Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92382.t1 | XP_013453279.2 | 98.4 | 1099 | 11 | 2 | 1 | 1099 | 1 | 1092 | 0.00E+00 | 2093.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92382.t1 | Q8VY06 | 80.1 | 979 | 193 | 2 | 121 | 1098 | 101 | 1078 | 0.0e+00 | 1615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92382.t1 | A0A396HIP5 | 98.4 | 1099 | 11 | 2 | 1 | 1099 | 1 | 1092 | 0.0e+00 | 2093.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene92382 | 0.803345 | 3.64E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene92382 | 0.82074 | 5.85E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene92382 | 0.831075 | 2.05E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene92382 | 0.829031 | 6.46E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene92382 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene04939 | MS.gene92382 | 0.818481 | 1.92E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene92382 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene92382 | 0.823054 | 1.70E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene92382 | 0.838923 | 2.15E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene92382 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene92382 | 0.852492 | 4.45E-61 | -1.69E-46 |
| MS.gene050444 | MS.gene92382 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene92382 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene92382 | 0.821637 | 3.63E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene92382 | 0.835637 | 1.49E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene92382 | 0.815605 | 8.48E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene92382 | 0.832334 | 1.00E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene92382 | 0.837952 | 3.84E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene92382 | 0.822666 | 2.10E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene92382 | 0.856696 | 2.70E-62 | -1.69E-46 |
| MS.gene05087 | MS.gene92382 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene92382 | 0.860399 | 2.12E-63 | -1.69E-46 |
| MS.gene050986 | MS.gene92382 | 0.840441 | 8.68E-58 | -1.69E-46 |
| MS.gene051317 | MS.gene92382 | 0.843104 | 1.72E-58 | -1.69E-46 |
| MS.gene052482 | MS.gene92382 | 0.829715 | 4.41E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene92382 | 0.848131 | 7.45E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene92382 | 0.80938 | 1.95E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene92382 | 0.802046 | 6.76E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene92382 | 0.806162 | 9.41E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene92382 | 0.806051 | 9.92E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene92382 | 0.832808 | 7.65E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene92382 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene92382 | 0.815626 | 8.40E-52 | -1.69E-46 |
| MS.gene055634 | MS.gene92382 | 0.836441 | 9.34E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene92382 | 0.817593 | 3.04E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene92382 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene92382 | 0.823667 | 1.22E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene92382 | 0.825619 | 4.25E-54 | -1.69E-46 |
| MS.gene055776 | MS.gene92382 | 0.80391 | 2.78E-49 | -1.69E-46 |
| MS.gene055849 | MS.gene92382 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene92382 | 0.814553 | 1.45E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene92382 | 0.80461 | 1.99E-49 | -1.69E-46 |
| MS.gene056450 | MS.gene92382 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene92382 | 0.841455 | 4.70E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene92382 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene056549 | MS.gene92382 | 0.825708 | 4.05E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene92382 | 0.837226 | 5.89E-57 | -1.69E-46 |
| MS.gene056692 | MS.gene92382 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene92382 | 0.85229 | 5.09E-61 | -1.69E-46 |
| MS.gene057872 | MS.gene92382 | 0.823024 | 1.73E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene92382 | 0.812972 | 3.24E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene92382 | 0.870421 | 1.48E-66 | -1.69E-46 |
| MS.gene059022 | MS.gene92382 | 0.804491 | 2.11E-49 | -1.69E-46 |
| MS.gene059079 | MS.gene92382 | 0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene05912 | MS.gene92382 | 0.841002 | 6.19E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene92382 | 0.819952 | 8.86E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene92382 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene92382 | 0.812091 | 5.05E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene92382 | 0.810947 | 8.95E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene92382 | 0.85188 | 6.65E-61 | -1.69E-46 |
| MS.gene060762 | MS.gene92382 | 0.826944 | 2.05E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene92382 | 0.830519 | 2.81E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene92382 | 0.82308 | 1.68E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene92382 | 0.833346 | 5.62E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92382 | MS.gene024985 | PPI |
| MS.gene92382 | MS.gene046969 | PPI |
| MS.gene92382 | MS.gene024987 | PPI |
| MS.gene046969 | MS.gene92382 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92382.t1 | MTR_5g004680 | 98.247 | 1084 | 12 | 2 | 16 | 1099 | 1 | 1077 | 0.0 | 2189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92382.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
| MS.gene92382.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
| MS.gene92382.t1 | AT1G49630 | 76.007 | 1067 | 239 | 8 | 42 | 1098 | 19 | 1078 | 0.0 | 1675 |
| MS.gene92382.t1 | AT3G19170 | 78.751 | 993 | 203 | 3 | 108 | 1099 | 95 | 1080 | 0.0 | 1667 |
| MS.gene92382.t1 | AT3G19170 | 76.737 | 993 | 212 | 5 | 108 | 1099 | 95 | 1069 | 0.0 | 1613 |
| MS.gene92382.t1 | AT1G49630 | 79.784 | 925 | 185 | 2 | 175 | 1098 | 7 | 930 | 0.0 | 1574 |
| MS.gene92382.t1 | AT1G49630 | 78.034 | 824 | 179 | 2 | 276 | 1098 | 6 | 828 | 0.0 | 1365 |
Find 267 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAACTAAACCAATTAAT+TGG | 0.112942 | 5.1:+72780 | MS.gene92382:CDS |
| CCATGTATTGCTAATGTATT+TGG | 0.135870 | 5.1:-75697 | None:intergenic |
| CCATTGCTACACCAAATATT+TGG | 0.196069 | 5.1:+74992 | MS.gene92382:CDS |
| GTTTGCATATTTAGGGTAAA+TGG | 0.198410 | 5.1:+71598 | MS.gene92382:intron |
| AAGATGAATTTCTCTATTAA+TGG | 0.198802 | 5.1:-71720 | None:intergenic |
| AGTCTAACGTTCCAAATATT+TGG | 0.199487 | 5.1:-75003 | None:intergenic |
| CAGTATGTTGCGGTATATAC+TGG | 0.218929 | 5.1:+76193 | MS.gene92382:intron |
| GGAACATGAATAGGTTCTTT+AGG | 0.245740 | 5.1:-72061 | None:intergenic |
| ATCCCCAATGGTCCCGATTA+TGG | 0.250985 | 5.1:-75978 | None:intergenic |
| TCAACGCCATATGTGTTATC+TGG | 0.257591 | 5.1:-69606 | None:intergenic |
| TTCCTTTGGTACCACTGTTT+TGG | 0.261312 | 5.1:+72282 | MS.gene92382:CDS |
| AGCATATGGTTTCCCTTAAC+TGG | 0.266266 | 5.1:+71135 | MS.gene92382:CDS |
| GATGCTGGTTATAAGCTTAA+TGG | 0.276272 | 5.1:+75657 | MS.gene92382:CDS |
| GTTCAACCTTTGATTCGTTT+GGG | 0.285001 | 5.1:-71040 | None:intergenic |
| TGAACATCCTCGACACATTT+AGG | 0.286941 | 5.1:-69266 | None:intergenic |
| ATCCCAGCAATTCACGGATT+TGG | 0.290483 | 5.1:+69983 | MS.gene92382:CDS |
| GGTTCAACCTTTGATTCGTT+TGG | 0.294249 | 5.1:-71041 | None:intergenic |
| TGGAGAGGCTGCGGCGGCGG+CGG | 0.309278 | 5.1:-68660 | None:intergenic |
| TCCCAATTAATTGGTTTAGT+TGG | 0.315523 | 5.1:-72782 | None:intergenic |
| AAAAGAGAATTGATCAAGAT+TGG | 0.323255 | 5.1:+74821 | MS.gene92382:CDS |
| TCTGAAGATATCACTTATAA+AGG | 0.325491 | 5.1:+69332 | MS.gene92382:CDS |
| TTTCTACAGGTTAATTATGT+TGG | 0.327149 | 5.1:+75615 | MS.gene92382:intron |
| TTCAAAGCTTCTGGTGGATC+AGG | 0.329441 | 5.1:-72007 | None:intergenic |
| GAACATGAATAGGTTCTTTA+GGG | 0.335851 | 5.1:-72060 | None:intergenic |
| CTTGCGGCGGTGGGAGTGAA+TGG | 0.339972 | 5.1:-68616 | None:intergenic |
| AAACCAAATCCGTGAATTGC+TGG | 0.342696 | 5.1:-69986 | None:intergenic |
| ACGAGTTATCGGAAATATAA+TGG | 0.345323 | 5.1:+68486 | MS.gene92382:CDS |
| TAGCTCAGTTTCCAAGTCTA+AGG | 0.346324 | 5.1:-71174 | None:intergenic |
| TAGGATTAATTCAACTTCAA+TGG | 0.349493 | 5.1:+68525 | MS.gene92382:CDS |
| ACTCTTACAAAAGCCATAAT+CGG | 0.362269 | 5.1:+75965 | MS.gene92382:CDS |
| TTCTACAGGTTAATTATGTT+GGG | 0.364723 | 5.1:+75616 | MS.gene92382:intron |
| TGGTGACTTCTTAAGAGAAT+TGG | 0.365879 | 5.1:+75928 | MS.gene92382:CDS |
| GAAGCAAGAGCTTCTTCCTT+TGG | 0.371838 | 5.1:+72268 | MS.gene92382:CDS |
| CCTCCATTCTTGCTCTACTC+TGG | 0.372732 | 5.1:-73109 | None:intergenic |
| AAGCCATAATCGGGACCATT+GGG | 0.373438 | 5.1:+75975 | MS.gene92382:CDS |
| TCCAACTAAACCAATTAATT+GGG | 0.375136 | 5.1:+72781 | MS.gene92382:CDS |
| TCTTCACGAGCAGCTTTCTC+CGG | 0.378170 | 5.1:-71878 | None:intergenic |
| AACGATGAGAACAAAGTCTT+TGG | 0.378667 | 5.1:+69002 | MS.gene92382:CDS |
| TATCAGAGAGCAACCAGTTA+AGG | 0.379114 | 5.1:-71148 | None:intergenic |
| GGTGATGCCATTGTTGGTGG+TGG | 0.386322 | 5.1:+71275 | MS.gene92382:CDS |
| ATGGAAGCAGTTAAGGATAA+AGG | 0.390825 | 5.1:+76713 | MS.gene92382:CDS |
| AAGTAAATCCTGAATTTAAA+GGG | 0.392910 | 5.1:-76816 | None:intergenic |
| TGATGCAATGGAAGCAGTTA+AGG | 0.395124 | 5.1:+76706 | MS.gene92382:CDS |
| ACAGGGTAACAAGTCCTATC+AGG | 0.399059 | 5.1:-69179 | None:intergenic |
| GCTCGTCCAAGTATATTATC+TGG | 0.404875 | 5.1:-69470 | None:intergenic |
| AGAGGCTGCGGCGGCGGCGG+AGG | 0.406562 | 5.1:-68657 | None:intergenic |
| TTTCTTTATTTGAAAGAAGT+TGG | 0.410722 | 5.1:-76792 | None:intergenic |
| ACAATCAGTTCTTCTACCTT+AGG | 0.411433 | 5.1:-71365 | None:intergenic |
| CAAGAGTTTGAAGGAATTCA+AGG | 0.412469 | 5.1:-74798 | None:intergenic |
| TGCCCATCTCCAGCAATGAT+TGG | 0.413819 | 5.1:-72740 | None:intergenic |
| GCTTCCCTCGTTTCTTCTCC+AGG | 0.415645 | 5.1:+68763 | MS.gene92382:CDS |
| TTGCGGCGGTGGGAGTGAAT+GGG | 0.416301 | 5.1:-68615 | None:intergenic |
| GGGATCACGATAAGACAAAA+AGG | 0.416539 | 5.1:-75870 | None:intergenic |
| TCAATTTAGCATTGGAATGA+AGG | 0.416737 | 5.1:+71322 | MS.gene92382:CDS |
| AGGAGAGAACCTTGCGGCGG+TGG | 0.417046 | 5.1:-68626 | None:intergenic |
| AAGTGGAGAGGCTGCGGCGG+CGG | 0.419147 | 5.1:-68663 | None:intergenic |
| TTCCCAGAGTAGAGCAAGAA+TGG | 0.423870 | 5.1:+73106 | MS.gene92382:CDS |
| AGGAATACCAGTGGAATCAT+TGG | 0.427164 | 5.1:-69045 | None:intergenic |
| TTCATACCTACTATAACCTT+TGG | 0.427406 | 5.1:-76026 | None:intergenic |
| TTTGCCGCATCTACATCATC+TGG | 0.430260 | 5.1:-76758 | None:intergenic |
| CTACTATAACCTTTGGCATC+AGG | 0.430815 | 5.1:-76019 | None:intergenic |
| CTTCACGAGCAGCTTTCTCC+GGG | 0.431343 | 5.1:-71877 | None:intergenic |
| TAGCCAATCATTGCTGGAGA+TGG | 0.434077 | 5.1:+72737 | MS.gene92382:intron |
| CAAATATTTGGTGTAGCAAT+GGG | 0.436009 | 5.1:-74991 | None:intergenic |
| ATGCATTCACTTATCCTGAT+AGG | 0.437102 | 5.1:+69165 | MS.gene92382:CDS |
| TTGGTATTGGTGGAGGCGAC+AGG | 0.438623 | 5.1:-69197 | None:intergenic |
| AGGCTGGATGTCAGAAAAGA+TGG | 0.439677 | 5.1:+73299 | MS.gene92382:CDS |
| GATGAAGTTGCGCGTGAACT+AGG | 0.440088 | 5.1:+68879 | MS.gene92382:CDS |
| AGGCAGTATAAACGAGTTAT+CGG | 0.444027 | 5.1:+68475 | MS.gene92382:CDS |
| TGGGATCGTGTACGTGTTAG+TGG | 0.444902 | 5.1:+75723 | MS.gene92382:CDS |
| CCAAATACATTAGCAATACA+TGG | 0.445707 | 5.1:+75697 | MS.gene92382:CDS |
| CGTGTTAGTGGTGGAGCTTA+TGG | 0.451692 | 5.1:+75735 | MS.gene92382:CDS |
| TCCATTCACATCATCAGTGC+AGG | 0.452497 | 5.1:+72830 | MS.gene92382:CDS |
| ATTTATCAAGCACCCTTGCT+TGG | 0.454418 | 5.1:-74890 | None:intergenic |
| GGGTGATTTGAAGAAGCATA+TGG | 0.454425 | 5.1:+71121 | MS.gene92382:CDS |
| AATTCCTCAAAAGTCAACTT+AGG | 0.454491 | 5.1:-69654 | None:intergenic |
| AAAGAGAATTGATCAAGATT+GGG | 0.456112 | 5.1:+74822 | MS.gene92382:CDS |
| AACGGAGAAACAGATATTGC+AGG | 0.457343 | 5.1:+71904 | MS.gene92382:CDS |
| TGGAGATAGGAGGAAGTTGT+AGG | 0.459668 | 5.1:+68506 | MS.gene92382:CDS |
| GACTTACCCTGCAGGGGAAG+GGG | 0.460013 | 5.1:+71100 | MS.gene92382:CDS |
| TTTGGCATCAGGAAGTTGAT+AGG | 0.461058 | 5.1:-76008 | None:intergenic |
| GTAGCAATGGGTGAGCTAGT+AGG | 0.461363 | 5.1:-74979 | None:intergenic |
| CAGAAAAGATGGGTGGTCTC+AGG | 0.461843 | 5.1:+73310 | MS.gene92382:CDS |
| CGAACAATCATGTGACTACA+TGG | 0.462587 | 5.1:-72864 | None:intergenic |
| ACCTCAGTGGGAACATGAAT+AGG | 0.465251 | 5.1:-72070 | None:intergenic |
| TCAAAGCTTCTGGTGGATCA+GGG | 0.465759 | 5.1:-72006 | None:intergenic |
| GGGAAGCTCTGGTGGAGAAA+TGG | 0.467047 | 5.1:-68747 | None:intergenic |
| TTGATAAATATCACCGCTGA+TGG | 0.467919 | 5.1:+74904 | MS.gene92382:CDS |
| AAGTATGACAACAGAAGATC+TGG | 0.468106 | 5.1:+71937 | MS.gene92382:CDS |
| TTTGCACAGTTACTTTATGA+AGG | 0.468347 | 5.1:-71749 | None:intergenic |
| TAGCTTATCTTACAATGGAC+TGG | 0.470042 | 5.1:-71517 | None:intergenic |
| CTCTGATAAGCCCTTAGACT+TGG | 0.470588 | 5.1:+71163 | MS.gene92382:CDS |
| AAGCAATCTTGCGGTGGAAG+TGG | 0.470711 | 5.1:-68680 | None:intergenic |
| CCAAATATTTGGTGTAGCAA+TGG | 0.476193 | 5.1:-74992 | None:intergenic |
| CTGGGTGATGCCATTGTTGG+TGG | 0.476342 | 5.1:+71272 | MS.gene92382:CDS |
| CTCCATTCTTGCTCTACTCT+GGG | 0.476800 | 5.1:-73108 | None:intergenic |
| GCAACCAACGTTTATGATGC+TGG | 0.480406 | 5.1:+75642 | MS.gene92382:CDS |
| TGGAATCATTGGGAGGAGTT+CGG | 0.481246 | 5.1:-69034 | None:intergenic |
| ATCAGAGAGCAACCAGTTAA+GGG | 0.481739 | 5.1:-71147 | None:intergenic |
| CGAGCAGCTTTCTCCGGGTC+CGG | 0.482087 | 5.1:-71872 | None:intergenic |
| TAGCAATGGGTGAGCTAGTA+GGG | 0.482228 | 5.1:-74978 | None:intergenic |
| TTCCAATGCTAAATTGAGGC+TGG | 0.485674 | 5.1:-71316 | None:intergenic |
| CGGCGGCGGCGGAGGAGAGT+CGG | 0.486033 | 5.1:-68649 | None:intergenic |
| CCTTTGAGTAACTCAACAAA+TGG | 0.487250 | 5.1:-69122 | None:intergenic |
| CTCCAGCCTCAATTTAGCAT+TGG | 0.487282 | 5.1:+71314 | MS.gene92382:CDS |
| TGTTGTGTTTAATGAGATGA+AGG | 0.488119 | 5.1:+69433 | MS.gene92382:CDS |
| GAGACTTACCCTGCAGGGGA+AGG | 0.488569 | 5.1:+71098 | MS.gene92382:CDS |
| ATTACCATCCCAGCAATTCA+CGG | 0.488844 | 5.1:+69977 | MS.gene92382:CDS |
| TTCATTCCAATGCTAAATTG+AGG | 0.490681 | 5.1:-71320 | None:intergenic |
| ACTTGGACGAGCTTCTCAAC+AGG | 0.490880 | 5.1:+69481 | MS.gene92382:CDS |
| CTGATGCCAAAGGTTATAGT+AGG | 0.492789 | 5.1:+76020 | MS.gene92382:CDS |
| CATGACCACTGCCTCTTAGC+CGG | 0.493903 | 5.1:-73236 | None:intergenic |
| CGGCTAAGAGGCAGTGGTCA+TGG | 0.495662 | 5.1:+73237 | MS.gene92382:CDS |
| TCTCTGAGAGAGAACAATAC+CGG | 0.497128 | 5.1:+71464 | MS.gene92382:CDS |
| AGACTTACCCTGCAGGGGAA+GGG | 0.497934 | 5.1:+71099 | MS.gene92382:CDS |
| AGGCTGGGTGATGCCATTGT+TGG | 0.499285 | 5.1:+71269 | MS.gene92382:CDS |
| CCCTGCACTGATGATGTGAA+TGG | 0.499450 | 5.1:-72831 | None:intergenic |
| AGAAGAAACGAGGGAAGCTC+TGG | 0.499568 | 5.1:-68758 | None:intergenic |
| ATCGGAAATATAATGGAGAT+AGG | 0.500076 | 5.1:+68493 | MS.gene92382:CDS |
| GTGATGCCATTGTTGGTGGT+GGG | 0.504102 | 5.1:+71276 | MS.gene92382:CDS |
| ACATTAGCAATACATGGTTG+TGG | 0.508197 | 5.1:+75703 | MS.gene92382:CDS |
| GAAATAATCCTTACCTGAGT+AGG | 0.508471 | 5.1:-75054 | None:intergenic |
| TGTATTCATAGAGGCCTCAA+TGG | 0.508835 | 5.1:-71432 | None:intergenic |
| TCTCATACTTCAGTGGCTCA+AGG | 0.509137 | 5.1:-71638 | None:intergenic |
| CGGTGGAAGTGGAGAGGCTG+CGG | 0.510015 | 5.1:-68669 | None:intergenic |
| TGCTGAAGACCTTTATGACT+TGG | 0.510954 | 5.1:+72908 | MS.gene92382:CDS |
| GTCGGTGTAAAGGACATCAT+TGG | 0.511521 | 5.1:-72222 | None:intergenic |
| CAACGCCATATGTGTTATCT+GGG | 0.512122 | 5.1:-69605 | None:intergenic |
| CAAAGCTTCTGGTGGATCAG+GGG | 0.513346 | 5.1:-72005 | None:intergenic |
| GTTCGAGGCAAAGCCATGGC+TGG | 0.513782 | 5.1:+72882 | MS.gene92382:CDS |
| CATTAGCAATACATGGTTGT+GGG | 0.515092 | 5.1:+75704 | MS.gene92382:CDS |
| CTCTTACAAAAGCCATAATC+GGG | 0.515937 | 5.1:+75966 | MS.gene92382:CDS |
| CTCATACTTCAGTGGCTCAA+GGG | 0.517232 | 5.1:-71637 | None:intergenic |
| CTCGAGGTATATGATGGAAC+TGG | 0.518565 | 5.1:+75908 | MS.gene92382:CDS |
| AAAGCCATAATCGGGACCAT+TGG | 0.520667 | 5.1:+75974 | MS.gene92382:CDS |
| ATGAAGTTGCGCGTGAACTA+GGG | 0.520837 | 5.1:+68880 | MS.gene92382:CDS |
| AGGATGCGGAGGCGCTCAGT+TGG | 0.521313 | 5.1:-70024 | None:intergenic |
| TCTCAACCAGATAATATACT+TGG | 0.524955 | 5.1:+69464 | MS.gene92382:CDS |
| AGTTAAGGATAAAGGAGTTG+TGG | 0.525808 | 5.1:+76721 | MS.gene92382:CDS |
| GGAATACCAGTGGAATCATT+GGG | 0.526341 | 5.1:-69044 | None:intergenic |
| AACCAAATCCGTGAATTGCT+GGG | 0.526376 | 5.1:-69985 | None:intergenic |
| GGCTTTGAAAACAGTTTCTG+TGG | 0.526896 | 5.1:-71062 | None:intergenic |
| AGTGAATGGGGATAGAACGG+AGG | 0.527100 | 5.1:-68602 | None:intergenic |
| AAAATCCTTGGTATTGGTGG+AGG | 0.527503 | 5.1:-69204 | None:intergenic |
| AAAACACTCGAGGTATATGA+TGG | 0.528116 | 5.1:+75902 | MS.gene92382:CDS |
| CAAACAATTCATTGATGCAA+TGG | 0.528180 | 5.1:+76694 | MS.gene92382:CDS |
| AGCCAATCATTGCTGGAGAT+GGG | 0.529241 | 5.1:+72738 | MS.gene92382:intron |
| TGGAATTGCAGCTGCAAGGA+TGG | 0.529924 | 5.1:+73257 | MS.gene92382:CDS |
| GACACATTTAGGAAAGAAAA+CGG | 0.531446 | 5.1:-69255 | None:intergenic |
| CATTCACTCCCACCGCCGCA+AGG | 0.531835 | 5.1:+68617 | MS.gene92382:CDS |
| ACTTACCCTGCAGGGGAAGG+GGG | 0.532763 | 5.1:+71101 | MS.gene92382:CDS |
| CAGGGTAAGTCTCAACAATC+CGG | 0.533571 | 5.1:-71088 | None:intergenic |
| TGGGTATCACAGAGGAAGAA+AGG | 0.534259 | 5.1:+76213 | MS.gene92382:CDS |
| CAAAACTTAATGCAGCAGGC+TGG | 0.536922 | 5.1:+73283 | MS.gene92382:CDS |
| TCTTATTACCACTCAGGATG+CGG | 0.538854 | 5.1:-70038 | None:intergenic |
| CAAATTGTTTGAAACGCCGT+TGG | 0.539444 | 5.1:-73082 | None:intergenic |
| TCAAGAGCTTAGGCTTAAGC+AGG | 0.542544 | 5.1:+71979 | MS.gene92382:CDS |
| TGTAGTCACATGATTGTTCG+AGG | 0.543034 | 5.1:+72867 | MS.gene92382:CDS |
| GTCTTCAGCACGTCCAGCCA+TGG | 0.544741 | 5.1:-72895 | None:intergenic |
| AGCTCAGTTTCCAAGTCTAA+GGG | 0.545572 | 5.1:-71173 | None:intergenic |
| CGGCGGCGGAGGAGAGTCGG+AGG | 0.546477 | 5.1:-68646 | None:intergenic |
| AGAAACGAGGGAAGCTCTGG+TGG | 0.546722 | 5.1:-68755 | None:intergenic |
| TGATGTAGATGCGGCAAACA+AGG | 0.548304 | 5.1:+76763 | MS.gene92382:CDS |
| CGAACACTATGTCGGTGTAA+AGG | 0.548343 | 5.1:-72232 | None:intergenic |
| AGCTATTGTGATTCCTACTC+AGG | 0.548772 | 5.1:+75041 | MS.gene92382:CDS |
| TAAAGTAACTGTGCAAATGC+AGG | 0.549237 | 5.1:+71755 | MS.gene92382:CDS |
| CTCGTGCTACTCAAGAGCTT+AGG | 0.550757 | 5.1:+71969 | MS.gene92382:CDS |
| TTCTGAAGATGATATTCCTA+AGG | 0.550957 | 5.1:+71349 | MS.gene92382:CDS |
| TGGAAGTGGAGAGGCTGCGG+CGG | 0.554668 | 5.1:-68666 | None:intergenic |
| AAATTCAATTGTATTCATAG+AGG | 0.555732 | 5.1:-71441 | None:intergenic |
| CTCATCCCCAAACGAATCAA+AGG | 0.557460 | 5.1:+71034 | MS.gene92382:CDS |
| GGAGAGAACCTTGCGGCGGT+GGG | 0.557924 | 5.1:-68625 | None:intergenic |
| AGAGGTTTCTCATACTTCAG+TGG | 0.560168 | 5.1:-71645 | None:intergenic |
| AGTATGTTGCGGTATATACT+GGG | 0.560882 | 5.1:+76194 | MS.gene92382:intron |
| TTGTTGAGACTTACCCTGCA+GGG | 0.561000 | 5.1:+71093 | MS.gene92382:CDS |
| GGGAGTGAATGGGGATAGAA+CGG | 0.561215 | 5.1:-68605 | None:intergenic |
| TCAACAAATGGTTCTTTGAG+AGG | 0.563123 | 5.1:-69110 | None:intergenic |
| TCATACTTCAGTGGCTCAAG+GGG | 0.563562 | 5.1:-71636 | None:intergenic |
| TTCTAACCCACCACCAACAA+TGG | 0.567241 | 5.1:-71282 | None:intergenic |
| ACCAAATCTTATTACCACTC+AGG | 0.568657 | 5.1:-70044 | None:intergenic |
| GTGAATGGGGATAGAACGGA+GGG | 0.568796 | 5.1:-68601 | None:intergenic |
| AGCTGCTCGTGAAGAAGCAA+CGG | 0.568986 | 5.1:+71886 | MS.gene92382:CDS |
| ATTGTTGAGACTTACCCTGC+AGG | 0.572358 | 5.1:+71092 | MS.gene92382:CDS |
| CTCTGAGAGAGAACAATACC+GGG | 0.573068 | 5.1:+71465 | MS.gene92382:CDS |
| TGCGGCGGTGGGAGTGAATG+GGG | 0.574016 | 5.1:-68614 | None:intergenic |
| TTCAACCTTTGATTCGTTTG+GGG | 0.574775 | 5.1:-71039 | None:intergenic |
| GGCTGGATGTCAGAAAAGAT+GGG | 0.574997 | 5.1:+73300 | MS.gene92382:CDS |
| TGATAAATATCACCGCTGAT+GGG | 0.577228 | 5.1:+74905 | MS.gene92382:CDS |
| GATGCAAAACTTAATGCAGC+AGG | 0.577530 | 5.1:+73279 | MS.gene92382:CDS |
| TTTCTTTCCTAAATGTGTCG+AGG | 0.577640 | 5.1:+69259 | MS.gene92382:CDS |
| TTTCTGAATCATCTTCTACT+GGG | 0.580482 | 5.1:+71206 | MS.gene92382:CDS |
| CAATTTAGCATTGGAATGAA+GGG | 0.581968 | 5.1:+71323 | MS.gene92382:CDS |
| CAAATTTGTCCGTATTCGCA+AGG | 0.584600 | 5.1:-74933 | None:intergenic |
| CTCTGGTGGAGAAATGGTTG+CGG | 0.585366 | 5.1:-68741 | None:intergenic |
| TACCAAAACAGTGGTACCAA+AGG | 0.585642 | 5.1:-72284 | None:intergenic |
| TTCAACTTCAATGGAAAGAG+CGG | 0.586601 | 5.1:+68534 | MS.gene92382:CDS |
| CCATTTGTTGAGTTACTCAA+AGG | 0.586706 | 5.1:+69122 | MS.gene92382:CDS |
| TTACAATGGACTGGAGCATG+AGG | 0.589145 | 5.1:-71508 | None:intergenic |
| CACATCATCAGTGCAGGGCA+AGG | 0.591311 | 5.1:+72836 | MS.gene92382:CDS |
| TGATATCTCATCATCTCTTG+AGG | 0.591893 | 5.1:+74846 | MS.gene92382:CDS |
| GTTAGTGGTGGAGCTTATGG+AGG | 0.594232 | 5.1:+75738 | MS.gene92382:CDS |
| AAATCCGTGAATTGCTGGGA+TGG | 0.594543 | 5.1:-69981 | None:intergenic |
| ACTCCTCCCAATGATTCCAC+TGG | 0.595991 | 5.1:+69038 | MS.gene92382:CDS |
| AAATCTAAAATAGCAAAGGA+AGG | 0.598062 | 5.1:+71678 | MS.gene92382:CDS |
| TATCAACTTCCTGATGCCAA+AGG | 0.598450 | 5.1:+76010 | MS.gene92382:CDS |
| CAGGATAAGTGAATGCATTG+AGG | 0.599381 | 5.1:-69160 | None:intergenic |
| GAAGAAAGGCAAAAGAGACG+TGG | 0.599903 | 5.1:+76227 | MS.gene92382:CDS |
| CCTGAAATCTAAAATAGCAA+AGG | 0.600462 | 5.1:+71674 | MS.gene92382:CDS |
| TGGTGGTGGCGAAGTAGTGA+AGG | 0.601630 | 5.1:+68857 | MS.gene92382:CDS |
| TAAGTCTCAACAATCCGGAC+TGG | 0.602105 | 5.1:-71083 | None:intergenic |
| ACAATAGCTTCATTTGTCAA+CGG | 0.602200 | 5.1:-75027 | None:intergenic |
| TAGAACCGGCTAAGAGGCAG+TGG | 0.603061 | 5.1:+73231 | MS.gene92382:intron |
| TGGTATTGGTGGAGGCGACA+GGG | 0.606318 | 5.1:-69196 | None:intergenic |
| ATCTTGCGGTGGAAGTGGAG+AGG | 0.618421 | 5.1:-68675 | None:intergenic |
| GGAAATATAATGGAGATAGG+AGG | 0.619140 | 5.1:+68496 | MS.gene92382:CDS |
| ATCTCCAGATGATGTAGATG+CGG | 0.619830 | 5.1:+76754 | MS.gene92382:CDS |
| ATATCTTGAAGAGAAAGACT+AGG | 0.619984 | 5.1:-72037 | None:intergenic |
| TAAAGGAGTTGTGGTTGCAG+TGG | 0.620471 | 5.1:+76730 | MS.gene92382:CDS |
| ATGTAGGTTGGGGATATCAA+CGG | 0.621061 | 5.1:+72170 | MS.gene92382:intron |
| AAAGCAATGATAACCTCAGT+GGG | 0.622193 | 5.1:-72082 | None:intergenic |
| GAATGGGGATAGAACGGAGG+GGG | 0.623314 | 5.1:-68599 | None:intergenic |
| TGAATGGGGATAGAACGGAG+GGG | 0.623959 | 5.1:-68600 | None:intergenic |
| GTCAACTTAGGAATAACTTG+AGG | 0.627900 | 5.1:-69642 | None:intergenic |
| TTATAAGTGATATCTTCAGA+AGG | 0.629909 | 5.1:-69329 | None:intergenic |
| CCATTCACATCATCAGTGCA+GGG | 0.631490 | 5.1:+72831 | MS.gene92382:CDS |
| TTAGATTTCAGGTCTTGGAG+AGG | 0.632896 | 5.1:-71663 | None:intergenic |
| AACACATATGGCGTTGACAG+CGG | 0.635027 | 5.1:+69612 | MS.gene92382:CDS |
| GATTGTTCGAGGCAAAGCCA+TGG | 0.636417 | 5.1:+72878 | MS.gene92382:CDS |
| ATAACCAGCATCATAAACGT+TGG | 0.637210 | 5.1:-75646 | None:intergenic |
| ATTGCTGGAGATGGGCACAA+AGG | 0.637711 | 5.1:+72746 | MS.gene92382:CDS |
| TGTTGAGACTTACCCTGCAG+GGG | 0.638158 | 5.1:+71094 | MS.gene92382:CDS |
| ACGTTCAATTTACAGACCAA+CGG | 0.638686 | 5.1:+73066 | MS.gene92382:CDS |
| GAGCGCCTCCGCATCCTGAG+TGG | 0.649913 | 5.1:+70030 | MS.gene92382:CDS |
| ATAGGAGTCTACATCCCCAA+TGG | 0.650682 | 5.1:-75990 | None:intergenic |
| TGCTGGGATGGTAATACTTG+CGG | 0.652158 | 5.1:-69969 | None:intergenic |
| AGAAGAAAGCAATCTTGCGG+TGG | 0.653139 | 5.1:-68686 | None:intergenic |
| ACACTGTGCTCTAAAATGTG+AGG | 0.655510 | 5.1:-69065 | None:intergenic |
| CCAGAGTAGAGCAAGAATGG+AGG | 0.655893 | 5.1:+73109 | MS.gene92382:CDS |
| GTCATGGAATTGCAGCTGCA+AGG | 0.656712 | 5.1:+73253 | MS.gene92382:CDS |
| GTTGTGTTTAATGAGATGAA+GGG | 0.658075 | 5.1:+69434 | MS.gene92382:CDS |
| TGTCGCCTCCACCAATACCA+AGG | 0.663038 | 5.1:+69199 | MS.gene92382:CDS |
| TACAATGGACTGGAGCATGA+GGG | 0.669294 | 5.1:-71507 | None:intergenic |
| TATTACCACTCAGGATGCGG+AGG | 0.669703 | 5.1:-70035 | None:intergenic |
| ACATATGGCGTTGACAGCGG+AGG | 0.673297 | 5.1:+69615 | MS.gene92382:CDS |
| CATACCTGGAGAAGAAACGA+GGG | 0.675730 | 5.1:-68767 | None:intergenic |
| ACTCATGTCGAACACTATGT+CGG | 0.676317 | 5.1:-72240 | None:intergenic |
| ACCTATTCATGTTCCCACTG+AGG | 0.677718 | 5.1:+72069 | MS.gene92382:CDS |
| CAAGCCACGAGGAAATGACC+CGG | 0.678318 | 5.1:-71483 | None:intergenic |
| TAAAATGTGAGGAATACCAG+TGG | 0.680348 | 5.1:-69054 | None:intergenic |
| GGGAGATGTATACACGATGG+AGG | 0.682546 | 5.1:+68455 | None:intergenic |
| AGCCATAATCGGGACCATTG+GGG | 0.686109 | 5.1:+75976 | MS.gene92382:CDS |
| GATCGTGTACGTGTTAGTGG+TGG | 0.686533 | 5.1:+75726 | MS.gene92382:CDS |
| ACATACCTGGAGAAGAAACG+AGG | 0.687833 | 5.1:-68768 | None:intergenic |
| GAAAGCAATGATAACCTCAG+TGG | 0.691309 | 5.1:-72083 | None:intergenic |
| CGGAGGAGAGAACCTTGCGG+CGG | 0.695662 | 5.1:-68629 | None:intergenic |
| AGAAGAAGAAAGCAATCTTG+CGG | 0.695847 | 5.1:-68689 | None:intergenic |
| ATACCAGTGGAATCATTGGG+AGG | 0.698254 | 5.1:-69041 | None:intergenic |
| TAGGGGAGATGTATACACGA+TGG | 0.703466 | 5.1:+68452 | None:intergenic |
| TGGATGTCAGAAAAGATGGG+TGG | 0.705171 | 5.1:+73303 | MS.gene92382:CDS |
| TTGCATGATTACCAAAACAG+TGG | 0.717400 | 5.1:-72293 | None:intergenic |
| CGGTTACGAAAGTAAAAGAG+CGG | 0.719946 | 5.1:-68721 | None:intergenic |
| GGTGCGAGAGAAATATCTGG+TGG | 0.721010 | 5.1:-68578 | None:intergenic |
| AATACCGGGTCATTTCCTCG+TGG | 0.737191 | 5.1:+71479 | MS.gene92382:CDS |
| AGCATGAGGGACAAGCCACG+AGG | 0.739634 | 5.1:-71494 | None:intergenic |
| AGTCGGAGGAGAGAACCTTG+CGG | 0.746794 | 5.1:-68632 | None:intergenic |
| GTATATACTGGGTATCACAG+AGG | 0.779699 | 5.1:+76205 | MS.gene92382:CDS |
| GTGGAGAGATATTATCTACG+AGG | 0.781070 | 5.1:+76246 | MS.gene92382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 68460 | 76823 | 68460 | ID=MS.gene92382 |
| chr5.1 | mRNA | 68460 | 76823 | 68460 | ID=MS.gene92382.t1;Parent=MS.gene92382 |
| chr5.1 | exon | 68460 | 68784 | 68460 | ID=MS.gene92382.t1.exon1;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 68460 | 68784 | 68460 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 68853 | 69353 | 68853 | ID=MS.gene92382.t1.exon2;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 68853 | 69353 | 68853 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 69432 | 69502 | 69432 | ID=MS.gene92382.t1.exon3;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 69432 | 69502 | 69432 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 69597 | 69680 | 69597 | ID=MS.gene92382.t1.exon4;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 69597 | 69680 | 69597 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 69961 | 70051 | 69961 | ID=MS.gene92382.t1.exon5;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 69961 | 70051 | 69961 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 71009 | 71526 | 71009 | ID=MS.gene92382.t1.exon6;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 71009 | 71526 | 71009 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 71612 | 71776 | 71612 | ID=MS.gene92382.t1.exon7;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 71612 | 71776 | 71612 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 71872 | 72090 | 71872 | ID=MS.gene92382.t1.exon8;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 71872 | 72090 | 71872 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 72176 | 72303 | 72176 | ID=MS.gene92382.t1.exon9;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 72176 | 72303 | 72176 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 72740 | 72929 | 72740 | ID=MS.gene92382.t1.exon10;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 72740 | 72929 | 72740 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 73047 | 73130 | 73047 | ID=MS.gene92382.t1.exon11;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 73047 | 73130 | 73047 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 73234 | 73331 | 73234 | ID=MS.gene92382.t1.exon12;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 73234 | 73331 | 73234 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 74795 | 75062 | 74795 | ID=MS.gene92382.t1.exon13;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 74795 | 75062 | 74795 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 75624 | 75786 | 75624 | ID=MS.gene92382.t1.exon14;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 75624 | 75786 | 75624 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 75861 | 76041 | 75861 | ID=MS.gene92382.t1.exon15;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 75861 | 76041 | 75861 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 76196 | 76267 | 76196 | ID=MS.gene92382.t1.exon16;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 76196 | 76267 | 76196 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| chr5.1 | exon | 76682 | 76823 | 76682 | ID=MS.gene92382.t1.exon17;Parent=MS.gene92382.t1 |
| chr5.1 | CDS | 76682 | 76823 | 76682 | ID=cds.MS.gene92382.t1;Parent=MS.gene92382.t1 |
| Gene Sequence |
| Protein sequence |
