Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026607.t1 | XP_013466509.1 | 99.4 | 329 | 2 | 0 | 1 | 329 | 46 | 374 | 2.50E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026607.t1 | Q9ZU32 | 81.3 | 315 | 59 | 0 | 15 | 329 | 34 | 348 | 1.4e-144 | 513.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026607.t1 | A0A072VQY4 | 99.4 | 329 | 2 | 0 | 1 | 329 | 46 | 374 | 1.8e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011805 | MS.gene026607 | PPI |
| MS.gene99212 | MS.gene026607 | PPI |
| MS.gene026607 | MS.gene90508 | PPI |
| MS.gene041065 | MS.gene026607 | PPI |
| MS.gene56790 | MS.gene026607 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026607.t1 | MTR_1g030750 | 99.392 | 329 | 2 | 0 | 1 | 329 | 46 | 374 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026607.t1 | AT2G01350 | 81.270 | 315 | 59 | 0 | 15 | 329 | 34 | 348 | 0.0 | 542 |
| MS.gene026607.t1 | AT2G01350 | 81.270 | 315 | 59 | 0 | 15 | 329 | 13 | 327 | 0.0 | 542 |
| MS.gene026607.t1 | AT2G01350 | 80.317 | 315 | 56 | 1 | 15 | 329 | 34 | 342 | 0.0 | 527 |
| MS.gene026607.t1 | AT2G01350 | 82.206 | 281 | 50 | 0 | 49 | 329 | 1 | 281 | 3.87e-174 | 484 |
Find 72 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAACTGTAGTCCTTTA+TGG | 0.108217 | 1.1:+16358285 | None:intergenic |
| TCGAATAATGCTGGATAATA+TGG | 0.220541 | 1.1:-16356665 | MS.gene026607:CDS |
| TGAGGTTGATCCTTCTTTAA+AGG | 0.228429 | 1.1:-16358423 | MS.gene026607:intron |
| TTCCTTGTATAGGTATTAAT+TGG | 0.238723 | 1.1:-16357337 | MS.gene026607:intron |
| CTACAGTTTGGAAAAGTTAA+TGG | 0.303618 | 1.1:-16358275 | MS.gene026607:intron |
| GTGGAGTAACCTACATTTCT+AGG | 0.319411 | 1.1:-16355690 | MS.gene026607:intron |
| AAAAGCTGTTGACCTGTATC+TGG | 0.332775 | 1.1:-16357224 | MS.gene026607:CDS |
| GCAGAAGATGCTGGGGATCT+AGG | 0.339591 | 1.1:-16358737 | MS.gene026607:intron |
| AAGGAGGATGGCATCGTTGC+TGG | 0.343013 | 1.1:-16358473 | MS.gene026607:CDS |
| GGAAGTCGAAGCTTATTTCT+TGG | 0.356431 | 1.1:-16358498 | MS.gene026607:CDS |
| GTCCATAAAGGACTACAGTT+TGG | 0.357513 | 1.1:-16358287 | MS.gene026607:CDS |
| TGCTCCGTGTTTACGTTTGT+TGG | 0.360433 | 1.1:-16357464 | MS.gene026607:CDS |
| CCTCAAAATTGATACTGAAT+TGG | 0.380529 | 1.1:-16355356 | MS.gene026607:CDS |
| TCAACATCTCCGTTTGATAA+AGG | 0.380628 | 1.1:+16356637 | None:intergenic |
| ATAGATACAGTACATAAAAT+CGG | 0.383450 | 1.1:-16355718 | MS.gene026607:CDS |
| GCATCCTACTTATGATTTGA+AGG | 0.401374 | 1.1:-16358780 | MS.gene026607:CDS |
| CTTGCTCTTGCAGAAGATGC+TGG | 0.404352 | 1.1:-16358746 | MS.gene026607:CDS |
| TATTTGTGAATCCAGGCTTC+AGG | 0.405459 | 1.1:-16355751 | MS.gene026607:intron |
| TTCTTTAACTCGAATAATGC+TGG | 0.425179 | 1.1:-16356674 | MS.gene026607:CDS |
| GAAGCTGTGCGGTTGGTCAA+TGG | 0.438267 | 1.1:-16356598 | MS.gene026607:CDS |
| AAGCTGTGCGGTTGGTCAAT+GGG | 0.445964 | 1.1:-16356597 | MS.gene026607:CDS |
| AGCATCGCCTGCATATATAT+TGG | 0.446995 | 1.1:-16357500 | MS.gene026607:CDS |
| ACTGAATTGGCGCTTAAAGT+TGG | 0.451185 | 1.1:-16355343 | MS.gene026607:CDS |
| GTTTACGTTTGTTGGATAAG+TGG | 0.454989 | 1.1:-16357456 | MS.gene026607:CDS |
| TTGCTTCATACCTTTAAAGA+AGG | 0.458741 | 1.1:+16358413 | None:intergenic |
| GCTTCGACTTCCATGTCAAA+TGG | 0.464861 | 1.1:+16358509 | None:intergenic |
| AAAACTTTACCTAGAAATGT+AGG | 0.470300 | 1.1:+16355681 | None:intergenic |
| TTTACGTTTGTTGGATAAGT+GGG | 0.473302 | 1.1:-16357455 | MS.gene026607:CDS |
| CTAGTCTCCAATATATATGC+AGG | 0.474951 | 1.1:+16357493 | None:intergenic |
| CTACCTCAACCTCCAATTGA+AGG | 0.479255 | 1.1:+16357191 | None:intergenic |
| CTTGTATAGGTATTAATTGG+TGG | 0.481768 | 1.1:-16357334 | MS.gene026607:intron |
| TAGCCTTCAATTGGAGGTTG+AGG | 0.484455 | 1.1:-16357194 | MS.gene026607:intron |
| CATCCTACTTATGATTTGAA+GGG | 0.486121 | 1.1:-16358779 | MS.gene026607:CDS |
| TTGCTCTTGCAGAAGATGCT+GGG | 0.488745 | 1.1:-16358745 | MS.gene026607:CDS |
| GACTAGGACTCTTGAGGAAG+TGG | 0.488980 | 1.1:-16356731 | MS.gene026607:CDS |
| TGCAGAGATGATATTTAATG+AGG | 0.494921 | 1.1:-16358441 | MS.gene026607:CDS |
| TAACATTGTTGTAGCTGAAA+GGG | 0.499902 | 1.1:-16358129 | MS.gene026607:CDS |
| ATGGTTGTACCTTTATCAAA+CGG | 0.511127 | 1.1:-16356646 | MS.gene026607:CDS |
| GATAATCATATATCAACAGC+TGG | 0.512224 | 1.1:-16357265 | MS.gene026607:CDS |
| ATAACATTGTTGTAGCTGAA+AGG | 0.525165 | 1.1:-16358130 | MS.gene026607:CDS |
| AGCTTATTTCTTGGCGAAGG+AGG | 0.528001 | 1.1:-16358489 | MS.gene026607:CDS |
| AATTGGCGCTTAAAGTTGGA+AGG | 0.528440 | 1.1:-16355339 | MS.gene026607:CDS |
| TAGATACAGTACATAAAATC+GGG | 0.531386 | 1.1:-16355717 | MS.gene026607:CDS |
| CTTTGAAATGTCAGGTGGAG+TGG | 0.531927 | 1.1:-16358331 | MS.gene026607:intron |
| TATAGGTGATATAACATGCT+TGG | 0.532134 | 1.1:-16358540 | MS.gene026607:intron |
| TGGAGGACGAAATCATAGAA+TGG | 0.532624 | 1.1:-16357314 | MS.gene026607:CDS |
| CTTAAAGTTGGAAGGCGCAC+AGG | 0.532731 | 1.1:-16355331 | MS.gene026607:CDS |
| TATTTCTTGGCGAAGGAGGA+TGG | 0.532732 | 1.1:-16358485 | MS.gene026607:CDS |
| GGAGGACGAAATCATAGAAT+GGG | 0.538882 | 1.1:-16357313 | MS.gene026607:CDS |
| CGAAGCTTATTTCTTGGCGA+AGG | 0.552796 | 1.1:-16358492 | MS.gene026607:CDS |
| AACTTTATGCAGAGGATGAG+TGG | 0.553734 | 1.1:-16358098 | MS.gene026607:CDS |
| ATGCCCTTCAAATCATAAGT+AGG | 0.554178 | 1.1:+16358776 | None:intergenic |
| TAGAATGGGTTTGTTTGACA+TGG | 0.558081 | 1.1:-16357299 | MS.gene026607:CDS |
| GACTTCCATGTCAAATGGAA+TGG | 0.559575 | 1.1:+16358514 | None:intergenic |
| AAATCATAAGTAGGATGCAA+AGG | 0.574927 | 1.1:+16358785 | None:intergenic |
| GTATAGGTATTAATTGGTGG+AGG | 0.583098 | 1.1:-16357331 | MS.gene026607:intron |
| TGCTCTTGCAGAAGATGCTG+GGG | 0.583554 | 1.1:-16358744 | MS.gene026607:CDS |
| TGGCATTGCAACTTTAACCA+AGG | 0.597429 | 1.1:-16358078 | MS.gene026607:intron |
| GGCCACCATTCCATTTGACA+TGG | 0.598004 | 1.1:-16358519 | MS.gene026607:CDS |
| CAAAGGAGGCTTTACTGCGA+AGG | 0.603116 | 1.1:+16358802 | None:intergenic |
| TTCCATGTCAAATGGAATGG+TGG | 0.606981 | 1.1:+16358517 | None:intergenic |
| GCTGAAAGAAGCTGTGCGGT+TGG | 0.613125 | 1.1:-16356605 | MS.gene026607:CDS |
| CAATGGGAGATTTGAAACTG+AGG | 0.629104 | 1.1:-16356581 | MS.gene026607:intron |
| GGTTGAGACTAGGACTCTTG+AGG | 0.629180 | 1.1:-16356737 | MS.gene026607:CDS |
| TAGTGCTAAACTTTATGCAG+AGG | 0.631286 | 1.1:-16358106 | MS.gene026607:CDS |
| GTACATAAAATCGGGCAAAG+TGG | 0.642028 | 1.1:-16355709 | MS.gene026607:CDS |
| AAGGACTCGTATGAGATCGT+CGG | 0.643661 | 1.1:+16358821 | None:intergenic |
| TCATAAGTAGGATGCAAAGG+AGG | 0.644964 | 1.1:+16358788 | None:intergenic |
| ACGTTTGTTGGATAAGTGGG+CGG | 0.647258 | 1.1:-16357452 | MS.gene026607:intron |
| TTATCCAACAAACGTAAACA+CGG | 0.659218 | 1.1:+16357460 | None:intergenic |
| AATCATATATCAACAGCTGG+AGG | 0.664583 | 1.1:-16357262 | MS.gene026607:CDS |
| CTATGCTGAAAGAAGCTGTG+CGG | 0.758489 | 1.1:-16356609 | MS.gene026607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATAAAATAAAAA+TGG | + | chr1.1:16357084-16357103 | None:intergenic | 0.0% |
| !! | TATAAAAAAATATAAATAAA+TGG | + | chr1.1:16356778-16356797 | None:intergenic | 0.0% |
| !! | AAAATTATTCATTAAGAATC+AGG | + | chr1.1:16357038-16357057 | None:intergenic | 15.0% |
| !! | AAATTATTCATTAAGAATCA+GGG | + | chr1.1:16357037-16357056 | None:intergenic | 15.0% |
| !! | ATATAATAATGAACAAATCA+CGG | - | chr1.1:16356482-16356501 | MS.gene026607:intron | 15.0% |
| !! | TAATATTATAAACCATATGT+TGG | - | chr1.1:16358635-16358654 | MS.gene026607:intron | 15.0% |
| !! | TATTGATAAAAAAATAAGTG+AGG | + | chr1.1:16356465-16356484 | None:intergenic | 15.0% |
| !! | TGATAAATATAAGATAACAA+TGG | + | chr1.1:16356602-16356621 | None:intergenic | 15.0% |
| !! | TTAAGAAAATAAAAATACCT+TGG | + | chr1.1:16356108-16356127 | None:intergenic | 15.0% |
| !!! | AAAATAGAAATTTTTTGTGA+AGG | - | chr1.1:16358132-16358151 | MS.gene026607:CDS | 15.0% |
| !!! | GTTTTTAATTGATTTATGAA+AGG | - | chr1.1:16355973-16355992 | MS.gene026607:intron | 15.0% |
| !!! | TATGTAATCGTTTTTTTATT+TGG | - | chr1.1:16358295-16358314 | MS.gene026607:CDS | 15.0% |
| !!! | TTATTTTGATATCTTCAATT+TGG | - | chr1.1:16358331-16358350 | MS.gene026607:intron | 15.0% |
| !! | ATAGATACAGTACATAAAAT+CGG | - | chr1.1:16358448-16358467 | MS.gene026607:CDS | 20.0% |
| !! | ATATTGTATGATGTTTGTAA+AGG | - | chr1.1:16356154-16356173 | MS.gene026607:intron | 20.0% |
| !! | ATGTATAAAAATGAAAGGAA+TGG | + | chr1.1:16356753-16356772 | None:intergenic | 20.0% |
| !! | ATTGAATTGAAATGGTTAAA+AGG | - | chr1.1:16356232-16356251 | MS.gene026607:intron | 20.0% |
| !! | TAACCACAAATATTATGATA+GGG | + | chr1.1:16355789-16355808 | None:intergenic | 20.0% |
| !! | TTAACCACAAATATTATGAT+AGG | + | chr1.1:16355790-16355809 | None:intergenic | 20.0% |
| !! | TTGTTGTGAAATCTATTAAA+GGG | + | chr1.1:16357107-16357126 | None:intergenic | 20.0% |
| !!! | ATAAGAAATGTTTTGACTAT+AGG | - | chr1.1:16355609-16355628 | MS.gene026607:intron | 20.0% |
| !!! | ATAAGTGTTTTTATTGAAAC+TGG | + | chr1.1:16358195-16358214 | None:intergenic | 20.0% |
| !!! | CAATTATATAAAGCTTTGTT+AGG | + | chr1.1:16357228-16357247 | None:intergenic | 20.0% |
| !!! | CTAACAAAGCTTTATATAAT+TGG | - | chr1.1:16357226-16357245 | MS.gene026607:CDS | 20.0% |
| ! | AAAACTTTACCTAGAAATGT+AGG | + | chr1.1:16358488-16358507 | None:intergenic | 25.0% |
| ! | AAAATTTCATTGCTCTGATA+TGG | - | chr1.1:16358737-16358756 | MS.gene026607:intron | 25.0% |
| ! | AAAGAAGGAAAAGTTAGTTA+GGG | - | chr1.1:16358036-16358055 | MS.gene026607:intron | 25.0% |
| ! | AAATTTCATTGCTCTGATAT+GGG | - | chr1.1:16358738-16358757 | MS.gene026607:CDS | 25.0% |
| ! | AACGATTCACAGTTAATTAT+TGG | - | chr1.1:16356196-16356215 | MS.gene026607:intron | 25.0% |
| ! | AACTTAATTACGAAAGCAAA+TGG | - | chr1.1:16355933-16355952 | MS.gene026607:intron | 25.0% |
| ! | AATAGACAGAAACAAAAACA+TGG | + | chr1.1:16357777-16357796 | None:intergenic | 25.0% |
| ! | AATTCAGATTGAGTAAAAGA+TGG | - | chr1.1:16356536-16356555 | MS.gene026607:intron | 25.0% |
| ! | AATTCTTGACTTAATCATTG+AGG | - | chr1.1:16355808-16355827 | MS.gene026607:intron | 25.0% |
| ! | ACAATACATGTAGAAATTGA+AGG | + | chr1.1:16358558-16358577 | None:intergenic | 25.0% |
| ! | ATACCCTATCATAATATTTG+TGG | - | chr1.1:16355783-16355802 | MS.gene026607:intron | 25.0% |
| ! | GTTGTTGTGAAATCTATTAA+AGG | + | chr1.1:16357108-16357127 | None:intergenic | 25.0% |
| ! | TAGAAATAAAAACAGTGTGT+TGG | + | chr1.1:16357754-16357773 | None:intergenic | 25.0% |
| ! | TAGATACAGTACATAAAATC+GGG | - | chr1.1:16358449-16358468 | MS.gene026607:CDS | 25.0% |
| ! | TGGTCATGTATAAAAATGAA+AGG | + | chr1.1:16356758-16356777 | None:intergenic | 25.0% |
| ! | TTAAAATGCCATTAAATGGA+CGG | + | chr1.1:16357274-16357293 | None:intergenic | 25.0% |
| ! | TTAACCTGTATCGTATTATT+CGG | - | chr1.1:16357631-16357650 | MS.gene026607:intron | 25.0% |
| ! | TTCCTTGTATAGGTATTAAT+TGG | - | chr1.1:16356829-16356848 | MS.gene026607:intron | 25.0% |
| ! | TTTATTGAAACTGGAGAAAA+TGG | + | chr1.1:16358186-16358205 | None:intergenic | 25.0% |
| !! | CAATTCAGTATCAATTTTGA+GGG | + | chr1.1:16358812-16358831 | None:intergenic | 25.0% |
| !! | TCCATTTAATGGCATTTTAA+TGG | - | chr1.1:16357274-16357293 | MS.gene026607:CDS | 25.0% |
| !! | TTTATCCTAAGAGAAGTTTT+AGG | - | chr1.1:16356370-16356389 | MS.gene026607:intron | 25.0% |
| !!! | ACAGTTAATTATTGGTAATG+TGG | - | chr1.1:16356204-16356223 | MS.gene026607:intron | 25.0% |
| !!! | AGTTAATTATTGGTAATGTG+GGG | - | chr1.1:16356206-16356225 | MS.gene026607:intron | 25.0% |
| !!! | CAGTTAATTATTGGTAATGT+GGG | - | chr1.1:16356205-16356224 | MS.gene026607:intron | 25.0% |
| !!! | TATTGTTGATTTCCTTGTAT+AGG | - | chr1.1:16356819-16356838 | MS.gene026607:intron | 25.0% |
| AAATCATAAGTAGGATGCAA+AGG | + | chr1.1:16355384-16355403 | None:intergenic | 30.0% | |
| AACTTCTCTTAGGATAAATG+TGG | + | chr1.1:16356368-16356387 | None:intergenic | 30.0% | |
| AGGTAATTCAAGGTTAAGAT+GGG | + | chr1.1:16357185-16357204 | None:intergenic | 30.0% | |
| AGTAAGAGAGGATTATTAAG+AGG | - | chr1.1:16358069-16358088 | MS.gene026607:intron | 30.0% | |
| ATAACATTGTTGTAGCTGAA+AGG | - | chr1.1:16356036-16356055 | MS.gene026607:intron | 30.0% | |
| ATCTTCAGTTATTCATGTGT+AGG | - | chr1.1:16356005-16356024 | MS.gene026607:intron | 30.0% | |
| ATGGTTGTACCTTTATCAAA+CGG | - | chr1.1:16357520-16357539 | MS.gene026607:intron | 30.0% | |
| CACCAATTAATACCTATACA+AGG | + | chr1.1:16356834-16356853 | None:intergenic | 30.0% | |
| CACTAATCTGACAAATTGTT+AGG | + | chr1.1:16356430-16356449 | None:intergenic | 30.0% | |
| CATCCTACTTATGATTTGAA+GGG | - | chr1.1:16355387-16355406 | MS.gene026607:CDS | 30.0% | |
| CATGAAACTAGAAGAAAGTT+TGG | + | chr1.1:16355462-16355481 | None:intergenic | 30.0% | |
| CATTACAGCAGTATATTTCA+CGG | + | chr1.1:16357973-16357992 | None:intergenic | 30.0% | |
| CCTCAAAATTGATACTGAAT+TGG | - | chr1.1:16358810-16358829 | MS.gene026607:CDS | 30.0% | |
| CCTGTGAAAAAACATGATAT+AGG | + | chr1.1:16356633-16356652 | None:intergenic | 30.0% | |
| CTACAGTTTGGAAAAGTTAA+TGG | - | chr1.1:16355891-16355910 | MS.gene026607:intron | 30.0% | |
| CTTGTATAGGTATTAATTGG+TGG | - | chr1.1:16356832-16356851 | MS.gene026607:intron | 30.0% | |
| GAAAGAAGGAAAAGTTAGTT+AGG | - | chr1.1:16358035-16358054 | MS.gene026607:intron | 30.0% | |
| GAATTGAAATGGTTAAAAGG+AGG | - | chr1.1:16356235-16356254 | MS.gene026607:intron | 30.0% | |
| GATAATCATATATCAACAGC+TGG | - | chr1.1:16356901-16356920 | MS.gene026607:intron | 30.0% | |
| GCCATTAAAATGCCATTAAA+TGG | + | chr1.1:16357278-16357297 | None:intergenic | 30.0% | |
| GTAAGAGAGGATTATTAAGA+GGG | - | chr1.1:16358070-16358089 | MS.gene026607:intron | 30.0% | |
| GTTAAATGCATTTGTAGATC+TGG | - | chr1.1:16357325-16357344 | MS.gene026607:CDS | 30.0% | |
| TAAAACAGTGACTAAAGCAA+AGG | + | chr1.1:16358678-16358697 | None:intergenic | 30.0% | |
| TAACATTGTTGTAGCTGAAA+GGG | - | chr1.1:16356037-16356056 | MS.gene026607:intron | 30.0% | |
| TAAGAAACAAACAAGTCCAA+AGG | + | chr1.1:16358272-16358291 | None:intergenic | 30.0% | |
| TAAGAGAGGATTATTAAGAG+GGG | - | chr1.1:16358071-16358090 | MS.gene026607:intron | 30.0% | |
| TATAGGTGATATAACATGCT+TGG | - | chr1.1:16355626-16355645 | MS.gene026607:intron | 30.0% | |
| TCGAATAATGCTGGATAATA+TGG | - | chr1.1:16357501-16357520 | MS.gene026607:CDS | 30.0% | |
| TGATATCTTCAATTTGGTTG+AGG | - | chr1.1:16358337-16358356 | MS.gene026607:intron | 30.0% | |
| TGCAGAGATGATATTTAATG+AGG | - | chr1.1:16355725-16355744 | MS.gene026607:CDS | 30.0% | |
| TGGGGAATATTGAATTGAAA+TGG | - | chr1.1:16356224-16356243 | MS.gene026607:intron | 30.0% | |
| TGGTGATTTCAGAAATCATT+AGG | + | chr1.1:16356582-16356601 | None:intergenic | 30.0% | |
| TGTTTGTAAAGGTTCTTGTA+AGG | - | chr1.1:16356165-16356184 | MS.gene026607:intron | 30.0% | |
| TTATCCAACAAACGTAAACA+CGG | + | chr1.1:16356709-16356728 | None:intergenic | 30.0% | |
| TTCTTTAACTCGAATAATGC+TGG | - | chr1.1:16357492-16357511 | MS.gene026607:CDS | 30.0% | |
| TTTCTCCTAAAACTTCTCTT+AGG | + | chr1.1:16356378-16356397 | None:intergenic | 30.0% | |
| TTTGTCATATTTGTGAATCC+AGG | - | chr1.1:16358408-16358427 | MS.gene026607:intron | 30.0% | |
| ! | CAGAGCAATGAAATTTTGTA+GGG | + | chr1.1:16358734-16358753 | None:intergenic | 30.0% |
| ! | CCAATTCAGTATCAATTTTG+AGG | + | chr1.1:16358813-16358832 | None:intergenic | 30.0% |
| ! | GTGAATTTGATAGTTTCTGT+TGG | - | chr1.1:16358109-16358128 | MS.gene026607:CDS | 30.0% |
| ! | TCAGAGCAATGAAATTTTGT+AGG | + | chr1.1:16358735-16358754 | None:intergenic | 30.0% |
| ! | TTGCTTCATACCTTTAAAGA+AGG | + | chr1.1:16355756-16355775 | None:intergenic | 30.0% |
| ! | TTTACGTTTGTTGGATAAGT+GGG | - | chr1.1:16356711-16356730 | MS.gene026607:CDS | 30.0% |
| ! | TTTTGTGAAGGAGAAATTCT+CGG | - | chr1.1:16358144-16358163 | MS.gene026607:intron | 30.0% |
| !! | GTTTTTAGAAACTCACAAAC+CGG | - | chr1.1:16358700-16358719 | MS.gene026607:intron | 30.0% |
| !! | TTTTAACTACCCTACAGATA+TGG | + | chr1.1:16357154-16357173 | None:intergenic | 30.0% |
| !!! | CCTATATCATGTTTTTTCAC+AGG | - | chr1.1:16356630-16356649 | MS.gene026607:CDS | 30.0% |
| AAAAGTTAGTTAGGGTCAGT+TGG | - | chr1.1:16358044-16358063 | MS.gene026607:intron | 35.0% | |
| AAAATGGCTGCAATATAGAG+AGG | + | chr1.1:16357068-16357087 | None:intergenic | 35.0% | |
| AAATGGCTGCAATATAGAGA+GGG | + | chr1.1:16357067-16357086 | None:intergenic | 35.0% | |
| AAGACCGAATAATACGATAC+AGG | + | chr1.1:16357638-16357657 | None:intergenic | 35.0% | |
| AAGCAAAGGAAGAATCAAAG+TGG | + | chr1.1:16358664-16358683 | None:intergenic | 35.0% | |
| AATCATATATCAACAGCTGG+AGG | - | chr1.1:16356904-16356923 | MS.gene026607:intron | 35.0% | |
| AATTTGACACGACCGTTATT+GGG | - | chr1.1:16358008-16358027 | MS.gene026607:intron | 35.0% | |
| AGCAAAGATGAGGTAATTCA+AGG | + | chr1.1:16357195-16357214 | None:intergenic | 35.0% | |
| AGTTAGTTAAGAACGTGAAG+AGG | + | chr1.1:16358383-16358402 | None:intergenic | 35.0% | |
| ATGAGTTTACACTCCAAATG+TGG | - | chr1.1:16357884-16357903 | MS.gene026607:intron | 35.0% | |
| ATGCCCTTCAAATCATAAGT+AGG | + | chr1.1:16355393-16355412 | None:intergenic | 35.0% | |
| CGTGAAATATACTGCTGTAA+TGG | - | chr1.1:16357971-16357990 | MS.gene026607:intron | 35.0% | |
| CTAGTCTCCAATATATATGC+AGG | + | chr1.1:16356676-16356695 | None:intergenic | 35.0% | |
| CTTCTTTCTTACCCCAATAA+CGG | + | chr1.1:16358023-16358042 | None:intergenic | 35.0% | |
| GAAAAATAGCCTTCAATTGG+AGG | - | chr1.1:16356966-16356985 | MS.gene026607:intron | 35.0% | |
| GAGGTAATTCAAGGTTAAGA+TGG | + | chr1.1:16357186-16357205 | None:intergenic | 35.0% | |
| GCATCCTACTTATGATTTGA+AGG | - | chr1.1:16355386-16355405 | MS.gene026607:CDS | 35.0% | |
| GCTATGCATCTTAAAGTGAT+TGG | - | chr1.1:16357296-16357315 | MS.gene026607:CDS | 35.0% | |
| GGAGAAAAATAGCCTTCAAT+TGG | - | chr1.1:16356963-16356982 | MS.gene026607:intron | 35.0% | |
| GTATAGGTATTAATTGGTGG+AGG | - | chr1.1:16356835-16356854 | MS.gene026607:intron | 35.0% | |
| TAGATCTGGTGTTCATGATA+TGG | - | chr1.1:16357339-16357358 | MS.gene026607:intron | 35.0% | |
| TAGTGCTAAACTTTATGCAG+AGG | - | chr1.1:16356060-16356079 | MS.gene026607:intron | 35.0% | |
| TCAACATCTCCGTTTGATAA+AGG | + | chr1.1:16357532-16357551 | None:intergenic | 35.0% | |
| TCAGTTATTCATGTGTAGGA+CGG | - | chr1.1:16356009-16356028 | MS.gene026607:intron | 35.0% | |
| TCTTAGAAAGAATGCGTGAA+AGG | + | chr1.1:16357014-16357033 | None:intergenic | 35.0% | |
| TCTTTATTGAAGAGTAGCCT+CGG | + | chr1.1:16356318-16356337 | None:intergenic | 35.0% | |
| TGGTTGTGTTATGTTTCATC+AGG | - | chr1.1:16356556-16356575 | MS.gene026607:intron | 35.0% | |
| TTCCAAACTGTAGTCCTTTA+TGG | + | chr1.1:16355884-16355903 | None:intergenic | 35.0% | |
| TTTGTGAAGGAGAAATTCTC+GGG | - | chr1.1:16358145-16358164 | MS.gene026607:intron | 35.0% | |
| ! | ATACAGGTCAACAGCTTTTA+GGG | + | chr1.1:16356941-16356960 | None:intergenic | 35.0% |
| ! | ATTTTGTAGGGAAACAGTAC+CGG | + | chr1.1:16358722-16358741 | None:intergenic | 35.0% |
| ! | CTAGATTTTATGAAGTGCAG+TGG | + | chr1.1:16358515-16358534 | None:intergenic | 35.0% |
| ! | GATGGAGATTTTGTCCATAA+AGG | - | chr1.1:16355867-16355886 | MS.gene026607:intron | 35.0% |
| ! | GTTTACGTTTGTTGGATAAG+TGG | - | chr1.1:16356710-16356729 | MS.gene026607:CDS | 35.0% |
| ! | TAGAATGGGTTTGTTTGACA+TGG | - | chr1.1:16356867-16356886 | MS.gene026607:intron | 35.0% |
| ! | TCAAAGTGGATTCCAACATA+TGG | + | chr1.1:16358650-16358669 | None:intergenic | 35.0% |
| ! | TGAGGTTGATCCTTCTTTAA+AGG | - | chr1.1:16355743-16355762 | MS.gene026607:intron | 35.0% |
| ! | TGTCAAATTGATGACAACCA+AGG | + | chr1.1:16357997-16358016 | None:intergenic | 35.0% |
| !! | AAAGCTTTGTTAGGCAGTTA+AGG | + | chr1.1:16357219-16357238 | None:intergenic | 35.0% |
| !! | AAGCTTTAAGAAATGGACAG+TGG | + | chr1.1:16358238-16358257 | None:intergenic | 35.0% |
| !! | AGAGAGGAAGCTTTAAGAAA+TGG | + | chr1.1:16358245-16358264 | None:intergenic | 35.0% |
| !! | GAGGATTACTTTGAAATGTC+AGG | - | chr1.1:16355827-16355846 | MS.gene026607:intron | 35.0% |
| !! | GATTACTTTGAAATGTCAGG+TGG | - | chr1.1:16355830-16355849 | MS.gene026607:intron | 35.0% |
| !!! | TCATGTTTTTTCACAGGCAA+TGG | - | chr1.1:16356636-16356655 | MS.gene026607:CDS | 35.0% |
| AAAAGCTGTTGACCTGTATC+TGG | - | chr1.1:16356942-16356961 | MS.gene026607:intron | 40.0% | |
| AACTTTATGCAGAGGATGAG+TGG | - | chr1.1:16356068-16356087 | MS.gene026607:intron | 40.0% | |
| AATGTTGACCTCAAGACATG+CGG | + | chr1.1:16357911-16357930 | None:intergenic | 40.0% | |
| AATTGGCGCTTAAAGTTGGA+AGG | - | chr1.1:16358827-16358846 | MS.gene026607:CDS | 40.0% | |
| ACTGAATTGGCGCTTAAAGT+TGG | - | chr1.1:16358823-16358842 | MS.gene026607:CDS | 40.0% | |
| AGCATCGCCTGCATATATAT+TGG | - | chr1.1:16356666-16356685 | MS.gene026607:CDS | 40.0% | |
| ATATACTGCTGTAATGGCCT+TGG | - | chr1.1:16357977-16357996 | MS.gene026607:intron | 40.0% | |
| ATCTGGTGTTCATGATATGG+CGG | - | chr1.1:16357342-16357361 | MS.gene026607:intron | 40.0% | |
| ATGTCTGTCCGTCCATTTAA+TGG | - | chr1.1:16357263-16357282 | MS.gene026607:CDS | 40.0% | |
| ATTTGACACGACCGTTATTG+GGG | - | chr1.1:16358009-16358028 | MS.gene026607:intron | 40.0% | |
| CAAGTCCAAAGGAAAAAGAG+AGG | + | chr1.1:16358261-16358280 | None:intergenic | 40.0% | |
| CAATTTGACACGACCGTTAT+TGG | - | chr1.1:16358007-16358026 | MS.gene026607:intron | 40.0% | |
| CAGTTAAGGAAGCAAAGATG+AGG | + | chr1.1:16357205-16357224 | None:intergenic | 40.0% | |
| CAGTTATTCATGTGTAGGAC+GGG | - | chr1.1:16356010-16356029 | MS.gene026607:intron | 40.0% | |
| CGTTATTGGGGTAAGAAAGA+AGG | - | chr1.1:16358021-16358040 | MS.gene026607:intron | 40.0% | |
| GAACTAGTTGTTTACCAGCA+TGG | + | chr1.1:16357369-16357388 | None:intergenic | 40.0% | |
| GACTTCCATGTCAAATGGAA+TGG | + | chr1.1:16355655-16355674 | None:intergenic | 40.0% | |
| GCACAACTGGATCAGATAAA+AGG | + | chr1.1:16356346-16356365 | None:intergenic | 40.0% | |
| GGAGGACGAAATCATAGAAT+GGG | - | chr1.1:16356853-16356872 | MS.gene026607:intron | 40.0% | |
| GGATTATTAAGAGGGGATGT+AGG | - | chr1.1:16358078-16358097 | MS.gene026607:intron | 40.0% | |
| GTACATAAAATCGGGCAAAG+TGG | - | chr1.1:16358457-16358476 | MS.gene026607:CDS | 40.0% | |
| GTCCATAAAGGACTACAGTT+TGG | - | chr1.1:16355879-16355898 | MS.gene026607:intron | 40.0% | |
| GTGGAGTAACCTACATTTCT+AGG | - | chr1.1:16358476-16358495 | MS.gene026607:CDS | 40.0% | |
| GTGGAGTGGTCTAAAAATGA+TGG | - | chr1.1:16355849-16355868 | MS.gene026607:intron | 40.0% | |
| TAGGATAAATGTGGCACAAC+TGG | + | chr1.1:16356359-16356378 | None:intergenic | 40.0% | |
| TATTTGTGAATCCAGGCTTC+AGG | - | chr1.1:16358415-16358434 | MS.gene026607:intron | 40.0% | |
| TCATAAGTAGGATGCAAAGG+AGG | + | chr1.1:16355381-16355400 | None:intergenic | 40.0% | |
| TCCTACTTGCCATATCTGTA+GGG | - | chr1.1:16357142-16357161 | MS.gene026607:intron | 40.0% | |
| TGCTGGTAAACAACTAGTTC+TGG | - | chr1.1:16357369-16357388 | MS.gene026607:intron | 40.0% | |
| TGGAGGACGAAATCATAGAA+TGG | - | chr1.1:16356852-16356871 | MS.gene026607:intron | 40.0% | |
| TGGCATTGCAACTTTAACCA+AGG | - | chr1.1:16356088-16356107 | MS.gene026607:intron | 40.0% | |
| TTCCATGTCAAATGGAATGG+TGG | + | chr1.1:16355652-16355671 | None:intergenic | 40.0% | |
| TTGTGAAGGAGAAATTCTCG+GGG | - | chr1.1:16358146-16358165 | MS.gene026607:intron | 40.0% | |
| ! | AGCTTCCTCTCTTTTTCCTT+TGG | - | chr1.1:16358253-16358272 | MS.gene026607:intron | 40.0% |
| ! | CAATGGGAGATTTGAAACTG+AGG | - | chr1.1:16357585-16357604 | MS.gene026607:intron | 40.0% |
| ! | GAAACTGAGGTATTCATGAC+TGG | - | chr1.1:16357598-16357617 | MS.gene026607:intron | 40.0% |
| ! | GATACAGGTCAACAGCTTTT+AGG | + | chr1.1:16356942-16356961 | None:intergenic | 40.0% |
| ! | GGAAGTCGAAGCTTATTTCT+TGG | - | chr1.1:16355668-16355687 | MS.gene026607:intron | 40.0% |
| ! | GTAAGTTTGTGTTTTTCCCC+AGG | - | chr1.1:16357408-16357427 | MS.gene026607:intron | 40.0% |
| ! | GTTCTGTTTCTCTTGGATAC+TGG | - | chr1.1:16356292-16356311 | MS.gene026607:intron | 40.0% |
| !! | ACATCTGGTTCTGTTTCTCT+TGG | - | chr1.1:16356285-16356304 | MS.gene026607:intron | 40.0% |
| !!! | GGCTATTTTTCTCCAGATAC+AGG | + | chr1.1:16356957-16356976 | None:intergenic | 40.0% |
| AAGAGTCCTAGTCTCAACCT+GGG | + | chr1.1:16357428-16357447 | None:intergenic | 45.0% | |
| AAGGACTCGTATGAGATCGT+CGG | + | chr1.1:16355348-16355367 | None:intergenic | 45.0% | |
| AATGCAGCATTCCTGACATC+TGG | - | chr1.1:16356270-16356289 | MS.gene026607:intron | 45.0% | |
| ACAGATATGGCAAGTAGGAG+TGG | + | chr1.1:16357141-16357160 | None:intergenic | 45.0% | |
| ACCCTACAGATATGGCAAGT+AGG | + | chr1.1:16357146-16357165 | None:intergenic | 45.0% | |
| ATGTCAGGAATGCTGCATTG+AGG | + | chr1.1:16356269-16356288 | None:intergenic | 45.0% | |
| ATGTTGACCTCAAGACATGC+GGG | + | chr1.1:16357910-16357929 | None:intergenic | 45.0% | |
| CTACCTCAACCTCCAATTGA+AGG | + | chr1.1:16356978-16356997 | None:intergenic | 45.0% | |
| CTATGCTGAAAGAAGCTGTG+CGG | - | chr1.1:16357557-16357576 | MS.gene026607:intron | 45.0% | |
| CTCCTACTTGCCATATCTGT+AGG | - | chr1.1:16357141-16357160 | MS.gene026607:intron | 45.0% | |
| GAGAAACAGAACCAGATGTC+AGG | + | chr1.1:16356284-16356303 | None:intergenic | 45.0% | |
| GCTTCGACTTCCATGTCAAA+TGG | + | chr1.1:16355660-16355679 | None:intergenic | 45.0% | |
| GGTCAGTTGGTTAGTAAGAG+AGG | - | chr1.1:16358057-16358076 | MS.gene026607:intron | 45.0% | |
| TAGCCTTCAATTGGAGGTTG+AGG | - | chr1.1:16356972-16356991 | MS.gene026607:intron | 45.0% | |
| TAGTAACATTGCCTGAAGCC+TGG | + | chr1.1:16358429-16358448 | None:intergenic | 45.0% | |
| TATTTCTTGGCGAAGGAGGA+TGG | - | chr1.1:16355681-16355700 | MS.gene026607:intron | 45.0% | |
| TGCTCCGTGTTTACGTTTGT+TGG | - | chr1.1:16356702-16356721 | MS.gene026607:CDS | 45.0% | |
| TTGCTCTTGCAGAAGATGCT+GGG | - | chr1.1:16355421-16355440 | MS.gene026607:intron | 45.0% | |
| ! | ACGTTTGTTGGATAAGTGGG+CGG | - | chr1.1:16356714-16356733 | MS.gene026607:CDS | 45.0% |
| ! | AGCTTATTTCTTGGCGAAGG+AGG | - | chr1.1:16355677-16355696 | MS.gene026607:intron | 45.0% |
| ! | CGAAGCTTATTTCTTGGCGA+AGG | - | chr1.1:16355674-16355693 | MS.gene026607:intron | 45.0% |
| ! | CTGATATGGGTTTTCTGCAG+TGG | - | chr1.1:16358751-16358770 | MS.gene026607:CDS | 45.0% |
| !! | CTTTGAAATGTCAGGTGGAG+TGG | - | chr1.1:16355835-16355854 | MS.gene026607:intron | 45.0% |
| !! | TTTTTCCCCAGGTTGAGACT+AGG | - | chr1.1:16357419-16357438 | MS.gene026607:intron | 45.0% |
| AGAGTCCTAGTCTCAACCTG+GGG | + | chr1.1:16357427-16357446 | None:intergenic | 50.0% | |
| CAAAGGAGGCTTTACTGCGA+AGG | + | chr1.1:16355367-16355386 | None:intergenic | 50.0% | |
| CAAGAGTCCTAGTCTCAACC+TGG | + | chr1.1:16357429-16357448 | None:intergenic | 50.0% | |
| CTTGCTCTTGCAGAAGATGC+TGG | - | chr1.1:16355420-16355439 | MS.gene026607:intron | 50.0% | |
| GACTAGGACTCTTGAGGAAG+TGG | - | chr1.1:16357435-16357454 | MS.gene026607:intron | 50.0% | |
| GATATGGCAAGTAGGAGTGG+AGG | + | chr1.1:16357138-16357157 | None:intergenic | 50.0% | |
| GGCCACCATTCCATTTGACA+TGG | - | chr1.1:16355647-16355666 | MS.gene026607:intron | 50.0% | |
| GGTTGAGACTAGGACTCTTG+AGG | - | chr1.1:16357429-16357448 | MS.gene026607:intron | 50.0% | |
| TGCTCTTGCAGAAGATGCTG+GGG | - | chr1.1:16355422-16355441 | MS.gene026607:intron | 50.0% | |
| TTTCTCTTGGATACTGGCCG+AGG | - | chr1.1:16356298-16356317 | MS.gene026607:intron | 50.0% | |
| ! | AAGCTGTGCGGTTGGTCAAT+GGG | - | chr1.1:16357569-16357588 | MS.gene026607:intron | 50.0% |
| ! | CTTAAAGTTGGAAGGCGCAC+AGG | - | chr1.1:16358835-16358854 | MS.gene026607:CDS | 50.0% |
| AAGGAGGATGGCATCGTTGC+TGG | - | chr1.1:16355693-16355712 | MS.gene026607:CDS | 55.0% | |
| AATGTGGCCCGCATGTCTTG+AGG | - | chr1.1:16357900-16357919 | MS.gene026607:intron | 55.0% | |
| ATGGCAAGTAGGAGTGGAGG+AGG | + | chr1.1:16357135-16357154 | None:intergenic | 55.0% | |
| CAAGACATGCGGGCCACATT+TGG | + | chr1.1:16357900-16357919 | None:intergenic | 55.0% | |
| CATGATATGGCGGTCCATGC+TGG | - | chr1.1:16357352-16357371 | MS.gene026607:intron | 55.0% | |
| GCAGAAGATGCTGGGGATCT+AGG | - | chr1.1:16355429-16355448 | MS.gene026607:intron | 55.0% | |
| GCTGAAAGAAGCTGTGCGGT+TGG | - | chr1.1:16357561-16357580 | MS.gene026607:intron | 55.0% | |
| TGGCAAGTAGGAGTGGAGGA+GGG | + | chr1.1:16357134-16357153 | None:intergenic | 55.0% | |
| ! | GAAGCTGTGCGGTTGGTCAA+TGG | - | chr1.1:16357568-16357587 | MS.gene026607:intron | 55.0% |
| GCAAGTAGGAGTGGAGGAGG+GGG | + | chr1.1:16357132-16357151 | None:intergenic | 60.0% | |
| GGCAAGTAGGAGTGGAGGAG+GGG | + | chr1.1:16357133-16357152 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 16355321 | 16358867 | 16355321 | ID=MS.gene026607 |
| chr1.1 | mRNA | 16355321 | 16358867 | 16355321 | ID=MS.gene026607.t1;Parent=MS.gene026607 |
| chr1.1 | exon | 16358738 | 16358867 | 16358738 | ID=MS.gene026607.t1.exon1;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16358738 | 16358867 | 16358738 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16358424 | 16358557 | 16358424 | ID=MS.gene026607.t1.exon2;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16358424 | 16358557 | 16358424 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16358276 | 16358339 | 16358276 | ID=MS.gene026607.t1.exon3;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16358276 | 16358339 | 16358276 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16358079 | 16358161 | 16358079 | ID=MS.gene026607.t1.exon4;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16358079 | 16358161 | 16358079 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16357453 | 16357536 | 16357453 | ID=MS.gene026607.t1.exon5;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16357453 | 16357536 | 16357453 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16357195 | 16357347 | 16357195 | ID=MS.gene026607.t1.exon6;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16357195 | 16357347 | 16357195 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16356582 | 16356758 | 16356582 | ID=MS.gene026607.t1.exon7;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16356582 | 16356758 | 16356582 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16355691 | 16355758 | 16355691 | ID=MS.gene026607.t1.exon8;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16355691 | 16355758 | 16355691 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| chr1.1 | exon | 16355321 | 16355417 | 16355321 | ID=MS.gene026607.t1.exon9;Parent=MS.gene026607.t1 |
| chr1.1 | CDS | 16355321 | 16355417 | 16355321 | ID=cds.MS.gene026607.t1;Parent=MS.gene026607.t1 |
| Gene Sequence |
| Protein sequence |
