Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026496.t1 | XP_013466616.1 | 90.7 | 311 | 14 | 1 | 1 | 296 | 1 | 311 | 2.30E-126 | 461.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026496.t1 | Q9LFD5 | 39.7 | 229 | 131 | 3 | 18 | 244 | 7 | 230 | 3.3e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026496.t1 | A0A072VFR7 | 90.7 | 311 | 14 | 1 | 1 | 296 | 1 | 311 | 1.7e-126 | 461.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene021689 | MS.gene026496 | PPI |
MS.gene026496 | MS.gene79606 | PPI |
MS.gene026496 | MS.gene92820 | PPI |
MS.gene043248 | MS.gene026496 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026496.t1 | MTR_1g032860 | 90.997 | 311 | 13 | 1 | 1 | 296 | 1 | 311 | 0.0 | 567 |
MS.gene026496.t1 | MTR_8g105910 | 63.754 | 309 | 95 | 3 | 1 | 292 | 1 | 309 | 4.99e-133 | 380 |
MS.gene026496.t1 | MTR_8g066460 | 54.980 | 251 | 101 | 3 | 23 | 268 | 10 | 253 | 1.01e-88 | 266 |
MS.gene026496.t1 | MTR_8g066460 | 54.980 | 251 | 101 | 3 | 23 | 268 | 26 | 269 | 1.90e-88 | 266 |
MS.gene026496.t1 | MTR_5g029640 | 54.980 | 251 | 101 | 3 | 23 | 268 | 10 | 253 | 5.60e-86 | 265 |
MS.gene026496.t1 | MTR_5g029640 | 54.088 | 159 | 66 | 1 | 115 | 273 | 279 | 430 | 7.55e-47 | 163 |
MS.gene026496.t1 | MTR_7g086080 | 41.350 | 237 | 120 | 2 | 29 | 246 | 16 | 252 | 1.35e-57 | 186 |
MS.gene026496.t1 | MTR_5g039130 | 36.564 | 227 | 120 | 4 | 29 | 235 | 20 | 242 | 1.28e-40 | 142 |
MS.gene026496.t1 | MTR_7g010100 | 32.927 | 246 | 124 | 5 | 23 | 235 | 12 | 249 | 2.10e-33 | 123 |
MS.gene026496.t1 | MTR_5g038107 | 52.830 | 53 | 25 | 0 | 23 | 75 | 10 | 62 | 6.74e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026496.t1 | AT4G17720 | 55.039 | 258 | 102 | 3 | 23 | 273 | 10 | 260 | 4.20e-89 | 268 |
MS.gene026496.t1 | AT1G67950 | 52.091 | 263 | 103 | 3 | 23 | 283 | 35 | 276 | 2.13e-85 | 258 |
MS.gene026496.t1 | AT1G67950 | 52.290 | 262 | 103 | 3 | 23 | 283 | 35 | 275 | 4.08e-85 | 257 |
MS.gene026496.t1 | AT1G67950 | 52.290 | 262 | 103 | 3 | 23 | 283 | 36 | 276 | 5.54e-85 | 256 |
MS.gene026496.t1 | AT5G46870 | 54.741 | 232 | 94 | 1 | 23 | 243 | 10 | 241 | 2.84e-83 | 253 |
MS.gene026496.t1 | AT5G46870 | 54.741 | 232 | 94 | 1 | 23 | 243 | 10 | 241 | 2.84e-83 | 253 |
MS.gene026496.t1 | AT1G67950 | 51.055 | 237 | 94 | 3 | 48 | 283 | 1 | 216 | 2.13e-71 | 220 |
MS.gene026496.t1 | AT5G16840 | 51.339 | 224 | 103 | 3 | 23 | 244 | 12 | 231 | 2.37e-70 | 218 |
MS.gene026496.t1 | AT5G16840 | 51.339 | 224 | 102 | 3 | 23 | 244 | 10 | 228 | 1.59e-69 | 216 |
MS.gene026496.t1 | AT5G16840 | 51.339 | 224 | 102 | 3 | 23 | 244 | 12 | 230 | 2.08e-69 | 216 |
MS.gene026496.t1 | AT5G32450 | 42.437 | 238 | 117 | 3 | 29 | 246 | 17 | 254 | 2.24e-58 | 188 |
MS.gene026496.t1 | AT1G14340 | 36.726 | 226 | 123 | 2 | 28 | 237 | 18 | 239 | 2.17e-38 | 135 |
MS.gene026496.t1 | AT3G01210 | 29.958 | 237 | 129 | 6 | 16 | 223 | 3 | 231 | 1.88e-24 | 99.4 |
MS.gene026496.t1 | AT3G01210 | 29.958 | 237 | 129 | 6 | 16 | 223 | 3 | 231 | 1.88e-24 | 99.4 |
Find 58 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTGCTTATGTTACCTTTA+AGG | 0.148013 | 1.1:-17844373 | MS.gene026496:CDS |
GCTTCTATTGATAATAAAAT+TGG | 0.199716 | 1.1:-17843231 | MS.gene026496:CDS |
GATGAAAGGTATCAGCTTTC+TGG | 0.202281 | 1.1:-17843150 | MS.gene026496:CDS |
GGACTTGAGGGAAGTGCTTC+AGG | 0.208060 | 1.1:+17844140 | None:intergenic |
TGCTCCCTGTGAATCCTTAA+AGG | 0.229047 | 1.1:+17844359 | None:intergenic |
GCTCCACAGCTACACCAAAT+TGG | 0.315541 | 1.1:-17845171 | MS.gene026496:CDS |
TTAATATAGGGTTCTAAGAT+AGG | 0.315670 | 1.1:-17844209 | MS.gene026496:intron |
GAAACATGAACGGTCCAATT+TGG | 0.324781 | 1.1:+17845157 | None:intergenic |
GAGGAAAAGGCAAGTATTGC+TGG | 0.353992 | 1.1:-17843099 | MS.gene026496:CDS |
CTTCAGCTCTTTGATCAGTA+TGG | 0.405023 | 1.1:+17845203 | None:intergenic |
AACTTTGAGGACTCTTTAAA+CGG | 0.410295 | 1.1:-17842886 | MS.gene026496:CDS |
ACGTCTTAACCGGAGCTTCA+TGG | 0.420415 | 1.1:-17843053 | MS.gene026496:CDS |
AGCAATTCTTACGTCTTAAC+CGG | 0.425746 | 1.1:-17843063 | MS.gene026496:CDS |
GACTTGAGGGAAGTGCTTCA+GGG | 0.436600 | 1.1:+17844141 | None:intergenic |
CAATTGAAGACGTTCATCAA+TGG | 0.442418 | 1.1:+17843278 | None:intergenic |
TTAAGTGATAAACTAAGTAT+TGG | 0.445760 | 1.1:-17843207 | MS.gene026496:CDS |
TTGGTACTTACTGGACTTGA+GGG | 0.448945 | 1.1:+17844128 | None:intergenic |
ATTTGGTGTAGCTGTGGAGC+AGG | 0.451544 | 1.1:+17845174 | None:intergenic |
ATCATTTACAGTGAAAGAAA+AGG | 0.453579 | 1.1:-17842934 | MS.gene026496:CDS |
TGTTACCTTTAAGGATTCAC+AGG | 0.482190 | 1.1:-17844364 | MS.gene026496:CDS |
ATATGCTCAGATGAACTTTG+AGG | 0.486324 | 1.1:-17842899 | MS.gene026496:CDS |
TCCGAAAATGACAGTAAAGT+TGG | 0.488241 | 1.1:-17842838 | MS.gene026496:CDS |
AACAACCATTGTCAATGAAA+AGG | 0.489656 | 1.1:-17843184 | MS.gene026496:CDS |
TATTGCTGTTGCTGAGGAAA+AGG | 0.490313 | 1.1:-17843112 | MS.gene026496:CDS |
TCTTAACTGCATCAGCACTT+TGG | 0.494465 | 1.1:+17843376 | None:intergenic |
GGAAGTTGGTACTGCTCCAC+AGG | 0.510179 | 1.1:+17844164 | None:intergenic |
AGAGACAGCAGTTCTCTTGA+CGG | 0.514584 | 1.1:-17844337 | MS.gene026496:intron |
AATAAGTACCATGCTCGCTA+AGG | 0.523837 | 1.1:-17843340 | MS.gene026496:CDS |
AGCTTGTTCAACCTTCTCCA+TGG | 0.525835 | 1.1:+17842975 | None:intergenic |
ATTCGACAGCCATGAAGCTC+CGG | 0.539440 | 1.1:+17843044 | None:intergenic |
AAGTGCTGATGCAGTTAAGA+AGG | 0.541174 | 1.1:-17843373 | MS.gene026496:CDS |
TGTGTTTAGCGTTGTTGCAA+AGG | 0.541874 | 1.1:-17843022 | MS.gene026496:CDS |
AATGAAACCCTTAGCGAGCA+TGG | 0.544910 | 1.1:+17843332 | None:intergenic |
GAACTAACAGGAACTACTGC+AGG | 0.546257 | 1.1:+17842859 | None:intergenic |
TCATTTACAGTGAAAGAAAA+GGG | 0.547122 | 1.1:-17842933 | MS.gene026496:CDS |
TTTGGTACTTACTGGACTTG+AGG | 0.548422 | 1.1:+17844127 | None:intergenic |
CGTTGTTGCAAAGGCAGCTG+AGG | 0.550072 | 1.1:-17843013 | MS.gene026496:CDS |
TGTAGCTGTGGAGCAGGGAA+TGG | 0.560070 | 1.1:+17845180 | None:intergenic |
TTCAATATATTGAGATGCAA+AGG | 0.567772 | 1.1:-17844512 | MS.gene026496:intron |
ACTTGAGGGAAGTGCTTCAG+GGG | 0.569844 | 1.1:+17844142 | None:intergenic |
ATCTGCTATTGCTGTTGCTG+AGG | 0.579383 | 1.1:-17843118 | MS.gene026496:CDS |
AGGTGAAAGAGATGGATGAA+AGG | 0.582201 | 1.1:-17843164 | MS.gene026496:CDS |
ATAAGTACCATGCTCGCTAA+GGG | 0.587078 | 1.1:-17843339 | MS.gene026496:CDS |
GAAGGTTGAACAAGCTGAGG+TGG | 0.587721 | 1.1:-17842968 | MS.gene026496:CDS |
CAGCACGATGACCATGGAGA+AGG | 0.588901 | 1.1:-17842986 | MS.gene026496:CDS |
GGATGTCAGCACGATGACCA+TGG | 0.589946 | 1.1:-17842992 | MS.gene026496:CDS |
CAATGAAAAGGTGAAAGAGA+TGG | 0.594437 | 1.1:-17843172 | MS.gene026496:CDS |
CAGGTGAGATGGTGACATAT+AGG | 0.608640 | 1.1:+17844183 | None:intergenic |
TTACAGTGAAAGAAAAGGGA+CGG | 0.611190 | 1.1:-17842929 | MS.gene026496:CDS |
GTACTGCTCCACAGGTGAGA+TGG | 0.613387 | 1.1:+17844172 | None:intergenic |
GGTCCAATTTGGTGTAGCTG+TGG | 0.621466 | 1.1:+17845168 | None:intergenic |
GGAGAAGGTTGAACAAGCTG+AGG | 0.639161 | 1.1:-17842971 | MS.gene026496:CDS |
GTTACCTTTAAGGATTCACA+GGG | 0.642161 | 1.1:-17844363 | MS.gene026496:CDS |
ACTCACATCTGAAACATGAA+CGG | 0.644889 | 1.1:+17845147 | None:intergenic |
TTTGGTGTAGCTGTGGAGCA+GGG | 0.645204 | 1.1:+17845175 | None:intergenic |
ATATGTCACCATCTCACCTG+TGG | 0.654688 | 1.1:-17844180 | MS.gene026496:CDS |
CTTGAGGGAAGTGCTTCAGG+GGG | 0.674891 | 1.1:+17844143 | None:intergenic |
TTTGAGGACTCTTTAAACGG+CGG | 0.709075 | 1.1:-17842883 | MS.gene026496:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAGATTCATATTATAA+AGG | - | chr1.1:17844644-17844663 | MS.gene026496:intron | 10.0% |
!! | AAATTCAATTAATAACTAGA+TGG | - | chr1.1:17845866-17845885 | MS.gene026496:intron | 15.0% |
!! | AGAATCTTTATTAATTAAGA+GGG | + | chr1.1:17844622-17844641 | None:intergenic | 15.0% |
!! | TAATAGATTACAATTAGTTA+GGG | - | chr1.1:17844508-17844527 | MS.gene026496:intron | 15.0% |
!! | TAGAATCTTTATTAATTAAG+AGG | + | chr1.1:17844623-17844642 | None:intergenic | 15.0% |
!!! | AAGTTTGATTTTTATTCAAT+AGG | - | chr1.1:17843864-17843883 | MS.gene026496:intron | 15.0% |
!!! | ATATATATTTTGTGTTGAAT+AGG | - | chr1.1:17843063-17843082 | MS.gene026496:CDS | 15.0% |
!!! | ATTCTTCGATTTTTAATATA+GGG | - | chr1.1:17845269-17845288 | MS.gene026496:intron | 15.0% |
!!! | TATTCTTCGATTTTTAATAT+AGG | - | chr1.1:17845268-17845287 | MS.gene026496:intron | 15.0% |
!! | AAATCATGAAGTATATCTAT+TGG | - | chr1.1:17844143-17844162 | MS.gene026496:CDS | 20.0% |
!! | AAATCCAAAATCATTTGATT+TGG | - | chr1.1:17844580-17844599 | MS.gene026496:intron | 20.0% |
!! | AACTAATTGTAATCTATTAC+TGG | + | chr1.1:17844507-17844526 | None:intergenic | 20.0% |
!! | GTAATAGATTACAATTAGTT+AGG | - | chr1.1:17844507-17844526 | MS.gene026496:intron | 20.0% |
!! | TTAAGTGATAAACTAAGTAT+TGG | - | chr1.1:17846283-17846302 | MS.gene026496:intron | 20.0% |
!!! | ATGAATTTTTTTGGATCTAA+TGG | - | chr1.1:17843209-17843228 | MS.gene026496:CDS | 20.0% |
!!! | ATGATATTTTGTGAGTAAAT+AGG | + | chr1.1:17844221-17844240 | None:intergenic | 20.0% |
!!! | ATGATTTGCATTTTTTTCAT+CGG | - | chr1.1:17843312-17843331 | MS.gene026496:CDS | 20.0% |
!!! | ATTGGATTTTCATAACATTT+TGG | - | chr1.1:17844117-17844136 | MS.gene026496:intron | 20.0% |
!!! | GCTTCTATTGATAATAAAAT+TGG | - | chr1.1:17846259-17846278 | MS.gene026496:intron | 20.0% |
!!! | TACACAAAAATGTTTTACAT+GGG | + | chr1.1:17845846-17845865 | None:intergenic | 20.0% |
!!! | TATGAGCTTTTATTTTTGAT+TGG | - | chr1.1:17844099-17844118 | MS.gene026496:intron | 20.0% |
!!! | TATTTCAGATTTGTTTTGTT+CGG | - | chr1.1:17844690-17844709 | MS.gene026496:intron | 20.0% |
!!! | TTACACAAAAATGTTTTACA+TGG | + | chr1.1:17845847-17845866 | None:intergenic | 20.0% |
!!! | TTTTCAAAAGCAATACTTAT+TGG | + | chr1.1:17843180-17843199 | None:intergenic | 20.0% |
!!! | TTTTTGCTGATGAATTTTTT+TGG | - | chr1.1:17843200-17843219 | MS.gene026496:CDS | 20.0% |
!!! | TTTTTTTTAGATAGTAGCAT+TGG | - | chr1.1:17844369-17844388 | MS.gene026496:CDS | 20.0% |
! | AACCATTCATTAAATTTACC+CGG | + | chr1.1:17843352-17843371 | None:intergenic | 25.0% |
! | ACATGACTTAAAAATTGATG+TGG | + | chr1.1:17845245-17845264 | None:intergenic | 25.0% |
! | ATCATTTACAGTGAAAGAAA+AGG | - | chr1.1:17846556-17846575 | MS.gene026496:intron | 25.0% |
! | CTATTAATATGATAGAGTTC+CGG | + | chr1.1:17843993-17844012 | None:intergenic | 25.0% |
! | GCACACAAAATGTTAAATTA+AGG | + | chr1.1:17844254-17844273 | None:intergenic | 25.0% |
! | TAATGTCACAAAATCTCATA+TGG | - | chr1.1:17845770-17845789 | MS.gene026496:intron | 25.0% |
! | TAATTGTAATATACCTGATC+AGG | - | chr1.1:17844401-17844420 | MS.gene026496:intron | 25.0% |
! | TCATTTACAGTGAAAGAAAA+GGG | - | chr1.1:17846557-17846576 | MS.gene026496:intron | 25.0% |
! | TTATCTGTACGAAATGAAAA+TGG | + | chr1.1:17844880-17844899 | None:intergenic | 25.0% |
! | TTATTTAGTGTATGCAATTG+AGG | - | chr1.1:17845407-17845426 | MS.gene026496:intron | 25.0% |
! | TTCAATATATTGAGATGCAA+AGG | - | chr1.1:17844978-17844997 | MS.gene026496:intron | 25.0% |
! | TTGCATACACTAAATAACAT+AGG | + | chr1.1:17845404-17845423 | None:intergenic | 25.0% |
!! | AAGTGCATTTTATAGGAAAA+AGG | - | chr1.1:17843423-17843442 | MS.gene026496:intron | 25.0% |
!! | AATTAGTTAGGGTGTTAAAA+TGG | - | chr1.1:17844519-17844538 | MS.gene026496:CDS | 25.0% |
!! | AGTGCATTTTATAGGAAAAA+GGG | - | chr1.1:17843424-17843443 | MS.gene026496:intron | 25.0% |
!! | ATTAGTTAGGGTGTTAAAAT+GGG | - | chr1.1:17844520-17844539 | MS.gene026496:CDS | 25.0% |
!! | CATCAGAAATATCTGAAATA+TGG | + | chr1.1:17844841-17844860 | None:intergenic | 25.0% |
!! | GTTTCCAAATCAAATGATTT+TGG | + | chr1.1:17844587-17844606 | None:intergenic | 25.0% |
!! | TAATTTAACATTTTGTGTGC+AGG | - | chr1.1:17844254-17844273 | MS.gene026496:intron | 25.0% |
!! | TGAAGAATTCTTTTCATTCT+CGG | - | chr1.1:17844949-17844968 | MS.gene026496:intron | 25.0% |
!! | TTTTCAAACTATGCTATTGT+TGG | + | chr1.1:17843793-17843812 | None:intergenic | 25.0% |
!!! | TACTAAGTGTTTTTGAATAC+TGG | - | chr1.1:17843543-17843562 | MS.gene026496:intron | 25.0% |
!!! | TGATTTGCATTTTTTTCATC+GGG | - | chr1.1:17843313-17843332 | MS.gene026496:CDS | 25.0% |
!!! | TGTTAAATTAAGGTATTGCT+TGG | + | chr1.1:17844244-17844263 | None:intergenic | 25.0% |
!!! | TTAATATAGGGTTCTAAGAT+AGG | - | chr1.1:17845281-17845300 | MS.gene026496:intron | 25.0% |
AACAACCATTGTCAATGAAA+AGG | - | chr1.1:17846306-17846325 | MS.gene026496:intron | 30.0% | |
AATTCTTGTTCCATCATAGT+GGG | + | chr1.1:17842968-17842987 | None:intergenic | 30.0% | |
ACTGTGCATTTCATAGTAAT+GGG | - | chr1.1:17845214-17845233 | MS.gene026496:CDS | 30.0% | |
AGTTGCTTATGTTACCTTTA+AGG | - | chr1.1:17845117-17845136 | MS.gene026496:intron | 30.0% | |
ATATGAAGTATGAGATGCAA+AGG | + | chr1.1:17843908-17843927 | None:intergenic | 30.0% | |
ATCCGGGTAAATTTAATGAA+TGG | - | chr1.1:17843347-17843366 | MS.gene026496:CDS | 30.0% | |
CAAATTAACTTTAGTGTCCT+AGG | - | chr1.1:17845799-17845818 | MS.gene026496:intron | 30.0% | |
CTAGGACACTAAAGTTAATT+TGG | + | chr1.1:17845801-17845820 | None:intergenic | 30.0% | |
CTTGATATAACCTTTCATCT+TGG | - | chr1.1:17844024-17844043 | MS.gene026496:intron | 30.0% | |
GCAAATAATGCAAACATGTT+CGG | + | chr1.1:17845503-17845522 | None:intergenic | 30.0% | |
GCACAGTAAAATTTCAAATG+CGG | + | chr1.1:17845201-17845220 | None:intergenic | 30.0% | |
TACAACTAAAATACCAACAC+AGG | + | chr1.1:17844797-17844816 | None:intergenic | 30.0% | |
TACTGTGCATTTCATAGTAA+TGG | - | chr1.1:17845213-17845232 | MS.gene026496:CDS | 30.0% | |
TATGTCAGAAAACAAACCAA+AGG | + | chr1.1:17844067-17844086 | None:intergenic | 30.0% | |
TCATATCACATAAAAGCTTG+AGG | + | chr1.1:17843270-17843289 | None:intergenic | 30.0% | |
TGTGGTTAATATCTTTGTCT+GGG | - | chr1.1:17845658-17845677 | MS.gene026496:intron | 30.0% | |
TTGCAGTCAAATTTATAGTG+TGG | - | chr1.1:17845640-17845659 | MS.gene026496:intron | 30.0% | |
TTGGAAAGAACCAATTCAAA+TGG | + | chr1.1:17843970-17843989 | None:intergenic | 30.0% | |
! | AAATTTTCCCTTCACTTTGT+TGG | - | chr1.1:17846014-17846033 | MS.gene026496:intron | 30.0% |
! | AACACTGATTGGAAAATTGA+GGG | - | chr1.1:17843829-17843848 | MS.gene026496:intron | 30.0% |
! | AACTTTGAGGACTCTTTAAA+CGG | - | chr1.1:17846604-17846623 | MS.gene026496:intron | 30.0% |
! | ATGGTTTAAAACCTGAAACT+AGG | + | chr1.1:17845608-17845627 | None:intergenic | 30.0% |
! | GAAGAATTCTTTTCATTCTC+GGG | - | chr1.1:17844950-17844969 | MS.gene026496:intron | 30.0% |
! | GACAACGAAACTGATATTTT+TGG | + | chr1.1:17845525-17845544 | None:intergenic | 30.0% |
! | GATTTTGTGACATTATCTTC+AGG | + | chr1.1:17845765-17845784 | None:intergenic | 30.0% |
! | GGATTTTCATAACATTTTGG+TGG | - | chr1.1:17844120-17844139 | MS.gene026496:intron | 30.0% |
! | GTGAAGGGAAAATTTTATAC+AGG | + | chr1.1:17846009-17846028 | None:intergenic | 30.0% |
! | TCCAACATTTTATCCATTCA+CGG | + | chr1.1:17843643-17843662 | None:intergenic | 30.0% |
! | TTTCACCTTTTCATTGACAA+TGG | + | chr1.1:17846314-17846333 | None:intergenic | 30.0% |
!! | ATCGGGTATATTTTGTTATC+CGG | - | chr1.1:17843330-17843349 | MS.gene026496:CDS | 30.0% |
!! | ATTGCAGTTTTGTCAAATAG+AGG | - | chr1.1:17843464-17843483 | MS.gene026496:intron | 30.0% |
!! | GCTATAATCTTGGTTACTTT+TGG | - | chr1.1:17844733-17844752 | MS.gene026496:intron | 30.0% |
!! | TAAGGGTTTCATTTTAGGAA+AGG | - | chr1.1:17846168-17846187 | MS.gene026496:intron | 30.0% |
!! | TTATTGACTATTGGTTCCTT+TGG | - | chr1.1:17844048-17844067 | MS.gene026496:intron | 30.0% |
!!! | ACCAACTTTACTGTCATTTT+CGG | + | chr1.1:17846656-17846675 | None:intergenic | 30.0% |
!!! | GTTTCAGGTTTTAAACCATA+TGG | - | chr1.1:17845609-17845628 | MS.gene026496:intron | 30.0% |
AAACCCAACAACTATGCTAA+AGG | + | chr1.1:17843587-17843606 | None:intergenic | 35.0% | |
AACCCAACAACTATGCTAAA+GGG | + | chr1.1:17843586-17843605 | None:intergenic | 35.0% | |
AAGAATCAAGAAACCCATGA+AGG | + | chr1.1:17842904-17842923 | None:intergenic | 35.0% | |
AAGTCTCTATCAGATCTATC+TGG | + | chr1.1:17845946-17845965 | None:intergenic | 35.0% | |
AATTCGCAAGCCATTTGAAT+TGG | - | chr1.1:17843957-17843976 | MS.gene026496:intron | 35.0% | |
ACGATTTCCAACAAAGTGAA+GGG | + | chr1.1:17846024-17846043 | None:intergenic | 35.0% | |
ACTGCAATAGTTTAGCCATA+TGG | + | chr1.1:17845627-17845646 | None:intergenic | 35.0% | |
AGCAATTCTTACGTCTTAAC+CGG | - | chr1.1:17846427-17846446 | MS.gene026496:intron | 35.0% | |
AGGATAAAGTAGCAGCAATT+TGG | + | chr1.1:17845384-17845403 | None:intergenic | 35.0% | |
AGTCAATAAGCCAAGATGAA+AGG | + | chr1.1:17844037-17844056 | None:intergenic | 35.0% | |
ATAAAGGAACCGAAGATGAT+CGG | - | chr1.1:17844660-17844679 | MS.gene026496:intron | 35.0% | |
ATATGCTCAGATGAACTTTG+AGG | - | chr1.1:17846591-17846610 | MS.gene026496:intron | 35.0% | |
CAATGAAAAGGTGAAAGAGA+TGG | - | chr1.1:17846318-17846337 | MS.gene026496:intron | 35.0% | |
CAATTCTTGTTCCATCATAG+TGG | + | chr1.1:17842969-17842988 | None:intergenic | 35.0% | |
CAATTGAAGACGTTCATCAA+TGG | + | chr1.1:17846215-17846234 | None:intergenic | 35.0% | |
CTCACTTAACGACATAGAAA+TGG | + | chr1.1:17845461-17845480 | None:intergenic | 35.0% | |
CTGATCAGGAATCAATGTTA+GGG | - | chr1.1:17844415-17844434 | MS.gene026496:intron | 35.0% | |
GCAAACAAAGTAACGAACAA+TGG | + | chr1.1:17844199-17844218 | None:intergenic | 35.0% | |
GTGTGGTTAATATCTTTGTC+TGG | - | chr1.1:17845657-17845676 | MS.gene026496:intron | 35.0% | |
TAATATGATAGAGTTCCGGT+TGG | + | chr1.1:17843989-17844008 | None:intergenic | 35.0% | |
TACGATTTCCAACAAAGTGA+AGG | + | chr1.1:17846025-17846044 | None:intergenic | 35.0% | |
TAGGAGATTTCGAACTGTAA+TGG | - | chr1.1:17843082-17843101 | MS.gene026496:CDS | 35.0% | |
TCCGAAAATGACAGTAAAGT+TGG | - | chr1.1:17846652-17846671 | MS.gene026496:intron | 35.0% | |
TCTGCAGAATTACAACCAAA+GGG | + | chr1.1:17845080-17845099 | None:intergenic | 35.0% | |
TTACAGTGAAAGAAAAGGGA+CGG | - | chr1.1:17846561-17846580 | MS.gene026496:intron | 35.0% | |
TTATCCTAAATGTCACCCTT+TGG | - | chr1.1:17845062-17845081 | MS.gene026496:intron | 35.0% | |
! | ACTCACATCTGAAACATGAA+CGG | + | chr1.1:17844346-17844365 | None:intergenic | 35.0% |
! | CAACACTGATTGGAAAATTG+AGG | - | chr1.1:17843828-17843847 | MS.gene026496:intron | 35.0% |
! | CATCTTGGCTTATTGACTAT+TGG | - | chr1.1:17844039-17844058 | MS.gene026496:intron | 35.0% |
! | CCAACATTTTATCCATTCAC+GGG | + | chr1.1:17843642-17843661 | None:intergenic | 35.0% |
! | GCTCATCAAGTGCATTTTAT+AGG | - | chr1.1:17843416-17843435 | MS.gene026496:intron | 35.0% |
! | GTTACCTTTAAGGATTCACA+GGG | - | chr1.1:17845127-17845146 | MS.gene026496:intron | 35.0% |
! | TAGTCTTTTCCGATCATCTT+CGG | + | chr1.1:17844672-17844691 | None:intergenic | 35.0% |
! | TCAATGTTAGGGTTTTCAGA+AGG | - | chr1.1:17844426-17844445 | MS.gene026496:intron | 35.0% |
! | TGTTACCTTTAAGGATTCAC+AGG | - | chr1.1:17845126-17845145 | MS.gene026496:intron | 35.0% |
! | TTGAATTGGTTCTTTCCAAC+CGG | - | chr1.1:17843971-17843990 | MS.gene026496:intron | 35.0% |
! | TTTTTGAATACTGGCCATTG+TGG | - | chr1.1:17843552-17843571 | MS.gene026496:intron | 35.0% |
!! | AATGGACTAGCATAAGACAA+TGG | + | chr1.1:17845443-17845462 | None:intergenic | 35.0% |
!! | GGCTGATTTTGCTATAATCT+TGG | - | chr1.1:17844723-17844742 | MS.gene026496:intron | 35.0% |
!! | GTTTTGTTCGGAAGATAAGT+TGG | - | chr1.1:17844702-17844721 | MS.gene026496:intron | 35.0% |
!! | TCGGGTATATTTTGTTATCC+GGG | - | chr1.1:17843331-17843350 | MS.gene026496:CDS | 35.0% |
!! | TCTATTGGTTTCTGATGAAC+TGG | - | chr1.1:17844158-17844177 | MS.gene026496:CDS | 35.0% |
AAATACCAACACAGGACACT+AGG | + | chr1.1:17844789-17844808 | None:intergenic | 40.0% | |
AACCCATGAAGGATCTGAAA+CGG | + | chr1.1:17842893-17842912 | None:intergenic | 40.0% | |
AATAAGTACCATGCTCGCTA+AGG | - | chr1.1:17846150-17846169 | MS.gene026496:intron | 40.0% | |
AATACCAACACAGGACACTA+GGG | + | chr1.1:17844788-17844807 | None:intergenic | 40.0% | |
ACAACCAAAGGGTGACATTT+AGG | + | chr1.1:17845069-17845088 | None:intergenic | 40.0% | |
ACAAGAAATGAGAAGAGCAG+AGG | + | chr1.1:17842845-17842864 | None:intergenic | 40.0% | |
ACCATTTCGACAACACTGAT+TGG | - | chr1.1:17843818-17843837 | MS.gene026496:intron | 40.0% | |
ACTAGGGCACAGATAAGAAT+CGG | + | chr1.1:17844772-17844791 | None:intergenic | 40.0% | |
AGCAGCAATTTGGTACTTAC+TGG | + | chr1.1:17845374-17845393 | None:intergenic | 40.0% | |
AGCCCTTTAGCATAGTTGTT+GGG | - | chr1.1:17843581-17843600 | MS.gene026496:intron | 40.0% | |
AGGTGAAAGAGATGGATGAA+AGG | - | chr1.1:17846326-17846345 | MS.gene026496:intron | 40.0% | |
ATAACTAGATGGCTACACTG+TGG | - | chr1.1:17845877-17845896 | MS.gene026496:intron | 40.0% | |
ATAAGTACCATGCTCGCTAA+GGG | - | chr1.1:17846151-17846170 | MS.gene026496:intron | 40.0% | |
CAAGAAATGAGAAGAGCAGA+GGG | + | chr1.1:17842844-17842863 | None:intergenic | 40.0% | |
CAGTACTGCATATAAGTTGC+TGG | + | chr1.1:17845729-17845748 | None:intergenic | 40.0% | |
CATAAACAGTAGCAGGGTAA+CGG | - | chr1.1:17844471-17844490 | MS.gene026496:intron | 40.0% | |
CCCGTGAATGGATAAAATGT+TGG | - | chr1.1:17843639-17843658 | MS.gene026496:intron | 40.0% | |
CCTGATCAGGAATCAATGTT+AGG | - | chr1.1:17844414-17844433 | MS.gene026496:intron | 40.0% | |
CTCTGCAGAATTACAACCAA+AGG | + | chr1.1:17845081-17845100 | None:intergenic | 40.0% | |
CTTCAGCTCTTTGATCAGTA+TGG | + | chr1.1:17844290-17844309 | None:intergenic | 40.0% | |
GAAACATGAACGGTCCAATT+TGG | + | chr1.1:17844336-17844355 | None:intergenic | 40.0% | |
GAACAATGGCAATGACAAGA+GGG | + | chr1.1:17844185-17844204 | None:intergenic | 40.0% | |
GAATTCTTCAATGTCCTGCT+AGG | + | chr1.1:17844939-17844958 | None:intergenic | 40.0% | |
TAACTAGATGGCTACACTGT+GGG | - | chr1.1:17845878-17845897 | MS.gene026496:intron | 40.0% | |
TAGCCCTTTAGCATAGTTGT+TGG | - | chr1.1:17843580-17843599 | MS.gene026496:intron | 40.0% | |
TCCAATCAGTGTTGTCGAAA+TGG | + | chr1.1:17843822-17843841 | None:intergenic | 40.0% | |
TCTTAACTGCATCAGCACTT+TGG | + | chr1.1:17846117-17846136 | None:intergenic | 40.0% | |
TGAAACGGAAAGAAAGTGGA+TGG | + | chr1.1:17842878-17842897 | None:intergenic | 40.0% | |
TGTGTTTAGCGTTGTTGCAA+AGG | - | chr1.1:17846468-17846487 | MS.gene026496:intron | 40.0% | |
TTCCGTTTCAGATCCTTCAT+GGG | - | chr1.1:17842888-17842907 | MS.gene026496:CDS | 40.0% | |
TTGGTACTTACTGGACTTGA+GGG | + | chr1.1:17845365-17845384 | None:intergenic | 40.0% | |
TTTCCGTTTCAGATCCTTCA+TGG | - | chr1.1:17842887-17842906 | MS.gene026496:CDS | 40.0% | |
TTTGAGGACTCTTTAAACGG+CGG | - | chr1.1:17846607-17846626 | MS.gene026496:intron | 40.0% | |
TTTGATTCTGCTATGAGCCT+AGG | + | chr1.1:17845819-17845838 | None:intergenic | 40.0% | |
TTTGGTACTTACTGGACTTG+AGG | + | chr1.1:17845366-17845385 | None:intergenic | 40.0% | |
! | AGTTGTTGGGTTTCAAGTGT+GGG | - | chr1.1:17843594-17843613 | MS.gene026496:intron | 40.0% |
! | ATCACTGATTACTTCCTAGC+AGG | - | chr1.1:17844922-17844941 | MS.gene026496:intron | 40.0% |
! | CTCGCTAAGGGTTTCATTTT+AGG | - | chr1.1:17846163-17846182 | MS.gene026496:intron | 40.0% |
! | GATCTGAAACGGAAAGAAAG+TGG | + | chr1.1:17842882-17842901 | None:intergenic | 40.0% |
! | TAGTTGTTGGGTTTCAAGTG+TGG | - | chr1.1:17843593-17843612 | MS.gene026496:intron | 40.0% |
! | TATTGCTGTTGCTGAGGAAA+AGG | - | chr1.1:17846378-17846397 | MS.gene026496:intron | 40.0% |
!! | AAGTGCTGATGCAGTTAAGA+AGG | - | chr1.1:17846117-17846136 | MS.gene026496:intron | 40.0% |
!! | CCTAACATTGATTCCTGATC+AGG | + | chr1.1:17844417-17844436 | None:intergenic | 40.0% |
!! | GATGAAAGGTATCAGCTTTC+TGG | - | chr1.1:17846340-17846359 | MS.gene026496:intron | 40.0% |
!! | TACACTGTGGGTGTTGTTTA+TGG | - | chr1.1:17845890-17845909 | MS.gene026496:intron | 40.0% |
!!! | CTGTCATTTTCGGAACTAAC+AGG | + | chr1.1:17846646-17846665 | None:intergenic | 40.0% |
AAAGGGCTATAGTGCCACAA+TGG | + | chr1.1:17843569-17843588 | None:intergenic | 45.0% | |
AACCTAACGCTAACGCCTTA+AGG | - | chr1.1:17843685-17843704 | MS.gene026496:intron | 45.0% | |
AATGAAACCCTTAGCGAGCA+TGG | + | chr1.1:17846161-17846180 | None:intergenic | 45.0% | |
ACAAGCTGAGGTGGAAAAAC+AGG | - | chr1.1:17846531-17846550 | MS.gene026496:intron | 45.0% | |
AGAGACAGCAGTTCTCTTGA+CGG | - | chr1.1:17845153-17845172 | MS.gene026496:CDS | 45.0% | |
ATATGTCACCATCTCACCTG+TGG | - | chr1.1:17845310-17845329 | MS.gene026496:intron | 45.0% | |
CAGGTGAGATGGTGACATAT+AGG | + | chr1.1:17845310-17845329 | None:intergenic | 45.0% | |
CATCTCCACCCAAAACCTTA+AGG | + | chr1.1:17843703-17843722 | None:intergenic | 45.0% | |
CGAACAATGGCAATGACAAG+AGG | + | chr1.1:17844186-17844205 | None:intergenic | 45.0% | |
CGTTACCCTGCTACTGTTTA+TGG | + | chr1.1:17844473-17844492 | None:intergenic | 45.0% | |
GAACTAACAGGAACTACTGC+AGG | + | chr1.1:17846634-17846653 | None:intergenic | 45.0% | |
GATTGGAAAATTGAGGGTCG+AGG | - | chr1.1:17843835-17843854 | MS.gene026496:intron | 45.0% | |
GCATGCCATAAACAGTAGCA+GGG | - | chr1.1:17844465-17844484 | MS.gene026496:intron | 45.0% | |
GCTATTGTTGGAGAGTCTAG+AGG | + | chr1.1:17843781-17843800 | None:intergenic | 45.0% | |
GTAACGTGTTCCCACTATGA+TGG | - | chr1.1:17842955-17842974 | MS.gene026496:CDS | 45.0% | |
TGCATGCCATAAACAGTAGC+AGG | - | chr1.1:17844464-17844483 | MS.gene026496:intron | 45.0% | |
TGCTCCCTGTGAATCCTTAA+AGG | + | chr1.1:17845134-17845153 | None:intergenic | 45.0% | |
! | AACCTTAAGGCGTTAGCGTT+AGG | + | chr1.1:17843690-17843709 | None:intergenic | 45.0% |
! | ACGCTAACGCCTTAAGGTTT+TGG | - | chr1.1:17843691-17843710 | MS.gene026496:intron | 45.0% |
! | AGCTTGTTCAACCTTCTCCA+TGG | + | chr1.1:17846518-17846537 | None:intergenic | 45.0% |
! | ATCTGCTATTGCTGTTGCTG+AGG | - | chr1.1:17846372-17846391 | MS.gene026496:intron | 45.0% |
! | ATTTTGTGTGCAGGCATCAG+TGG | - | chr1.1:17844263-17844282 | MS.gene026496:intron | 45.0% |
! | CGCTAACGCCTTAAGGTTTT+GGG | - | chr1.1:17843692-17843711 | MS.gene026496:intron | 45.0% |
! | CTTGACTGACTCCTAGTTTC+AGG | - | chr1.1:17845594-17845613 | MS.gene026496:intron | 45.0% |
! | GAGGAAAAGGCAAGTATTGC+TGG | - | chr1.1:17846391-17846410 | MS.gene026496:intron | 45.0% |
!!! | TAACGCCTTAAGGTTTTGGG+TGG | - | chr1.1:17843695-17843714 | MS.gene026496:intron | 45.0% |
AACCACAGGACCAATGCACT+AGG | + | chr1.1:17843748-17843767 | None:intergenic | 50.0% | |
ACGTCTTAACCGGAGCTTCA+TGG | - | chr1.1:17846437-17846456 | MS.gene026496:intron | 50.0% | |
ATTCGACAGCCATGAAGCTC+CGG | + | chr1.1:17846449-17846468 | None:intergenic | 50.0% | |
CATTCACGGGTGAGTGATGT+GGG | + | chr1.1:17843629-17843648 | None:intergenic | 50.0% | |
GAAGGTTGAACAAGCTGAGG+TGG | - | chr1.1:17846522-17846541 | MS.gene026496:intron | 50.0% | |
GACCAATGCACTAGGACTAC+GGG | + | chr1.1:17843740-17843759 | None:intergenic | 50.0% | |
GCTCCACAGCTACACCAAAT+TGG | - | chr1.1:17844319-17844338 | MS.gene026496:intron | 50.0% | |
GGACCAATGCACTAGGACTA+CGG | + | chr1.1:17843741-17843760 | None:intergenic | 50.0% | |
GGAGAAGGTTGAACAAGCTG+AGG | - | chr1.1:17846519-17846538 | MS.gene026496:intron | 50.0% | |
GTTGGAGAGTCTAGAGGTCA+CGG | + | chr1.1:17843775-17843794 | None:intergenic | 50.0% | |
TTGGAGAGTCTAGAGGTCAC+GGG | + | chr1.1:17843774-17843793 | None:intergenic | 50.0% | |
! | TGTTGGGTTTCAAGTGTGGG+TGG | - | chr1.1:17843597-17843616 | MS.gene026496:intron | 50.0% |
! | TTTGGTGTAGCTGTGGAGCA+GGG | + | chr1.1:17844318-17844337 | None:intergenic | 50.0% |
!! | ACTTGAGGGAAGTGCTTCAG+GGG | + | chr1.1:17845351-17845370 | None:intergenic | 50.0% |
!! | ATTTGGTGTAGCTGTGGAGC+AGG | + | chr1.1:17844319-17844338 | None:intergenic | 50.0% |
!! | GACTTGAGGGAAGTGCTTCA+GGG | + | chr1.1:17845352-17845371 | None:intergenic | 50.0% |
!! | GGTCCAATTTGGTGTAGCTG+TGG | + | chr1.1:17844325-17844344 | None:intergenic | 50.0% |
ATGCACTAGGACTACGGGAG+AGG | + | chr1.1:17843735-17843754 | None:intergenic | 55.0% | |
CAGCACGATGACCATGGAGA+AGG | - | chr1.1:17846504-17846523 | MS.gene026496:intron | 55.0% | |
CCACATCACTCACCCGTGAA+TGG | - | chr1.1:17843627-17843646 | MS.gene026496:intron | 55.0% | |
CCATTCACGGGTGAGTGATG+TGG | + | chr1.1:17843630-17843649 | None:intergenic | 55.0% | |
CGTTGTTGCAAAGGCAGCTG+AGG | - | chr1.1:17846477-17846496 | MS.gene026496:intron | 55.0% | |
CTCCCGTAGTCCTAGTGCAT+TGG | - | chr1.1:17843735-17843754 | MS.gene026496:intron | 55.0% | |
GGATGTCAGCACGATGACCA+TGG | - | chr1.1:17846498-17846517 | MS.gene026496:intron | 55.0% | |
GTACTGCTCCACAGGTGAGA+TGG | + | chr1.1:17845321-17845340 | None:intergenic | 55.0% | |
TGCACTAGGACTACGGGAGA+GGG | + | chr1.1:17843734-17843753 | None:intergenic | 55.0% | |
TGTAGCTGTGGAGCAGGGAA+TGG | + | chr1.1:17844313-17844332 | None:intergenic | 55.0% | |
TGTGCCCTAGTGTCCTGTGT+TGG | - | chr1.1:17844781-17844800 | MS.gene026496:intron | 55.0% | |
! | GAAGTGCTTCAGGGGGAAGT+TGG | + | chr1.1:17845343-17845362 | None:intergenic | 55.0% |
! | GTCCTAGTGCATTGGTCCTG+TGG | - | chr1.1:17843743-17843762 | MS.gene026496:intron | 55.0% |
!! | CTTGAGGGAAGTGCTTCAGG+GGG | + | chr1.1:17845350-17845369 | None:intergenic | 55.0% |
!! | GGAAGTTGGTACTGCTCCAC+AGG | + | chr1.1:17845329-17845348 | None:intergenic | 55.0% |
!! | GGACTTGAGGGAAGTGCTTC+AGG | + | chr1.1:17845353-17845372 | None:intergenic | 55.0% |
GAGGTCACGGGAGAAACCAC+AGG | + | chr1.1:17843762-17843781 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 17842822 | 17846690 | 17842822 | ID=MS.gene026496 |
chr1.1 | mRNA | 17842822 | 17846690 | 17842822 | ID=MS.gene026496.t1;Parent=MS.gene026496 |
chr1.1 | exon | 17846685 | 17846690 | 17846685 | ID=MS.gene026496.t1.exon1;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17846685 | 17846690 | 17846685 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
chr1.1 | exon | 17845153 | 17845236 | 17845153 | ID=MS.gene026496.t1.exon2;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17845153 | 17845236 | 17845153 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
chr1.1 | exon | 17844513 | 17844571 | 17844513 | ID=MS.gene026496.t1.exon3;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17844513 | 17844571 | 17844513 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
chr1.1 | exon | 17844338 | 17844413 | 17844338 | ID=MS.gene026496.t1.exon4;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17844338 | 17844413 | 17844338 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
chr1.1 | exon | 17844139 | 17844222 | 17844139 | ID=MS.gene026496.t1.exon5;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17844139 | 17844222 | 17844139 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
chr1.1 | exon | 17842822 | 17843403 | 17842822 | ID=MS.gene026496.t1.exon6;Parent=MS.gene026496.t1 |
chr1.1 | CDS | 17842822 | 17843403 | 17842822 | ID=cds.MS.gene026496.t1;Parent=MS.gene026496.t1 |
Gene Sequence |
Protein sequence |