Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024987.t1 | XP_013453279.2 | 96.5 | 1099 | 31 | 2 | 1 | 1099 | 1 | 1092 | 0.00E+00 | 2093.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024987.t1 | Q9LJL3 | 75.3 | 1069 | 246 | 6 | 42 | 1099 | 19 | 1080 | 0.0e+00 | 1616.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024987.t1 | A0A396HIP5 | 96.5 | 1099 | 31 | 2 | 1 | 1099 | 1 | 1092 | 0.0e+00 | 2093.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024985 | MS.gene024987 | PPI |
MS.gene046969 | MS.gene024987 | PPI |
MS.gene92382 | MS.gene024987 | PPI |
MS.gene024987 | MS.gene024985 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024987.t1 | MTR_5g004680 | 98.155 | 1084 | 13 | 2 | 16 | 1099 | 1 | 1077 | 0.0 | 2183 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024987.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
MS.gene024987.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
MS.gene024987.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
MS.gene024987.t1 | AT3G19170 | 78.751 | 993 | 203 | 3 | 108 | 1099 | 95 | 1080 | 0.0 | 1668 |
MS.gene024987.t1 | AT3G19170 | 76.737 | 993 | 212 | 5 | 108 | 1099 | 95 | 1069 | 0.0 | 1612 |
MS.gene024987.t1 | AT1G49630 | 79.784 | 925 | 185 | 2 | 175 | 1098 | 7 | 930 | 0.0 | 1574 |
MS.gene024987.t1 | AT1G49630 | 78.034 | 824 | 179 | 2 | 276 | 1098 | 6 | 828 | 0.0 | 1365 |
Find 269 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCAACTAAACCAATTAAT+TGG | 0.112942 | 5.3:+234477 | MS.gene024987:CDS |
CCATGTATTGCTAATGTATT+TGG | 0.135870 | 5.3:-237391 | None:intergenic |
CCATTGCTACACCAAATATT+TGG | 0.196069 | 5.3:+236686 | MS.gene024987:CDS |
GTTTGCATATTTAGGGTAAA+TGG | 0.198410 | 5.3:+233300 | MS.gene024987:intron |
AAGATGAATTTCTCTATTAA+TGG | 0.198802 | 5.3:-233422 | None:intergenic |
AGTCTAACGTTCCAAATATT+TGG | 0.199487 | 5.3:-236697 | None:intergenic |
CAGTATGTTGCGGTATATAC+TGG | 0.218929 | 5.3:+237887 | MS.gene024987:intron |
GGAACATGAATAGGTTCTTT+AGG | 0.245740 | 5.3:-233763 | None:intergenic |
ATCCCCAATGGTCCCGATTA+TGG | 0.250985 | 5.3:-237672 | None:intergenic |
TCAACGCCATATGTGTTATC+TGG | 0.257591 | 5.3:-231270 | None:intergenic |
TTCCTTTGGTACCACTGTTT+TGG | 0.261312 | 5.3:+233984 | MS.gene024987:CDS |
AGCATATGGTTTCCCTTAAC+TGG | 0.266266 | 5.3:+232837 | MS.gene024987:CDS |
GATGCTGGTTATAAGCTTAA+TGG | 0.276272 | 5.3:+237351 | MS.gene024987:CDS |
GTTCAACCTTTGATTCGTTT+GGG | 0.285001 | 5.3:-232742 | None:intergenic |
TGAACATCCTCGACACATTT+AGG | 0.286941 | 5.3:-230930 | None:intergenic |
ATCCCAGCAATTCACGGATT+TGG | 0.290483 | 5.3:+231647 | MS.gene024987:CDS |
GGTTCAACCTTTGATTCGTT+TGG | 0.294249 | 5.3:-232743 | None:intergenic |
TCCCAATTAATTGGTTTAGT+TGG | 0.315523 | 5.3:-234479 | None:intergenic |
AAAAGAGAATTGATCAAGAT+TGG | 0.323255 | 5.3:+236515 | MS.gene024987:CDS |
TCTGAAGATATCACTTATAA+AGG | 0.325491 | 5.3:+230996 | MS.gene024987:CDS |
TTTCTACAGGTTAATTATGT+TGG | 0.327149 | 5.3:+237309 | MS.gene024987:intron |
GAACATGAATAGGTTCTTTA+GGG | 0.335851 | 5.3:-233762 | None:intergenic |
CTTGCGGCGGTGGGAGTGAA+TGG | 0.339972 | 5.3:-230256 | None:intergenic |
TAGCTCGGTTTCCAAGTCTA+AGG | 0.341772 | 5.3:-232876 | None:intergenic |
AAACCAAATCCGTGAATTGC+TGG | 0.342696 | 5.3:-231650 | None:intergenic |
TTTAAAGCTTCTGGTGGATC+AGG | 0.343266 | 5.3:-233709 | None:intergenic |
TAGGATTAATTCAACTTCAA+TGG | 0.349493 | 5.3:+230165 | MS.gene024987:CDS |
ATGGAAGCAGTTAAGGATAA+AGG | 0.351452 | 5.3:+238407 | MS.gene024987:CDS |
ACTCTTACAAAAGCCATAAT+CGG | 0.362269 | 5.3:+237659 | MS.gene024987:CDS |
TTCTACAGGTTAATTATGTT+GGG | 0.364723 | 5.3:+237310 | MS.gene024987:intron |
TGGTGACTTCTTAAGAGAAT+TGG | 0.365879 | 5.3:+237622 | MS.gene024987:CDS |
GAAGCAAGAGCTTCTTCCTT+TGG | 0.371838 | 5.3:+233970 | MS.gene024987:CDS |
ACGAGTTGTCGGAAATATAA+TGG | 0.371922 | 5.3:+230126 | MS.gene024987:CDS |
CCTCCATTCTTGCTCTACTC+TGG | 0.372732 | 5.3:-234806 | None:intergenic |
AAGCCATAATCGGGACCATT+GGG | 0.373438 | 5.3:+237669 | MS.gene024987:CDS |
TCCAACTAAACCAATTAATT+GGG | 0.375136 | 5.3:+234478 | MS.gene024987:CDS |
TCTTCACGAGCAGCTTTCTC+CGG | 0.378170 | 5.3:-233580 | None:intergenic |
AACGATGAGAACAAAGTCTT+TGG | 0.378667 | 5.3:+230666 | MS.gene024987:CDS |
TATCAGAGAGCAACCAGTTA+AGG | 0.379114 | 5.3:-232850 | None:intergenic |
GGTGATGCCATTGTTGGTGG+TGG | 0.386322 | 5.3:+232977 | MS.gene024987:CDS |
AAGTAAATCCTGAATTTAAA+GGG | 0.392910 | 5.3:-238510 | None:intergenic |
TGATGCAATGGAAGCAGTTA+AGG | 0.395124 | 5.3:+238400 | MS.gene024987:CDS |
ACAGGGTAACAAGTCCTATC+AGG | 0.399059 | 5.3:-230843 | None:intergenic |
GCTCGTCCAAGTATATTATC+TGG | 0.404875 | 5.3:-231134 | None:intergenic |
TTTCTTTATTTGAAAGAAGT+TGG | 0.410722 | 5.3:-238486 | None:intergenic |
ACAATCAGTTCTTCTACCTT+AGG | 0.411433 | 5.3:-233067 | None:intergenic |
CAAGAGTTTGAAGGAATTCA+AGG | 0.412469 | 5.3:-236492 | None:intergenic |
TGCCCATCTCCAGCAATGAT+TGG | 0.413819 | 5.3:-234437 | None:intergenic |
GCTTCCCTCGTTTCTTCTCC+AGG | 0.415645 | 5.3:+230403 | MS.gene024987:CDS |
TTGCGGCGGTGGGAGTGAAT+GGG | 0.416301 | 5.3:-230255 | None:intergenic |
GGGATCACGATAAGACAAAA+AGG | 0.416539 | 5.3:-237564 | None:intergenic |
TCAATTTAGCATTGGAATGA+AGG | 0.416737 | 5.3:+233024 | MS.gene024987:CDS |
AGGAGAGAACCTTGCGGCGG+TGG | 0.417046 | 5.3:-230266 | None:intergenic |
TTCCCAGAGTAGAGCAAGAA+TGG | 0.423870 | 5.3:+234803 | MS.gene024987:CDS |
AGGAATACCAGTGGAATCAT+TGG | 0.427164 | 5.3:-230709 | None:intergenic |
TTCATACCTACTATAACCTT+TGG | 0.427406 | 5.3:-237720 | None:intergenic |
TGGAGAGGCTGCAGCGGCGG+CGG | 0.429831 | 5.3:-230300 | None:intergenic |
TTTGCCGCATCTACATCATC+TGG | 0.430260 | 5.3:-238452 | None:intergenic |
CTACTATAACCTTTGGCATC+AGG | 0.430815 | 5.3:-237713 | None:intergenic |
CTTCACGAGCAGCTTTCTCC+GGG | 0.431343 | 5.3:-233579 | None:intergenic |
TGGAAGCAGTTAAGGATAAA+GGG | 0.433470 | 5.3:+238408 | MS.gene024987:CDS |
TAGCCAATCATTGCTGGAGA+TGG | 0.434077 | 5.3:+234434 | MS.gene024987:intron |
CAAATATTTGGTGTAGCAAT+GGG | 0.436009 | 5.3:-236685 | None:intergenic |
ATGCATTCACTTATCCTGAT+AGG | 0.437102 | 5.3:+230829 | MS.gene024987:CDS |
TTGGTATTGGTGGAGGCGAC+AGG | 0.438623 | 5.3:-230861 | None:intergenic |
AGGCTGGATGTCAGAAAAGA+TGG | 0.439677 | 5.3:+234995 | MS.gene024987:CDS |
GATGAAGTTGCGCGTGAACT+AGG | 0.440088 | 5.3:+230543 | MS.gene024987:CDS |
TGGGATCGTGTACGTGTTAG+TGG | 0.444902 | 5.3:+237417 | MS.gene024987:CDS |
CCAAATACATTAGCAATACA+TGG | 0.445707 | 5.3:+237391 | MS.gene024987:CDS |
CGTGTTAGTGGTGGAGCTTA+TGG | 0.451692 | 5.3:+237429 | MS.gene024987:CDS |
TCCATTCACATCATCAGTGC+AGG | 0.452497 | 5.3:+234527 | MS.gene024987:CDS |
ATTTATCAAGCACCCTTGCT+TGG | 0.454418 | 5.3:-236584 | None:intergenic |
GGGTGATTTGAAGAAGCATA+TGG | 0.454425 | 5.3:+232823 | MS.gene024987:CDS |
AATTCCTCAAAAGTCAACTT+AGG | 0.454491 | 5.3:-231318 | None:intergenic |
AAAGAGAATTGATCAAGATT+GGG | 0.456112 | 5.3:+236516 | MS.gene024987:CDS |
AACGGAGAAACAGATATTGC+AGG | 0.457343 | 5.3:+233606 | MS.gene024987:CDS |
TGGAGATAGGAGGAAGTTGT+AGG | 0.459668 | 5.3:+230146 | MS.gene024987:CDS |
GACTTACCCTGCAGGGGAAG+GGG | 0.460013 | 5.3:+232802 | MS.gene024987:CDS |
TTTGGCATCAGGAAGTTGAT+AGG | 0.461058 | 5.3:-237702 | None:intergenic |
GTAGCAATGGGTGAGCTAGT+AGG | 0.461363 | 5.3:-236673 | None:intergenic |
CAGAAAAGATGGGTGGTCTC+AGG | 0.461843 | 5.3:+235006 | MS.gene024987:CDS |
CGAACAATCATGTGACTACA+TGG | 0.462587 | 5.3:-234561 | None:intergenic |
ACCTCAGTGGGAACATGAAT+AGG | 0.465251 | 5.3:-233772 | None:intergenic |
GGGAAGCTCTGGTGGAGAAA+TGG | 0.467047 | 5.3:-230387 | None:intergenic |
TTGATAAATATCACCGCTGA+TGG | 0.467919 | 5.3:+236598 | MS.gene024987:CDS |
AAGTATGACAACAGAAGATC+TGG | 0.468106 | 5.3:+233639 | MS.gene024987:CDS |
TTTGCACAGTTACTTTATGA+AGG | 0.468347 | 5.3:-233451 | None:intergenic |
TTAAAGCTTCTGGTGGATCA+GGG | 0.470497 | 5.3:-233708 | None:intergenic |
CTCTGATAAGCCCTTAGACT+TGG | 0.470588 | 5.3:+232865 | MS.gene024987:CDS |
AAGCAATCTTGCGGTGGAAG+TGG | 0.470711 | 5.3:-230320 | None:intergenic |
CCAAATATTTGGTGTAGCAA+TGG | 0.476193 | 5.3:-236686 | None:intergenic |
CTGGGTGATGCCATTGTTGG+TGG | 0.476342 | 5.3:+232974 | MS.gene024987:CDS |
CTCCATTCTTGCTCTACTCT+GGG | 0.476800 | 5.3:-234805 | None:intergenic |
GCAACCAACGTTTATGATGC+TGG | 0.480406 | 5.3:+237336 | MS.gene024987:CDS |
TGGAATCATTGGGAGGAGTT+CGG | 0.481246 | 5.3:-230698 | None:intergenic |
ATCAGAGAGCAACCAGTTAA+GGG | 0.481739 | 5.3:-232849 | None:intergenic |
CGAGCAGCTTTCTCCGGGTC+CGG | 0.482087 | 5.3:-233574 | None:intergenic |
TAGCAATGGGTGAGCTAGTA+GGG | 0.482228 | 5.3:-236672 | None:intergenic |
CAGAAAACTAAGAGCTAGCT+CGG | 0.485197 | 5.3:-232891 | None:intergenic |
TTCCAATGCTAAATTGAGGC+TGG | 0.485674 | 5.3:-233018 | None:intergenic |
CCTTTGAGTAACTCAACAAA+TGG | 0.487250 | 5.3:-230786 | None:intergenic |
CTCCAGCCTCAATTTAGCAT+TGG | 0.487282 | 5.3:+233016 | MS.gene024987:CDS |
TGTTGTGTTTAATGAGATGA+AGG | 0.488119 | 5.3:+231097 | MS.gene024987:CDS |
GAGACTTACCCTGCAGGGGA+AGG | 0.488569 | 5.3:+232800 | MS.gene024987:CDS |
ATTACCATCCCAGCAATTCA+CGG | 0.488844 | 5.3:+231641 | MS.gene024987:CDS |
AGAGGCTGCAGCGGCGGCGG+AGG | 0.490190 | 5.3:-230297 | None:intergenic |
TTCATTCCAATGCTAAATTG+AGG | 0.490681 | 5.3:-233022 | None:intergenic |
ACTTGGACGAGCTTCTCAAC+AGG | 0.490880 | 5.3:+231145 | MS.gene024987:CDS |
CTGATGCCAAAGGTTATAGT+AGG | 0.492789 | 5.3:+237714 | MS.gene024987:CDS |
CATGACCACTGCCTCTTAGC+CGG | 0.493903 | 5.3:-234932 | None:intergenic |
CGGCTAAGAGGCAGTGGTCA+TGG | 0.495662 | 5.3:+234933 | MS.gene024987:CDS |
TAGCTGATCTTACAATGGAC+TGG | 0.496141 | 5.3:-233219 | None:intergenic |
TCTCTGAGAGAGAACAATAC+CGG | 0.497128 | 5.3:+233166 | MS.gene024987:CDS |
CGGCGGCGGAGGAGAGTCGG+AGG | 0.497341 | 5.3:-230286 | None:intergenic |
AGACTTACCCTGCAGGGGAA+GGG | 0.497934 | 5.3:+232801 | MS.gene024987:CDS |
AGGCTGGGTGATGCCATTGT+TGG | 0.499285 | 5.3:+232971 | MS.gene024987:CDS |
AAAACACTTGAGGTATATGA+TGG | 0.499301 | 5.3:+237596 | MS.gene024987:CDS |
CCCTGCACTGATGATGTGAA+TGG | 0.499450 | 5.3:-234528 | None:intergenic |
AGAAGAAACGAGGGAAGCTC+TGG | 0.499568 | 5.3:-230398 | None:intergenic |
GTCGGAAATATAATGGAGAT+AGG | 0.500076 | 5.3:+230133 | MS.gene024987:CDS |
GTGATGCCATTGTTGGTGGT+GGG | 0.504102 | 5.3:+232978 | MS.gene024987:CDS |
ACATTAGCAATACATGGTTG+TGG | 0.508197 | 5.3:+237397 | MS.gene024987:CDS |
GAAATAATCCTTACCTGAGT+AGG | 0.508471 | 5.3:-236748 | None:intergenic |
TGTATTCATAGAGGCCTCAA+TGG | 0.508835 | 5.3:-233134 | None:intergenic |
TCTCATACTTCAGTGGCTCA+AGG | 0.509137 | 5.3:-233340 | None:intergenic |
AGTTAAGGATAAAGGGGTTG+TGG | 0.510351 | 5.3:+238415 | MS.gene024987:CDS |
TGCTGAAGACCTTTATGACT+TGG | 0.510954 | 5.3:+234605 | MS.gene024987:CDS |
GTCGGTGTAAAGGACATCAT+TGG | 0.511521 | 5.3:-233924 | None:intergenic |
CAACGCCATATGTGTTATCT+GGG | 0.512122 | 5.3:-231269 | None:intergenic |
GTTCGAGGCAAAGCCATGGC+TGG | 0.513782 | 5.3:+234579 | MS.gene024987:CDS |
CATTAGCAATACATGGTTGT+GGG | 0.515092 | 5.3:+237398 | MS.gene024987:CDS |
CTCTTACAAAAGCCATAATC+GGG | 0.515937 | 5.3:+237660 | MS.gene024987:CDS |
CTCATACTTCAGTGGCTCAA+GGG | 0.517232 | 5.3:-233339 | None:intergenic |
AAAGCCATAATCGGGACCAT+TGG | 0.520667 | 5.3:+237668 | MS.gene024987:CDS |
ATGAAGTTGCGCGTGAACTA+GGG | 0.520837 | 5.3:+230544 | MS.gene024987:CDS |
AGGATGCGGAGGCGCTCAGT+TGG | 0.521313 | 5.3:-231688 | None:intergenic |
TCTCAACCAGATAATATACT+TGG | 0.524955 | 5.3:+231128 | MS.gene024987:CDS |
GGAATACCAGTGGAATCATT+GGG | 0.526341 | 5.3:-230708 | None:intergenic |
AACCAAATCCGTGAATTGCT+GGG | 0.526376 | 5.3:-231649 | None:intergenic |
GGCTTTGAAAACAGTTTCTG+TGG | 0.526896 | 5.3:-232764 | None:intergenic |
AGTGAATGGGGATAGAACGG+AGG | 0.527100 | 5.3:-230242 | None:intergenic |
AAAATCCTTGGTATTGGTGG+AGG | 0.527503 | 5.3:-230868 | None:intergenic |
CAAACAATTCATTGATGCAA+TGG | 0.528180 | 5.3:+238388 | MS.gene024987:CDS |
AGCCAATCATTGCTGGAGAT+GGG | 0.529241 | 5.3:+234435 | MS.gene024987:intron |
TGGAATTGCAGCTGCAAGGA+TGG | 0.529924 | 5.3:+234953 | MS.gene024987:CDS |
CAGCGGCGGCGGAGGAGAGT+CGG | 0.531320 | 5.3:-230289 | None:intergenic |
GACACATTTAGGAAAGAAAA+CGG | 0.531446 | 5.3:-230919 | None:intergenic |
CATTCACTCCCACCGCCGCA+AGG | 0.531835 | 5.3:+230257 | MS.gene024987:CDS |
ACTTACCCTGCAGGGGAAGG+GGG | 0.532763 | 5.3:+232803 | MS.gene024987:CDS |
CAGGGTAAGTCTCAACAATC+CGG | 0.533571 | 5.3:-232790 | None:intergenic |
AGGCAGTATAAACGAGTTGT+CGG | 0.533746 | 5.3:+230115 | MS.gene024987:CDS |
TGGGTATCACAGAGGAAGAA+AGG | 0.534259 | 5.3:+237907 | MS.gene024987:CDS |
CAAAACTTAATGCAGCAGGC+TGG | 0.536922 | 5.3:+234979 | MS.gene024987:CDS |
TCTTATTACCACTCAGGATG+CGG | 0.538854 | 5.3:-231702 | None:intergenic |
CAAATTGTTTGAAACGCCGT+TGG | 0.539444 | 5.3:-234779 | None:intergenic |
TCAAGAGCTTAGGCTTAAGC+AGG | 0.542544 | 5.3:+233681 | MS.gene024987:CDS |
TGTAGTCACATGATTGTTCG+AGG | 0.543034 | 5.3:+234564 | MS.gene024987:CDS |
GTCTTCAGCACGTCCAGCCA+TGG | 0.544741 | 5.3:-234592 | None:intergenic |
AGAAACGAGGGAAGCTCTGG+TGG | 0.546722 | 5.3:-230395 | None:intergenic |
TGATGTAGATGCGGCAAACA+AGG | 0.548304 | 5.3:+238457 | MS.gene024987:CDS |
CGAACACTATGTCGGTGTAA+AGG | 0.548343 | 5.3:-233934 | None:intergenic |
AGCTATTGTGATTCCTACTC+AGG | 0.548772 | 5.3:+236735 | MS.gene024987:CDS |
AAGTGGAGAGGCTGCAGCGG+CGG | 0.548881 | 5.3:-230303 | None:intergenic |
TAAAGTAACTGTGCAAATGC+AGG | 0.549237 | 5.3:+233457 | MS.gene024987:CDS |
CTCGTGCTACTCAAGAGCTT+AGG | 0.550757 | 5.3:+233671 | MS.gene024987:CDS |
TTCTGAAGATGATATTCCTA+AGG | 0.550957 | 5.3:+233051 | MS.gene024987:CDS |
AGCTCGGTTTCCAAGTCTAA+GGG | 0.555413 | 5.3:-232875 | None:intergenic |
AAATTCAATTGTATTCATAG+AGG | 0.555732 | 5.3:-233143 | None:intergenic |
CTCATCCCCAAACGAATCAA+AGG | 0.557460 | 5.3:+232736 | MS.gene024987:CDS |
GGAGAGAACCTTGCGGCGGT+GGG | 0.557924 | 5.3:-230265 | None:intergenic |
AGAGGTTTCTCATACTTCAG+TGG | 0.560168 | 5.3:-233347 | None:intergenic |
AGTATGTTGCGGTATATACT+GGG | 0.560882 | 5.3:+237888 | MS.gene024987:intron |
TTGTTGAGACTTACCCTGCA+GGG | 0.561000 | 5.3:+232795 | MS.gene024987:CDS |
GGGAGTGAATGGGGATAGAA+CGG | 0.561215 | 5.3:-230245 | None:intergenic |
CTTGAGGTATATGATGGAAC+TGG | 0.561746 | 5.3:+237602 | MS.gene024987:CDS |
TAAAGCTTCTGGTGGATCAG+GGG | 0.563010 | 5.3:-233707 | None:intergenic |
TCAACAAATGGTTCTTTGAG+AGG | 0.563123 | 5.3:-230774 | None:intergenic |
TCATACTTCAGTGGCTCAAG+GGG | 0.563562 | 5.3:-233338 | None:intergenic |
TTCTAACCCACCACCAACAA+TGG | 0.567241 | 5.3:-232984 | None:intergenic |
ACCAAATCTTATTACCACTC+AGG | 0.568657 | 5.3:-231708 | None:intergenic |
GTGAATGGGGATAGAACGGA+GGG | 0.568796 | 5.3:-230241 | None:intergenic |
AGCTGCTCGTGAAGAAGCAA+CGG | 0.568986 | 5.3:+233588 | MS.gene024987:CDS |
ATTGTTGAGACTTACCCTGC+AGG | 0.572358 | 5.3:+232794 | MS.gene024987:CDS |
CTCTGAGAGAGAACAATACC+GGG | 0.573068 | 5.3:+233167 | MS.gene024987:CDS |
TGCGGCGGTGGGAGTGAATG+GGG | 0.574016 | 5.3:-230254 | None:intergenic |
TTCAACCTTTGATTCGTTTG+GGG | 0.574775 | 5.3:-232741 | None:intergenic |
GGCTGGATGTCAGAAAAGAT+GGG | 0.574997 | 5.3:+234996 | MS.gene024987:CDS |
TGGAAGTGGAGAGGCTGCAG+CGG | 0.577141 | 5.3:-230306 | None:intergenic |
TGATAAATATCACCGCTGAT+GGG | 0.577228 | 5.3:+236599 | MS.gene024987:CDS |
GATGCAAAACTTAATGCAGC+AGG | 0.577530 | 5.3:+234975 | MS.gene024987:CDS |
TTTCTTTCCTAAATGTGTCG+AGG | 0.577640 | 5.3:+230923 | MS.gene024987:CDS |
TTTCTGAATCATCTTCTACT+GGG | 0.580482 | 5.3:+232908 | MS.gene024987:CDS |
CAATTTAGCATTGGAATGAA+GGG | 0.581968 | 5.3:+233025 | MS.gene024987:CDS |
CAAATTTGTCCGTATTCGCA+AGG | 0.584600 | 5.3:-236627 | None:intergenic |
CTCTGGTGGAGAAATGGTTG+CGG | 0.585366 | 5.3:-230381 | None:intergenic |
TACCAAAACAGTGGTACCAA+AGG | 0.585642 | 5.3:-233986 | None:intergenic |
TTCAACTTCAATGGAAAGAG+CGG | 0.586601 | 5.3:+230174 | MS.gene024987:CDS |
CCATTTGTTGAGTTACTCAA+AGG | 0.586706 | 5.3:+230786 | MS.gene024987:CDS |
TTACAATGGACTGGAGCATG+AGG | 0.589145 | 5.3:-233210 | None:intergenic |
CACATCATCAGTGCAGGGCA+AGG | 0.591311 | 5.3:+234533 | MS.gene024987:CDS |
TGATATCTCATCATCTCTTG+AGG | 0.591893 | 5.3:+236540 | MS.gene024987:CDS |
GTTAGTGGTGGAGCTTATGG+AGG | 0.594232 | 5.3:+237432 | MS.gene024987:CDS |
AAATCCGTGAATTGCTGGGA+TGG | 0.594543 | 5.3:-231645 | None:intergenic |
ACTCCTCCCAATGATTCCAC+TGG | 0.595991 | 5.3:+230702 | MS.gene024987:CDS |
AAATCTAAAATAGCAAAGGA+AGG | 0.598062 | 5.3:+233380 | MS.gene024987:CDS |
TATCAACTTCCTGATGCCAA+AGG | 0.598450 | 5.3:+237704 | MS.gene024987:CDS |
CAGGATAAGTGAATGCATTG+AGG | 0.599381 | 5.3:-230824 | None:intergenic |
GAAGAAAGGCAAAAGAGACG+TGG | 0.599903 | 5.3:+237921 | MS.gene024987:CDS |
CCTGAAATCTAAAATAGCAA+AGG | 0.600462 | 5.3:+233376 | MS.gene024987:CDS |
TGGTGGTGGCGAAGTAGTGA+AGG | 0.601630 | 5.3:+230521 | MS.gene024987:CDS |
TAAGTCTCAACAATCCGGAC+TGG | 0.602105 | 5.3:-232785 | None:intergenic |
ACAATAGCTTCATTTGTCAA+CGG | 0.602200 | 5.3:-236721 | None:intergenic |
TAGAACCGGCTAAGAGGCAG+TGG | 0.603061 | 5.3:+234927 | MS.gene024987:intron |
TGGTATTGGTGGAGGCGACA+GGG | 0.606318 | 5.3:-230860 | None:intergenic |
ATCTTGCGGTGGAAGTGGAG+AGG | 0.618421 | 5.3:-230315 | None:intergenic |
GGAAATATAATGGAGATAGG+AGG | 0.619551 | 5.3:+230136 | MS.gene024987:CDS |
ATCTCCAGATGATGTAGATG+CGG | 0.619830 | 5.3:+238448 | MS.gene024987:CDS |
ATATCTTGAAGAGAAAGACT+AGG | 0.619984 | 5.3:-233739 | None:intergenic |
GGAAGCAGTTAAGGATAAAG+GGG | 0.620127 | 5.3:+238409 | MS.gene024987:CDS |
TAAAGGGGTTGTGGTTGCAG+TGG | 0.620471 | 5.3:+238424 | MS.gene024987:CDS |
ATGTAGGTTGGGGATATCAA+CGG | 0.621061 | 5.3:+233872 | MS.gene024987:intron |
AAAGCAATGATAACCTCAGT+GGG | 0.622193 | 5.3:-233784 | None:intergenic |
GAATGGGGATAGAACGGAGG+GGG | 0.623314 | 5.3:-230239 | None:intergenic |
TGAATGGGGATAGAACGGAG+GGG | 0.623959 | 5.3:-230240 | None:intergenic |
GTCAACTTAGGAATAACTTG+AGG | 0.627900 | 5.3:-231306 | None:intergenic |
TTATAAGTGATATCTTCAGA+AGG | 0.629909 | 5.3:-230993 | None:intergenic |
CCATTCACATCATCAGTGCA+GGG | 0.631490 | 5.3:+234528 | MS.gene024987:CDS |
TTAGATTTCAGGTCTTGGAG+AGG | 0.632896 | 5.3:-233365 | None:intergenic |
AACACATATGGCGTTGACAG+CGG | 0.635027 | 5.3:+231276 | MS.gene024987:CDS |
GATTGTTCGAGGCAAAGCCA+TGG | 0.636417 | 5.3:+234575 | MS.gene024987:CDS |
ATAACCAGCATCATAAACGT+TGG | 0.637210 | 5.3:-237340 | None:intergenic |
ATTGCTGGAGATGGGCACAA+AGG | 0.637711 | 5.3:+234443 | MS.gene024987:CDS |
TGTTGAGACTTACCCTGCAG+GGG | 0.638158 | 5.3:+232796 | MS.gene024987:CDS |
ACGTTCAATTTACAGACCAA+CGG | 0.638686 | 5.3:+234763 | MS.gene024987:CDS |
GAGCGCCTCCGCATCCTGAG+TGG | 0.649913 | 5.3:+231694 | MS.gene024987:CDS |
ATAGGAGTCTACATCCCCAA+TGG | 0.650682 | 5.3:-237684 | None:intergenic |
TGCTGGGATGGTAATACTTG+CGG | 0.652158 | 5.3:-231633 | None:intergenic |
AGAAGAAAGCAATCTTGCGG+TGG | 0.653139 | 5.3:-230326 | None:intergenic |
ACACTGTGCTCTAAAATGTG+AGG | 0.655510 | 5.3:-230729 | None:intergenic |
CCAGAGTAGAGCAAGAATGG+AGG | 0.655893 | 5.3:+234806 | MS.gene024987:CDS |
GTCATGGAATTGCAGCTGCA+AGG | 0.656712 | 5.3:+234949 | MS.gene024987:CDS |
GTTGTGTTTAATGAGATGAA+GGG | 0.658075 | 5.3:+231098 | MS.gene024987:CDS |
TGTCGCCTCCACCAATACCA+AGG | 0.663038 | 5.3:+230863 | MS.gene024987:CDS |
TACAATGGACTGGAGCATGA+GGG | 0.669294 | 5.3:-233209 | None:intergenic |
TATTACCACTCAGGATGCGG+AGG | 0.669703 | 5.3:-231699 | None:intergenic |
ACATATGGCGTTGACAGCGG+AGG | 0.673297 | 5.3:+231279 | MS.gene024987:CDS |
CATACCTGGAGAAGAAACGA+GGG | 0.675730 | 5.3:-230407 | None:intergenic |
ACTCATGTCGAACACTATGT+CGG | 0.676317 | 5.3:-233942 | None:intergenic |
ACCTATTCATGTTCCCACTG+AGG | 0.677718 | 5.3:+233771 | MS.gene024987:CDS |
CAAGCCACGAGGAAATGACC+CGG | 0.678318 | 5.3:-233185 | None:intergenic |
TAAAATGTGAGGAATACCAG+TGG | 0.680348 | 5.3:-230718 | None:intergenic |
GGGAGATGTATACACGATGG+AGG | 0.682546 | 5.3:+230095 | None:intergenic |
AGCCATAATCGGGACCATTG+GGG | 0.686109 | 5.3:+237670 | MS.gene024987:CDS |
GATCGTGTACGTGTTAGTGG+TGG | 0.686533 | 5.3:+237420 | MS.gene024987:CDS |
ACATACCTGGAGAAGAAACG+AGG | 0.687833 | 5.3:-230408 | None:intergenic |
GAAAGCAATGATAACCTCAG+TGG | 0.691309 | 5.3:-233785 | None:intergenic |
CGGAGGAGAGAACCTTGCGG+CGG | 0.695662 | 5.3:-230269 | None:intergenic |
AGAAGAAGAAAGCAATCTTG+CGG | 0.695847 | 5.3:-230329 | None:intergenic |
ATACCAGTGGAATCATTGGG+AGG | 0.698254 | 5.3:-230705 | None:intergenic |
TAGGGGAGATGTATACACGA+TGG | 0.703466 | 5.3:+230092 | None:intergenic |
TGGATGTCAGAAAAGATGGG+TGG | 0.705171 | 5.3:+234999 | MS.gene024987:CDS |
TTGCATGATTACCAAAACAG+TGG | 0.717400 | 5.3:-233995 | None:intergenic |
CGGTTACGAAAGTAAAAGAG+CGG | 0.719946 | 5.3:-230361 | None:intergenic |
GGTGCGAGAGAAATATCTGG+TGG | 0.721010 | 5.3:-230218 | None:intergenic |
AATACCGGGTCATTTCCTCG+TGG | 0.737191 | 5.3:+233181 | MS.gene024987:CDS |
AGCATGAGGGACAAGCCACG+AGG | 0.739634 | 5.3:-233196 | None:intergenic |
AGTCGGAGGAGAGAACCTTG+CGG | 0.746794 | 5.3:-230272 | None:intergenic |
GTATATACTGGGTATCACAG+AGG | 0.779699 | 5.3:+237899 | MS.gene024987:CDS |
GTGGAGAGATATTATCTACG+AGG | 0.781070 | 5.3:+237940 | MS.gene024987:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 230100 | 238517 | 230100 | ID=MS.gene024987 |
chr5.3 | mRNA | 230100 | 238517 | 230100 | ID=MS.gene024987.t1;Parent=MS.gene024987 |
chr5.3 | exon | 230100 | 230424 | 230100 | ID=MS.gene024987.t1.exon1;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 230100 | 230424 | 230100 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 230517 | 231017 | 230517 | ID=MS.gene024987.t1.exon2;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 230517 | 231017 | 230517 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 231096 | 231166 | 231096 | ID=MS.gene024987.t1.exon3;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 231096 | 231166 | 231096 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 231261 | 231344 | 231261 | ID=MS.gene024987.t1.exon4;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 231261 | 231344 | 231261 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 231625 | 231715 | 231625 | ID=MS.gene024987.t1.exon5;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 231625 | 231715 | 231625 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 232711 | 233228 | 232711 | ID=MS.gene024987.t1.exon6;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 232711 | 233228 | 232711 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 233314 | 233478 | 233314 | ID=MS.gene024987.t1.exon7;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 233314 | 233478 | 233314 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 233574 | 233792 | 233574 | ID=MS.gene024987.t1.exon8;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 233574 | 233792 | 233574 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 233878 | 234005 | 233878 | ID=MS.gene024987.t1.exon9;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 233878 | 234005 | 233878 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 234437 | 234626 | 234437 | ID=MS.gene024987.t1.exon10;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 234437 | 234626 | 234437 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 234744 | 234827 | 234744 | ID=MS.gene024987.t1.exon11;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 234744 | 234827 | 234744 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 234930 | 235027 | 234930 | ID=MS.gene024987.t1.exon12;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 234930 | 235027 | 234930 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 236489 | 236756 | 236489 | ID=MS.gene024987.t1.exon13;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 236489 | 236756 | 236489 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 237318 | 237480 | 237318 | ID=MS.gene024987.t1.exon14;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 237318 | 237480 | 237318 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 237555 | 237735 | 237555 | ID=MS.gene024987.t1.exon15;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 237555 | 237735 | 237555 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 237890 | 237961 | 237890 | ID=MS.gene024987.t1.exon16;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 237890 | 237961 | 237890 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
chr5.3 | exon | 238376 | 238517 | 238376 | ID=MS.gene024987.t1.exon17;Parent=MS.gene024987.t1 |
chr5.3 | CDS | 238376 | 238517 | 238376 | ID=cds.MS.gene024987.t1;Parent=MS.gene024987.t1 |
Gene Sequence |
Protein sequence |