Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026619.t1 | XP_003589593.1 | 97.8 | 185 | 4 | 0 | 1 | 185 | 1 | 185 | 1.70E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026619.t1 | Q84QC1 | 69.2 | 185 | 57 | 0 | 1 | 185 | 1 | 185 | 1.5e-71 | 270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026619.t1 | G7I8G3 | 97.8 | 185 | 4 | 0 | 1 | 185 | 1 | 185 | 1.2e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014703 | MS.gene026619 | PPI |
| MS.gene073038 | MS.gene026619 | PPI |
| MS.gene40358 | MS.gene026619 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026619.t1 | MTR_1g030430 | 97.838 | 185 | 4 | 0 | 1 | 185 | 1 | 185 | 1.37e-134 | 374 |
| MS.gene026619.t1 | MTR_3g109250 | 53.333 | 180 | 83 | 1 | 1 | 179 | 1 | 180 | 2.10e-67 | 205 |
| MS.gene026619.t1 | MTR_1g009210 | 53.552 | 183 | 83 | 2 | 1 | 182 | 1 | 182 | 3.62e-66 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026619.t1 | AT1G44790 | 69.189 | 185 | 57 | 0 | 1 | 185 | 1 | 185 | 7.82e-96 | 276 |
| MS.gene026619.t1 | AT4G31290 | 53.261 | 184 | 85 | 1 | 1 | 183 | 1 | 184 | 2.45e-68 | 208 |
| MS.gene026619.t1 | AT5G26220 | 52.747 | 182 | 85 | 1 | 1 | 181 | 1 | 182 | 7.30e-67 | 204 |
| MS.gene026619.t1 | AT5G26220 | 51.149 | 174 | 84 | 1 | 1 | 173 | 1 | 174 | 6.64e-62 | 190 |
Find 44 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGGCAATATGGGTATT+TGG | 0.224192 | 1.1:-16112296 | MS.gene026619:CDS |
| AAAGACAAAACATGGCAATA+TGG | 0.253101 | 1.1:-16112304 | None:intergenic |
| GCTACAACGCCAGCTATTTC+CGG | 0.314593 | 1.1:-16109134 | MS.gene026619:CDS |
| GAAAAGGCTCTCCTTCAAAT+AGG | 0.367256 | 1.1:-16107945 | MS.gene026619:intron |
| TTTACATTGACCTTCTTGTC+TGG | 0.370032 | 1.1:+16109004 | None:intergenic |
| AGAGGAACCCCTGAGTTTCC+TGG | 0.406968 | 1.1:-16112076 | MS.gene026619:CDS |
| CTACAACGCCAGCTATTTCC+GGG | 0.409648 | 1.1:-16109133 | MS.gene026619:CDS |
| AAAGATCCTTACCTATTTGA+AGG | 0.411187 | 1.1:+16107934 | None:intergenic |
| AAGACAAAACATGGCAATAT+GGG | 0.423063 | 1.1:-16112303 | None:intergenic |
| AGGAAAAGATACTCTCTGTT+AGG | 0.426813 | 1.1:+16107972 | None:intergenic |
| GCAATATGGGTATTTGGTTA+CGG | 0.427063 | 1.1:-16112290 | MS.gene026619:CDS |
| CGTGTTGTTGGTTTCATCAA+AGG | 0.430451 | 1.1:-16112230 | MS.gene026619:CDS |
| AACTACGATGAACGTGTTGT+TGG | 0.430535 | 1.1:-16112242 | MS.gene026619:CDS |
| GCCAGCTATTTCCGGGGCAT+TGG | 0.452973 | 1.1:-16109126 | MS.gene026619:CDS |
| TTACATTGACCTTCTTGTCT+GGG | 0.454173 | 1.1:+16109005 | None:intergenic |
| TTGATCTTGCAAATGAAGTC+AGG | 0.482220 | 1.1:-16107824 | MS.gene026619:CDS |
| ACACAAATTTCTCCATCAGC+AGG | 0.508746 | 1.1:+16112034 | None:intergenic |
| ACCAATGCCCCGGAAATAGC+TGG | 0.509461 | 1.1:+16109125 | None:intergenic |
| GATCAATAACATGCTTGTCT+TGG | 0.509648 | 1.1:+16107841 | None:intergenic |
| ACAGTTCTACCAGGAAACTC+AGG | 0.518664 | 1.1:+16112067 | None:intergenic |
| AAGGTCAATGTAAATTATCT+AGG | 0.519474 | 1.1:-16108995 | MS.gene026619:CDS |
| TTTCGACGTGTCTTCTACCA+AGG | 0.534410 | 1.1:-16112206 | MS.gene026619:intron |
| GGTTCTTTGATTTCAAAAGC+AGG | 0.540195 | 1.1:-16112269 | MS.gene026619:CDS |
| GTCACATTGGAACCTGCTGA+TGG | 0.545101 | 1.1:-16112046 | MS.gene026619:CDS |
| TATAGCATCCCCAGACAAGA+AGG | 0.550775 | 1.1:-16109014 | MS.gene026619:CDS |
| TACTCTCTGTTAGGTCCTGT+GGG | 0.551232 | 1.1:+16107981 | None:intergenic |
| ATACTCTCTGTTAGGTCCTG+TGG | 0.551871 | 1.1:+16107980 | None:intergenic |
| TGCACAGTATCTGGGAGTGC+GGG | 0.556827 | 1.1:-16109315 | MS.gene026619:intron |
| TACATTGACCTTCTTGTCTG+GGG | 0.558045 | 1.1:+16109006 | None:intergenic |
| GTAATTGCTGCACAGTATCT+GGG | 0.564368 | 1.1:-16109323 | MS.gene026619:intron |
| TTAGGTTCTACTGATCATAG+AGG | 0.594149 | 1.1:-16112094 | MS.gene026619:intron |
| TCCAATGTGACAGTTCTACC+AGG | 0.598973 | 1.1:+16112058 | None:intergenic |
| CTGCACAGTATCTGGGAGTG+CGG | 0.602691 | 1.1:-16109316 | MS.gene026619:intron |
| GTTCAAGCTGAAGGTCCCAC+AGG | 0.607799 | 1.1:-16107996 | MS.gene026619:CDS |
| CAGTTCTACCAGGAAACTCA+GGG | 0.609640 | 1.1:+16112068 | None:intergenic |
| AGGCAAATAGTTCAAGCTGA+AGG | 0.613298 | 1.1:-16108005 | MS.gene026619:CDS |
| TCCTGGTAGAACTGTCACAT+TGG | 0.616450 | 1.1:-16112059 | MS.gene026619:CDS |
| GGAGAAGCAATACGATCGGA+AGG | 0.618346 | 1.1:-16109294 | MS.gene026619:CDS |
| TTTCACTTACACCAATGCCC+CGG | 0.619835 | 1.1:+16109115 | None:intergenic |
| TGCGGGAGAAGCAATACGAT+CGG | 0.624661 | 1.1:-16109298 | MS.gene026619:CDS |
| CGTCTGTTGAAGAGATTGCA+AGG | 0.629037 | 1.1:-16108967 | MS.gene026619:intron |
| GCAATCTCTTCAACAGACGC+AGG | 0.640958 | 1.1:+16108971 | None:intergenic |
| TACAACGCCAGCTATTTCCG+GGG | 0.703197 | 1.1:-16109132 | MS.gene026619:CDS |
| AGTTCTACCAGGAAACTCAG+GGG | 0.786483 | 1.1:+16112069 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTCTAATTTTTTTTTT+TGG | + | chr1.1:16108342-16108361 | None:intergenic | 10.0% |
| !!! | TCATTATTATATAATTGTTT+TGG | - | chr1.1:16111226-16111245 | MS.gene026619:intron | 10.0% |
| !!! | TTTTTAAAATCTATAACAAA+CGG | - | chr1.1:16108490-16108509 | MS.gene026619:intron | 10.0% |
| !! | ATTATCTATTTAAATGAGTT+AGG | - | chr1.1:16110289-16110308 | MS.gene026619:intron | 15.0% |
| !!! | TTACTTTTAATTCTATATGA+TGG | - | chr1.1:16110572-16110591 | MS.gene026619:intron | 15.0% |
| !! | AAACAAGAGAAAACAAATAT+GGG | - | chr1.1:16111625-16111644 | MS.gene026619:intron | 20.0% |
| !! | AATAATGAATACTCAAGTAA+AGG | + | chr1.1:16111214-16111233 | None:intergenic | 20.0% |
| !! | ATTGAATACAACTACATTTA+AGG | + | chr1.1:16108853-16108872 | None:intergenic | 20.0% |
| !! | CATGATAAGTTAAATCTAAA+AGG | - | chr1.1:16111309-16111328 | MS.gene026619:intron | 20.0% |
| !! | GTAAAACCATTATGAATAAA+AGG | - | chr1.1:16111864-16111883 | MS.gene026619:intron | 20.0% |
| !! | TAAACAAGAGAAAACAAATA+TGG | - | chr1.1:16111624-16111643 | MS.gene026619:intron | 20.0% |
| !! | TATGATATATGACAACATTA+TGG | - | chr1.1:16110184-16110203 | MS.gene026619:intron | 20.0% |
| !! | TCAGCAAAAGTAATTAATTA+TGG | + | chr1.1:16108113-16108132 | None:intergenic | 20.0% |
| !! | TCATTCCTTATTATATTCTT+GGG | - | chr1.1:16110401-16110420 | MS.gene026619:intron | 20.0% |
| !! | TTCATTCCTTATTATATTCT+TGG | - | chr1.1:16110400-16110419 | MS.gene026619:intron | 20.0% |
| !!! | AAAAGGAAATTTTGTTATCT+TGG | - | chr1.1:16109996-16110015 | MS.gene026619:intron | 20.0% |
| !!! | AATGCAATCAATTTTTGAAA+TGG | - | chr1.1:16109559-16109578 | MS.gene026619:intron | 20.0% |
| !!! | CATATTTTTACATCAAGTAT+TGG | - | chr1.1:16111930-16111949 | MS.gene026619:intron | 20.0% |
| !!! | CATTGAACTTAATTTCTTTT+TGG | - | chr1.1:16110456-16110475 | MS.gene026619:CDS | 20.0% |
| !!! | GAAAGCATTATTGAAAATTT+AGG | + | chr1.1:16110383-16110402 | None:intergenic | 20.0% |
| !!! | GGAACTTGATAATTAAAAAT+TGG | + | chr1.1:16108092-16108111 | None:intergenic | 20.0% |
| !!! | TTAATTACTTTTGCTGATTA+AGG | - | chr1.1:16108116-16108135 | MS.gene026619:intron | 20.0% |
| !!! | TTCTATCTTTTTCATATTAC+AGG | - | chr1.1:16112068-16112087 | MS.gene026619:CDS | 20.0% |
| !!! | TTTTATAATCAGTAACAAAC+AGG | + | chr1.1:16108172-16108191 | None:intergenic | 20.0% |
| ! | AAAAACAACAAACACTAAGA+AGG | + | chr1.1:16109468-16109487 | None:intergenic | 25.0% |
| ! | AAAAGTTCAACCTTTATTAG+TGG | + | chr1.1:16110922-16110941 | None:intergenic | 25.0% |
| ! | AAGATAGAAATCAAACTCAA+AGG | + | chr1.1:16112057-16112076 | None:intergenic | 25.0% |
| ! | AAGGTCAATGTAAATTATCT+AGG | - | chr1.1:16111098-16111117 | MS.gene026619:intron | 25.0% |
| ! | ACAATACATCAAAATCTTCA+TGG | - | chr1.1:16107957-16107976 | MS.gene026619:CDS | 25.0% |
| ! | ACGTAAAAAATGTAACAAAC+AGG | - | chr1.1:16108573-16108592 | MS.gene026619:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | - | chr1.1:16110154-16110173 | MS.gene026619:intron | 25.0% |
| ! | ATTAAGTACTTATCAAGAGT+GGG | - | chr1.1:16109309-16109328 | MS.gene026619:CDS | 25.0% |
| ! | CGAAGATAAAAAGTTAAATG+TGG | + | chr1.1:16109431-16109450 | None:intergenic | 25.0% |
| ! | CTCTTGAAAAAATTGTTGAT+TGG | - | chr1.1:16109199-16109218 | MS.gene026619:intron | 25.0% |
| ! | CTGTTACATTAACTTAACAA+AGG | + | chr1.1:16109274-16109293 | None:intergenic | 25.0% |
| ! | GAATCATAATACCTAGATAT+AGG | - | chr1.1:16111402-16111421 | MS.gene026619:intron | 25.0% |
| ! | GACTATAATTATAAGTCTCA+AGG | + | chr1.1:16110618-16110637 | None:intergenic | 25.0% |
| ! | GATAATCTATTGGACATATA+AGG | + | chr1.1:16109836-16109855 | None:intergenic | 25.0% |
| ! | GTTACTTATTCCACTAATAA+AGG | - | chr1.1:16110909-16110928 | MS.gene026619:intron | 25.0% |
| ! | TGTTACAAAGAATGTTATGA+TGG | + | chr1.1:16110438-16110457 | None:intergenic | 25.0% |
| ! | TTATCTTCGCTTAATTACAT+TGG | - | chr1.1:16109442-16109461 | MS.gene026619:intron | 25.0% |
| ! | TTGAATTTGAAAAGTAACCT+TGG | + | chr1.1:16107907-16107926 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAACTTG+TGG | - | chr1.1:16108737-16108756 | MS.gene026619:intron | 25.0% |
| !! | CATTTTGCAAAAGGTTAAAA+AGG | + | chr1.1:16109013-16109032 | None:intergenic | 25.0% |
| !! | CTTTTTAACCTTTTGCAAAA+TGG | - | chr1.1:16109011-16109030 | MS.gene026619:CDS | 25.0% |
| !! | GTTTCTTTCATAGTTTTTCT+AGG | + | chr1.1:16110125-16110144 | None:intergenic | 25.0% |
| !! | TAAGTTAACCATTTTGCAAA+AGG | + | chr1.1:16109022-16109041 | None:intergenic | 25.0% |
| !! | TATTTACTAGTCTCAATTTG+TGG | - | chr1.1:16111176-16111195 | MS.gene026619:intron | 25.0% |
| !! | TCAAACTTTTAACCAAGTTT+TGG | - | chr1.1:16109720-16109739 | MS.gene026619:intron | 25.0% |
| !! | TGCTAGTTTGACAAAAATAA+GGG | + | chr1.1:16111678-16111697 | None:intergenic | 25.0% |
| !! | TTTTGACAAGTATTAGCTAT+TGG | + | chr1.1:16109959-16109978 | None:intergenic | 25.0% |
| !!! | AAGGTTGAACTTTTTTTTTC+AGG | - | chr1.1:16110928-16110947 | MS.gene026619:intron | 25.0% |
| !!! | CACTTTTTTGTATTTTTGTG+TGG | - | chr1.1:16111445-16111464 | MS.gene026619:intron | 25.0% |
| !!! | CTTTTAATTCTATATGATGG+CGG | - | chr1.1:16110575-16110594 | MS.gene026619:intron | 25.0% |
| !!! | GGTTTTAGTTAGTCTTTTTA+AGG | - | chr1.1:16109330-16109349 | MS.gene026619:intron | 25.0% |
| !!! | TATTCACATTGTTTTGAAGT+TGG | - | chr1.1:16109074-16109093 | MS.gene026619:intron | 25.0% |
| !!! | TTACATCAAGTATTGGTTAA+TGG | - | chr1.1:16111937-16111956 | MS.gene026619:intron | 25.0% |
| !!! | TTCATGGTTTTTTCTTTGAT+GGG | - | chr1.1:16107973-16107992 | MS.gene026619:CDS | 25.0% |
| !!! | TTTAGAGATTTTTTTGTCCT+TGG | - | chr1.1:16108218-16108237 | MS.gene026619:intron | 25.0% |
| !!! | TTTTTCTTTGATGGGTTTTT+AGG | - | chr1.1:16107981-16108000 | MS.gene026619:CDS | 25.0% |
| AAAGATCCTTACCTATTTGA+AGG | + | chr1.1:16112162-16112181 | None:intergenic | 30.0% | |
| AATGAACCTAAATTTCCACA+GGG | + | chr1.1:16112021-16112040 | None:intergenic | 30.0% | |
| ACTAAGTGAAATTGACTACA+TGG | + | chr1.1:16110221-16110240 | None:intergenic | 30.0% | |
| ATCTCTATGGGATAATCTAT+TGG | + | chr1.1:16109846-16109865 | None:intergenic | 30.0% | |
| ATGTAGTCAATTTCACTTAG+TGG | - | chr1.1:16110220-16110239 | MS.gene026619:intron | 30.0% | |
| CAAAGGTTCAATTCAACAAA+TGG | + | chr1.1:16109257-16109276 | None:intergenic | 30.0% | |
| CATAGCTAATTAGATCATTG+TGG | - | chr1.1:16111042-16111061 | MS.gene026619:intron | 30.0% | |
| CATTAAGTACTTATCAAGAG+TGG | - | chr1.1:16109308-16109327 | MS.gene026619:CDS | 30.0% | |
| GGATACCCAAGAATATAATA+AGG | + | chr1.1:16110409-16110428 | None:intergenic | 30.0% | |
| TAATGAACCTAAATTTCCAC+AGG | + | chr1.1:16112022-16112041 | None:intergenic | 30.0% | |
| TAGCAATGACTAATCTCTAT+GGG | + | chr1.1:16109858-16109877 | None:intergenic | 30.0% | |
| TCCAGAATAGCTTATGAAAA+CGG | + | chr1.1:16108706-16108725 | None:intergenic | 30.0% | |
| TCTTACGTCATTTCTACAAT+AGG | - | chr1.1:16110344-16110363 | MS.gene026619:intron | 30.0% | |
| TGAAATTCTCAGCATACAAA+AGG | - | chr1.1:16109979-16109998 | MS.gene026619:intron | 30.0% | |
| TGGAACTTACTTCAAAAAGT+CGG | - | chr1.1:16109094-16109113 | MS.gene026619:intron | 30.0% | |
| TGTAGTCAATTTCACTTAGT+GGG | - | chr1.1:16110221-16110240 | MS.gene026619:intron | 30.0% | |
| TTAACTTAGAATGCGAGAAA+TGG | - | chr1.1:16109034-16109053 | MS.gene026619:intron | 30.0% | |
| TTAGCAATGACTAATCTCTA+TGG | + | chr1.1:16109859-16109878 | None:intergenic | 30.0% | |
| TTTGATAAAAGATTGCTGTG+TGG | - | chr1.1:16108961-16108980 | MS.gene026619:intron | 30.0% | |
| ! | AAAATCATCTGAAACTCCAA+TGG | - | chr1.1:16111513-16111532 | MS.gene026619:intron | 30.0% |
| ! | AACTACATTTAAGGCTTGTT+TGG | + | chr1.1:16108844-16108863 | None:intergenic | 30.0% |
| ! | CACACACCTTTTATTCATAA+TGG | + | chr1.1:16111873-16111892 | None:intergenic | 30.0% |
| ! | GTATCTTTTCCTACTTGAAA+AGG | - | chr1.1:16112132-16112151 | MS.gene026619:intron | 30.0% |
| ! | GTGCTAGTTTGACAAAAATA+AGG | + | chr1.1:16111679-16111698 | None:intergenic | 30.0% |
| ! | TCAAGTTGTTTATCCAAACA+AGG | + | chr1.1:16108142-16108161 | None:intergenic | 30.0% |
| ! | TTTTCTTGGATACACATACT+AGG | + | chr1.1:16108887-16108906 | None:intergenic | 30.0% |
| !! | AGTTTCAGATGATTTTCAAG+TGG | + | chr1.1:16111509-16111528 | None:intergenic | 30.0% |
| !! | CTTTTAACCAAGTTTTGGTA+TGG | - | chr1.1:16109725-16109744 | MS.gene026619:intron | 30.0% |
| !! | TATTTTTGTCAAACTAGCAC+CGG | - | chr1.1:16111679-16111698 | MS.gene026619:intron | 30.0% |
| !!! | AATTTTTTCAAGAGCCTACA+CGG | + | chr1.1:16109193-16109212 | None:intergenic | 30.0% |
| !!! | CTTCATGGTTTTTTCTTTGA+TGG | - | chr1.1:16107972-16107991 | MS.gene026619:CDS | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1.1:16108292-16108311 | None:intergenic | 30.0% |
| !!! | GAAAGTCATACTAGTTTTCT+TGG | + | chr1.1:16108901-16108920 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGATCACCTCTT+AGG | - | chr1.1:16112226-16112245 | MS.gene026619:CDS | 30.0% |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr1.1:16108291-16108310 | None:intergenic | 30.0% |
| AAGGGTTCAAACTTTAGCAT+TGG | - | chr1.1:16109772-16109791 | MS.gene026619:intron | 35.0% | |
| ACCCAAGAAAGTTCAAACTT+GGG | - | chr1.1:16109912-16109931 | MS.gene026619:intron | 35.0% | |
| ACTAATTCATAAGCCTCCTA+AGG | + | chr1.1:16111261-16111280 | None:intergenic | 35.0% | |
| ACTTGATTGTCTTGACTGTA+GGG | - | chr1.1:16109159-16109178 | MS.gene026619:intron | 35.0% | |
| AGACAAAATTGCCATCAATC+AGG | + | chr1.1:16111605-16111624 | None:intergenic | 35.0% | |
| AGGAAAAGATACTCTCTGTT+AGG | + | chr1.1:16112124-16112143 | None:intergenic | 35.0% | |
| ATTCTCACATTAGATGGCTT+TGG | + | chr1.1:16110325-16110344 | None:intergenic | 35.0% | |
| CAGTTACAATACATGAACCA+TGG | + | chr1.1:16111987-16112006 | None:intergenic | 35.0% | |
| CATTTGGCCTCAAAAAATCT+TGG | + | chr1.1:16110859-16110878 | None:intergenic | 35.0% | |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1.1:16108290-16108309 | MS.gene026619:intron | 35.0% | |
| CGTAAGATTCTCACATTAGA+TGG | + | chr1.1:16110331-16110350 | None:intergenic | 35.0% | |
| GATCAATAACATGCTTGTCT+TGG | + | chr1.1:16112255-16112274 | None:intergenic | 35.0% | |
| GCAATATGGGTATTTGGTTA+CGG | - | chr1.1:16107803-16107822 | MS.gene026619:CDS | 35.0% | |
| GCTTAAGTAGAGGTAAAAGT+TGG | + | chr1.1:16110642-16110661 | None:intergenic | 35.0% | |
| GTCTCAAGGTTTAAGTATCT+TGG | + | chr1.1:16110604-16110623 | None:intergenic | 35.0% | |
| TACCCAAGAAAGTTCAAACT+TGG | - | chr1.1:16109911-16109930 | MS.gene026619:intron | 35.0% | |
| TACGTCATTTCTACAATAGG+TGG | - | chr1.1:16110347-16110366 | MS.gene026619:intron | 35.0% | |
| TACTTGATTGTCTTGACTGT+AGG | - | chr1.1:16109158-16109177 | MS.gene026619:intron | 35.0% | |
| TGACGTTTGATGAAGAAAGT+AGG | + | chr1.1:16110719-16110738 | None:intergenic | 35.0% | |
| TTAATGTAACAGCTGCTGTA+TGG | - | chr1.1:16109282-16109301 | MS.gene026619:CDS | 35.0% | |
| TTACATTGACCTTCTTGTCT+GGG | + | chr1.1:16111091-16111110 | None:intergenic | 35.0% | |
| TTAGGTTCTACTGATCATAG+AGG | - | chr1.1:16107999-16108018 | MS.gene026619:CDS | 35.0% | |
| TTCAGCATGATCCTATATCT+AGG | + | chr1.1:16111416-16111435 | None:intergenic | 35.0% | |
| TTCATCAAACGTCACTATGT+CGG | - | chr1.1:16110725-16110744 | MS.gene026619:intron | 35.0% | |
| TTGATCTTGCAAATGAAGTC+AGG | - | chr1.1:16112269-16112288 | MS.gene026619:CDS | 35.0% | |
| TTTACATTGACCTTCTTGTC+TGG | + | chr1.1:16111092-16111111 | None:intergenic | 35.0% | |
| ! | GACAAGCATTGTTATATGCA+GGG | - | chr1.1:16108244-16108263 | MS.gene026619:intron | 35.0% |
| ! | GATACTTACTCTGTTTTGCA+AGG | - | chr1.1:16109581-16109600 | MS.gene026619:intron | 35.0% |
| ! | GATTAGTCATTGCTAAACTG+CGG | - | chr1.1:16109863-16109882 | MS.gene026619:intron | 35.0% |
| ! | GGTTCTTTGATTTCAAAAGC+AGG | - | chr1.1:16107824-16107843 | MS.gene026619:CDS | 35.0% |
| !! | AGAATGTTATGATGGATGAG+TGG | + | chr1.1:16110430-16110449 | None:intergenic | 35.0% |
| !! | GATTCCTAGACTTTGAAATG+TGG | + | chr1.1:16111387-16111406 | None:intergenic | 35.0% |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1.1:16108304-16108323 | None:intergenic | 35.0% |
| !!! | AGATTTTTTGAGGCCAAATG+AGG | - | chr1.1:16110859-16110878 | MS.gene026619:intron | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1.1:16108293-16108312 | None:intergenic | 35.0% |
| AACTACGATGAACGTGTTGT+TGG | - | chr1.1:16107851-16107870 | MS.gene026619:intron | 40.0% | |
| ACACAAATTTCTCCATCAGC+AGG | + | chr1.1:16108062-16108081 | None:intergenic | 40.0% | |
| ACGAAATGATGCACCTCATT+TGG | + | chr1.1:16110875-16110894 | None:intergenic | 40.0% | |
| ACGAGTTGTCCGATATCAAA+TGG | - | chr1.1:16109120-16109139 | MS.gene026619:intron | 40.0% | |
| ACTCCAATGGTGATTGATGT+CGG | - | chr1.1:16111526-16111545 | MS.gene026619:intron | 40.0% | |
| AGGCAAATAGTTCAAGCTGA+AGG | - | chr1.1:16112088-16112107 | MS.gene026619:CDS | 40.0% | |
| AGTCACACATGTGCTTATGT+CGG | - | chr1.1:16108795-16108814 | MS.gene026619:intron | 40.0% | |
| CATCAATCAGGTCACTATCT+CGG | + | chr1.1:16111593-16111612 | None:intergenic | 40.0% | |
| CCAAGAAAGTTCAAACTTGG+GGG | - | chr1.1:16109914-16109933 | MS.gene026619:intron | 40.0% | |
| CCCAAGAAAGTTCAAACTTG+GGG | - | chr1.1:16109913-16109932 | MS.gene026619:intron | 40.0% | |
| CCCCAAGTTTGAACTTTCTT+GGG | + | chr1.1:16109916-16109935 | None:intergenic | 40.0% | |
| CGATCTCAGCCATTTGATAT+CGG | + | chr1.1:16109132-16109151 | None:intergenic | 40.0% | |
| CTATCTCGGACATTACAACA+AGG | + | chr1.1:16111579-16111598 | None:intergenic | 40.0% | |
| GAAAAGGCTCTCCTTCAAAT+AGG | - | chr1.1:16112148-16112167 | MS.gene026619:intron | 40.0% | |
| GACACCTTAAACTAGGTCAA+GGG | - | chr1.1:16109754-16109773 | MS.gene026619:intron | 40.0% | |
| GATGCCACATTTCAAAGTCT+AGG | - | chr1.1:16111380-16111399 | MS.gene026619:intron | 40.0% | |
| GTAATTGCTGCACAGTATCT+GGG | - | chr1.1:16110770-16110789 | MS.gene026619:intron | 40.0% | |
| GTGTATGGTGAAACCTGATT+GGG | - | chr1.1:16109797-16109816 | MS.gene026619:intron | 40.0% | |
| TACATTGACCTTCTTGTCTG+GGG | + | chr1.1:16111090-16111109 | None:intergenic | 40.0% | |
| TCAGTCGAATCTCTATCACA+TGG | + | chr1.1:16110048-16110067 | None:intergenic | 40.0% | |
| TCGTGAACTTCTACTTCTGA+GGG | + | chr1.1:16111552-16111571 | None:intergenic | 40.0% | |
| TCTCCAAAAGCAGAAATCCA+CGG | + | chr1.1:16111740-16111759 | None:intergenic | 40.0% | |
| TCTTGGATACACATACTAGG+AGG | + | chr1.1:16108884-16108903 | None:intergenic | 40.0% | |
| TGAACCCTTGACCTAGTTTA+AGG | + | chr1.1:16109761-16109780 | None:intergenic | 40.0% | |
| TGAATGCCCTGTGGAAATTT+AGG | - | chr1.1:16112012-16112031 | MS.gene026619:intron | 40.0% | |
| TGTAATTGCTGCACAGTATC+TGG | - | chr1.1:16110769-16110788 | MS.gene026619:intron | 40.0% | |
| TGTCTTGACTGTAGGGAATA+CGG | - | chr1.1:16109166-16109185 | MS.gene026619:intron | 40.0% | |
| TTTCTTGGGTAACTATGTGC+AGG | + | chr1.1:16109902-16109921 | None:intergenic | 40.0% | |
| ! | AAAGGTGTGTGATCTCGTTA+TGG | - | chr1.1:16111882-16111901 | MS.gene026619:intron | 40.0% |
| ! | CGTGACTTTTGCTTAAGTAG+AGG | + | chr1.1:16110652-16110671 | None:intergenic | 40.0% |
| ! | CTGTTTTGCAAGGAGATAGT+GGG | - | chr1.1:16109591-16109610 | MS.gene026619:intron | 40.0% |
| ! | GATTCGACTGAGTTTTACGT+TGG | - | chr1.1:16110057-16110076 | MS.gene026619:intron | 40.0% |
| ! | GGACAAGCATTGTTATATGC+AGG | - | chr1.1:16108243-16108262 | MS.gene026619:intron | 40.0% |
| ! | GGTTCAAACTTTAGCATTGG+TGG | - | chr1.1:16109775-16109794 | MS.gene026619:intron | 40.0% |
| ! | GTTTTCACTGTAAGTGTCAC+AGG | - | chr1.1:16110833-16110852 | MS.gene026619:intron | 40.0% |
| ! | TCTGTTTTGCAAGGAGATAG+TGG | - | chr1.1:16109590-16109609 | MS.gene026619:intron | 40.0% |
| ! | TGTTTTGCAAGGAGATAGTG+GGG | - | chr1.1:16109592-16109611 | MS.gene026619:intron | 40.0% |
| !! | ACTTTAGCATTGGTGGTGTA+TGG | - | chr1.1:16109782-16109801 | MS.gene026619:intron | 40.0% |
| !! | CCAAGTTTTGGTATGGAACT+CGG | - | chr1.1:16109732-16109751 | MS.gene026619:intron | 40.0% |
| !! | CGTGTTGTTGGTTTCATCAA+AGG | - | chr1.1:16107863-16107882 | MS.gene026619:intron | 40.0% |
| !! | GCCGTTTTCATAAGCTATTC+TGG | - | chr1.1:16108702-16108721 | MS.gene026619:intron | 40.0% |
| !! | TTGCTGATTAAGGCCTTGTT+TGG | - | chr1.1:16108126-16108145 | MS.gene026619:intron | 40.0% |
| !!! | GAGATTTTTTTGTCCTTGGC+AGG | - | chr1.1:16108222-16108241 | MS.gene026619:intron | 40.0% |
| !!! | TCACAGGCCAAGATTTTTTG+AGG | - | chr1.1:16110849-16110868 | MS.gene026619:intron | 40.0% |
| AACTGAGACGATGACCAAAC+CGG | + | chr1.1:16111701-16111720 | None:intergenic | 45.0% | |
| ACAGTTCTACCAGGAAACTC+AGG | + | chr1.1:16108029-16108048 | None:intergenic | 45.0% | |
| AGCATTGTTATATGCAGGGC+CGG | - | chr1.1:16108248-16108267 | MS.gene026619:intron | 45.0% | |
| AGTTCTACCAGGAAACTCAG+GGG | + | chr1.1:16108027-16108046 | None:intergenic | 45.0% | |
| ATACTCTCTGTTAGGTCCTG+TGG | + | chr1.1:16112116-16112135 | None:intergenic | 45.0% | |
| ATGGTGAAACCTGATTGGGA+GGG | - | chr1.1:16109801-16109820 | MS.gene026619:intron | 45.0% | |
| CAGTTCTACCAGGAAACTCA+GGG | + | chr1.1:16108028-16108047 | None:intergenic | 45.0% | |
| CCCCCAAGTTTGAACTTTCT+TGG | + | chr1.1:16109917-16109936 | None:intergenic | 45.0% | |
| CCGAGTTCCATACCAAAACT+TGG | + | chr1.1:16109735-16109754 | None:intergenic | 45.0% | |
| CGAGATAGTGACCTGATTGA+TGG | - | chr1.1:16111591-16111610 | MS.gene026619:intron | 45.0% | |
| CGTCTGTTGAAGAGATTGCA+AGG | - | chr1.1:16111126-16111145 | MS.gene026619:intron | 45.0% | |
| CTCGGACATTACAACAAGGA+GGG | + | chr1.1:16111575-16111594 | None:intergenic | 45.0% | |
| GAACTCGGACACCTTAAACT+AGG | - | chr1.1:16109747-16109766 | MS.gene026619:intron | 45.0% | |
| GGACACCTTAAACTAGGTCA+AGG | - | chr1.1:16109753-16109772 | MS.gene026619:intron | 45.0% | |
| GGCTCTCCTTCAAATAGGTA+AGG | - | chr1.1:16112153-16112172 | MS.gene026619:intron | 45.0% | |
| GGTGTATGGTGAAACCTGAT+TGG | - | chr1.1:16109796-16109815 | MS.gene026619:intron | 45.0% | |
| GTCGTGAACTTCTACTTCTG+AGG | + | chr1.1:16111553-16111572 | None:intergenic | 45.0% | |
| GTCTCAGTTGTGAGGACAAA+GGG | - | chr1.1:16111712-16111731 | MS.gene026619:intron | 45.0% | |
| GTGATCTCGTTATGGACACA+CGG | - | chr1.1:16111890-16111909 | MS.gene026619:intron | 45.0% | |
| TAACAATGCTTGTCCTGCCA+AGG | + | chr1.1:16108238-16108257 | None:intergenic | 45.0% | |
| TACTCTCTGTTAGGTCCTGT+GGG | + | chr1.1:16112115-16112134 | None:intergenic | 45.0% | |
| TAGTCATTGCTAAACTGCGG+TGG | - | chr1.1:16109866-16109885 | MS.gene026619:intron | 45.0% | |
| TATAGCATCCCCAGACAAGA+AGG | - | chr1.1:16111079-16111098 | MS.gene026619:intron | 45.0% | |
| TATGGTGAAACCTGATTGGG+AGG | - | chr1.1:16109800-16109819 | MS.gene026619:intron | 45.0% | |
| TCCAATGTGACAGTTCTACC+AGG | + | chr1.1:16108038-16108057 | None:intergenic | 45.0% | |
| TCCTGGTAGAACTGTCACAT+TGG | - | chr1.1:16108034-16108053 | MS.gene026619:intron | 45.0% | |
| TCTCAGTTGTGAGGACAAAG+GGG | - | chr1.1:16111713-16111732 | MS.gene026619:intron | 45.0% | |
| TCTCGGACATTACAACAAGG+AGG | + | chr1.1:16111576-16111595 | None:intergenic | 45.0% | |
| TGAACCATGGCAAGTTCTAC+TGG | + | chr1.1:16111974-16111993 | None:intergenic | 45.0% | |
| TGGGTAACTATGTGCAGGAA+AGG | + | chr1.1:16109897-16109916 | None:intergenic | 45.0% | |
| TTCATAAGCCTCCTAAGGCA+AGG | + | chr1.1:16111256-16111275 | None:intergenic | 45.0% | |
| TTTCACTTACACCAATGCCC+CGG | + | chr1.1:16110981-16111000 | None:intergenic | 45.0% | |
| TTTCGACGTGTCTTCTACCA+AGG | - | chr1.1:16107887-16107906 | MS.gene026619:intron | 45.0% | |
| !! | ACTGTGTTTTGAATGCCCTG+TGG | - | chr1.1:16112003-16112022 | MS.gene026619:intron | 45.0% |
| !! | TTGTCAAACTAGCACCGGTT+TGG | - | chr1.1:16111684-16111703 | MS.gene026619:intron | 45.0% |
| !!! | GAAGGAGAGCCTTTTCAAGT+AGG | + | chr1.1:16112144-16112163 | None:intergenic | 45.0% |
| !!! | GATTTTCAAGTGGCGATCCA+AGG | + | chr1.1:16111499-16111518 | None:intergenic | 45.0% |
| !!! | GTTTTGGAGATCCTTGCCTT+AGG | - | chr1.1:16111242-16111261 | MS.gene026619:intron | 45.0% |
| ACCATGGCAAGTTCTACTGG+CGG | + | chr1.1:16111971-16111990 | None:intergenic | 50.0% | |
| ACCTCTAGTGGTCGCATACT+AGG | + | chr1.1:16110093-16110112 | None:intergenic | 50.0% | |
| AGTATGCGACCACTAGAGGT+AGG | - | chr1.1:16110093-16110112 | MS.gene026619:intron | 50.0% | |
| CATTGTTATATGCAGGGCCG+GGG | - | chr1.1:16108250-16108269 | MS.gene026619:intron | 50.0% | |
| CGTCTCAGTTGTGAGGACAA+AGG | - | chr1.1:16111711-16111730 | MS.gene026619:intron | 50.0% | |
| GCAATCTCTTCAACAGACGC+AGG | + | chr1.1:16111125-16111144 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGCC+GGG | - | chr1.1:16108249-16108268 | MS.gene026619:intron | 50.0% | |
| GCTTGTCTTGGCATCCTAAG+AGG | + | chr1.1:16112243-16112262 | None:intergenic | 50.0% | |
| GGAGAAGCAATACGATCGGA+AGG | - | chr1.1:16110799-16110818 | MS.gene026619:intron | 50.0% | |
| GTATGCGACCACTAGAGGTA+GGG | - | chr1.1:16110094-16110113 | MS.gene026619:intron | 50.0% | |
| GTCACATTGGAACCTGCTGA+TGG | - | chr1.1:16108047-16108066 | MS.gene026619:intron | 50.0% | |
| TATGCGACCACTAGAGGTAG+GGG | - | chr1.1:16110095-16110114 | MS.gene026619:intron | 50.0% | |
| TGCGGGAGAAGCAATACGAT+CGG | - | chr1.1:16110795-16110814 | MS.gene026619:intron | 50.0% | |
| TGGTCATCGTCTCAGTTGTG+AGG | - | chr1.1:16111704-16111723 | MS.gene026619:intron | 50.0% | |
| TGGTGAAACCTGATTGGGAG+GGG | - | chr1.1:16109802-16109821 | MS.gene026619:intron | 50.0% | |
| TGGTTCACGAGCAAGTTCCA+CGG | - | chr1.1:16111465-16111484 | MS.gene026619:intron | 50.0% | |
| TTGGAGATCCTTGCCTTAGG+AGG | - | chr1.1:16111245-16111264 | MS.gene026619:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr1.1:16108284-16108303 | None:intergenic | 50.0% |
| ! | CTACAACGCCAGCTATTTCC+GGG | - | chr1.1:16110960-16110979 | MS.gene026619:intron | 50.0% |
| ! | GCTACAACGCCAGCTATTTC+CGG | - | chr1.1:16110959-16110978 | MS.gene026619:intron | 50.0% |
| ! | GGACCGTGGATTTCTGCTTT+TGG | - | chr1.1:16111734-16111753 | MS.gene026619:intron | 50.0% |
| ! | TACAACGCCAGCTATTTCCG+GGG | - | chr1.1:16110961-16110980 | MS.gene026619:intron | 50.0% |
| ACCAATGCCCCGGAAATAGC+TGG | + | chr1.1:16110971-16110990 | None:intergenic | 55.0% | |
| AGAGGAACCCCTGAGTTTCC+TGG | - | chr1.1:16108017-16108036 | MS.gene026619:intron | 55.0% | |
| AGGTCTTCCCCTACCTCTAG+TGG | + | chr1.1:16110105-16110124 | None:intergenic | 55.0% | |
| CTGCACAGTATCTGGGAGTG+CGG | - | chr1.1:16110777-16110796 | MS.gene026619:intron | 55.0% | |
| GATCCAAGGTGATACTGCCG+TGG | + | chr1.1:16111485-16111504 | None:intergenic | 55.0% | |
| GCCTAGTATGCGACCACTAG+AGG | - | chr1.1:16110089-16110108 | MS.gene026619:intron | 55.0% | |
| GGGCCGACATCAATCACCAT+TGG | + | chr1.1:16111532-16111551 | None:intergenic | 55.0% | |
| GTAGGGAATACGGACCGTGT+AGG | - | chr1.1:16109176-16109195 | MS.gene026619:intron | 55.0% | |
| GTTCAAGCTGAAGGTCCCAC+AGG | - | chr1.1:16112097-16112116 | MS.gene026619:intron | 55.0% | |
| GTTCCACGGCAGTATCACCT+TGG | - | chr1.1:16111479-16111498 | MS.gene026619:intron | 55.0% | |
| TCCGCCAGTAGAACTTGCCA+TGG | - | chr1.1:16111967-16111986 | MS.gene026619:intron | 55.0% | |
| TGGCAAGTTCTACTGGCGGA+TGG | + | chr1.1:16111967-16111986 | None:intergenic | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr1.1:16108283-16108302 | None:intergenic | 55.0% |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | + | chr1.1:16108282-16108301 | None:intergenic | 55.0% |
| ! | TGCACAGTATCTGGGAGTGC+GGG | - | chr1.1:16110778-16110797 | MS.gene026619:intron | 55.0% |
| CGAGTTCTCCCCTCCCAATC+AGG | + | chr1.1:16109813-16109832 | None:intergenic | 60.0% | |
| TGTGAGGACAAAGGGGACCG+TGG | - | chr1.1:16111720-16111739 | MS.gene026619:intron | 60.0% | |
| ! | GCCAGCTATTTCCGGGGCAT+TGG | - | chr1.1:16110967-16110986 | MS.gene026619:intron | 60.0% |
| GGTGTCCGGGGTTCGAACCC+CGG | + | chr1.1:16108270-16108289 | None:intergenic | 70.0% | |
| CAGGGCCGGGGTTCGAACCC+CGG | - | chr1.1:16108262-16108281 | MS.gene026619:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 16107800 | 16112315 | 16107800 | ID=MS.gene026619 |
| chr1.1 | mRNA | 16107800 | 16112315 | 16107800 | ID=MS.gene026619.t1;Parent=MS.gene026619 |
| chr1.1 | exon | 16112207 | 16112315 | 16112207 | ID=MS.gene026619.t1.exon1;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16112207 | 16112315 | 16112207 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16112036 | 16112112 | 16112036 | ID=MS.gene026619.t1.exon2;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16112036 | 16112112 | 16112036 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16110452 | 16110505 | 16110452 | ID=MS.gene026619.t1.exon3;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16110452 | 16110505 | 16110452 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16109274 | 16109330 | 16109274 | ID=MS.gene026619.t1.exon4;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16109274 | 16109330 | 16109274 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16109125 | 16109165 | 16109125 | ID=MS.gene026619.t1.exon5;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16109125 | 16109165 | 16109125 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16108968 | 16109039 | 16108968 | ID=MS.gene026619.t1.exon6;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16108968 | 16109039 | 16108968 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16107946 | 16108025 | 16107946 | ID=MS.gene026619.t1.exon7;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16107946 | 16108025 | 16107946 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| chr1.1 | exon | 16107800 | 16107867 | 16107800 | ID=MS.gene026619.t1.exon8;Parent=MS.gene026619.t1 |
| chr1.1 | CDS | 16107800 | 16107867 | 16107800 | ID=cds.MS.gene026619.t1;Parent=MS.gene026619.t1 |
| Gene Sequence |
| Protein sequence |
