Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024985.t1 | KEH27308.1 | 95.6 | 992 | 26 | 2 | 6 | 980 | 87 | 1077 | 0.00E+00 | 1877.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024985.t1 | Q8VY06 | 77.3 | 979 | 204 | 4 | 18 | 979 | 101 | 1078 | 0.0e+00 | 1540.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024985.t1 | A0A072UDY2 | 95.6 | 992 | 26 | 2 | 6 | 980 | 87 | 1077 | 0.0e+00 | 1877.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92382 | MS.gene024985 | PPI |
| MS.gene024985 | MS.gene024987 | PPI |
| MS.gene046969 | MS.gene024985 | PPI |
| MS.gene024987 | MS.gene024985 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024985.t1 | MTR_5g004680 | 95.565 | 992 | 26 | 2 | 6 | 980 | 87 | 1077 | 0.0 | 1945 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024985.t1 | AT1G49630 | 77.426 | 979 | 203 | 5 | 18 | 979 | 101 | 1078 | 0.0 | 1592 |
| MS.gene024985.t1 | AT1G49630 | 77.426 | 979 | 203 | 5 | 18 | 979 | 101 | 1078 | 0.0 | 1592 |
| MS.gene024985.t1 | AT1G49630 | 77.426 | 979 | 203 | 5 | 18 | 979 | 101 | 1078 | 0.0 | 1592 |
| MS.gene024985.t1 | AT3G19170 | 76.417 | 988 | 212 | 5 | 11 | 980 | 96 | 1080 | 0.0 | 1587 |
| MS.gene024985.t1 | AT3G19170 | 74.393 | 988 | 221 | 7 | 11 | 980 | 96 | 1069 | 0.0 | 1530 |
| MS.gene024985.t1 | AT1G49630 | 76.973 | 925 | 195 | 5 | 72 | 979 | 7 | 930 | 0.0 | 1494 |
| MS.gene024985.t1 | AT1G49630 | 74.879 | 824 | 189 | 5 | 173 | 979 | 6 | 828 | 0.0 | 1287 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAACTAAACCAATTAAT+TGG | 0.112942 | 5.3:+299532 | MS.gene024985:CDS |
| CCATGTATTGCTAATGTATT+TGG | 0.135870 | 5.3:-302446 | None:intergenic |
| AATAATAATGATGATGATTT+TGG | 0.158611 | 5.3:+295543 | None:intergenic |
| CCATTGCTACACCAAATATT+TGG | 0.196069 | 5.3:+301741 | MS.gene024985:CDS |
| GTTTGCATATTTAGGGTAAA+TGG | 0.198410 | 5.3:+298355 | MS.gene024985:intron |
| AAGATGAATTTCTCTATTAA+TGG | 0.198802 | 5.3:-298477 | None:intergenic |
| AGTCTAACGTTCCAAATATT+TGG | 0.199487 | 5.3:-301752 | None:intergenic |
| CAGTATGTTGCGGTATATAC+TGG | 0.218929 | 5.3:+302942 | MS.gene024985:intron |
| GGAACATGAATAGGTTCTTT+AGG | 0.245740 | 5.3:-298818 | None:intergenic |
| ATCCCCAATGGTCCCGATTA+TGG | 0.250985 | 5.3:-302727 | None:intergenic |
| TCAACGCCATATGTGTTATC+TGG | 0.257591 | 5.3:-296322 | None:intergenic |
| TTCCTTTGGTACCACTGTTT+TGG | 0.261312 | 5.3:+299039 | MS.gene024985:CDS |
| AGCATATGGTTTCCCTTAAC+TGG | 0.266266 | 5.3:+297892 | MS.gene024985:CDS |
| GATGCTGGTTATAAGCTTAA+TGG | 0.276272 | 5.3:+302406 | MS.gene024985:CDS |
| GTTCAACCTTTGATTCGTTT+GGG | 0.285001 | 5.3:-297797 | None:intergenic |
| TGAACATCCTCGACACATTT+AGG | 0.286941 | 5.3:-295982 | None:intergenic |
| ATCCCAGCAATTCACGGATT+TGG | 0.290483 | 5.3:+296700 | MS.gene024985:CDS |
| GGTTCAACCTTTGATTCGTT+TGG | 0.294249 | 5.3:-297798 | None:intergenic |
| TCCCAATTAATTGGTTTAGT+TGG | 0.315523 | 5.3:-299534 | None:intergenic |
| AAAAGAGAATTGATCAAGAT+TGG | 0.323255 | 5.3:+301570 | MS.gene024985:CDS |
| TCTGAAGATATCACTTATAA+AGG | 0.325491 | 5.3:+296048 | MS.gene024985:CDS |
| TTTCTACAGGTTAATTATGT+TGG | 0.327149 | 5.3:+302364 | MS.gene024985:intron |
| GAACATGAATAGGTTCTTTA+GGG | 0.335851 | 5.3:-298817 | None:intergenic |
| TAGCTCGGTTTCCAAGTCTA+AGG | 0.341772 | 5.3:-297931 | None:intergenic |
| AAACCAAATCCGTGAATTGC+TGG | 0.342696 | 5.3:-296703 | None:intergenic |
| TTTAAAGCTTCTGGTGGATC+AGG | 0.343266 | 5.3:-298764 | None:intergenic |
| ATGGAAGCAGTTAAGGATAA+AGG | 0.351452 | 5.3:+303462 | MS.gene024985:CDS |
| ACTCTTACAAAAGCCATAAT+CGG | 0.362269 | 5.3:+302714 | MS.gene024985:CDS |
| TTCTACAGGTTAATTATGTT+GGG | 0.364723 | 5.3:+302365 | MS.gene024985:intron |
| TGGTGACTTCTTAAGAGAAT+TGG | 0.365879 | 5.3:+302677 | MS.gene024985:CDS |
| GAAGCAAGAGCTTCTTCCTT+TGG | 0.371838 | 5.3:+299025 | MS.gene024985:CDS |
| CCTCCATTCTTGCTCTACTC+TGG | 0.372732 | 5.3:-299861 | None:intergenic |
| AAGCCATAATCGGGACCATT+GGG | 0.373438 | 5.3:+302724 | MS.gene024985:CDS |
| TCCAACTAAACCAATTAATT+GGG | 0.375136 | 5.3:+299533 | MS.gene024985:CDS |
| TCTTCACGAGCAGCTTTCTC+CGG | 0.378170 | 5.3:-298635 | None:intergenic |
| AACGATGAGAACAAAGTCTT+TGG | 0.378667 | 5.3:+295718 | MS.gene024985:CDS |
| TATCAGAGAGCAACCAGTTA+AGG | 0.379114 | 5.3:-297905 | None:intergenic |
| GGTGATGCCATTGTTGGTGG+TGG | 0.386322 | 5.3:+298032 | MS.gene024985:CDS |
| AAGTAAATCCTGAATTTAAA+GGG | 0.392910 | 5.3:-303565 | None:intergenic |
| TGATGCAATGGAAGCAGTTA+AGG | 0.395124 | 5.3:+303455 | MS.gene024985:CDS |
| ACAGGGTAACAAGTCCTATC+AGG | 0.399059 | 5.3:-295895 | None:intergenic |
| GCTCGTCCAAGTATATTATC+TGG | 0.404875 | 5.3:-296186 | None:intergenic |
| TTTCTTTATTTGAAAGAAGT+TGG | 0.410722 | 5.3:-303541 | None:intergenic |
| ACAATCAGTTCTTCTACCTT+AGG | 0.411433 | 5.3:-298122 | None:intergenic |
| CAAGAGTTTGAAGGAATTCA+AGG | 0.412469 | 5.3:-301547 | None:intergenic |
| TGCCCATCTCCAGCAATGAT+TGG | 0.413819 | 5.3:-299492 | None:intergenic |
| GGGATCACGATAAGACAAAA+AGG | 0.416539 | 5.3:-302619 | None:intergenic |
| TCAATTTAGCATTGGAATGA+AGG | 0.416737 | 5.3:+298079 | MS.gene024985:CDS |
| TTCCCAGAGTAGAGCAAGAA+TGG | 0.423870 | 5.3:+299858 | MS.gene024985:CDS |
| AGGAATACCAGTGGAATCAT+TGG | 0.427164 | 5.3:-295761 | None:intergenic |
| TTTGCCGCATCTACATCATC+TGG | 0.430260 | 5.3:-303507 | None:intergenic |
| CTTCACGAGCAGCTTTCTCC+GGG | 0.431343 | 5.3:-298634 | None:intergenic |
| TGGAAGCAGTTAAGGATAAA+GGG | 0.433470 | 5.3:+303463 | MS.gene024985:CDS |
| TAGCCAATCATTGCTGGAGA+TGG | 0.434077 | 5.3:+299489 | MS.gene024985:intron |
| CAAATATTTGGTGTAGCAAT+GGG | 0.436009 | 5.3:-301740 | None:intergenic |
| ATGCATTCACTTATCCTGAT+AGG | 0.437102 | 5.3:+295881 | MS.gene024985:CDS |
| TTGGTATTGGTGGAGGCGAC+AGG | 0.438623 | 5.3:-295913 | None:intergenic |
| AGGCTGGATGTCAGAAAAGA+TGG | 0.439677 | 5.3:+300050 | MS.gene024985:CDS |
| GATGAAGTTGCGCGTGAACT+AGG | 0.440088 | 5.3:+295595 | MS.gene024985:CDS |
| TGGGATCGTGTACGTGTTAG+TGG | 0.444902 | 5.3:+302472 | MS.gene024985:CDS |
| CCAAATACATTAGCAATACA+TGG | 0.445707 | 5.3:+302446 | MS.gene024985:CDS |
| CGTGTTAGTGGTGGAGCTTA+TGG | 0.451692 | 5.3:+302484 | MS.gene024985:CDS |
| TCCATTCACATCATCAGTGC+AGG | 0.452497 | 5.3:+299582 | MS.gene024985:CDS |
| ATTTATCAAGCACCCTTGCT+TGG | 0.454418 | 5.3:-301639 | None:intergenic |
| GGGTGATTTGAAGAAGCATA+TGG | 0.454425 | 5.3:+297878 | MS.gene024985:CDS |
| AATTCCTCAAAAGTCAACTT+AGG | 0.454491 | 5.3:-296370 | None:intergenic |
| AAAGAGAATTGATCAAGATT+GGG | 0.456112 | 5.3:+301571 | MS.gene024985:CDS |
| AACGGAGAAACAGATATTGC+AGG | 0.457343 | 5.3:+298661 | MS.gene024985:CDS |
| GACTTACCCTGCAGGGGAAG+GGG | 0.460013 | 5.3:+297857 | MS.gene024985:CDS |
| GTAGCAATGGGTGAGCTAGT+AGG | 0.461363 | 5.3:-301728 | None:intergenic |
| CAGAAAAGATGGGTGGTCTC+AGG | 0.461843 | 5.3:+300061 | MS.gene024985:CDS |
| CGAACAATCATGTGACTACA+TGG | 0.462587 | 5.3:-299616 | None:intergenic |
| ACCTCAGTGGGAACATGAAT+AGG | 0.465251 | 5.3:-298827 | None:intergenic |
| TTGATAAATATCACCGCTGA+TGG | 0.467919 | 5.3:+301653 | MS.gene024985:CDS |
| AAGTATGACAACAGAAGATC+TGG | 0.468106 | 5.3:+298694 | MS.gene024985:CDS |
| TTTGCACAGTTACTTTATGA+AGG | 0.468347 | 5.3:-298506 | None:intergenic |
| TTAAAGCTTCTGGTGGATCA+GGG | 0.470497 | 5.3:-298763 | None:intergenic |
| CTCTGATAAGCCCTTAGACT+TGG | 0.470588 | 5.3:+297920 | MS.gene024985:CDS |
| CCAAATATTTGGTGTAGCAA+TGG | 0.476193 | 5.3:-301741 | None:intergenic |
| CTGGGTGATGCCATTGTTGG+TGG | 0.476342 | 5.3:+298029 | MS.gene024985:CDS |
| CTCCATTCTTGCTCTACTCT+GGG | 0.476800 | 5.3:-299860 | None:intergenic |
| GCAACCAACGTTTATGATGC+TGG | 0.480406 | 5.3:+302391 | MS.gene024985:CDS |
| TGGAATCATTGGGAGGAGTT+CGG | 0.481246 | 5.3:-295750 | None:intergenic |
| ATCAGAGAGCAACCAGTTAA+GGG | 0.481739 | 5.3:-297904 | None:intergenic |
| CGAGCAGCTTTCTCCGGGTC+CGG | 0.482087 | 5.3:-298629 | None:intergenic |
| TAGCAATGGGTGAGCTAGTA+GGG | 0.482228 | 5.3:-301727 | None:intergenic |
| CAGAAAACTAAGAGCTAGCT+CGG | 0.485197 | 5.3:-297946 | None:intergenic |
| TTCCAATGCTAAATTGAGGC+TGG | 0.485674 | 5.3:-298073 | None:intergenic |
| CCTTTGAGTAACTCAACAAA+TGG | 0.487250 | 5.3:-295838 | None:intergenic |
| CTCCAGCCTCAATTTAGCAT+TGG | 0.487282 | 5.3:+298071 | MS.gene024985:CDS |
| TGTTGTGTTTAATGAGATGA+AGG | 0.488119 | 5.3:+296149 | MS.gene024985:CDS |
| GAGACTTACCCTGCAGGGGA+AGG | 0.488569 | 5.3:+297855 | MS.gene024985:CDS |
| ATTACCATCCCAGCAATTCA+CGG | 0.488844 | 5.3:+296694 | MS.gene024985:CDS |
| TTCATTCCAATGCTAAATTG+AGG | 0.490681 | 5.3:-298077 | None:intergenic |
| ACTTGGACGAGCTTCTCAAC+AGG | 0.490880 | 5.3:+296197 | MS.gene024985:CDS |
| CATGACCACTGCCTCTTAGC+CGG | 0.493903 | 5.3:-299987 | None:intergenic |
| CGGCTAAGAGGCAGTGGTCA+TGG | 0.495662 | 5.3:+299988 | MS.gene024985:CDS |
| TAGCTGATCTTACAATGGAC+TGG | 0.496141 | 5.3:-298274 | None:intergenic |
| TCTCTGAGAGAGAACAATAC+CGG | 0.497128 | 5.3:+298221 | MS.gene024985:CDS |
| AGACTTACCCTGCAGGGGAA+GGG | 0.497934 | 5.3:+297856 | MS.gene024985:CDS |
| AGGCTGGGTGATGCCATTGT+TGG | 0.499285 | 5.3:+298026 | MS.gene024985:CDS |
| AAAACACTTGAGGTATATGA+TGG | 0.499301 | 5.3:+302651 | MS.gene024985:CDS |
| CCCTGCACTGATGATGTGAA+TGG | 0.499450 | 5.3:-299583 | None:intergenic |
| GTGATGCCATTGTTGGTGGT+GGG | 0.504102 | 5.3:+298033 | MS.gene024985:CDS |
| ACATTAGCAATACATGGTTG+TGG | 0.508197 | 5.3:+302452 | MS.gene024985:CDS |
| GAAATAATCCTTACCTGAGT+AGG | 0.508471 | 5.3:-301803 | None:intergenic |
| TGTATTCATAGAGGCCTCAA+TGG | 0.508835 | 5.3:-298189 | None:intergenic |
| TCTCATACTTCAGTGGCTCA+AGG | 0.509137 | 5.3:-298395 | None:intergenic |
| AGTTAAGGATAAAGGGGTTG+TGG | 0.510351 | 5.3:+303470 | MS.gene024985:CDS |
| TGCTGAAGACCTTTATGACT+TGG | 0.510954 | 5.3:+299660 | MS.gene024985:CDS |
| GTCGGTGTAAAGGACATCAT+TGG | 0.511521 | 5.3:-298979 | None:intergenic |
| CAACGCCATATGTGTTATCT+GGG | 0.512122 | 5.3:-296321 | None:intergenic |
| GTTCGAGGCAAAGCCATGGC+TGG | 0.513782 | 5.3:+299634 | MS.gene024985:CDS |
| CATTAGCAATACATGGTTGT+GGG | 0.515092 | 5.3:+302453 | MS.gene024985:CDS |
| CTCTTACAAAAGCCATAATC+GGG | 0.515937 | 5.3:+302715 | MS.gene024985:CDS |
| CTCATACTTCAGTGGCTCAA+GGG | 0.517232 | 5.3:-298394 | None:intergenic |
| AAAGCCATAATCGGGACCAT+TGG | 0.520667 | 5.3:+302723 | MS.gene024985:CDS |
| ATGAAGTTGCGCGTGAACTA+GGG | 0.520837 | 5.3:+295596 | MS.gene024985:CDS |
| AGGATGCGGAGGCGCTCAGT+TGG | 0.521313 | 5.3:-296741 | None:intergenic |
| TCTCAACCAGATAATATACT+TGG | 0.524955 | 5.3:+296180 | MS.gene024985:CDS |
| GGAATACCAGTGGAATCATT+GGG | 0.526341 | 5.3:-295760 | None:intergenic |
| AACCAAATCCGTGAATTGCT+GGG | 0.526376 | 5.3:-296702 | None:intergenic |
| GGCTTTGAAAACAGTTTCTG+TGG | 0.526896 | 5.3:-297819 | None:intergenic |
| AAAATCCTTGGTATTGGTGG+AGG | 0.527503 | 5.3:-295920 | None:intergenic |
| CAAACAATTCATTGATGCAA+TGG | 0.528180 | 5.3:+303443 | MS.gene024985:CDS |
| AGCCAATCATTGCTGGAGAT+GGG | 0.529241 | 5.3:+299490 | MS.gene024985:intron |
| TGGAATTGCAGCTGCAAGGA+TGG | 0.529924 | 5.3:+300008 | MS.gene024985:CDS |
| GACACATTTAGGAAAGAAAA+CGG | 0.531446 | 5.3:-295971 | None:intergenic |
| ACTTACCCTGCAGGGGAAGG+GGG | 0.532763 | 5.3:+297858 | MS.gene024985:CDS |
| CAGGGTAAGTCTCAACAATC+CGG | 0.533571 | 5.3:-297845 | None:intergenic |
| TGGGTATCACAGAGGAAGAA+AGG | 0.534259 | 5.3:+302962 | MS.gene024985:CDS |
| CAAAACTTAATGCAGCAGGC+TGG | 0.536922 | 5.3:+300034 | MS.gene024985:CDS |
| TCTTATTACCACTCAGGATG+CGG | 0.538854 | 5.3:-296755 | None:intergenic |
| CAAATTGTTTGAAACGCCGT+TGG | 0.539444 | 5.3:-299834 | None:intergenic |
| TCAAGAGCTTAGGCTTAAGC+AGG | 0.542544 | 5.3:+298736 | MS.gene024985:CDS |
| TGTAGTCACATGATTGTTCG+AGG | 0.543034 | 5.3:+299619 | MS.gene024985:CDS |
| GTCTTCAGCACGTCCAGCCA+TGG | 0.544741 | 5.3:-299647 | None:intergenic |
| TGATGTAGATGCGGCAAACA+AGG | 0.548304 | 5.3:+303512 | MS.gene024985:CDS |
| CGAACACTATGTCGGTGTAA+AGG | 0.548343 | 5.3:-298989 | None:intergenic |
| AGCTATTGTGATTCCTACTC+AGG | 0.548772 | 5.3:+301790 | MS.gene024985:CDS |
| TAAAGTAACTGTGCAAATGC+AGG | 0.549237 | 5.3:+298512 | MS.gene024985:CDS |
| CTCGTGCTACTCAAGAGCTT+AGG | 0.550757 | 5.3:+298726 | MS.gene024985:CDS |
| TTCTGAAGATGATATTCCTA+AGG | 0.550957 | 5.3:+298106 | MS.gene024985:CDS |
| AGCTCGGTTTCCAAGTCTAA+GGG | 0.555413 | 5.3:-297930 | None:intergenic |
| AAATTCAATTGTATTCATAG+AGG | 0.555732 | 5.3:-298198 | None:intergenic |
| CTCATCCCCAAACGAATCAA+AGG | 0.557460 | 5.3:+297791 | MS.gene024985:CDS |
| AGAGGTTTCTCATACTTCAG+TGG | 0.560168 | 5.3:-298402 | None:intergenic |
| AGTATGTTGCGGTATATACT+GGG | 0.560882 | 5.3:+302943 | MS.gene024985:intron |
| TTGTTGAGACTTACCCTGCA+GGG | 0.561000 | 5.3:+297850 | MS.gene024985:CDS |
| CTTGAGGTATATGATGGAAC+TGG | 0.561746 | 5.3:+302657 | MS.gene024985:CDS |
| TAAAGCTTCTGGTGGATCAG+GGG | 0.563010 | 5.3:-298762 | None:intergenic |
| TCAACAAATGGTTCTTTGAG+AGG | 0.563123 | 5.3:-295826 | None:intergenic |
| TCATACTTCAGTGGCTCAAG+GGG | 0.563562 | 5.3:-298393 | None:intergenic |
| TTCTAACCCACCACCAACAA+TGG | 0.567241 | 5.3:-298039 | None:intergenic |
| ACCAAATCTTATTACCACTC+AGG | 0.568657 | 5.3:-296761 | None:intergenic |
| AGCTGCTCGTGAAGAAGCAA+CGG | 0.568986 | 5.3:+298643 | MS.gene024985:CDS |
| ATTGTTGAGACTTACCCTGC+AGG | 0.572358 | 5.3:+297849 | MS.gene024985:CDS |
| CTCTGAGAGAGAACAATACC+GGG | 0.573068 | 5.3:+298222 | MS.gene024985:CDS |
| TTCAACCTTTGATTCGTTTG+GGG | 0.574775 | 5.3:-297796 | None:intergenic |
| GGCTGGATGTCAGAAAAGAT+GGG | 0.574997 | 5.3:+300051 | MS.gene024985:CDS |
| TGATAAATATCACCGCTGAT+GGG | 0.577228 | 5.3:+301654 | MS.gene024985:CDS |
| GATGCAAAACTTAATGCAGC+AGG | 0.577530 | 5.3:+300030 | MS.gene024985:CDS |
| TTTCTTTCCTAAATGTGTCG+AGG | 0.577640 | 5.3:+295975 | MS.gene024985:CDS |
| TTTCTGAATCATCTTCTACT+GGG | 0.580482 | 5.3:+297963 | MS.gene024985:CDS |
| CAATTTAGCATTGGAATGAA+GGG | 0.581968 | 5.3:+298080 | MS.gene024985:CDS |
| CAAATTTGTCCGTATTCGCA+AGG | 0.584600 | 5.3:-301682 | None:intergenic |
| TACCAAAACAGTGGTACCAA+AGG | 0.585642 | 5.3:-299041 | None:intergenic |
| CCATTTGTTGAGTTACTCAA+AGG | 0.586706 | 5.3:+295838 | MS.gene024985:CDS |
| TTACAATGGACTGGAGCATG+AGG | 0.589145 | 5.3:-298265 | None:intergenic |
| CACATCATCAGTGCAGGGCA+AGG | 0.591311 | 5.3:+299588 | MS.gene024985:CDS |
| TGATATCTCATCATCTCTTG+AGG | 0.591893 | 5.3:+301595 | MS.gene024985:CDS |
| GTTAGTGGTGGAGCTTATGG+AGG | 0.594232 | 5.3:+302487 | MS.gene024985:CDS |
| AAATCCGTGAATTGCTGGGA+TGG | 0.594543 | 5.3:-296698 | None:intergenic |
| ACTCCTCCCAATGATTCCAC+TGG | 0.595991 | 5.3:+295754 | MS.gene024985:CDS |
| AAATCTAAAATAGCAAAGGA+AGG | 0.598062 | 5.3:+298435 | MS.gene024985:CDS |
| CAGGATAAGTGAATGCATTG+AGG | 0.599381 | 5.3:-295876 | None:intergenic |
| GAAGAAAGGCAAAAGAGACG+TGG | 0.599903 | 5.3:+302976 | MS.gene024985:CDS |
| CCTGAAATCTAAAATAGCAA+AGG | 0.600462 | 5.3:+298431 | MS.gene024985:CDS |
| TGGTGGTGGCGAAGTAGTGA+AGG | 0.601630 | 5.3:+295573 | MS.gene024985:CDS |
| TAAGTCTCAACAATCCGGAC+TGG | 0.602105 | 5.3:-297840 | None:intergenic |
| ACAATAGCTTCATTTGTCAA+CGG | 0.602200 | 5.3:-301776 | None:intergenic |
| TAGAACCGGCTAAGAGGCAG+TGG | 0.603061 | 5.3:+299982 | MS.gene024985:intron |
| TGGTATTGGTGGAGGCGACA+GGG | 0.606318 | 5.3:-295912 | None:intergenic |
| ATCTCCAGATGATGTAGATG+CGG | 0.619830 | 5.3:+303503 | MS.gene024985:CDS |
| ATATCTTGAAGAGAAAGACT+AGG | 0.619984 | 5.3:-298794 | None:intergenic |
| GGAAGCAGTTAAGGATAAAG+GGG | 0.620127 | 5.3:+303464 | MS.gene024985:CDS |
| TAAAGGGGTTGTGGTTGCAG+TGG | 0.620471 | 5.3:+303479 | MS.gene024985:CDS |
| ATGTAGGTTGGGGATATCAA+CGG | 0.621061 | 5.3:+298927 | MS.gene024985:intron |
| AAAGCAATGATAACCTCAGT+GGG | 0.622193 | 5.3:-298839 | None:intergenic |
| GTCAACTTAGGAATAACTTG+AGG | 0.627900 | 5.3:-296358 | None:intergenic |
| TTATAAGTGATATCTTCAGA+AGG | 0.629909 | 5.3:-296045 | None:intergenic |
| CCATTCACATCATCAGTGCA+GGG | 0.631490 | 5.3:+299583 | MS.gene024985:CDS |
| TTAGATTTCAGGTCTTGGAG+AGG | 0.632896 | 5.3:-298420 | None:intergenic |
| AACACATATGGCGTTGACAG+CGG | 0.635027 | 5.3:+296328 | MS.gene024985:CDS |
| GATTGTTCGAGGCAAAGCCA+TGG | 0.636417 | 5.3:+299630 | MS.gene024985:CDS |
| ATAACCAGCATCATAAACGT+TGG | 0.637210 | 5.3:-302395 | None:intergenic |
| ATTGCTGGAGATGGGCACAA+AGG | 0.637711 | 5.3:+299498 | MS.gene024985:CDS |
| TGTTGAGACTTACCCTGCAG+GGG | 0.638158 | 5.3:+297851 | MS.gene024985:CDS |
| ACGTTCAATTTACAGACCAA+CGG | 0.638686 | 5.3:+299818 | MS.gene024985:CDS |
| GAGCGCCTCCGCATCCTGAG+TGG | 0.649913 | 5.3:+296747 | MS.gene024985:CDS |
| ATAGGAGTCTACATCCCCAA+TGG | 0.650682 | 5.3:-302739 | None:intergenic |
| TGCTGGGATGGTAATACTTG+CGG | 0.652158 | 5.3:-296686 | None:intergenic |
| ACACTGTGCTCTAAAATGTG+AGG | 0.655510 | 5.3:-295781 | None:intergenic |
| CCAGAGTAGAGCAAGAATGG+AGG | 0.655893 | 5.3:+299861 | MS.gene024985:CDS |
| GTCATGGAATTGCAGCTGCA+AGG | 0.656712 | 5.3:+300004 | MS.gene024985:CDS |
| GTTGTGTTTAATGAGATGAA+GGG | 0.658075 | 5.3:+296150 | MS.gene024985:CDS |
| TGTCGCCTCCACCAATACCA+AGG | 0.663038 | 5.3:+295915 | MS.gene024985:CDS |
| TACAATGGACTGGAGCATGA+GGG | 0.669294 | 5.3:-298264 | None:intergenic |
| TATTACCACTCAGGATGCGG+AGG | 0.669703 | 5.3:-296752 | None:intergenic |
| ACATATGGCGTTGACAGCGG+AGG | 0.673297 | 5.3:+296331 | MS.gene024985:CDS |
| ACTCATGTCGAACACTATGT+CGG | 0.676317 | 5.3:-298997 | None:intergenic |
| ACCTATTCATGTTCCCACTG+AGG | 0.677718 | 5.3:+298826 | MS.gene024985:CDS |
| CAAGCCACGAGGAAATGACC+CGG | 0.678318 | 5.3:-298240 | None:intergenic |
| TAAAATGTGAGGAATACCAG+TGG | 0.680348 | 5.3:-295770 | None:intergenic |
| AGCCATAATCGGGACCATTG+GGG | 0.686109 | 5.3:+302725 | MS.gene024985:CDS |
| GATCGTGTACGTGTTAGTGG+TGG | 0.686533 | 5.3:+302475 | MS.gene024985:CDS |
| GAAAGCAATGATAACCTCAG+TGG | 0.691309 | 5.3:-298840 | None:intergenic |
| ATACCAGTGGAATCATTGGG+AGG | 0.698254 | 5.3:-295757 | None:intergenic |
| TGGATGTCAGAAAAGATGGG+TGG | 0.705171 | 5.3:+300054 | MS.gene024985:CDS |
| TTGCATGATTACCAAAACAG+TGG | 0.717400 | 5.3:-299050 | None:intergenic |
| AATACCGGGTCATTTCCTCG+TGG | 0.737191 | 5.3:+298236 | MS.gene024985:CDS |
| AGCATGAGGGACAAGCCACG+AGG | 0.739634 | 5.3:-298251 | None:intergenic |
| GTATATACTGGGTATCACAG+AGG | 0.779699 | 5.3:+302954 | MS.gene024985:CDS |
| GTGGAGAGATATTATCTACG+AGG | 0.781070 | 5.3:+302995 | MS.gene024985:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 295553 | 303572 | 295553 | ID=MS.gene024985 |
| chr5.3 | mRNA | 295553 | 303572 | 295553 | ID=MS.gene024985.t1;Parent=MS.gene024985 |
| chr5.3 | exon | 295553 | 296069 | 295553 | ID=MS.gene024985.t1.exon1;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 295553 | 296069 | 295553 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 296148 | 296218 | 296148 | ID=MS.gene024985.t1.exon2;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 296148 | 296218 | 296148 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 296313 | 296396 | 296313 | ID=MS.gene024985.t1.exon3;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 296313 | 296396 | 296313 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 296678 | 296768 | 296678 | ID=MS.gene024985.t1.exon4;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 296678 | 296768 | 296678 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 297766 | 298283 | 297766 | ID=MS.gene024985.t1.exon5;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 297766 | 298283 | 297766 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 298369 | 298533 | 298369 | ID=MS.gene024985.t1.exon6;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 298369 | 298533 | 298369 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 298629 | 298847 | 298629 | ID=MS.gene024985.t1.exon7;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 298629 | 298847 | 298629 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 298933 | 299060 | 298933 | ID=MS.gene024985.t1.exon8;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 298933 | 299060 | 298933 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 299492 | 299681 | 299492 | ID=MS.gene024985.t1.exon9;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 299492 | 299681 | 299492 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 299799 | 299882 | 299799 | ID=MS.gene024985.t1.exon10;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 299799 | 299882 | 299799 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 299985 | 300082 | 299985 | ID=MS.gene024985.t1.exon11;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 299985 | 300082 | 299985 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 301544 | 301811 | 301544 | ID=MS.gene024985.t1.exon12;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 301544 | 301811 | 301544 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 302373 | 302535 | 302373 | ID=MS.gene024985.t1.exon13;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 302373 | 302535 | 302373 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 302610 | 302749 | 302610 | ID=MS.gene024985.t1.exon14;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 302610 | 302749 | 302610 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 302945 | 303016 | 302945 | ID=MS.gene024985.t1.exon15;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 302945 | 303016 | 302945 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| chr5.3 | exon | 303438 | 303572 | 303438 | ID=MS.gene024985.t1.exon16;Parent=MS.gene024985.t1 |
| chr5.3 | CDS | 303438 | 303572 | 303438 | ID=cds.MS.gene024985.t1;Parent=MS.gene024985.t1 |
| Gene Sequence |
| Protein sequence |
