Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041065.t1 | XP_003611715.1 | 98.7 | 556 | 7 | 0 | 144 | 699 | 1 | 556 | 0.00E+00 | 1120.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041065.t1 | Q84WV8 | 79.7 | 553 | 111 | 1 | 147 | 699 | 6 | 557 | 2.8e-264 | 912.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041065.t1 | G7K6L6 | 98.7 | 556 | 7 | 0 | 144 | 699 | 1 | 556 | 0.0e+00 | 1120.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041065 | MS.gene35820 | PPI |
| MS.gene041065 | MS.gene034333 | PPI |
| MS.gene041065 | MS.gene011805 | PPI |
| MS.gene041065 | MS.gene62990 | PPI |
| MS.gene041065 | MS.gene027406 | PPI |
| MS.gene041065 | MS.gene054016 | PPI |
| MS.gene041065 | MS.gene026607 | PPI |
| MS.gene027407 | MS.gene041065 | PPI |
| MS.gene041065 | MS.gene064339 | PPI |
| MS.gene041065 | MS.gene87625 | PPI |
| MS.gene35817 | MS.gene041065 | PPI |
| MS.gene56790 | MS.gene041065 | PPI |
| MS.gene041065 | MS.gene83132 | PPI |
| MS.gene59143 | MS.gene041065 | PPI |
| MS.gene041065 | MS.gene90508 | PPI |
| MS.gene054017 | MS.gene041065 | PPI |
| MS.gene041065 | MS.gene35816 | PPI |
| MS.gene041065 | MS.gene95558 | PPI |
| MS.gene041065 | MS.gene99212 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041065.t1 | MTR_5g017050 | 98.741 | 556 | 7 | 0 | 144 | 699 | 1 | 556 | 0.0 | 1140 |
| MS.gene041065.t1 | MTR_4g094805 | 82.394 | 568 | 89 | 3 | 132 | 699 | 1 | 557 | 0.0 | 968 |
| MS.gene041065.t1 | MTR_4g094805 | 81.236 | 437 | 71 | 3 | 132 | 568 | 1 | 426 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041065.t1 | AT2G23420 | 79.747 | 553 | 111 | 1 | 147 | 699 | 6 | 557 | 0.0 | 934 |
| MS.gene041065.t1 | AT4G36940 | 80.586 | 546 | 105 | 1 | 154 | 699 | 15 | 559 | 0.0 | 925 |
| MS.gene041065.t1 | AT2G23420 | 79.017 | 529 | 110 | 1 | 147 | 675 | 6 | 533 | 0.0 | 885 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTCCATTGAGGAGGAATT+TGG | 0.178770 | 5.2:+9228442 | MS.gene041065:CDS |
| TCTAAAACTTTACTCGAGTT+TGG | 0.251911 | 5.2:+9225547 | MS.gene041065:CDS |
| TGTTATGCTCAAGCAGCTTT+AGG | 0.281610 | 5.2:+9228751 | MS.gene041065:CDS |
| AATTTGGATTATCCGGTTTC+GGG | 0.282735 | 5.2:+9228458 | MS.gene041065:CDS |
| CATCTAATGTTTCCTCATTA+AGG | 0.283750 | 5.2:-9228507 | None:intergenic |
| GAATTTGGATTATCCGGTTT+CGG | 0.293284 | 5.2:+9228457 | MS.gene041065:CDS |
| CCTCTTGAAGTCATTGGATT+TGG | 0.298272 | 5.2:+9220924 | MS.gene041065:CDS |
| TGTTATATTGGAGGATTTGA+TGG | 0.318116 | 5.2:+9225710 | MS.gene041065:CDS |
| AAATTGGCTGAACAAAATTA+AGG | 0.328850 | 5.2:+9227030 | MS.gene041065:CDS |
| GTTGCAGCAGGAAGGTTATT+CGG | 0.330856 | 5.2:+9226461 | MS.gene041065:CDS |
| GCATTAGCTCTCAGTGATCT+AGG | 0.333050 | 5.2:+9228130 | MS.gene041065:CDS |
| AAGCGAATTTATAGATTGTA+TGG | 0.333174 | 5.2:+9228950 | MS.gene041065:CDS |
| GGCTCAATGAGGCACCTGTT+GGG | 0.338570 | 5.2:+9230100 | MS.gene041065:CDS |
| CACATTCAATTACTGTGAAT+TGG | 0.344821 | 5.2:-9220682 | None:intergenic |
| TGCCTTCGTTAGCTCATATA+TGG | 0.351147 | 5.2:+9226511 | MS.gene041065:CDS |
| CTATGGAATTGGAACATATC+TGG | 0.358504 | 5.2:+9228723 | MS.gene041065:CDS |
| AATTGGCTCTTGATGCTATA+AGG | 0.358616 | 5.2:-9220665 | None:intergenic |
| TGCTGTCAGCTCACTTTGAT+TGG | 0.359004 | 5.2:-9227636 | None:intergenic |
| TTAAAGCTACAGACCTTGTA+TGG | 0.365728 | 5.2:-9229972 | None:intergenic |
| GGTTTCTTTGACTATCTTAG+AGG | 0.369670 | 5.2:+9225220 | MS.gene041065:CDS |
| TGTTACTGTGATGGGAGTTC+AGG | 0.370863 | 5.2:+9229574 | MS.gene041065:CDS |
| ATTAGATGCTTTAAATAAAC+AGG | 0.371497 | 5.2:+9228522 | MS.gene041065:CDS |
| CGGACAACGGCAACGGCAAA+GGG | 0.372942 | 5.2:+9222953 | MS.gene041065:CDS |
| GCATCAAAGTACTGTTATAT+TGG | 0.382884 | 5.2:+9225698 | MS.gene041065:CDS |
| GGCGATCCTCTTGAAGTCAT+TGG | 0.387129 | 5.2:+9220918 | MS.gene041065:CDS |
| ACAAGGGCAAGAAAGTTATT+AGG | 0.387902 | 5.2:-9227683 | None:intergenic |
| GAGGTTGATGCCTATGGAAT+TGG | 0.387982 | 5.2:+9228712 | MS.gene041065:CDS |
| AGGTGTTACCATTGGATTTG+TGG | 0.388294 | 5.2:-9224446 | None:intergenic |
| TGGATTTGGCGGTGGCTTTG+AGG | 0.389146 | 5.2:+9220938 | MS.gene041065:CDS |
| ACCATTGGATTTGTGGGTCC+AGG | 0.389697 | 5.2:-9224439 | None:intergenic |
| TCCGATATGGAATGATGAAA+TGG | 0.390752 | 5.2:+9222995 | MS.gene041065:CDS |
| GCCTGGACAATTTGCTGTAA+AGG | 0.391771 | 5.2:-9220590 | None:intergenic |
| CCCATTTCATCATTCCATAT+CGG | 0.393122 | 5.2:-9222996 | None:intergenic |
| TCACAATGGCTTATGCATAC+TGG | 0.397769 | 5.2:+9224491 | MS.gene041065:CDS |
| ATGGGAGATGGGTTCCGATA+TGG | 0.399733 | 5.2:+9222982 | MS.gene041065:CDS |
| CTATAAATTCGCTTCTTACA+AGG | 0.403197 | 5.2:-9228941 | None:intergenic |
| AATGCAACTGCACAGAAGTT+AGG | 0.406561 | 5.2:-9228112 | None:intergenic |
| GGTGTTACCATTGGATTTGT+GGG | 0.407689 | 5.2:-9224445 | None:intergenic |
| TTGCAGCAGGAAGGTTATTC+GGG | 0.409577 | 5.2:+9226462 | MS.gene041065:CDS |
| CTGGACCTTCAATTCTCATA+AGG | 0.410163 | 5.2:-9225309 | None:intergenic |
| CTTGAAGTCATTGGATTTGG+CGG | 0.418970 | 5.2:+9220927 | MS.gene041065:CDS |
| TGGTTGTAGGACGGCGGTTG+CGG | 0.419878 | 5.2:+9222930 | MS.gene041065:CDS |
| CTGTTGCATACCAATCCATT+TGG | 0.422828 | 5.2:+9221509 | MS.gene041065:CDS |
| TGGACCTTCAATTCTCATAA+GGG | 0.423958 | 5.2:-9225308 | None:intergenic |
| GGATTTGGCGGTGGCTTTGA+GGG | 0.425090 | 5.2:+9220939 | MS.gene041065:CDS |
| CTGCAAAGATGAATGAGTTC+CGG | 0.425780 | 5.2:-9220971 | None:intergenic |
| TAGAAGATACTCACTGCAAC+TGG | 0.430722 | 5.2:-9225328 | None:intergenic |
| GAGGAGGAATTTGGATTATC+CGG | 0.439203 | 5.2:+9228451 | MS.gene041065:CDS |
| TATCACCCTAGAGGGTTTGA+TGG | 0.440381 | 5.2:-9224416 | None:intergenic |
| TTTCTTAAGGATAATTTGCC+TGG | 0.445542 | 5.2:+9224871 | MS.gene041065:CDS |
| CAACGGCAAAGGGGTGTGGA+TGG | 0.453496 | 5.2:+9222963 | MS.gene041065:CDS |
| CTACAGACCTTGTATGGAGT+TGG | 0.453705 | 5.2:-9229966 | None:intergenic |
| AAAGGGGTGTGGATGGGAGA+TGG | 0.455687 | 5.2:+9222970 | MS.gene041065:CDS |
| GCGGACAACGGCAACGGCAA+AGG | 0.459741 | 5.2:+9222952 | MS.gene041065:CDS |
| TGAAGGATGGTGGTGGTTGT+AGG | 0.460224 | 5.2:+9222917 | MS.gene041065:CDS |
| AGTTACTGCAGCTCCCCAAC+AGG | 0.462372 | 5.2:-9230114 | None:intergenic |
| GCAGACATCCTTGCATTGCC+TGG | 0.462527 | 5.2:-9220607 | None:intergenic |
| TATGTCTTTCAAAGGTGGTA+AGG | 0.468795 | 5.2:-9229883 | None:intergenic |
| ATTCTCATAAGGGGAACCTT+GGG | 0.474028 | 5.2:-9225298 | None:intergenic |
| GGTCATGAGGTTGATGCCTA+TGG | 0.474659 | 5.2:+9228706 | MS.gene041065:CDS |
| GAAAAGGATGGGCACCGTAC+TGG | 0.476120 | 5.2:+9220554 | MS.gene041065:CDS |
| TAATCCAAATTCCTCCTCAA+TGG | 0.476472 | 5.2:-9228446 | None:intergenic |
| GTTCCCCTTATGAGAATTGA+AGG | 0.482979 | 5.2:+9225304 | MS.gene041065:CDS |
| CTCTCTCTTATGTCTTTCAA+AGG | 0.483928 | 5.2:-9229891 | None:intergenic |
| TCAAACCTTCGAGACATCTT+CGG | 0.484996 | 5.2:-9228824 | None:intergenic |
| GTTTGGACTACGAAGGGCTC+AGG | 0.485707 | 5.2:+9225564 | MS.gene041065:CDS |
| TGGCTCAATGAGGCACCTGT+TGG | 0.485795 | 5.2:+9230099 | MS.gene041065:CDS |
| GCTCTCTTAGATTCTTGAAA+GGG | 0.488352 | 5.2:-9229514 | None:intergenic |
| GCTTTGAGGGTGACCTCGAC+CGG | 0.488618 | 5.2:+9220952 | MS.gene041065:CDS |
| TTCTAAGATGTTACTGTGAT+GGG | 0.489516 | 5.2:+9229566 | MS.gene041065:CDS |
| ACGGCAACGGCAAAGGGGTG+TGG | 0.490789 | 5.2:+9222959 | MS.gene041065:CDS |
| GATGCACTTACTCCGCCATC+AGG | 0.493088 | 5.2:-9225680 | None:intergenic |
| AATTCTCATAAGGGGAACCT+TGG | 0.495536 | 5.2:-9225299 | None:intergenic |
| TTAAGTCTCCTCATGTGGTC+AGG | 0.498429 | 5.2:-9229942 | None:intergenic |
| TTCGTAAGAATCCATTTGGA+GGG | 0.498604 | 5.2:+9224770 | MS.gene041065:CDS |
| GTGAGTAGAGGTGTTACCAT+TGG | 0.499354 | 5.2:-9224454 | None:intergenic |
| CTTCTAAGATGTTACTGTGA+TGG | 0.499764 | 5.2:+9229565 | MS.gene041065:CDS |
| TCCTTTACAGCAAATTGTCC+AGG | 0.500606 | 5.2:+9220589 | MS.gene041065:CDS |
| AAGGGGTGTGGATGGGAGAT+GGG | 0.500687 | 5.2:+9222971 | MS.gene041065:CDS |
| ATTGTATACTCCCCTCCAAA+TGG | 0.502359 | 5.2:-9224781 | None:intergenic |
| TGCTCTCTTAGATTCTTGAA+AGG | 0.503123 | 5.2:-9229515 | None:intergenic |
| AAATCCAACGGTGGTGCTGA+AGG | 0.509387 | 5.2:+9222900 | MS.gene041065:CDS |
| CTCCAGCTCACCAAATGGAT+TGG | 0.511844 | 5.2:-9221519 | None:intergenic |
| TTGTATGTCCTGCAGAGCCT+TGG | 0.512849 | 5.2:+9226935 | MS.gene041065:intron |
| GATACTCATCTTCCCGAAAC+CGG | 0.514450 | 5.2:-9228470 | None:intergenic |
| TCAAAGTACTGTTATATTGG+AGG | 0.516253 | 5.2:+9225701 | MS.gene041065:CDS |
| ATGGTTCCATCAAACCCTCT+AGG | 0.516301 | 5.2:+9224410 | MS.gene041065:CDS |
| AACGGCAAAGGGGTGTGGAT+GGG | 0.516327 | 5.2:+9222964 | MS.gene041065:CDS |
| GAAGTCATTGGATTTGGCGG+TGG | 0.519248 | 5.2:+9220930 | MS.gene041065:CDS |
| GTTGAAGTTTAGCCATGAAA+AGG | 0.520080 | 5.2:+9220538 | MS.gene041065:CDS |
| CCGATATGGAATGATGAAAT+GGG | 0.520212 | 5.2:+9222996 | MS.gene041065:CDS |
| CAGGTGCCTCATTGAGCCAC+AGG | 0.521745 | 5.2:-9230095 | None:intergenic |
| CAAAGCAGTTGGTATTAGAC+TGG | 0.522905 | 5.2:+9228372 | MS.gene041065:CDS |
| CGTTCTAGCAATGTTGCAGC+AGG | 0.523745 | 5.2:+9226449 | MS.gene041065:intron |
| AGCATTCATATCATATGCAT+TGG | 0.527056 | 5.2:+9227655 | MS.gene041065:CDS |
| GCAACAACAATGGATTCAAA+TGG | 0.527474 | 5.2:+9224391 | MS.gene041065:CDS |
| AAGTTTAGCCATGAAAAGGA+TGG | 0.532523 | 5.2:+9220542 | MS.gene041065:CDS |
| TAGATTTCCCAGCAACAAAA+CGG | 0.535152 | 5.2:-9225528 | None:intergenic |
| AGCGAATTTATAGATTGTAT+GGG | 0.537951 | 5.2:+9228951 | MS.gene041065:CDS |
| GGGGAGTATACAATCTTCGC+TGG | 0.539136 | 5.2:+9224790 | MS.gene041065:CDS |
| TGGTTCCATCAAACCCTCTA+GGG | 0.541796 | 5.2:+9224411 | MS.gene041065:CDS |
| TAATTAATTAGATTGACAAA+AGG | 0.543139 | 5.2:-9225472 | None:intergenic |
| CATTAGCTCTCAGTGATCTA+GGG | 0.547365 | 5.2:+9228131 | MS.gene041065:CDS |
| TGCTCAAGCAGCTTTAGGTG+TGG | 0.548079 | 5.2:+9228756 | MS.gene041065:CDS |
| GCTCAATGAGGCACCTGTTG+GGG | 0.548357 | 5.2:+9230101 | MS.gene041065:CDS |
| TGGGAAAGAAACTTACCCCT+TGG | 0.550513 | 5.2:+9228970 | MS.gene041065:CDS |
| CAGATATGTTCCAATTCCAT+AGG | 0.556191 | 5.2:-9228722 | None:intergenic |
| ACTTAATCCAACTCCATACA+AGG | 0.556323 | 5.2:+9229959 | MS.gene041065:CDS |
| TTACATCATAAGTGTCTACA+AGG | 0.559885 | 5.2:-9227700 | None:intergenic |
| TCATTCATCTTTGCAGAGAG+AGG | 0.563308 | 5.2:+9220978 | MS.gene041065:CDS |
| TGAATCCATTGTTGTTGCGT+TGG | 0.564185 | 5.2:-9224386 | None:intergenic |
| CTAGTCATTATGTCAACCAA+GGG | 0.565418 | 5.2:-9228986 | None:intergenic |
| AAACCCTCTAGGGTGATACC+TGG | 0.568031 | 5.2:+9224421 | MS.gene041065:CDS |
| TTTCGTAAGAATCCATTTGG+AGG | 0.570718 | 5.2:+9224769 | MS.gene041065:CDS |
| TTGGAGGATTTGATGGAACA+AGG | 0.570989 | 5.2:+9225717 | MS.gene041065:CDS |
| CCAAATCCAATGACTTCAAG+AGG | 0.573377 | 5.2:-9220924 | None:intergenic |
| TCTTAGATTCTTGAAAGGGA+TGG | 0.574872 | 5.2:-9229510 | None:intergenic |
| GGATGGTGGTGGTTGTAGGA+CGG | 0.575912 | 5.2:+9222921 | MS.gene041065:CDS |
| GTTCTTTCGTTCCATTGAGG+AGG | 0.576931 | 5.2:+9228435 | MS.gene041065:CDS |
| GTTGCGGCGGACAACGGCAA+CGG | 0.577897 | 5.2:+9222946 | MS.gene041065:CDS |
| CAAATTGTCCAGGCAATGCA+AGG | 0.582347 | 5.2:+9220599 | MS.gene041065:CDS |
| TCTTGACAGGTCATGAGAAG+TGG | 0.583344 | 5.2:+9228085 | MS.gene041065:intron |
| GGTCCAGGTATCACCCTAGA+GGG | 0.584237 | 5.2:-9224424 | None:intergenic |
| AGATGAATGAGTTCCGGTCG+AGG | 0.584730 | 5.2:-9220965 | None:intergenic |
| AATCGACTGTTCCGATGTTG+AGG | 0.584862 | 5.2:+9225243 | MS.gene041065:CDS |
| CATGTGAATGAGTGCCACGA+AGG | 0.584937 | 5.2:-9226490 | None:intergenic |
| TCTCTTATGTCTTTCAAAGG+TGG | 0.585088 | 5.2:-9229888 | None:intergenic |
| ACTCGAGTTTGGACTACGAA+GGG | 0.585364 | 5.2:+9225558 | MS.gene041065:CDS |
| ATGACTTCATTCATCACCTG+TGG | 0.586203 | 5.2:+9230079 | MS.gene041065:CDS |
| GAACACCAACGCAACAACAA+TGG | 0.588592 | 5.2:+9224381 | MS.gene041065:CDS |
| AGTTTAGCCATGAAAAGGAT+GGG | 0.590459 | 5.2:+9220543 | MS.gene041065:CDS |
| TCTAGTCATTATGTCAACCA+AGG | 0.590524 | 5.2:-9228987 | None:intergenic |
| ATGTGAATGAGTGCCACGAA+GGG | 0.591248 | 5.2:-9226489 | None:intergenic |
| ACGGCGGTTGCGGCGGACAA+CGG | 0.591375 | 5.2:+9222940 | MS.gene041065:CDS |
| AGCTAGTAATGACCTTAATG+AGG | 0.591435 | 5.2:+9228495 | MS.gene041065:CDS |
| CTATGCAGATACAAAGCAGT+TGG | 0.592543 | 5.2:+9228361 | MS.gene041065:intron |
| TTGTAGGACGGCGGTTGCGG+CGG | 0.594030 | 5.2:+9222933 | MS.gene041065:CDS |
| GATTGCAACGGCAACCAGTA+CGG | 0.595945 | 5.2:-9220568 | None:intergenic |
| TCTTGATGCTATAAGGTGGT+TGG | 0.598549 | 5.2:-9220658 | None:intergenic |
| CCATCCTTCAGCACCACCGT+TGG | 0.601429 | 5.2:-9222904 | None:intergenic |
| GGACCTTCAATTCTCATAAG+GGG | 0.606623 | 5.2:-9225307 | None:intergenic |
| GAAGTTCTTTCGTTCCATTG+AGG | 0.607401 | 5.2:+9228432 | MS.gene041065:CDS |
| ACCTGGACCCACAAATCCAA+TGG | 0.607932 | 5.2:+9224438 | MS.gene041065:CDS |
| CATATTTATCTAGTGAGTCG+AGG | 0.608617 | 5.2:+9228410 | MS.gene041065:CDS |
| TACTCGAGTTTGGACTACGA+AGG | 0.609673 | 5.2:+9225557 | MS.gene041065:CDS |
| TCTGCACCATCACGTTGTTG+CGG | 0.612098 | 5.2:+9220625 | MS.gene041065:CDS |
| TTAATGCAGGGGCCTGATGG+CGG | 0.615965 | 5.2:+9225668 | MS.gene041065:intron |
| TAATTACAAGATATCTGAGG+AGG | 0.616204 | 5.2:+9224840 | MS.gene041065:CDS |
| TCGTAAGAATCCATTTGGAG+GGG | 0.616773 | 5.2:+9224771 | MS.gene041065:CDS |
| ACTTTCCGAAGATGTCTCGA+AGG | 0.621038 | 5.2:+9228819 | MS.gene041065:CDS |
| CCAACGGTGGTGCTGAAGGA+TGG | 0.621698 | 5.2:+9222904 | MS.gene041065:CDS |
| TGTAGTGCCACAGCATGTTG+AGG | 0.622504 | 5.2:+9229540 | MS.gene041065:CDS |
| GTGAATGAGTGCCACGAAGG+GGG | 0.625443 | 5.2:-9226487 | None:intergenic |
| ACAATGCCGCAACAACGTGA+TGG | 0.625750 | 5.2:-9220631 | None:intergenic |
| GGGTCCAGGTATCACCCTAG+AGG | 0.626976 | 5.2:-9224425 | None:intergenic |
| CTAGCAATGTTGCAGCAGGA+AGG | 0.627156 | 5.2:+9226453 | MS.gene041065:intron |
| TAATTTGCCTGGTTCATGTG+AGG | 0.627412 | 5.2:+9224882 | MS.gene041065:CDS |
| AGAAGCTCCTCAACATGCTG+TGG | 0.627824 | 5.2:-9229547 | None:intergenic |
| ACGGTGGTGCTGAAGGATGG+TGG | 0.627881 | 5.2:+9222907 | MS.gene041065:CDS |
| TCATCACCTGTGGCTCAATG+AGG | 0.629207 | 5.2:+9230089 | MS.gene041065:CDS |
| CTGGTTTAGAAGAATGTGTG+AGG | 0.630791 | 5.2:+9224809 | MS.gene041065:CDS |
| TTACCTACCTCACATGAACC+AGG | 0.636470 | 5.2:-9224889 | None:intergenic |
| ACTCACTAGATAAATATGCA+AGG | 0.640724 | 5.2:-9228405 | None:intergenic |
| GAGGTGTATGCTATTCCCGA+AGG | 0.643288 | 5.2:+9225262 | MS.gene041065:CDS |
| GTTGGTATTAGACTGGACTC+TGG | 0.647209 | 5.2:+9228379 | MS.gene041065:CDS |
| GATGAGGATGAAGAAGCAAG+AGG | 0.648408 | 5.2:+9220897 | MS.gene041065:intron |
| AAATGCGACCTGACCACATG+AGG | 0.650506 | 5.2:+9229934 | MS.gene041065:CDS |
| TTGGATTAAGTCTCCTCATG+TGG | 0.650698 | 5.2:-9229947 | None:intergenic |
| TTTGCTGTAAAGGATTGCAA+CGG | 0.651055 | 5.2:-9220580 | None:intergenic |
| TGGTGGTGGTTGTAGGACGG+CGG | 0.653127 | 5.2:+9222924 | MS.gene041065:CDS |
| TTCTAATTACAAGATATCTG+AGG | 0.653938 | 5.2:+9224837 | MS.gene041065:CDS |
| AATAGCATACACCTCAACAT+CGG | 0.659921 | 5.2:-9225254 | None:intergenic |
| TGATAGTGATCTGTGAGTAG+AGG | 0.668128 | 5.2:-9224466 | None:intergenic |
| GTGGTGCTGAAGGATGGTGG+TGG | 0.669197 | 5.2:+9222910 | MS.gene041065:CDS |
| TGGCTCTTGATGCTATAAGG+TGG | 0.669729 | 5.2:-9220662 | None:intergenic |
| TGTGAATGAGTGCCACGAAG+GGG | 0.672858 | 5.2:-9226488 | None:intergenic |
| GGACAACGGCAACGGCAAAG+GGG | 0.674191 | 5.2:+9222954 | MS.gene041065:CDS |
| TAGTTGCTACTAATGCTGCA+AGG | 0.689587 | 5.2:+9225503 | MS.gene041065:CDS |
| CAGTGGTCAAATTCGCTGTG+TGG | 0.694766 | 5.2:+9227599 | MS.gene041065:intron |
| TACATCATAAGTGTCTACAA+GGG | 0.699226 | 5.2:-9227699 | None:intergenic |
| CACCATATATGAGCTAACGA+AGG | 0.704559 | 5.2:-9226513 | None:intergenic |
| AGATCACTATCAATTCACAA+TGG | 0.712369 | 5.2:+9224477 | MS.gene041065:CDS |
| TAGTCATTATGTCAACCAAG+GGG | 0.727353 | 5.2:-9228985 | None:intergenic |
| ATTTGTCTGAAATGTCACCA+AGG | 0.736685 | 5.2:-9226952 | None:intergenic |
| TCTTCGGAAAGTTTGATACG+CGG | 0.739516 | 5.2:-9228808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 9220533 | 9230134 | 9220533 | ID=MS.gene041065 |
| chr5.2 | mRNA | 9220533 | 9230134 | 9220533 | ID=MS.gene041065.t1;Parent=MS.gene041065 |
| chr5.2 | exon | 9220533 | 9220691 | 9220533 | ID=MS.gene041065.t1.exon1;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9220533 | 9220691 | 9220533 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9220898 | 9220999 | 9220898 | ID=MS.gene041065.t1.exon2;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9220898 | 9220999 | 9220898 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9221507 | 9221530 | 9221507 | ID=MS.gene041065.t1.exon3;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9221507 | 9221530 | 9221507 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9222898 | 9223017 | 9222898 | ID=MS.gene041065.t1.exon4;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9222898 | 9223017 | 9222898 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9224376 | 9224542 | 9224376 | ID=MS.gene041065.t1.exon5;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9224376 | 9224542 | 9224376 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9224756 | 9224903 | 9224756 | ID=MS.gene041065.t1.exon6;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9224756 | 9224903 | 9224756 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9225217 | 9225336 | 9225217 | ID=MS.gene041065.t1.exon7;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9225217 | 9225336 | 9225217 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9225451 | 9225585 | 9225451 | ID=MS.gene041065.t1.exon8;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9225451 | 9225585 | 9225451 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9225677 | 9225738 | 9225677 | ID=MS.gene041065.t1.exon9;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9225677 | 9225738 | 9225677 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9226457 | 9226532 | 9226457 | ID=MS.gene041065.t1.exon10;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9226457 | 9226532 | 9226457 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9226950 | 9227051 | 9226950 | ID=MS.gene041065.t1.exon11;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9226950 | 9227051 | 9226950 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9227602 | 9227718 | 9227602 | ID=MS.gene041065.t1.exon12;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9227602 | 9227718 | 9227602 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9228094 | 9228152 | 9228094 | ID=MS.gene041065.t1.exon13;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9228094 | 9228152 | 9228094 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9228369 | 9228543 | 9228369 | ID=MS.gene041065.t1.exon14;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9228369 | 9228543 | 9228369 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9228706 | 9228840 | 9228706 | ID=MS.gene041065.t1.exon15;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9228706 | 9228840 | 9228706 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9228932 | 9229030 | 9228932 | ID=MS.gene041065.t1.exon16;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9228932 | 9229030 | 9228932 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9229487 | 9229595 | 9229487 | ID=MS.gene041065.t1.exon17;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9229487 | 9229595 | 9229487 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9229868 | 9229980 | 9229868 | ID=MS.gene041065.t1.exon18;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9229868 | 9229980 | 9229868 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| chr5.2 | exon | 9230057 | 9230134 | 9230057 | ID=MS.gene041065.t1.exon19;Parent=MS.gene041065.t1 |
| chr5.2 | CDS | 9230057 | 9230134 | 9230057 | ID=cds.MS.gene041065.t1;Parent=MS.gene041065.t1 |
| Gene Sequence |
| Protein sequence |
