AlfalfaGEDB | MS.gene34076

M. sativa cultivar XinJiangDaYe / MS.gene34076

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00514.26 PF04564.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34076.t1	RHN81458.1	98.4	630	10	0	1	630	1	630	2.00E-260	908.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34076.t1	Q8VZ40	58.6	403	166	1	11	412	12	414	2.9e-127	457.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34076.t1	A0A396JZJ0	98.4	630	10	0	1	630	1	630	1.4e-260	908.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene34076	0.86836	6.92E-66	-1.69E-46
MS.gene04998	MS.gene34076	0.803928	2.76E-49	-1.69E-46
MS.gene049983	MS.gene34076	0.809908	1.50E-50	-1.69E-46
MS.gene050379	MS.gene34076	0.817691	2.89E-52	-1.69E-46
MS.gene050414	MS.gene34076	0.804692	1.91E-49	-1.69E-46
MS.gene050646	MS.gene34076	0.832311	1.02E-55	-1.69E-46
MS.gene050945	MS.gene34076	0.829983	3.79E-55	-1.69E-46
MS.gene051959	MS.gene34076	0.829048	6.40E-55	-1.69E-46
MS.gene051960	MS.gene34076	0.828012	1.14E-54	-1.69E-46
MS.gene052016	MS.gene34076	0.812388	4.35E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene023937	MS.gene34076	PPI
MS.gene023939	MS.gene34076	PPI
MS.gene058531	MS.gene34076	PPI
MS.gene058533	MS.gene34076	PPI
MS.gene85423	MS.gene34076	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34076.t1	MTR_1g094215	97.937	630	13	0	1	630	1	630	0.0	1259
MS.gene34076.t1	MTR_1g094215	97.763	447	10	0	184	630	1	447	0.0	893
MS.gene34076.t1	MTR_4g063800	54.808	624	268	2	12	621	6	629	0.0	659
MS.gene34076.t1	MTR_4g485520	45.114	614	299	7	38	622	46	650	9.03e-164	484
MS.gene34076.t1	MTR_7g059405	47.140	577	275	6	66	618	62	632	1.53e-161	477
MS.gene34076.t1	MTR_7g078330	42.190	621	347	5	9	622	29	644	9.81e-156	463
MS.gene34076.t1	MTR_4g485520	58.311	379	156	1	246	622	104	482	7.51e-152	447
MS.gene34076.t1	MTR_5g083030	35.575	669	349	11	21	620	30	685	1.04e-122	379
MS.gene34076.t1	MTR_2g018010	35.828	628	359	13	33	622	56	677	1.58e-97	314
MS.gene34076.t1	MTR_1g093965	52.431	288	44	3	260	547	1	195	5.76e-85	265

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34076.t1	AT3G54850	66.612	614	204	1	11	623	12	625	0.0	815
MS.gene34076.t1	AT3G46510	52.373	632	283	4	5	621	2	630	0.0	640
MS.gene34076.t1	AT2G28830	51.273	550	245	8	92	621	17	563	5.61e-179	520
MS.gene34076.t1	AT1G71020	45.866	641	302	12	2	620	3	620	1.99e-159	472
MS.gene34076.t1	AT1G23030	44.234	633	313	11	2	620	3	609	3.91e-154	457
MS.gene34076.t1	AT5G42340	42.139	617	330	6	15	622	60	658	1.46e-147	442
MS.gene34076.t1	AT1G71020	57.545	391	162	3	234	620	82	472	5.17e-142	422
MS.gene34076.t1	AT3G07360	41.995	381	210	8	248	620	75	452	1.26e-87	281
MS.gene34076.t1	AT1G29340	35.315	572	338	12	81	622	120	689	7.00e-84	278
MS.gene34076.t1	AT2G23140	54.513	277	125	1	343	619	352	627	1.43e-82	273

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Find 129 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCAGCAGCATTCTCA+CGG	0.633676	1.2:-74263937	None:intergenic
AAAGCTAGAGCTGTTAAAGC+CGG	0.526299	1.2:+74263743	MS.gene34076:CDS
AAAGGAACTATAGTAAACGC+AGG	0.682325	1.2:+74263497	MS.gene34076:CDS
AAAGTAACTTTATAAGAGCC+GGG	0.549044	1.2:-74263649	None:intergenic
AAAGTTGCAATAGGTGCAGC+AGG	0.503040	1.2:+74263620	MS.gene34076:CDS
AACGTTTGTAAGAAGATGTA+TGG	0.367485	1.2:+74259623	MS.gene34076:CDS
AACTAAAATAGGGATTGGCT+CGG	0.594552	1.2:-74263885	None:intergenic
AACTGCTATCAAAGCTTTAT+TGG	0.228618	1.2:+74263268	MS.gene34076:CDS
AACTGTTGCAGCGAATCGAA+GGG	0.569767	1.2:+74264089	MS.gene34076:CDS
AAGCGGTATTGCTCCTGCTT+CGG	0.508786	1.2:-74263387	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCCTGCATTCAAAAA+TGG	+	chr1.2:74263060-74263079	MS.gene34076:CDS	30.0%
AAAGTAACTTTATAAGAGCC+GGG	-	chr1.2:74263652-74263671	None:intergenic	30.0%
AAATATTCAAGCTCAATTGC+AGG	+	chr1.2:74260547-74260566	MS.gene34076:intron	30.0%
AACATTACCTCCTTCAAAAT+TGG	-	chr1.2:74259941-74259960	None:intergenic	30.0%
AACGTTTGTAAGAAGATGTA+TGG	+	chr1.2:74259623-74259642	MS.gene34076:CDS	30.0%
ACAACACCAATTTAAGCAAT+CGG	-	chr1.2:74260578-74260597	None:intergenic	30.0%
ACCAAACATAGTGTAAAAGA+GGG	+	chr1.2:74262153-74262172	MS.gene34076:intron	30.0%
ACGTTTGTAAGAAGATGTAT+GGG	+	chr1.2:74259624-74259643	MS.gene34076:CDS	30.0%
ACTAGCTGAATATTTCAATG+TGG	+	chr1.2:74261392-74261411	MS.gene34076:intron	30.0%
AGAACACATGTTTCAAATTC+AGG	-	chr1.2:74260603-74260622	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	74259536	74264135	74259536	ID=MS.gene34076
chr1.2	mRNA	74259536	74264135	74259536	ID=MS.gene34076.t1;Parent=MS.gene34076
chr1.2	exon	74259536	74259814	74259536	ID=MS.gene34076.t1.exon1;Parent=MS.gene34076.t1
chr1.2	CDS	74259536	74259814	74259536	ID=cds.MS.gene34076.t1;Parent=MS.gene34076.t1
chr1.2	exon	74262292	74262408	74262292	ID=MS.gene34076.t1.exon2;Parent=MS.gene34076.t1
chr1.2	CDS	74262292	74262408	74262292	ID=cds.MS.gene34076.t1;Parent=MS.gene34076.t1
chr1.2	exon	74262553	74262966	74262553	ID=MS.gene34076.t1.exon3;Parent=MS.gene34076.t1
chr1.2	CDS	74262553	74262966	74262553	ID=cds.MS.gene34076.t1;Parent=MS.gene34076.t1
chr1.2	exon	74263053	74264135	74263053	ID=MS.gene34076.t1.exon4;Parent=MS.gene34076.t1
chr1.2	CDS	74263053	74264135	74263053	ID=cds.MS.gene34076.t1;Parent=MS.gene34076.t1

Gene Sequence

>MS.gene34076

ATGGGTGGGAGCGAGAATCCAAAGGCTATGGTTGTGGGTCGTTTGGCTGATTCAATCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGTAAGAAGATGTATGGGAATTTGATTCGTAGGGTGAAGCTTTTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGTCTCTTGGTGATCAAGAGATTGAAGCTTTTGAATCTTTGAGGGTTGCTTTGGATTTGACTATGACTCTTCTCAAGTCCGTGAATCATGGGAGTAAGCTTTATCAGGTATAGTTTTTTTTTTTTTTTTGTTTATCCCTTTTGGTGTTTTAATTGAAAGAGTTAAGTTAGTTTTTTATTTGATTGATGGAGAATTAAAAATTCAGGATAAATCTATGTGTATGTTATGTTCCAATTTTGAAGGAGGTAATGTTGATTATAAAGGTGTAGAATTGACTTTTACATAATGTTTGGATGTTCTTGAGTAAAATTGATTTTACCTCCGAGTTGATTATAACTTTACTACTTAAGCTCGAATTTAGAGCTTTTGTCTCAACAATTGAAATTTTAGCTTCAAATTTATTGGTCAACCCACTTTTACGTGAACATGTTCAATCATAAACCACGTTATATTCAATTCACTTTTAGTCGGAATCAATGTTGCCCAGTAAACTCGTTCAAAGTCAACTTTATTTTTACCGTAGAACCAAATGCATTGATTTTGGGATGTTTGTTTTTTGATGATAAATAAAAATTCGGTTTATAATTTGCTTGTAGCTCCTAACACTGCCTATAAAATTTATGTTACCCTTCTATTTTTTGGGATTGTATTATATAGTCTTTGGGTTGTATTATGTGAGATGCCAATGCTTTCTACCTGTACCTTTCTCTGCATATGGAGAAAAATTTCATTTGCTTCAATTCTAAGGTGTGCATATAGATTCCCATGTTTAATTTGAAGTGTGTATTGGTGCACGAGTTCAATCTTTGCTTCCATTCTTTGTTCAAGTATGTATGAACAAATATTCAAGCTCAATTGCAGGAACACCCGATTGCTTAAATTGGTGTTGTTTCCTGAATTTGAAACATGTGTTCTTGCGGTATAACTTTTTTCGATCAATTTTATATGCAAATTTTCAAGTTTAATTGCTGGAATATCCAATTGCTTAATGATAGAGACCTGAATGTGAGGGATAAGGGAAAAAGGGGCTATTATGTAATAAAGAGTATGGTGAGGTTATATGGTAAATAAAGATTTGATAGGATGCTTAGTTGGCAAGTTTGTTATGCCTTAGTAGTATAAAAAGTGAGGTGGGTAAGTTGTAATGGGAATGCGAGATTATTGCTAGGACCATTATGGTTAGGCAAAGAAAGAGTGTTCTCTTTCTTTGAAGGAGTTTTGCTCGGTGGGCGTTAGGATATTCATCCTTTTGCAGTTATCTTTCAATTACAGAAATAATATACTGTTATTCCACTATTTGTGCATTTTAATTCCCTTTTCTATCTTCTGTAAGTTGCGGCGATTCAGGCAAGCAACACTTAAGTTGGTGTCATTTCCTGAATTTGAAGTGTGCGTTCATGTCGTATGTATCAAACATATGGCAACGATTTTGAAACTCAGAAATTATGAAAGCTCCTGCGACTTTCAATGAATCTTAAGGCACTCTGTAGTATTATTTTTCTTCATGCATGACCAATGTGGTCATCAGTTTTTCTTTTCTCTAATCTCCAAAGTAAACGGTGCATAGGAAAATCTATGAACTGAATAGAATGGATGCTTAAAGTTTAATTTCGGAAAAAAAAAGTGTATTCCTGAAATCAGGCCTGTCCTGTGCAATTTTTTTTCTTTCATATGTTCACAGTGCACTAGCTGAATATTTCAATGTGGATAAATGTCTAAGGGTGTGTTTGGTATAGGAGAGAAATTGTGAAGAGAGAAGTATGTAAGAGAGAGTATAGGAAGAGAGAAATATGTGAGAAATAGAGTAGATTTGACATATTGTTTGGTATAAGAGAGAAATAGAGAAGAAAGAAGTTTGTTAAACTTTTGAAAAGACCAAAATATCCTTATACTAAACTTTAATATACAATTTTATTATATCTGAATTAATTTCTTATAAAAATTGATATAATTTTTTACATTAATTTAATTAAGAAATTAAGTTATTTTCTTAGAAAGAAATTTAATAACTTATTTACTTAATTAATTAATTATTTAAAATTTTATAATTTAGTGGGCTAAACTATTTTTTAATTTGGCTAAACTATTTCATTAGTTAACTAAATAGTAGTTTAATTTTATTTATTATAATATAAGAGGAATCAAAGAGGTTAAAGGCAGAGAGTTGAATTTTAGCTTCTTTGTTCACGTGCTACAACGAAAAACTTGAAAAAAACTTGAAAACAGTACAATATAATTGTATATCACCATGGACAATTTTGGAAAAGAGACAAAAGTTCATCCTTCTACTCCATTTCTTCGCGGTTCCAAAGAGAAATAAAATAGACGTAGGTCCCACAATATTTGGTCTCTCTCTTCAATCTCTCTTTTAAACCAAACAGGAGAAGGAGCTTATCTCTATCCAACTTCTCTCTTCCCTCTTTCTCTCTTTCTTATTTCTTCTCTACCAAACATAGTGTAAAAGAGGGAGAGATTAACATCTTCAGATGCTATATGCTTTCTGGTTCGGTTTTGTTTACCAAACAGGTATCTTAGTTGCTCAAGACTGCTAATTTTAATCTAATTGTTGCTTTACATGTCACAGGCTTTGCGGAGGAATGATACCGCAGATAAGTTCCAACAAATAACCGAAAAAATAGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGGTAATTTTATCGTACATTAGATATTCACTTGCCGTGATTTTGAATTTCTGCAAAGCGCTGTTTTTGCCAAGGTTAAAGGGAAGCATCAATTTACTGATAACTATGTTCCATATATTTTTTTCCGACTGTTTTAATCTCTTTCAGATTGAACTAGTGCACGCTCAGTTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATTTACAACTAGACTTGGATATAGCAGTAGCACAGAAAGATAAAGACCCTGATCCTGCTATACTCAAAAGACTCTCAGAGAAGTTGCACCTGAGGACTATGAATGATCTAAAGAAAGAGTCCACTGAATTACACGAATTGGTCATAACAAGCAACGGAGAACTAGGAGACAGTTTTGAAACCGTCTCATCCCTTCTTAGAAAACTGAAAGACTGCGTGCTCGCAGAAAATCCTGAGGTTGATACCTATGAGAACGAGAATGTTTCAATTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGGTGTCCTATATCTCTCGAACTGATGAAAGATCCTGTAATCGTCTCAACCGGTCAGGTATTATCCACAATCCTTTTTGTGCGAAACATTGTTCTGATGGTGTCAGTTATGATTATTGATGAAATTCCTACCTTATTTTGCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCTAAAACACAGCAGACACTTTTGCATACAGCCCTTACTCCTAACTACGTTTTGAAGAGTCTGATTGGTTTATGGTGTGATAGCAATGGTGTTGAACTACCAAAGAAGCAAGGGAGTTGCAGAACAAAGAAATCTGGAACCAGTCTTTCAGATTGTGACAGAACTGCTATCAAAGCTTTATTGGATAAGCTAACAAGTAATGATATTGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGAAATGCAGATAACCGAGTATGTATTGCCGAAGCAGGAGCAATACCGCTTCTCGTAGACTTGTTGTCTTCCACAGATCCTCGAACTCAGGAGCATGCGGTTACAGCACTTCTGAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTAGATGTTTTGAAAAACGGAAGCATGGAGGCGAGAGAAAACGCGGCTGCGACTCTCTTTAGTTTATCAGTTCTTGATGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCCATCCCGGCTCTTATAAAGTTACTTTGTGAAGGTACTCCAAGAGGCAAAAAAGATGCAGCTACTGCTATATTTAATCTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTTAAAGCCGGGATAGTTGCTCCTTTGATACGATTTATGAAGGATGCGGGCGGTGGGATGGTTGACGAAGCACTAGCTATAATGACAATCCTTGCAGGCCATCATGAAGGAAGGACAGCAATTGGTCAGGCCGAGCCAATCCCTATTTTAGTTGAGGTTATACGAACCGGATCACCACGCAACCGTGAGAATGCTGCTGCTGTTTTGTGGTTGGTATGCACGGGAGATCTCCTGCAATTGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAGGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATGTTAGAACTGTTGCAGCGAATCGAAGGGGAGGATAGTTTGCAAAATACCTAG

Protein sequence

>MS.gene34076.t1

MGGSENPKAMVVGRLADSIREISGLPECQNVCKKMYGNLIRRVKLLSPLFEELKDCDESLGDQEIEAFESLRVALDLTMTLLKSVNHGSKLYQALRRNDTADKFQQITEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDIAVAQKDKDPDPAILKRLSEKLHLRTMNDLKKESTELHELVITSNGELGDSFETVSSLLRKLKDCVLAENPEVDTYENENVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCDSNGVELPKKQGSCRTKKSGTSLSDCDRTAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSTDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAPLIRFMKDAGGGMVDEALAIMTILAGHHEGRTAIGQAEPIPILVEVIRTGSPRNRENAAAVLWLVCTGDLLQLKLAKEHGAEEALQGLSENGTDRAKRKAGSMLELLQRIEGEDSLQNT