Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02423.t1 | XP_003612065.1 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 4.60E-256 | 893.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02423.t1 | Q9FJZ3 | 66.3 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 6.3e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02423.t1 | G7KF03 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 3.3e-256 | 893.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02423 | MS.gene83173 | PPI |
| MS.gene006591 | MS.gene02423 | PPI |
| MS.gene065919 | MS.gene02423 | PPI |
| MS.gene031718 | MS.gene02423 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02423.t1 | MTR_5g020890 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
| MS.gene02423.t1 | MTR_3g112060 | 64.678 | 419 | 137 | 6 | 2 | 418 | 1 | 410 | 0.0 | 549 |
| MS.gene02423.t1 | MTR_1g085430 | 57.179 | 397 | 166 | 2 | 7 | 403 | 11 | 403 | 2.75e-165 | 471 |
| MS.gene02423.t1 | MTR_1g085420 | 57.252 | 393 | 164 | 2 | 11 | 403 | 15 | 403 | 2.72e-163 | 466 |
| MS.gene02423.t1 | MTR_1g085310 | 56.061 | 396 | 168 | 4 | 9 | 404 | 11 | 400 | 1.32e-162 | 464 |
| MS.gene02423.t1 | MTR_4g043760 | 57.182 | 369 | 156 | 2 | 31 | 399 | 34 | 400 | 2.62e-160 | 458 |
| MS.gene02423.t1 | MTR_1g085350 | 54.453 | 393 | 173 | 4 | 11 | 403 | 72 | 458 | 1.14e-154 | 446 |
| MS.gene02423.t1 | MTR_7g111740 | 54.987 | 371 | 162 | 3 | 29 | 399 | 60 | 425 | 7.97e-150 | 432 |
| MS.gene02423.t1 | MTR_7g073620 | 51.958 | 383 | 181 | 2 | 31 | 411 | 11 | 392 | 1.84e-146 | 423 |
| MS.gene02423.t1 | MTR_8g005670 | 52.455 | 387 | 181 | 2 | 24 | 408 | 56 | 441 | 3.84e-146 | 424 |
| MS.gene02423.t1 | MTR_7g073550 | 49.383 | 405 | 196 | 3 | 15 | 411 | 37 | 440 | 6.97e-144 | 419 |
| MS.gene02423.t1 | MTR_7g073550 | 50.914 | 383 | 185 | 2 | 31 | 411 | 58 | 439 | 8.85e-144 | 418 |
| MS.gene02423.t1 | MTR_1g085320 | 51.372 | 401 | 172 | 5 | 5 | 403 | 8 | 387 | 1.07e-143 | 416 |
| MS.gene02423.t1 | MTR_8g005270 | 51.421 | 387 | 185 | 2 | 24 | 408 | 39 | 424 | 9.33e-143 | 415 |
| MS.gene02423.t1 | MTR_8g006550 | 51.421 | 387 | 185 | 2 | 24 | 408 | 59 | 444 | 1.55e-142 | 415 |
| MS.gene02423.t1 | MTR_2g090390 | 46.791 | 374 | 195 | 2 | 30 | 399 | 39 | 412 | 2.53e-127 | 375 |
| MS.gene02423.t1 | MTR_4g078230 | 43.236 | 377 | 211 | 1 | 31 | 404 | 39 | 415 | 7.66e-118 | 351 |
| MS.gene02423.t1 | MTR_0005s0150 | 55.517 | 290 | 127 | 2 | 110 | 399 | 14 | 301 | 2.65e-117 | 345 |
| MS.gene02423.t1 | MTR_7g073320 | 33.333 | 117 | 64 | 1 | 295 | 411 | 17 | 119 | 5.40e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02423.t1 | AT5G66460 | 66.284 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 0.0 | 592 |
| MS.gene02423.t1 | AT3G10890 | 53.580 | 405 | 184 | 4 | 2 | 403 | 1 | 404 | 1.86e-168 | 479 |
| MS.gene02423.t1 | AT3G10900 | 54.568 | 405 | 177 | 6 | 2 | 402 | 1 | 402 | 1.65e-160 | 459 |
| MS.gene02423.t1 | AT5G01930 | 50.758 | 396 | 189 | 3 | 15 | 405 | 28 | 422 | 9.95e-148 | 428 |
| MS.gene02423.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 24 | 397 | 2.50e-134 | 392 |
| MS.gene02423.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 44 | 417 | 5.84e-134 | 392 |
| MS.gene02423.t1 | AT2G20680 | 46.133 | 375 | 200 | 1 | 30 | 402 | 41 | 415 | 6.81e-125 | 369 |
| MS.gene02423.t1 | AT4G28320 | 45.699 | 372 | 200 | 1 | 30 | 399 | 40 | 411 | 2.25e-124 | 368 |
| MS.gene02423.t1 | AT3G30540 | 48.333 | 360 | 140 | 7 | 2 | 355 | 1 | 320 | 5.84e-115 | 340 |
Find 90 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAATGAACAAATGTTTA+AGG | 0.138199 | 5.3:+12049241 | MS.gene02423:CDS |
| GGCATTCATTTCATGTTAAA+TGG | 0.157356 | 5.3:+12049038 | MS.gene02423:CDS |
| CCAATTCTAGTAGCAGAATT+TGG | 0.190502 | 5.3:+12051526 | MS.gene02423:CDS |
| GGAAAATCATTTAAAGATTC+AGG | 0.202299 | 5.3:+12051547 | MS.gene02423:CDS |
| TTGCATAAATCTTCCGAATA+AGG | 0.205768 | 5.3:-12051777 | None:intergenic |
| TTTAGGAACCCTGTTGTTAA+AGG | 0.213923 | 5.3:+12049692 | MS.gene02423:CDS |
| CAAATGGCTTTAATGCTTAC+TGG | 0.225498 | 5.3:+12049075 | MS.gene02423:CDS |
| GTGAACAATTATGAGAGTTT+TGG | 0.256433 | 5.3:+12049599 | MS.gene02423:CDS |
| CCAAATTCTGCTACTAGAAT+TGG | 0.275704 | 5.3:-12051526 | None:intergenic |
| CATTGATAGGAATCACTTAT+TGG | 0.286976 | 5.3:+12050870 | MS.gene02423:CDS |
| GTTAATAGTAGGATTGAATT+TGG | 0.289349 | 5.3:-12050938 | None:intergenic |
| GGAAATAGAGGAAGACAAAT+TGG | 0.293388 | 5.3:+12051865 | MS.gene02423:CDS |
| CATCAGATGATGATTTCTTT+AGG | 0.293457 | 5.3:+12049675 | MS.gene02423:CDS |
| TGATATTGAAACACTCTTGA+TGG | 0.294230 | 5.3:-12048977 | None:intergenic |
| CTCATAAACTATACCTTATT+CGG | 0.322951 | 5.3:+12051764 | MS.gene02423:CDS |
| CAGCGAGTGGAGCATTGTTC+TGG | 0.358097 | 5.3:+12051647 | MS.gene02423:CDS |
| ACACTCTTGATGGACCAAAA+TGG | 0.361828 | 5.3:-12048967 | None:intergenic |
| TTAAAGCCATTTGCATAGTA+AGG | 0.366576 | 5.3:-12049065 | None:intergenic |
| CTTTAGTGAAGTCCATTGAT+AGG | 0.370341 | 5.3:+12050857 | MS.gene02423:CDS |
| GATATATGCGTCTGCGAAAA+GGG | 0.371629 | 5.3:+12051618 | MS.gene02423:CDS |
| GACTTACTGTTGCTAGAACT+TGG | 0.374694 | 5.3:+12049171 | MS.gene02423:CDS |
| TGATCCATCTCAGAGATTCA+AGG | 0.381469 | 5.3:+12049115 | MS.gene02423:CDS |
| AACTGGGCTAGAAGTAATAA+TGG | 0.393024 | 5.3:+12049641 | MS.gene02423:CDS |
| AGCTCCCATGCCATGATTGT+TGG | 0.395030 | 5.3:-12050253 | None:intergenic |
| ATGTAGAAACCTTTAACAAC+AGG | 0.395168 | 5.3:-12049701 | None:intergenic |
| GATGCCTGGGATTCGATTGT+TGG | 0.395930 | 5.3:-12050983 | None:intergenic |
| TTTCTACATCAATCATGTTA+AGG | 0.399179 | 5.3:+12049715 | MS.gene02423:CDS |
| TCCTTCAGGAAGGACTATTC+AGG | 0.416711 | 5.3:+12050303 | MS.gene02423:CDS |
| GTCCATGGCTTGTTGCTTCA+CGG | 0.424293 | 5.3:-12049151 | None:intergenic |
| AGATATATGCGTCTGCGAAA+AGG | 0.430041 | 5.3:+12051617 | MS.gene02423:CDS |
| TTATTGGAAGCTGGACTTGA+AGG | 0.430930 | 5.3:+12050886 | MS.gene02423:CDS |
| AGGTGTACGTCAGATCCTTC+AGG | 0.440657 | 5.3:+12050289 | MS.gene02423:CDS |
| TATTGAAAAGTTGATCTCTC+TGG | 0.448941 | 5.3:-12051582 | None:intergenic |
| GGAAGAAGCAGTATGTGAAC+TGG | 0.448948 | 5.3:+12049624 | MS.gene02423:CDS |
| TGGAAAAGAGCTAGATTTAA+CGG | 0.453928 | 5.3:+12051820 | MS.gene02423:CDS |
| AGTCCTTTGCAATATTCTCC+TGG | 0.460187 | 5.3:+12049215 | MS.gene02423:CDS |
| GGATTGAATTTGGTCCTTTG+AGG | 0.460580 | 5.3:-12050928 | None:intergenic |
| TTCCACAGACTGTTCTCAAC+AGG | 0.466531 | 5.3:+12050194 | MS.gene02423:intron |
| GGAAATCCTTACTATGCAAA+TGG | 0.467525 | 5.3:+12049059 | MS.gene02423:CDS |
| ATAGGGCTGGATCACGGAAA+TGG | 0.471647 | 5.3:+12050831 | MS.gene02423:intron |
| CAATAAGTGATTCCTATCAA+TGG | 0.476985 | 5.3:-12050869 | None:intergenic |
| AATCCTACTATTAACAACAT+AGG | 0.484474 | 5.3:+12050946 | MS.gene02423:CDS |
| ACGGTTGCAAAATCGATGCC+TGG | 0.487815 | 5.3:-12050997 | None:intergenic |
| GTCCCTATGTTGTTAATAGT+AGG | 0.488737 | 5.3:-12050949 | None:intergenic |
| AGAACTTGGGCTTTCAGTGA+TGG | 0.491493 | 5.3:+12049185 | MS.gene02423:CDS |
| CAAAGATGATCCAACAATCA+TGG | 0.501682 | 5.3:+12050243 | MS.gene02423:CDS |
| AGGAATCACTTATTGGAAGC+TGG | 0.504001 | 5.3:+12050877 | MS.gene02423:CDS |
| GAGCTAGATTTAACGGAAGA+AGG | 0.504274 | 5.3:+12051827 | MS.gene02423:CDS |
| TTAGAGCATATTGTGCGTCT+AGG | 0.506071 | 5.3:-12051498 | None:intergenic |
| ACTTACTGTTGCTAGAACTT+GGG | 0.508850 | 5.3:+12049172 | MS.gene02423:CDS |
| GAATCTTTCGACGATGGCTA+TGG | 0.509733 | 5.3:+12051691 | MS.gene02423:CDS |
| TTCTGGCAACTTCTTACAGA+AGG | 0.511415 | 5.3:+12051664 | MS.gene02423:CDS |
| ATCCTACTATTAACAACATA+GGG | 0.515967 | 5.3:+12050947 | MS.gene02423:CDS |
| GAAACCTTGAATCTCTGAGA+TGG | 0.516474 | 5.3:-12049119 | None:intergenic |
| TTCCGTGAAGCAACAAGCCA+TGG | 0.522141 | 5.3:+12049149 | MS.gene02423:CDS |
| TCACGCGTTGGTGGAAATAG+AGG | 0.525388 | 5.3:+12051853 | MS.gene02423:CDS |
| GCAACTTCTTACAGAAGGAA+TGG | 0.529256 | 5.3:+12051669 | MS.gene02423:CDS |
| TATTGGAAGCTGGACTTGAA+GGG | 0.536131 | 5.3:+12050887 | MS.gene02423:CDS |
| AATATCAATGTAGAAGCTGC+TGG | 0.539763 | 5.3:+12048993 | MS.gene02423:CDS |
| CGGTTGCAAAATCGATGCCT+GGG | 0.543074 | 5.3:-12050996 | None:intergenic |
| CAGAACAATGCTCCACTCGC+TGG | 0.548466 | 5.3:-12051646 | None:intergenic |
| ATTGCCAACAATCGAATCCC+AGG | 0.555801 | 5.3:+12050979 | MS.gene02423:CDS |
| GATGGCTATGGAATATCGCT+TGG | 0.563874 | 5.3:+12051703 | MS.gene02423:CDS |
| TTCATTGTTATCCCGACCAA+TGG | 0.564049 | 5.3:+12051019 | MS.gene02423:CDS |
| ATGATCCAACAATCATGGCA+TGG | 0.566474 | 5.3:+12050248 | MS.gene02423:CDS |
| ATTTGTTCATTGTAGAAACC+AGG | 0.567175 | 5.3:-12049233 | None:intergenic |
| CGCATATATCTTGTAGTACA+CGG | 0.572125 | 5.3:-12051605 | None:intergenic |
| ATATCTGAGGCTAGAAAGCA+TGG | 0.573786 | 5.3:+12049554 | MS.gene02423:CDS |
| AATTAAGCTGATACTAAGCT+TGG | 0.574063 | 5.3:+12049577 | MS.gene02423:CDS |
| TGATCCAACAATCATGGCAT+GGG | 0.574244 | 5.3:+12050249 | MS.gene02423:CDS |
| AGAAGGTCTTCACGCGTTGG+TGG | 0.576835 | 5.3:+12051844 | MS.gene02423:CDS |
| TTCTAGCAACAGTAAGTCCA+TGG | 0.583102 | 5.3:-12049166 | None:intergenic |
| ACTTGGGCTTTCAGTGATGG+TGG | 0.586210 | 5.3:+12049188 | MS.gene02423:CDS |
| AAAAGGGGAGGTCCAGCGAG+TGG | 0.590584 | 5.3:+12051634 | MS.gene02423:CDS |
| GGAAGAAGGTCTTCACGCGT+TGG | 0.594873 | 5.3:+12051841 | MS.gene02423:CDS |
| TTGATTATAGGGCTGGATCA+CGG | 0.597155 | 5.3:+12050825 | MS.gene02423:intron |
| ATGGACAATCAACACCTCAA+AGG | 0.598022 | 5.3:+12050914 | MS.gene02423:CDS |
| AATGTAGAAGCTGCTGGTGA+TGG | 0.601670 | 5.3:+12048999 | MS.gene02423:CDS |
| GAAGAAGCAGTATGTGAACT+GGG | 0.610382 | 5.3:+12049625 | MS.gene02423:CDS |
| ACCTGAATAGTCCTTCCTGA+AGG | 0.619157 | 5.3:-12050304 | None:intergenic |
| ATATATGCGTCTGCGAAAAG+GGG | 0.632807 | 5.3:+12051619 | MS.gene02423:CDS |
| TGTAGAAACCTTTAACAACA+GGG | 0.641407 | 5.3:-12049700 | None:intergenic |
| TATGCGTCTGCGAAAAGGGG+AGG | 0.642345 | 5.3:+12051622 | MS.gene02423:CDS |
| AAACCAGGAGAATATTGCAA+AGG | 0.645714 | 5.3:-12049218 | None:intergenic |
| TTGGTCGGGATAACAATGAA+CGG | 0.658478 | 5.3:-12051016 | None:intergenic |
| GAAGGATCTGACGTACACCT+AGG | 0.660094 | 5.3:-12050286 | None:intergenic |
| GGGAGCTTATGAATGAACCT+AGG | 0.661088 | 5.3:+12050269 | MS.gene02423:CDS |
| GGAATGGAATCTTTCGACGA+TGG | 0.663000 | 5.3:+12051685 | MS.gene02423:CDS |
| AGATCGCTAATGAACGACGA+TGG | 0.665356 | 5.3:+12051800 | MS.gene02423:CDS |
| GTACGTCAGATCCTTCAGGA+AGG | 0.713213 | 5.3:+12050293 | MS.gene02423:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATAATATATACG+AGG | + | chr5.3:12050116-12050135 | MS.gene02423:intron | 10.0% |
| !! | ATTGTAAACAAATTAAAAAT+GGG | - | chr5.3:12051110-12051129 | None:intergenic | 10.0% |
| !!! | TTAAAAATTAATTTTGCATT+TGG | - | chr5.3:12050065-12050084 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAAAGAAAAAG+GGG | - | chr5.3:12050379-12050398 | None:intergenic | 15.0% |
| !! | AATGATTTAACAATTATGAT+AGG | - | chr5.3:12050545-12050564 | None:intergenic | 15.0% |
| !! | CAAAAAGAAAAAAAGAAAAA+GGG | - | chr5.3:12050380-12050399 | None:intergenic | 15.0% |
| !! | CATTGTAAACAAATTAAAAA+TGG | - | chr5.3:12051111-12051130 | None:intergenic | 15.0% |
| !! | GTTCAATTTAATATATCATT+TGG | + | chr5.3:12049468-12049487 | MS.gene02423:intron | 15.0% |
| !! | TAATTGAAGTATAATTTCTT+TGG | - | chr5.3:12050478-12050497 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAAAAGAAAA+AGG | - | chr5.3:12050381-12050400 | None:intergenic | 15.0% |
| !! | TGAATATGAAAATTATCATA+TGG | + | chr5.3:12049780-12049799 | MS.gene02423:intron | 15.0% |
| !! | TTAACTCATAAATAAGAATA+AGG | - | chr5.3:12049973-12049992 | None:intergenic | 15.0% |
| !!! | ACAATTTTCAACTTTTTTTA+CGG | - | chr5.3:12049408-12049427 | None:intergenic | 15.0% |
| !!! | ATTATGAACATTTTTTACAT+AGG | + | chr5.3:12050516-12050535 | MS.gene02423:intron | 15.0% |
| !!! | TATTTTTCATAAACTATTCA+AGG | + | chr5.3:12049269-12049288 | MS.gene02423:intron | 15.0% |
| !! | ACTGTTTAACATTTGATTAT+AGG | + | chr5.3:12050813-12050832 | MS.gene02423:intron | 20.0% |
| !! | CCTAATATGTAAAAACTAAA+AGG | - | chr5.3:12049840-12049859 | None:intergenic | 20.0% |
| !! | CTGTTTAACATTTGATTATA+GGG | + | chr5.3:12050814-12050833 | MS.gene02423:intron | 20.0% |
| !! | TAAAGTCTTACCAATATTAT+TGG | + | chr5.3:12050698-12050717 | MS.gene02423:intron | 20.0% |
| !!! | AAATTAATTTTGCATTTGGA+TGG | - | chr5.3:12050061-12050080 | None:intergenic | 20.0% |
| !!! | ACTATATTTTTAGTTACCAT+TGG | - | chr5.3:12051038-12051057 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACAATGCAATTT+TGG | + | chr5.3:12051117-12051136 | MS.gene02423:intron | 20.0% |
| !!! | ATTTTTTTGTCTTAAACTTC+CGG | + | chr5.3:12049430-12049449 | MS.gene02423:intron | 20.0% |
| !!! | CCTTTTAGTTTTTACATATT+AGG | + | chr5.3:12049837-12049856 | MS.gene02423:intron | 20.0% |
| !!! | TTTGATGTAATTTATTTTCC+TGG | + | chr5.3:12050168-12050187 | MS.gene02423:intron | 20.0% |
| !!! | TTTGTTTACAATGCAATTTT+GGG | + | chr5.3:12051118-12051137 | MS.gene02423:intron | 20.0% |
| !!! | TTTTGCTTTGTTATTTCTTT+TGG | + | chr5.3:12048944-12048963 | MS.gene02423:CDS | 20.0% |
| ! | AATCCTACTATTAACAACAT+AGG | + | chr5.3:12050946-12050965 | MS.gene02423:CDS | 25.0% |
| ! | ATCCTACTATTAACAACATA+GGG | + | chr5.3:12050947-12050966 | MS.gene02423:CDS | 25.0% |
| ! | CCAAATGTACATGATTTAAT+TGG | + | chr5.3:12051349-12051368 | MS.gene02423:intron | 25.0% |
| ! | CCAATTAAATCATGTACATT+TGG | - | chr5.3:12051352-12051371 | None:intergenic | 25.0% |
| ! | CCAGTTTACGATTAAAAAAT+AGG | - | chr5.3:12050648-12050667 | None:intergenic | 25.0% |
| ! | CTACAATGAACAAATGTTTA+AGG | + | chr5.3:12049241-12049260 | MS.gene02423:CDS | 25.0% |
| ! | CTCATAAACTATACCTTATT+CGG | + | chr5.3:12051764-12051783 | MS.gene02423:CDS | 25.0% |
| ! | GGAAAATCATTTAAAGATTC+AGG | + | chr5.3:12051547-12051566 | MS.gene02423:CDS | 25.0% |
| ! | GTTAATAGTAGGATTGAATT+TGG | - | chr5.3:12050941-12050960 | None:intergenic | 25.0% |
| ! | GTTTCTACTACCAATAATAT+TGG | - | chr5.3:12050711-12050730 | None:intergenic | 25.0% |
| ! | TTTCTACATCAATCATGTTA+AGG | + | chr5.3:12049715-12049734 | MS.gene02423:CDS | 25.0% |
| !! | GAAACTTTTGCAATATGATT+TGG | + | chr5.3:12050726-12050745 | MS.gene02423:intron | 25.0% |
| !! | TTGTATCTGATTTTCTATGT+TGG | + | chr5.3:12049505-12049524 | MS.gene02423:intron | 25.0% |
| !!! | CCTATTTTTTAATCGTAAAC+TGG | + | chr5.3:12050645-12050664 | MS.gene02423:intron | 25.0% |
| !!! | TATTTTTAGTTACCATTGGT+CGG | - | chr5.3:12051034-12051053 | None:intergenic | 25.0% |
| AAGAAAAAAAGAAAAAGGGG+TGG | - | chr5.3:12050376-12050395 | None:intergenic | 30.0% | |
| AAGTGAATTTGACAGAATCA+TGG | - | chr5.3:12051324-12051343 | None:intergenic | 30.0% | |
| AATTAAGCTGATACTAAGCT+TGG | + | chr5.3:12049577-12049596 | MS.gene02423:CDS | 30.0% | |
| AGATTAATTGGTTGTTGGAT+CGG | - | chr5.3:12050022-12050041 | None:intergenic | 30.0% | |
| ATGTAGAAACCTTTAACAAC+AGG | - | chr5.3:12049704-12049723 | None:intergenic | 30.0% | |
| ATTTGTTCATTGTAGAAACC+AGG | - | chr5.3:12049236-12049255 | None:intergenic | 30.0% | |
| CAATAAGTGATTCCTATCAA+TGG | - | chr5.3:12050872-12050891 | None:intergenic | 30.0% | |
| CATCAGATGATGATTTCTTT+AGG | + | chr5.3:12049675-12049694 | MS.gene02423:CDS | 30.0% | |
| CATTGATAGGAATCACTTAT+TGG | + | chr5.3:12050870-12050889 | MS.gene02423:CDS | 30.0% | |
| GGCATTCATTTCATGTTAAA+TGG | + | chr5.3:12049038-12049057 | MS.gene02423:CDS | 30.0% | |
| TAAATTGAACAATTTCCGCA+GGG | - | chr5.3:12049458-12049477 | None:intergenic | 30.0% | |
| TAATCCAAAGTTAGATTACG+AGG | + | chr5.3:12049355-12049374 | MS.gene02423:intron | 30.0% | |
| TAATCTAACTTTGGATTACG+AGG | - | chr5.3:12049353-12049372 | None:intergenic | 30.0% | |
| TGATATTGAAACACTCTTGA+TGG | - | chr5.3:12048980-12048999 | None:intergenic | 30.0% | |
| TGGAAAAGAGCTAGATTTAA+CGG | + | chr5.3:12051820-12051839 | MS.gene02423:CDS | 30.0% | |
| TGTAGAAACCTTTAACAACA+GGG | - | chr5.3:12049703-12049722 | None:intergenic | 30.0% | |
| TTAAAGCCATTTGCATAGTA+AGG | - | chr5.3:12049068-12049087 | None:intergenic | 30.0% | |
| TTAAATTGAACAATTTCCGC+AGG | - | chr5.3:12049459-12049478 | None:intergenic | 30.0% | |
| TTAACATTTGATTATAGGGC+TGG | + | chr5.3:12050818-12050837 | MS.gene02423:intron | 30.0% | |
| TTGCATAAATCTTCCGAATA+AGG | - | chr5.3:12051780-12051799 | None:intergenic | 30.0% | |
| TTTACCTCGTAATCTAACTT+TGG | - | chr5.3:12049362-12049381 | None:intergenic | 30.0% | |
| TTTCTTTGATTGCACAAACA+GGG | + | chr5.3:12051414-12051433 | MS.gene02423:intron | 30.0% | |
| ! | ATCTGATTTTCTATGTTGGT+TGG | + | chr5.3:12049509-12049528 | MS.gene02423:intron | 30.0% |
| ! | GTGAACAATTATGAGAGTTT+TGG | + | chr5.3:12049599-12049618 | MS.gene02423:CDS | 30.0% |
| ! | TAATTTTGCATTTGGATGGT+GGG | - | chr5.3:12050057-12050076 | None:intergenic | 30.0% |
| ! | TATTGAAAAGTTGATCTCTC+TGG | - | chr5.3:12051585-12051604 | None:intergenic | 30.0% |
| ! | TTAATTTTGCATTTGGATGG+TGG | - | chr5.3:12050058-12050077 | None:intergenic | 30.0% |
| ! | TTTTCTTTGATTGCACAAAC+AGG | + | chr5.3:12051413-12051432 | MS.gene02423:intron | 30.0% |
| !! | AACAATTATGAGAGTTTTGG+AGG | + | chr5.3:12049602-12049621 | MS.gene02423:CDS | 30.0% |
| !! | ATTAGACCTCTGAGATTAAT+TGG | - | chr5.3:12050034-12050053 | None:intergenic | 30.0% |
| !! | GTTGGATTTTGTTATATCTG+AGG | + | chr5.3:12049541-12049560 | MS.gene02423:CDS | 30.0% |
| !!! | ACAATTATGAGAGTTTTGGA+GGG | + | chr5.3:12049603-12049622 | MS.gene02423:CDS | 30.0% |
| !!! | AGGAGTATAGTTTTGTTGTT+AGG | + | chr5.3:12050136-12050155 | MS.gene02423:intron | 30.0% |
| !!! | ATTTTTAGTTACCATTGGTC+GGG | - | chr5.3:12051033-12051052 | None:intergenic | 30.0% |
| !!! | GTTATTTCTTTTGGCCATTT+TGG | + | chr5.3:12048953-12048972 | MS.gene02423:CDS | 30.0% |
| AAACCAGGAGAATATTGCAA+AGG | - | chr5.3:12049221-12049240 | None:intergenic | 35.0% | |
| AATATCAATGTAGAAGCTGC+TGG | + | chr5.3:12048993-12049012 | MS.gene02423:CDS | 35.0% | |
| ACAGTCAATGAGAGGAATAA+AGG | - | chr5.3:12050416-12050435 | None:intergenic | 35.0% | |
| ACTTACTGTTGCTAGAACTT+GGG | + | chr5.3:12049172-12049191 | MS.gene02423:CDS | 35.0% | |
| CAAAGATGATCCAACAATCA+TGG | + | chr5.3:12050243-12050262 | MS.gene02423:CDS | 35.0% | |
| CAACAACCAATTAATCTCAG+AGG | + | chr5.3:12050025-12050044 | MS.gene02423:intron | 35.0% | |
| CCAAATTCTGCTACTAGAAT+TGG | - | chr5.3:12051529-12051548 | None:intergenic | 35.0% | |
| CCAATTCTAGTAGCAGAATT+TGG | + | chr5.3:12051526-12051545 | MS.gene02423:CDS | 35.0% | |
| CGCATATATCTTGTAGTACA+CGG | - | chr5.3:12051608-12051627 | None:intergenic | 35.0% | |
| CTTTAGTGAAGTCCATTGAT+AGG | + | chr5.3:12050857-12050876 | MS.gene02423:CDS | 35.0% | |
| GGAAATAGAGGAAGACAAAT+TGG | + | chr5.3:12051865-12051884 | MS.gene02423:CDS | 35.0% | |
| GGAAATCCTTACTATGCAAA+TGG | + | chr5.3:12049059-12049078 | MS.gene02423:CDS | 35.0% | |
| GTCCCTATGTTGTTAATAGT+AGG | - | chr5.3:12050952-12050971 | None:intergenic | 35.0% | |
| TATAGCATGTCCTTGAAATC+AGG | - | chr5.3:12050773-12050792 | None:intergenic | 35.0% | |
| TCTTAACCATCCTTGAGAAA+GGG | + | chr5.3:12049326-12049345 | MS.gene02423:intron | 35.0% | |
| TGGACAAGTTTCACAAATCA+CGG | + | chr5.3:12050746-12050765 | MS.gene02423:intron | 35.0% | |
| TTTAGGAACCCTGTTGTTAA+AGG | + | chr5.3:12049692-12049711 | MS.gene02423:CDS | 35.0% | |
| ! | AAATGGGAGTTCTCGAATTT+TGG | - | chr5.3:12051094-12051113 | None:intergenic | 35.0% |
| ! | AACAGGTACAACAGTTTTAC+TGG | + | chr5.3:12050211-12050230 | MS.gene02423:CDS | 35.0% |
| ! | AACTGGGCTAGAAGTAATAA+TGG | + | chr5.3:12049641-12049660 | MS.gene02423:CDS | 35.0% |
| ! | AATGGGAGTTCTCGAATTTT+GGG | - | chr5.3:12051093-12051112 | None:intergenic | 35.0% |
| ! | AGCTTGCATTTTTGAACAAC+TGG | + | chr5.3:12051461-12051480 | MS.gene02423:CDS | 35.0% |
| ! | GAACTTCTTTTGTCTTTGCT+TGG | + | chr5.3:12049750-12049769 | MS.gene02423:intron | 35.0% |
| !! | CAAATGGCTTTAATGCTTAC+TGG | + | chr5.3:12049075-12049094 | MS.gene02423:CDS | 35.0% |
| !! | CTCTGAGATTAATTGGTTGT+TGG | - | chr5.3:12050027-12050046 | None:intergenic | 35.0% |
| !! | TCTATGTTGGTTGGTTTGAA+GGG | + | chr5.3:12049518-12049537 | MS.gene02423:intron | 35.0% |
| !! | TTCTATGTTGGTTGGTTTGA+AGG | + | chr5.3:12049517-12049536 | MS.gene02423:intron | 35.0% |
| AGATATATGCGTCTGCGAAA+AGG | + | chr5.3:12051617-12051636 | MS.gene02423:CDS | 40.0% | |
| AGGAATCACTTATTGGAAGC+TGG | + | chr5.3:12050877-12050896 | MS.gene02423:CDS | 40.0% | |
| AGTCCTTTGCAATATTCTCC+TGG | + | chr5.3:12049215-12049234 | MS.gene02423:CDS | 40.0% | |
| ATATATGCGTCTGCGAAAAG+GGG | + | chr5.3:12051619-12051638 | MS.gene02423:CDS | 40.0% | |
| ATGATCCAACAATCATGGCA+TGG | + | chr5.3:12050248-12050267 | MS.gene02423:CDS | 40.0% | |
| ATGGACAATCAACACCTCAA+AGG | + | chr5.3:12050914-12050933 | MS.gene02423:CDS | 40.0% | |
| CATCTATCACAGTCAATGAG+AGG | - | chr5.3:12050424-12050443 | None:intergenic | 40.0% | |
| GAAGAAGCAGTATGTGAACT+GGG | + | chr5.3:12049625-12049644 | MS.gene02423:CDS | 40.0% | |
| GACTTACTGTTGCTAGAACT+TGG | + | chr5.3:12049171-12049190 | MS.gene02423:CDS | 40.0% | |
| GAGCTAGATTTAACGGAAGA+AGG | + | chr5.3:12051827-12051846 | MS.gene02423:CDS | 40.0% | |
| GATATATGCGTCTGCGAAAA+GGG | + | chr5.3:12051618-12051637 | MS.gene02423:CDS | 40.0% | |
| GCAACTTCTTACAGAAGGAA+TGG | + | chr5.3:12051669-12051688 | MS.gene02423:CDS | 40.0% | |
| GGACAAGTTTCACAAATCAC+GGG | + | chr5.3:12050747-12050766 | MS.gene02423:intron | 40.0% | |
| GGATTGAATTTGGTCCTTTG+AGG | - | chr5.3:12050931-12050950 | None:intergenic | 40.0% | |
| GTCTTAACCATCCTTGAGAA+AGG | + | chr5.3:12049325-12049344 | MS.gene02423:intron | 40.0% | |
| TATTGGAAGCTGGACTTGAA+GGG | + | chr5.3:12050887-12050906 | MS.gene02423:CDS | 40.0% | |
| TGATCCAACAATCATGGCAT+GGG | + | chr5.3:12050249-12050268 | MS.gene02423:CDS | 40.0% | |
| TGATCCATCTCAGAGATTCA+AGG | + | chr5.3:12049115-12049134 | MS.gene02423:CDS | 40.0% | |
| TTAGAGCATATTGTGCGTCT+AGG | - | chr5.3:12051501-12051520 | None:intergenic | 40.0% | |
| TTATTGGAAGCTGGACTTGA+AGG | + | chr5.3:12050886-12050905 | MS.gene02423:CDS | 40.0% | |
| TTCATTGTTATCCCGACCAA+TGG | + | chr5.3:12051019-12051038 | MS.gene02423:CDS | 40.0% | |
| TTCTAGCAACAGTAAGTCCA+TGG | - | chr5.3:12049169-12049188 | None:intergenic | 40.0% | |
| TTCTGGCAACTTCTTACAGA+AGG | + | chr5.3:12051664-12051683 | MS.gene02423:CDS | 40.0% | |
| TTGATTATAGGGCTGGATCA+CGG | + | chr5.3:12050825-12050844 | MS.gene02423:intron | 40.0% | |
| TTGGTCGGGATAACAATGAA+CGG | - | chr5.3:12051019-12051038 | None:intergenic | 40.0% | |
| ! | ACACTCTTGATGGACCAAAA+TGG | - | chr5.3:12048970-12048989 | None:intergenic | 40.0% |
| ! | ATATCTGAGGCTAGAAAGCA+TGG | + | chr5.3:12049554-12049573 | MS.gene02423:CDS | 40.0% |
| ! | GAAACCTTGAATCTCTGAGA+TGG | - | chr5.3:12049122-12049141 | None:intergenic | 40.0% |
| ! | TGAGAGGAATAAAGGTGTAG+TGG | - | chr5.3:12050408-12050427 | None:intergenic | 40.0% |
| !! | CTATGTTGGTTGGTTTGAAG+GGG | + | chr5.3:12049519-12049538 | MS.gene02423:intron | 40.0% |
| !!! | GATGGTTTTGTGAGAACAAG+AGG | + | chr5.3:12049017-12049036 | MS.gene02423:CDS | 40.0% |
| AAACAGTCAGACTCAGCTCA+TGG | - | chr5.3:12050800-12050819 | None:intergenic | 45.0% | |
| AAATCACGGGCCTGATTTCA+AGG | + | chr5.3:12050760-12050779 | MS.gene02423:intron | 45.0% | |
| AATGTAGAAGCTGCTGGTGA+TGG | + | chr5.3:12048999-12049018 | MS.gene02423:CDS | 45.0% | |
| ACCTGAATAGTCCTTCCTGA+AGG | - | chr5.3:12050307-12050326 | None:intergenic | 45.0% | |
| AGAACTTGGGCTTTCAGTGA+TGG | + | chr5.3:12049185-12049204 | MS.gene02423:CDS | 45.0% | |
| AGATCGCTAATGAACGACGA+TGG | + | chr5.3:12051800-12051819 | MS.gene02423:CDS | 45.0% | |
| ATTACGAGGACCCTTTCTCA+AGG | - | chr5.3:12049339-12049358 | None:intergenic | 45.0% | |
| ATTGCCAACAATCGAATCCC+AGG | + | chr5.3:12050979-12050998 | MS.gene02423:CDS | 45.0% | |
| GAATCTTTCGACGATGGCTA+TGG | + | chr5.3:12051691-12051710 | MS.gene02423:CDS | 45.0% | |
| GACAGAATCATGGTGAGCTA+TGG | - | chr5.3:12051314-12051333 | None:intergenic | 45.0% | |
| GATGGCTATGGAATATCGCT+TGG | + | chr5.3:12051703-12051722 | MS.gene02423:CDS | 45.0% | |
| GGAAGAAGCAGTATGTGAAC+TGG | + | chr5.3:12049624-12049643 | MS.gene02423:CDS | 45.0% | |
| GGAATGGAATCTTTCGACGA+TGG | + | chr5.3:12051685-12051704 | MS.gene02423:CDS | 45.0% | |
| GGGAGCTTATGAATGAACCT+AGG | + | chr5.3:12050269-12050288 | MS.gene02423:CDS | 45.0% | |
| TACCTGTTGAGAACAGTCTG+TGG | - | chr5.3:12050199-12050218 | None:intergenic | 45.0% | |
| TCCTTCAGGAAGGACTATTC+AGG | + | chr5.3:12050303-12050322 | MS.gene02423:CDS | 45.0% | |
| TTCCACAGACTGTTCTCAAC+AGG | + | chr5.3:12050194-12050213 | MS.gene02423:intron | 45.0% | |
| ! | GCTGGACTTGAAGGGTTTTA+TGG | + | chr5.3:12050895-12050914 | MS.gene02423:CDS | 45.0% |
| ACGGTTGCAAAATCGATGCC+TGG | - | chr5.3:12051000-12051019 | None:intergenic | 50.0% | |
| ACTTGGGCTTTCAGTGATGG+TGG | + | chr5.3:12049188-12049207 | MS.gene02423:CDS | 50.0% | |
| AGCTCCCATGCCATGATTGT+TGG | - | chr5.3:12050256-12050275 | None:intergenic | 50.0% | |
| AGGTGTACGTCAGATCCTTC+AGG | + | chr5.3:12050289-12050308 | MS.gene02423:CDS | 50.0% | |
| ATAGGGCTGGATCACGGAAA+TGG | + | chr5.3:12050831-12050850 | MS.gene02423:intron | 50.0% | |
| CGGTTGCAAAATCGATGCCT+GGG | - | chr5.3:12050999-12051018 | None:intergenic | 50.0% | |
| CTTAAACTTCCGGTTCCCTG+CGG | + | chr5.3:12049440-12049459 | MS.gene02423:intron | 50.0% | |
| GAACAATTTCCGCAGGGAAC+CGG | - | chr5.3:12049452-12049471 | None:intergenic | 50.0% | |
| GAACAGTCTGTGGAAGTTCC+AGG | - | chr5.3:12050189-12050208 | None:intergenic | 50.0% | |
| GAAGGATCTGACGTACACCT+AGG | - | chr5.3:12050289-12050308 | None:intergenic | 50.0% | |
| GATGCCTGGGATTCGATTGT+TGG | - | chr5.3:12050986-12051005 | None:intergenic | 50.0% | |
| GTACGTCAGATCCTTCAGGA+AGG | + | chr5.3:12050293-12050312 | MS.gene02423:CDS | 50.0% | |
| TTCCGTGAAGCAACAAGCCA+TGG | + | chr5.3:12049149-12049168 | MS.gene02423:CDS | 50.0% | |
| ! | TCACGCGTTGGTGGAAATAG+AGG | + | chr5.3:12051853-12051872 | MS.gene02423:CDS | 50.0% |
| !! | GTCCATGGCTTGTTGCTTCA+CGG | - | chr5.3:12049154-12049173 | None:intergenic | 50.0% |
| !! | GTTGGTTGGTTTGAAGGGGT+TGG | + | chr5.3:12049523-12049542 | MS.gene02423:intron | 50.0% |
| AGAAGGTCTTCACGCGTTGG+TGG | + | chr5.3:12051844-12051863 | MS.gene02423:CDS | 55.0% | |
| CAGAACAATGCTCCACTCGC+TGG | - | chr5.3:12051649-12051668 | None:intergenic | 55.0% | |
| CGAGGACCCTTTCTCAAGGA+TGG | - | chr5.3:12049335-12049354 | None:intergenic | 55.0% | |
| GGAAGAAGGTCTTCACGCGT+TGG | + | chr5.3:12051841-12051860 | MS.gene02423:CDS | 55.0% | |
| TATGCGTCTGCGAAAAGGGG+AGG | + | chr5.3:12051622-12051641 | MS.gene02423:CDS | 55.0% | |
| !! | CAGCGAGTGGAGCATTGTTC+TGG | + | chr5.3:12051647-12051666 | MS.gene02423:CDS | 55.0% |
| AAAAGGGGAGGTCCAGCGAG+TGG | + | chr5.3:12051634-12051653 | MS.gene02423:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12048933 | 12051894 | 12048933 | ID=MS.gene02423 |
| chr5.3 | mRNA | 12048933 | 12051894 | 12048933 | ID=MS.gene02423.t1;Parent=MS.gene02423 |
| chr5.3 | exon | 12048933 | 12049262 | 12048933 | ID=MS.gene02423.t1.exon1;Parent=MS.gene02423.t1 |
| chr5.3 | CDS | 12048933 | 12049262 | 12048933 | ID=cds.MS.gene02423.t1;Parent=MS.gene02423.t1 |
| chr5.3 | exon | 12049539 | 12049736 | 12049539 | ID=MS.gene02423.t1.exon2;Parent=MS.gene02423.t1 |
| chr5.3 | CDS | 12049539 | 12049736 | 12049539 | ID=cds.MS.gene02423.t1;Parent=MS.gene02423.t1 |
| chr5.3 | exon | 12050202 | 12050324 | 12050202 | ID=MS.gene02423.t1.exon3;Parent=MS.gene02423.t1 |
| chr5.3 | CDS | 12050202 | 12050324 | 12050202 | ID=cds.MS.gene02423.t1;Parent=MS.gene02423.t1 |
| chr5.3 | exon | 12050835 | 12051040 | 12050835 | ID=MS.gene02423.t1.exon4;Parent=MS.gene02423.t1 |
| chr5.3 | CDS | 12050835 | 12051040 | 12050835 | ID=cds.MS.gene02423.t1;Parent=MS.gene02423.t1 |
| chr5.3 | exon | 12051435 | 12051894 | 12051435 | ID=MS.gene02423.t1.exon5;Parent=MS.gene02423.t1 |
| chr5.3 | CDS | 12051435 | 12051894 | 12051435 | ID=cds.MS.gene02423.t1;Parent=MS.gene02423.t1 |
| Gene Sequence |
| Protein sequence |
