%
!!! ATAATAGAAGTGTTGGAAAA+TGG - chr7.4:27891616-27891635 MS.gene023939:CDS 25.0%
!!! TCTTTTTTTTCTTGCGTTTT+AGG - chr7.4:27889418-27889437 MS.gene023939:CDS 25.0%
AAATTTCTTAAGGCACAGTT+TGG + chr7.4:27891247-27891266 None:intergenic 30.0%
AACCTTGTTAGAGAAAGAAA+AGG - chr7.4:27890418-27890437 MS.gene023939:intron 30.0%
AATGAAGAAGAAGAATGCAA+TGG - chr7.4:27888981-27889000 MS.gene023939:CDS 30.0%
AATGCATGTATTTGTGAATG+CGG + chr7.4:27889701-27889720 None:intergenic 30.0%
ACCTTCTTAACAGATTCAAA+AGG - chr7.4:27890473-27890492 MS.gene023939:CDS 30.0%
ACCTTGTTAGAGAAAGAAAA+GGG - chr7.4:27890419-27890438 MS.gene023939:intron 30.0%
ATTGTTAAAGGACAGAAACT+TGG - chr7.4:27891870-27891889 MS.gene023939:CDS 30.0%
CAACTTAGAACATCAAAGAA+AGG - chr7.4:27891390-27891409 MS.gene023939:intron 30.0%
GATGAAAATAAAGAGGTTGT+AGG - chr7.4:27891694-27891713 MS.gene023939:intron 30.0%
GGTTATGATCAAATTTCAGA+AGG - chr7.4:27889457-27889476 MS.gene023939:CDS 30.0%
TACAAAATGGAACAGTTAGA+GGG - chr7.4:27891752-27891771 MS.gene023939:intron 30.0%
TCCATCAAAGACATATGAAA+GGG - chr7.4:27891141-27891160 MS.gene023939:intron 30.0%
TTACAAAATGGAACAGTTAG+AGG - chr7.4:27891751-27891770 MS.gene023939:intron 30.0%
TTCCATCAAAGACATATGAA+AGG - chr7.4:27891140-27891159 MS.gene023939:intron 30.0%
TTCTGATGAAGTAAAAGAAC+AGG - chr7.4:27889535-27889554 MS.gene023939:CDS 30.0%
TTGTTAAAGGACAGAAACTT+GGG - chr7.4:27891871-27891890 MS.gene023939:CDS 30.0%
TTGTTGAGTTTACTAGAGAA+GGG - chr7.4:27891986-27892005 MS.gene023939:CDS 30.0%
TTTCACATTTAAGCCTAAGT+TGG - chr7.4:27890693-27890712 MS.gene023939:CDS 30.0%
! AAATTAAGCCAAGCTTTTGA+TGG - chr7.4:27889488-27889507 MS.gene023939:CDS 30.0%
! ATCTGGAATGAAGAAAACTT+AGG - chr7.4:27891049-27891068 MS.gene023939:intron 30.0%
! TCCTTTTGAATCTGTTAAGA+AGG + chr7.4:27890477-27890496 None:intergenic 30.0%
! TCTTCTTCATTCTCATTTTC+CGG + chr7.4:27888972-27888991 None:intergenic 30.0%
! TGACATGAAGAACAGATTTT+TGG + chr7.4:27891307-27891326 None:intergenic 30.0%
! TTATGAAAATGGATTCGATG+CGG - chr7.4:27890733-27890752 MS.gene023939:CDS 30.0%
!! TGGAATTTCTTCTTGGTTTT+CGG + chr7.4:27891344-27891363 None:intergenic 30.0%
!! TTCTGAAATCCAATCATCTA+CGG - chr7.4:27890900-27890919 MS.gene023939:intron 30.0%
!!! ATGGAACCCTTATTTTATTC+CGG - chr7.4:27889652-27889671 MS.gene023939:CDS 30.0%
AAAGAGAGAGCTATAAAAGC+TGG - chr7.4:27891826-27891845 MS.gene023939:intron 35.0%
ACCTTGCCGGAATAAAATAA+GGG + chr7.4:27889661-27889680 None:intergenic 35.0%
ACTACTAGCAACATAGTGAT+CGG + chr7.4:27890142-27890161 None:intergenic 35.0%
ACTGTTGCATACATATTGGA+CGG - chr7.4:27890788-27890807 MS.gene023939:CDS 35.0%
ATTGAATCGGTGGTTCAATT+CGG - chr7.4:27889035-27889054 MS.gene023939:CDS 35.0%
CACAAATACATGCATTCACA+TGG - chr7.4:27889705-27889724 MS.gene023939:CDS 35.0%
CCAAACATGGAATTTCTTCT+TGG + chr7.4:27891351-27891370 None:intergenic 35.0%
CCAAGAAGAAATTCCATGTT+TGG - chr7.4:27891348-27891367 MS.gene023939:intron 35.0%
CTTAGAACATCAAAGAAAGG+CGG - chr7.4:27891393-27891412 MS.gene023939:intron 35.0%
CTTCATTCCAGATTCTCTAA+AGG + chr7.4:27891042-27891061 None:intergenic 35.0%
CTTCTTCCAAGCATCTTATT+AGG + chr7.4:27890550-27890569 None:intergenic 35.0%
CTTGTTGAGTTTACTAGAGA+AGG - chr7.4:27891985-27892004 MS.gene023939:CDS 35.0%
GAAATCCCTAATTCATCACA+AGG + chr7.4:27889518-27889537 None:intergenic 35.0%
GAACTTAATTCGTGATTACC+TGG + chr7.4:27890654-27890673 None:intergenic 35.0%
GACTAGTATCTTTCCAACTT+AGG + chr7.4:27890709-27890728 None:intergenic 35.0%
GATAGGATTTGTACTAATGG+TGG + chr7.4:27891490-27891509 None:intergenic 35.0%
GATCCTGTTATTATTGCAAG+TGG - chr7.4:27890628-27890647 MS.gene023939:CDS 35.0%
GCTAATTGAAGATGTTCCAA+AGG + chr7.4:27891223-27891242 None:intergenic 35.0%
TACTTGTGTTAACTCCTGAA+GGG - chr7.4:27891926-27891945 MS.gene023939:CDS 35.0%
TCCAACACTTCTATTATAGC+TGG + chr7.4:27891613-27891632 None:intergenic 35.0%
TCCAATCTTTATCCAACAGT+CGG - chr7.4:27890867-27890886 MS.gene023939:CDS 35.0%
TCCCTTTCATATGTCTTTGA+TGG + chr7.4:27891145-27891164 None:intergenic 35.0%
TGCTTATAATAGTGATCGGA+TGG - chr7.4:27890107-27890126 MS.gene023939:intron 35.0%
TTGTTGAAATTGTGTAGCCA+AGG - chr7.4:27889221-27889240 MS.gene023939:CDS 35.0%
! CTTCTTCATTCTCATTTTCC+GGG + chr7.4:27888971-27888990 None:intergenic 35.0%
! GATAGGTTTTCAACCAAACA+TGG + chr7.4:27891364-27891383 None:intergenic 35.0%
! TAGCTCTCTCTTTATTTGCA+TGG + chr7.4:27891819-27891838 None:intergenic 35.0%
! TCCAGCTATAATAGAAGTGT+TGG - chr7.4:27891609-27891628 MS.gene023939:CDS 35.0%
! TCCCTTTTCTTTCTCTAACA+AGG + chr7.4:27890423-27890442 None:intergenic 35.0%
! TTTTGCAAGCCTTTCGATAA+TGG + chr7.4:27890344-27890363 None:intergenic 35.0%
!! AGAATTTTAGTCGCCGAAAA+CGG - chr7.4:27891457-27891476 MS.gene023939:intron 35.0%
!! ATCTGCTTGTTTTCTACATC+TGG + chr7.4:27889744-27889763 None:intergenic 35.0%
!! ATTTCTTCTTGGTTTTCGGT+TGG + chr7.4:27891340-27891359 None:intergenic 35.0%
!! ATTTTGGCCTTTAGAGAATC+TGG - chr7.4:27891032-27891051 MS.gene023939:intron 35.0%
!! GTTGGAAAATGGAAGTATTG+TGG - chr7.4:27891627-27891646 MS.gene023939:CDS 35.0%
!! TTTTCTTGCGTTTTAGGCAT+GGG - chr7.4:27889424-27889443 MS.gene023939:CDS 35.0%
!! TTTTTCTTGCGTTTTAGGCA+TGG - chr7.4:27889423-27889442 MS.gene023939:CDS 35.0%
AACAGATTCAAAAGGACTGC+AGG - chr7.4:27890481-27890500 MS.gene023939:CDS 40.0%
ACAAGACATAGAGCTAGCAA+TGG - chr7.4:27890270-27890289 MS.gene023939:intron 40.0%
AGAAGAAGAATGCAATGGTG+TGG - chr7.4:27888986-27889005 MS.gene023939:CDS 40.0%
AGAAGGGACTCCAAAGAATA+AGG - chr7.4:27892002-27892021 MS.gene023939:CDS 40.0%
AGAGCTAGCAATGGATATGA+TGG - chr7.4:27890279-27890298 MS.gene023939:intron 40.0%
AGGCCAAAATCCACAAACTT+CGG + chr7.4:27891022-27891041 None:intergenic 40.0%
ATTGGACACAGAAACTCATG+AGG + chr7.4:27890589-27890608 None:intergenic 40.0%
CAAACACATGTTGCCTCTTA+TGG - chr7.4:27889109-27889128 MS.gene023939:CDS 40.0%
CACCTTGCCGGAATAAAATA+AGG + chr7.4:27889662-27889681 None:intergenic 40.0%
CATTCGTGCAATTTGCACAT+TGG + chr7.4:27889783-27889802 None:intergenic 40.0%
CGAAAGGCTTGCAAAAAAGT+TGG - chr7.4:27890348-27890367 MS.gene023939:intron 40.0%
CTACTTGTGTTAACTCCTGA+AGG - chr7.4:27891925-27891944 MS.gene023939:CDS 40.0%
CTCGACTGTTGCATACATAT+TGG - chr7.4:27890784-27890803 MS.gene023939:CDS 40.0%
GATCCAAGGACTCATTGAAT+CGG - chr7.4:27889022-27889041 MS.gene023939:CDS 40.0%
GCGAATACAGAAGAACACAA+AGG - chr7.4:27889057-27889076 MS.gene023939:CDS 40.0%
GCTGCACATTCCTTATTCTT+TGG + chr7.4:27892015-27892034 None:intergenic 40.0%
GGATCTTGAGGTAGAAACAT+TGG - chr7.4:27890387-27890406 MS.gene023939:intron 40.0%
GTGGTACAAATAGAGCACAA+AGG - chr7.4:27892130-27892149 MS.gene023939:CDS 40.0%
GTGTGCCTTGTGATGAATTA+GGG - chr7.4:27889510-27889529 MS.gene023939:CDS 40.0%
TCCAAGCATCTTATTAGGCA+TGG + chr7.4:27890545-27890564 None:intergenic 40.0%
TCCGACTGTTGGATAAAGAT+TGG + chr7.4:27890871-27890890 None:intergenic 40.0%
TGGCCACTTGCAATAATAAC+AGG + chr7.4:27890634-27890653 None:intergenic 40.0%
TGTTATTATTGCAAGTGGCC+AGG - chr7.4:27890633-27890652 MS.gene023939:CDS 40.0%
TTTGTGAATGCGGTGTATTG+CGG + chr7.4:27889691-27889710 None:intergenic 40.0%
! AAAGGGAAAGCATAGAGAAG+TGG - chr7.4:27891158-27891177 MS.gene023939:intron 40.0%
! ATTTGCACATTGGTGGTTGT+TGG + chr7.4:27889773-27889792 None:intergenic 40.0%
! CCTTTCGATAATGGCACTAT+CGG + chr7.4:27890335-27890354 None:intergenic 40.0%
!! AGGTTGTAGGAGTGTCAAAT+GGG - chr7.4:27891707-27891726 MS.gene023939:intron 40.0%
!! GTTCTAAGTTGATCGACGAT+AGG + chr7.4:27891381-27891400 None:intergenic 40.0%
!!! ACCCTTATTTTATTCCGGCA+AGG - chr7.4:27889657-27889676 MS.gene023939:CDS 40.0%
AAGGCACACCATCAAAAGCT+TGG + chr7.4:27889499-27889518 None:intergenic 45.0%
ACAAAACCTGTCCGAAGACA+AGG - chr7.4:27891194-27891213 MS.gene023939:intron 45.0%
ACATCATAGTGCAGCTGTAG+AGG - chr7.4:27890995-27891014 MS.gene023939:intron 45.0%
ACTTTGGCAGCACTTCAGTT+TGG - chr7.4:27892075-27892094 MS.gene023939:CDS 45.0%
AGAACCAGAATCAAGCAACC+CGG - chr7.4:27888950-27888969 MS.gene023939:CDS 45.0%
AGAAGAATGCAATGGTGTGG+TGG - chr7.4:27888989-27889008 MS.gene023939:CDS 45.0%
ATTCAAAAGGACTGCAGGCA+TGG - chr7.4:27890486-27890505 MS.gene023939:CDS 45.0%
CATCATCCTGTTCCTCGAAA+CGG - chr7.4:27889149-27889168 MS.gene023939:CDS 45.0%
GCATTCACATGGTCAATCGT+TGG - chr7.4:27889716-27889735 MS.gene023939:CDS 45.0%
GCCATGCCTAATAAGATGCT+TGG - chr7.4:27890541-27890560 MS.gene023939:CDS 45.0%
GCTAGCAATGGATATGATGG+TGG - chr7.4:27890282-27890301 MS.gene023939:intron 45.0%
GGTGTGCCTTGTGATGAATT+AGG - chr7.4:27889509-27889528 MS.gene023939:CDS 45.0%
GTCAAATGGGATTCCAGCTT+TGG - chr7.4:27891720-27891739 MS.gene023939:intron 45.0%
GTGCAAATTGCACGAATGCA+CGG - chr7.4:27889785-27889804 MS.gene023939:CDS 45.0%
TCACGAAGGTCTTCCATAAG+AGG + chr7.4:27889125-27889144 None:intergenic 45.0%
TCGTGCAATTTGCACATTGG+TGG + chr7.4:27889780-27889799 None:intergenic 45.0%
TTCGAGGAACAGGATGATGA+AGG + chr7.4:27889148-27889167 None:intergenic 45.0%
TTGTGTTAACTCCTGAAGGG+AGG - chr7.4:27891929-27891948 MS.gene023939:CDS 45.0%
! AGATGCGCTTTTCTTCGCTA+AGG - chr7.4:27889196-27889215 MS.gene023939:CDS 45.0%
! CCGATAGTGCCATTATCGAA+AGG - chr7.4:27890332-27890351 MS.gene023939:intron 45.0%
! CGAAGAAAAGCGCATCTCTA+AGG + chr7.4:27889193-27889212 None:intergenic 45.0%
! CGAGGTGAATTTTGCTTCCT+TGG + chr7.4:27889241-27889260 None:intergenic 45.0%
! GAGGTAGAAACATTGGCTGT+TGG - chr7.4:27890394-27890413 MS.gene023939:intron 45.0%
! GGACCGAAGTTTGTGGATTT+TGG - chr7.4:27891016-27891035 MS.gene023939:intron 45.0%
! TCACAGTGTTGAGGATCTTG+AGG - chr7.4:27890375-27890394 MS.gene023939:intron 45.0%
! TGGTGGTATTCCTCCGTTTT+CGG + chr7.4:27891473-27891492 None:intergenic 45.0%
! TTTTCCGGGTTGCTTGATTC+TGG + chr7.4:27888957-27888976 None:intergenic 45.0%
!! ATTTTAGTCGCCGAAAACGG+AGG - chr7.4:27891460-27891479 MS.gene023939:intron 45.0%
!! CTTCGGACAGGTTTTGTGAT+TGG + chr7.4:27891191-27891210 None:intergenic 45.0%
!! GAGGTTGTAGGAGTGTCAAA+TGG - chr7.4:27891706-27891725 MS.gene023939:intron 45.0%
!! GCTTGGAAGAAGCACTTCTT+TGG - chr7.4:27890558-27890577 MS.gene023939:CDS 45.0%
!! TTCTTGGTTTTCGGTTGGAG+TGG + chr7.4:27891335-27891354 None:intergenic 45.0%
AACCAAACAACGCCGTTTCG+AGG + chr7.4:27889164-27889183 None:intergenic 50.0%
AATCCACAGAGTCCGACTGT+TGG + chr7.4:27890882-27890901 None:intergenic 50.0%
AATGCACGTGCAACTCAGGA+GGG - chr7.4:27890228-27890247 MS.gene023939:intron 50.0%
AGAATGCAATGGTGTGGTGG+TGG - chr7.4:27888992-27889011 MS.gene023939:CDS 50.0%
AGCTAATGCACGTGCAACTC+AGG - chr7.4:27890224-27890243 MS.gene023939:intron 50.0%
CAACTGCAGCCGTAGATGAT+TGG + chr7.4:27890912-27890931 None:intergenic 50.0%
CAGGATGATGAAGGTCACGA+AGG + chr7.4:27889139-27889158 None:intergenic 50.0%
CATCTACGGCTGCAGTTGTA+GGG - chr7.4:27890914-27890933 MS.gene023939:intron 50.0%
CCAAGGACTCATTGAATCGG+TGG - chr7.4:27889025-27889044 MS.gene023939:CDS 50.0%
CTGTAGAGGACCGAAGTTTG+TGG - chr7.4:27891009-27891028 MS.gene023939:intron 50.0%
GAAACGGCGTTGTTTGGTTG+AGG - chr7.4:27889165-27889184 MS.gene023939:CDS 50.0%
GTTGGAGCTTCACAGTGTTG+AGG - chr7.4:27890366-27890385 MS.gene023939:intron 50.0%
TAATGCACGTGCAACTCAGG+AGG - chr7.4:27890227-27890246 MS.gene023939:intron 50.0%
TATCCAACAGTCGGACTCTG+TGG - chr7.4:27890876-27890895 MS.gene023939:CDS 50.0%
TCATCTACGGCTGCAGTTGT+AGG - chr7.4:27890913-27890932 MS.gene023939:intron 50.0%
TCCAAAGGCTGCCTTGTCTT+CGG + chr7.4:27891208-27891227 None:intergenic 50.0%
TTAGGCATGGGAAGGTGAGA+TGG - chr7.4:27889436-27889455 MS.gene023939:CDS 50.0%
TTCCTCGAAACGGCGTTGTT+TGG - chr7.4:27889159-27889178 MS.gene023939:CDS 50.0%
! TGTGTTTGAAACGACGAGCG+AGG + chr7.4:27889097-27889116 None:intergenic 50.0%
!! CCACCGATTCAATGAGTCCT+TGG + chr7.4:27889028-27889047 None:intergenic 50.0%
!! CTTGCGTTTTAGGCATGGGA+AGG - chr7.4:27889428-27889447 MS.gene023939:CDS 50.0%
ACAACGCCGTTTCGAGGAAC+AGG + chr7.4:27889158-27889177 None:intergenic 55.0%
GGAAGGAACAGAAGAGAGGG+AGG - chr7.4:27888920-27888939 MS.gene023939:CDS 55.0%
TCCGAAGACAAGGCAGCCTT+TGG - chr7.4:27891204-27891223 MS.gene023939:intron 55.0%
TTGCGGCGAATACACCTTGC+CGG + chr7.4:27889674-27889693 None:intergenic 55.0%
! AACTCCTGAAGGGAGGCATG+AGG - chr7.4:27891936-27891955 MS.gene023939:CDS 55.0%
!! ATGCAATGGTGTGGTGGTGG+TGG - chr7.4:27888995-27889014 MS.gene023939:CDS 55.0%
ACGTGCAACTCAGGAGGGCA+AGG - chr7.4:27890233-27890252 MS.gene023939:intron 60.0%
AGGCTGCCTTGTCTTCGGAC+AGG + chr7.4:27891203-27891222 None:intergenic 60.0%
CCAACCTCATGCCTCCCTTC+AGG + chr7.4:27891943-27891962 None:intergenic 60.0%
! CCTGAAGGGAGGCATGAGGT+TGG - chr7.4:27891940-27891959 MS.gene023939:CDS 60.0%
!! CAATGGTGTGGTGGTGGTGG+AGG - chr7.4:27888998-27889017 MS.gene023939:CDS 60.0%
!! GTGGTGGTGGAGGAGATCCA+AGG - chr7.4:27889008-27889027 MS.gene023939:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 27888918 27892200 27888918 ID=MS.gene023939
chr7.4 mRNA 27888918 27892200 27888918 ID=MS.gene023939.t1;Parent=MS.gene023939
chr7.4 exon 27891859 27892200 27891859 ID=MS.gene023939.t1.exon1;Parent=MS.gene023939.t1
chr7.4 CDS 27891859 27892200 27891859 ID=cds.MS.gene023939.t1;Parent=MS.gene023939.t1
chr7.4 exon 27891562 27891678 27891562 ID=MS.gene023939.t1.exon2;Parent=MS.gene023939.t1
chr7.4 CDS 27891562 27891678 27891562 ID=cds.MS.gene023939.t1;Parent=MS.gene023939.t1
chr7.4 exon 27890464 27890898 27890464 ID=MS.gene023939.t1.exon3;Parent=MS.gene023939.t1
chr7.4 CDS 27890464 27890898 27890464 ID=cds.MS.gene023939.t1;Parent=MS.gene023939.t1
chr7.4 exon 27888918 27889967 27888918 ID=MS.gene023939.t1.exon4;Parent=MS.gene023939.t1
chr7.4 CDS 27888918 27889967 27888918 ID=cds.MS.gene023939.t1;Parent=MS.gene023939.t1
Gene Sequence

>MS.gene023939

ATGGAAGGAACAGAAGAGAGGGAGGAAAATGTAGAACCAGAATCAAGCAACCCGGAAAATGAGAATGAAGAAGAAGAATGCAATGGTGTGGTGGTGGTGGAGGAGATCCAAGGACTCATTGAATCGGTGGTTCAATTCGGCGAATACAGAAGAACACAAAGGAAAGAATCACACAACCTCGCTCGTCGTTTCAAACACATGTTGCCTCTTATGGAAGACCTTCGTGACCTTCATCATCCTGTTCCTCGAAACGGCGTTGTTTGGTTGAGGAACCTTAGAGATGCGCTTTTCTTCGCTAAGGATTTGTTGAAATTGTGTAGCCAAGGAAGCAAAATTCACCTCGTAAATAACAAACAAACTTTTTCTCATTTTTATGTTTTTTTTCTTTTTCTAATGAAATAATACAAATCATCAAATCTATGATTTCTCTTTTTTAAGGATAAGAAATAATTATCATTTTTGTATTTGATTATGTTTTGATGAATAGGGTATTGATGTTTTCTTTTTTTTCTTGCGTTTTAGGCATGGGAAGGTGAGATGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGCCAAGCTTTTGATGGTGTGCCTTGTGATGAATTAGGGATTTCTGATGAAGTAAAAGAACAGGTATTTGTAAATTGTAATACATTTTATGTTTTATTTTCATTTAGTTTAATAATCACTATGATTCTGCAAAGATTGTTCAATATATAATTATGTGTATGGAACCCTTATTTTATTCCGGCAAGGTGTATTCGCCGCAATACACCGCATTCACAAATACATGCATTCACATGGTCAATCGTTGGATCCAGATGTAGAAAACAAGCAGATTTTGATCCAACAACCACCAATGTGCAAATTGCACGAATGCACGGAATTTGTGACTATATCAAATGCAAATCCGCTCTTAATAATTACACTTTTGGTCACTGTTATAAGCAAAAAATCAGTTTTAGATTAATTGAATAACTGAAGTATTTGGTCTATAATATATACCAAATACACCATTTATTCAATAAACCTACAAAAATGATTTGTTGCTTTAATAATTACACATTTGGTCACTGTTATAAGCAAAAAATCATTTTTAGATTAATTGAATAACTGAAGTATTTTGGTCTATAATATAGACCAAATACACCAGTTATTCAATAAACCTACAAAAATGATTTGTTGCTTATAATAGTGATCGGATGGAGCAATTATCCGATCACTATGTTGCTAGTAGTCTTCGATCATATATAATATACATATTGAAATAATGTTATATACTTTGGCTTAATTCAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAGCTAGCAATGGATATGATGGTGGTGTTCTCTGATGAAGATGATCGTAATGCCGATAGTGCCATTATCGAAAGGCTTGCAAAAAAGTTGGAGCTTCACAGTGTTGAGGATCTTGAGGTAGAAACATTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGGAAACAAAGTGAGAGTACAAAAAAAATAATTGACCTTCTTAACAGATTCAAAAGGACTGCAGGCATGGAAGAAACCGATGTTATCTTTGATGATGATCATGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATTCCTCATGAGTTTCTGTGTCCAATAACACTTGAAATTATGTCTGATCCTGTTATTATTGCAAGTGGCCAGGTAATCACGAATTAAGTTCTGTAAAAGAATTTTAATTTTTTCACATTTAAGCCTAAGTTGGAAAGATACTAGTCATATTTATGAAAATGGATTCGATGCGGTCAATAATTTCTACTATAATCAATAGATCTCGACTGTTGCATACATATTGGACGGTTCATATTATGAATTCGTATTATAAATTTGATTCGGTGAAGTTCAAATATGAATCGTCCAATCTTTATCCAACAGTCGGACTCTGTGGATTCTGAAATCCAATCATCTACGGCTGCAGTTGTAGGGACTATTAGATTTAGAATGAGAATTTCTCACTCTTAATCTAACGGTCGCGACATATGCAACATCATAGTGCAGCTGTAGAGGACCGAAGTTTGTGGATTTTGGCCTTTAGAGAATCTGGAATGAAGAAAACTTAGGTTTTATCTCTATATAATAATGCTAACAAAGGTTTTGTTTCTCTTTTTCTTGTCATTGTGTGTGTTTGTTTCCATCAAAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCACAAAACCTGTCCGAAGACAAGGCAGCCTTTGGAACATCTTCAATTAGCACCAAACTGTGCCTTAAGAAATTTAATTGCTGAATGGTGTGAGAACAACAATTTCAAACTTCCAAAAATCTGTTCTTCATGTCAAGAAACCACTCCAACCGAAAACCAAGAAGAAATTCCATGTTTGGTTGAAAACCTATCGTCGATCAACTTAGAACATCAAAGAAAGGCGGTCGAGAGAATCCGCATGTTATCAAAAGAAAGTTCAGAGAACAGAATTTTAGTCGCCGAAAACGGAGGAATACCACCATTAGTACAAATCCTATCATATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAACTTATCAATTGATGAAGCTAACAAAAAACTTATATCAAAAGAAGGTGCTATTCCAGCTATAATAGAAGTGTTGGAAAATGGAAGTATTGTGGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGGTTGTAGGAGTGTCAAATGGGATTCCAGCTTTGGTAAATTTATTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACCATGCAAATAAAGAGAGAGCTATAAAAGCTGGAATTGTGACAGCTTTACTTCAATTGTTAAAGGACAGAAACTTGGGAATGATTGATGAAGCACTTTCTATTTTGTTGCTACTTGTGTTAACTCCTGAAGGGAGGCATGAGGTTGGACAATTATCATTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCAAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCATCTTTTACTTTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTGATTGAGATTAAAGAAAGTGGTACAAATAGAGCACAAAGGAAAGCAAATGCAATTTTAGATCTCATAAAAAGGAGTGAGCAAATTTAA
Protein sequence

>MS.gene023939.t1

MEGTEEREENVEPESSNPENENEEEECNGVVVVEEIQGLIESVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLHHPVPRNGVVWLRNLRDALFFAKDLLKLCSQGSKIHLAWEGEMVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLEVETLAVGNLVRERKGKQSESTKKIIDLLNRFKRTAGMEETDVIFDDDHAMPNKMLGRSTSLVIPHEFLCPITLEIMSDPVIIASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALRNLIAEWCENNNFKLPKICSSCQETTPTENQEEIPCLVENLSSINLEHQRKAVERIRMLSKESSENRILVAENGGIPPLVQILSYPDSKIKEHAVTALLNLSIDEANKKLISKEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEVVGVSNGIPALVNLLQNGTVRGKKDAATALFSLSLNHANKERAIKAGIVTALLQLLKDRNLGMIDEALSILLLLVLTPEGRHEVGQLSFIETLVEFTREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYEHLIEIKESGTNRAQRKANAILDLIKRSEQI