Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014703.t1 | XP_003603572.2 | 98.2 | 224 | 4 | 0 | 1 | 224 | 1 | 224 | 3.20E-128 | 467.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014703.t1 | Q84MC1 | 84.6 | 182 | 28 | 0 | 1 | 182 | 1 | 182 | 2.7e-91 | 336.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014703.t1 | G7J2V4 | 98.2 | 224 | 4 | 0 | 1 | 224 | 1 | 224 | 2.3e-128 | 467.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014703 | MS.gene33588 | PPI |
| MS.gene014703 | MS.gene026619 | PPI |
| MS.gene014703 | MS.gene63001 | PPI |
| MS.gene014703 | MS.gene65955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014703.t1 | MTR_3g109250 | 98.214 | 224 | 4 | 0 | 1 | 224 | 1 | 224 | 4.93e-167 | 459 |
| MS.gene014703.t1 | MTR_1g009210 | 80.711 | 197 | 36 | 2 | 1 | 196 | 1 | 196 | 2.28e-117 | 333 |
| MS.gene014703.t1 | MTR_1g030430 | 54.396 | 182 | 82 | 1 | 1 | 182 | 1 | 181 | 1.68e-70 | 213 |
| MS.gene014703.t1 | MTR_1g009155 | 62.500 | 64 | 11 | 1 | 122 | 185 | 3 | 53 | 2.50e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014703.t1 | AT4G31290 | 84.153 | 183 | 29 | 0 | 1 | 183 | 1 | 183 | 6.83e-117 | 332 |
| MS.gene014703.t1 | AT5G26220 | 72.249 | 209 | 53 | 2 | 1 | 206 | 1 | 207 | 1.61e-112 | 321 |
| MS.gene014703.t1 | AT5G26220 | 77.193 | 171 | 39 | 0 | 1 | 171 | 1 | 171 | 1.33e-102 | 295 |
| MS.gene014703.t1 | AT1G44790 | 52.459 | 183 | 86 | 1 | 1 | 183 | 1 | 182 | 4.72e-66 | 202 |
Find 55 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTCCCCTGGAGGATA+TGG | 0.257584 | 3.1:-87050771 | MS.gene014703:CDS |
| TACAGACGCGTCTTTGATTT+AGG | 0.273803 | 3.1:-87051937 | MS.gene014703:intron |
| AGAAAACAACATATACTATC+TGG | 0.274299 | 3.1:-87050795 | MS.gene014703:CDS |
| TCCAAAGTGCAAGTTCTTGC+AGG | 0.307625 | 3.1:+87051778 | None:intergenic |
| TCACTGCATCCCGCTCTTAC+TGG | 0.308644 | 3.1:-87050952 | MS.gene014703:CDS |
| CCTATTGCTTTGGATAGTTA+AGG | 0.347565 | 3.1:-87050295 | None:intergenic |
| TTGGTTATGGCTCACTGGTA+TGG | 0.390542 | 3.1:-87052008 | MS.gene014703:CDS |
| ATGGCCCATGCGGTAACAAC+AGG | 0.410141 | 3.1:-87050634 | MS.gene014703:CDS |
| CTATCTGGGACCTGCTCCCC+TGG | 0.411078 | 3.1:-87050780 | MS.gene014703:CDS |
| AGGCAAATAGCAACCGCTAA+TGG | 0.412342 | 3.1:-87050653 | MS.gene014703:CDS |
| CTATCCAAAGCAATAGGTTC+TGG | 0.416085 | 3.1:+87050301 | None:intergenic |
| CTGGCAGTGGGTGCAACTGA+AGG | 0.420662 | 3.1:+87050320 | None:intergenic |
| ACTGCCAGAACCTATTGCTT+TGG | 0.421046 | 3.1:-87050305 | MS.gene014703:CDS |
| GTGCAACTGAAGGGTTGAAA+TGG | 0.429177 | 3.1:+87050330 | None:intergenic |
| CCTTAACTATCCAAAGCAAT+AGG | 0.443036 | 3.1:+87050295 | None:intergenic |
| CCCTGCAAGAACTTGCACTT+TGG | 0.451715 | 3.1:-87051779 | MS.gene014703:CDS |
| GGAGTTGCTTATTGCGTTCG+AGG | 0.455497 | 3.1:-87051642 | MS.gene014703:CDS |
| GCCATATCCTCCAGGGGAGC+AGG | 0.458987 | 3.1:+87050770 | None:intergenic |
| GAAAAGGCTATGCATAATCT+TGG | 0.466324 | 3.1:-87050593 | MS.gene014703:intron |
| TGCAAGAACTTGCACTTTGG+AGG | 0.469666 | 3.1:-87051776 | MS.gene014703:CDS |
| CGTTCGAGGAGGCCCTGAAA+AGG | 0.481513 | 3.1:-87051628 | MS.gene014703:CDS |
| TGCACTTTGGAGGAGAAAGA+AGG | 0.493990 | 3.1:-87051766 | MS.gene014703:CDS |
| CACAATAACTCCAGTAAGAG+CGG | 0.495349 | 3.1:+87050942 | None:intergenic |
| CCAAAGTGCAAGTTCTTGCA+GGG | 0.511811 | 3.1:+87051779 | None:intergenic |
| TATACCTAGCCATATCCTCC+AGG | 0.525036 | 3.1:+87050762 | None:intergenic |
| TGCAACTGAAGGGTTGAAAT+GGG | 0.528726 | 3.1:+87050331 | None:intergenic |
| AAAGCAATAGGTTCTGGCAG+TGG | 0.533297 | 3.1:+87050307 | None:intergenic |
| GGCTCACTGGTATGGAACCC+AGG | 0.533321 | 3.1:-87052000 | MS.gene014703:CDS |
| GAAAACAACATATACTATCT+GGG | 0.536324 | 3.1:-87050794 | MS.gene014703:CDS |
| CTCCCCTGGAGGATATGGCT+AGG | 0.540649 | 3.1:-87050766 | MS.gene014703:intron |
| GACTCTTGTAAACTTCTACA+AGG | 0.542115 | 3.1:-87051096 | MS.gene014703:intron |
| TTTCATCATAATCAAAACCT+GGG | 0.543292 | 3.1:+87051983 | None:intergenic |
| GCACTTTGGAGGAGAAAGAA+GGG | 0.544976 | 3.1:-87051765 | MS.gene014703:CDS |
| TAGTCCCTGTTGTTACCGCA+TGG | 0.552693 | 3.1:+87050629 | None:intergenic |
| AATGAAGTGAGGAAAGTCCT+TGG | 0.562153 | 3.1:-87050424 | MS.gene014703:CDS |
| ATACCTAGCCATATCCTCCA+GGG | 0.564066 | 3.1:+87050763 | None:intergenic |
| GTTACCGCATGGGCCATTAG+CGG | 0.575609 | 3.1:+87050640 | None:intergenic |
| AAGCAATAGGTTCTGGCAGT+GGG | 0.580614 | 3.1:+87050308 | None:intergenic |
| TGGCAGTGGGTGCAACTGAA+GGG | 0.581577 | 3.1:+87050321 | None:intergenic |
| TCTTGCTTGCACAGGTCATG+AGG | 0.591479 | 3.1:-87050470 | MS.gene014703:intron |
| ACAATAACTCCAGTAAGAGC+GGG | 0.597275 | 3.1:+87050943 | None:intergenic |
| CACTTTGGAGGAGAAAGAAG+GGG | 0.602281 | 3.1:-87051764 | MS.gene014703:CDS |
| AGTCCCTGTTGTTACCGCAT+GGG | 0.604725 | 3.1:+87050630 | None:intergenic |
| GCACTACATTCACCACTCCA+AGG | 0.622706 | 3.1:+87050407 | None:intergenic |
| GGCTGATGTGAAAGTTGCGC+CGG | 0.632554 | 3.1:+87050361 | None:intergenic |
| GTTGCTTATTGCGTTCGAGG+AGG | 0.647222 | 3.1:-87051639 | MS.gene014703:CDS |
| TGTTTGTGTAGTATTTGGAG+CGG | 0.650521 | 3.1:-87051142 | MS.gene014703:intron |
| TCTGGGACCTGCTCCCCTGG+AGG | 0.659747 | 3.1:-87050777 | MS.gene014703:CDS |
| TAGAACTTGCTAATGAAGTG+AGG | 0.661336 | 3.1:-87050435 | MS.gene014703:CDS |
| TGGCCCATGCGGTAACAACA+GGG | 0.668970 | 3.1:-87050633 | MS.gene014703:CDS |
| TACCTAGCCATATCCTCCAG+GGG | 0.696973 | 3.1:+87050764 | None:intergenic |
| GCAACCGCTAATGGCCCATG+CGG | 0.717258 | 3.1:-87050644 | MS.gene014703:CDS |
| AGGGTTGAAATGGGTACATG+CGG | 0.723336 | 3.1:+87050340 | None:intergenic |
| AGTGAGGAAAGTCCTTGGAG+TGG | 0.768117 | 3.1:-87050419 | MS.gene014703:CDS |
| GCAGCATGTATTGATCACAG+AGG | 0.779426 | 3.1:-87051814 | MS.gene014703:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGAAAAAAATAAAATAA+TGG | + | chr3.1:87051265-87051284 | None:intergenic | 10.0% |
| !!! | AAAATTTTGACATAAAAAAG+AGG | + | chr3.1:87051609-87051628 | None:intergenic | 15.0% |
| !!! | AAATTTTGACATAAAAAAGA+GGG | + | chr3.1:87051608-87051627 | None:intergenic | 15.0% |
| !!! | TCTTTTTTATGTCAAAATTT+TGG | - | chr3.1:87051608-87051627 | MS.gene014703:intron | 15.0% |
| !!! | TTAAGTTTAGAATTGTATAA+GGG | + | chr3.1:87050751-87050770 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTAGAATTGTATA+AGG | + | chr3.1:87050752-87050771 | None:intergenic | 15.0% |
| !! | TAAATTATTTATGTGCTTTC+TGG | - | chr3.1:87051137-87051156 | MS.gene014703:intron | 20.0% |
| !! | TTTATGACTTTCTAACTAAA+TGG | - | chr3.1:87050824-87050843 | MS.gene014703:intron | 20.0% |
| !!! | AATTTTGACATAAAAAAGAG+GGG | + | chr3.1:87051607-87051626 | None:intergenic | 20.0% |
| !!! | AGAAAGCACATAAATAATTT+AGG | + | chr3.1:87051138-87051157 | None:intergenic | 20.0% |
| !!! | TCTATTTGTTATTTTAGCTA+GGG | - | chr3.1:87050864-87050883 | MS.gene014703:intron | 20.0% |
| ! | AAAAAATATCCTCCTACAAA+CGG | + | chr3.1:87050807-87050826 | None:intergenic | 25.0% |
| ! | AAAAGCTTATAGCCATATTT+AGG | + | chr3.1:87051088-87051107 | None:intergenic | 25.0% |
| ! | AAAGCTTATAGCCATATTTA+GGG | + | chr3.1:87051087-87051106 | None:intergenic | 25.0% |
| ! | AGAAAACAACATATACTATC+TGG | - | chr3.1:87051526-87051545 | MS.gene014703:intron | 25.0% |
| ! | ATCAACATTTCATGAATGAT+TGG | - | chr3.1:87051443-87051462 | MS.gene014703:intron | 25.0% |
| ! | CGGGAAGATAAAATTATTAT+AGG | + | chr3.1:87050787-87050806 | None:intergenic | 25.0% |
| ! | GAAAACAACATATACTATCT+GGG | - | chr3.1:87051527-87051546 | MS.gene014703:intron | 25.0% |
| ! | GATTATGATGAAAAAATGCT+TGG | - | chr3.1:87050348-87050367 | MS.gene014703:CDS | 25.0% |
| ! | TCATTTGTTTGTGTAGTATT+TGG | - | chr3.1:87051174-87051193 | MS.gene014703:intron | 25.0% |
| ! | TTTCATCATAATCAAAACCT+GGG | + | chr3.1:87050341-87050360 | None:intergenic | 25.0% |
| !! | TTTCTAACTAAATGGATTCT+AGG | - | chr3.1:87050832-87050851 | MS.gene014703:intron | 25.0% |
| !! | TTTTCATCATAATCAAAACC+TGG | + | chr3.1:87050342-87050361 | None:intergenic | 25.0% |
| !!! | ATTGCTAGTTTTGTCTTTAA+TGG | - | chr3.1:87051294-87051313 | MS.gene014703:intron | 25.0% |
| !!! | CTATCTTTTTCTTCTAGAAA+AGG | - | chr3.1:87051712-87051731 | MS.gene014703:intron | 25.0% |
| !!! | GTCTATTTGTTATTTTAGCT+AGG | - | chr3.1:87050863-87050882 | MS.gene014703:intron | 25.0% |
| !!! | TAATTTGTTATCTTTCCTTC+AGG | - | chr3.1:87051338-87051357 | MS.gene014703:intron | 25.0% |
| !!! | TATATGTTGTTTTCTTTGTC+TGG | + | chr3.1:87051521-87051540 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTTTCATTTCAGT+GGG | - | chr3.1:87050657-87050676 | MS.gene014703:intron | 25.0% |
| !!! | TTGTTTTGTTTTCATTTCAG+TGG | - | chr3.1:87050656-87050675 | MS.gene014703:intron | 25.0% |
| AAAAATATCCTCCTACAAAC+GGG | + | chr3.1:87050806-87050825 | None:intergenic | 30.0% | |
| AAAAATGCTTGGCTTCATTA+AGG | - | chr3.1:87050359-87050378 | MS.gene014703:CDS | 30.0% | |
| ACTCAATTAATTCCACATGT+TGG | - | chr3.1:87050409-87050428 | MS.gene014703:CDS | 30.0% | |
| AGCACATAAATAATTTAGGC+AGG | + | chr3.1:87051134-87051153 | None:intergenic | 30.0% | |
| TATTCTTCATGAGCTTATCA+AGG | + | chr3.1:87051002-87051021 | None:intergenic | 30.0% | |
| ! | AATTTTATCTTCCCGTTTGT+AGG | - | chr3.1:87050792-87050811 | MS.gene014703:CDS | 30.0% |
| !! | TCGTTCATATTCTATTTCTG+TGG | - | chr3.1:87050594-87050613 | MS.gene014703:CDS | 30.0% |
| !!! | GTTTTGTTTTCATTTCAGTG+GGG | - | chr3.1:87050658-87050677 | MS.gene014703:intron | 30.0% |
| AAGCAAAGTGTAGACAACAA+TGG | + | chr3.1:87050456-87050475 | None:intergenic | 35.0% | |
| ACTAGCAATCACTAGACATA+AGG | + | chr3.1:87051283-87051302 | None:intergenic | 35.0% | |
| AGCAAAGTGTAGACAACAAT+GGG | + | chr3.1:87050455-87050474 | None:intergenic | 35.0% | |
| AGTAAGTGGAATACAAGGTT+AGG | + | chr3.1:87051634-87051653 | None:intergenic | 35.0% | |
| CTGAACGAGAAAAAATTGGT+TGG | - | chr3.1:87051936-87051955 | MS.gene014703:intron | 35.0% | |
| CTTACTGTGCTTATTCATTC+AGG | - | chr3.1:87051648-87051667 | MS.gene014703:CDS | 35.0% | |
| GAAAAGGCTATGCATAATCT+TGG | - | chr3.1:87051728-87051747 | MS.gene014703:intron | 35.0% | |
| GAATGAATAAGCACAGTAAG+TGG | + | chr3.1:87051648-87051667 | None:intergenic | 35.0% | |
| GACTCTTGTAAACTTCTACA+AGG | - | chr3.1:87051225-87051244 | MS.gene014703:intron | 35.0% | |
| TGTTTGTGTAGTATTTGGAG+CGG | - | chr3.1:87051179-87051198 | MS.gene014703:intron | 35.0% | |
| TTGACATAAAAAAGAGGGGA+AGG | + | chr3.1:87051603-87051622 | None:intergenic | 35.0% | |
| TTGTTATCTTTCCTTCAGGA+AGG | - | chr3.1:87051342-87051361 | MS.gene014703:intron | 35.0% | |
| ! | AGTGCTGAACGAGAAAAAAT+TGG | - | chr3.1:87051932-87051951 | MS.gene014703:intron | 35.0% |
| ! | ATAGCCAGTTTTTCCTTTTC+AGG | + | chr3.1:87050709-87050728 | None:intergenic | 35.0% |
| ! | TAGCCAGTTTTTCCTTTTCA+GGG | + | chr3.1:87050708-87050727 | None:intergenic | 35.0% |
| !! | TAGAACTTGCTAATGAAGTG+AGG | - | chr3.1:87051886-87051905 | MS.gene014703:intron | 35.0% |
| !!! | GTTTTCTGGGTTTTTGGTTA+TGG | - | chr3.1:87050300-87050319 | MS.gene014703:CDS | 35.0% |
| AAAGGAAAAACTGGCTATGC+AGG | - | chr3.1:87050711-87050730 | MS.gene014703:intron | 40.0% | |
| AATGAAGTGAGGAAAGTCCT+TGG | - | chr3.1:87051897-87051916 | MS.gene014703:intron | 40.0% | |
| ACAATAACTCCAGTAAGAGC+GGG | + | chr3.1:87051381-87051400 | None:intergenic | 40.0% | |
| AGCACAGTAAGTGGAATACA+AGG | + | chr3.1:87051639-87051658 | None:intergenic | 40.0% | |
| ATCCCAACATGCCCTAAATA+TGG | - | chr3.1:87051073-87051092 | MS.gene014703:intron | 40.0% | |
| CACAATAACTCCAGTAAGAG+CGG | + | chr3.1:87051382-87051401 | None:intergenic | 40.0% | |
| CGAGAAAAAATTGGTTGGAC+CGG | - | chr3.1:87051941-87051960 | MS.gene014703:CDS | 40.0% | |
| CTATCCAAAGCAATAGGTTC+TGG | + | chr3.1:87052023-87052042 | None:intergenic | 40.0% | |
| TGCAACTGAAGGGTTGAAAT+GGG | + | chr3.1:87051993-87052012 | None:intergenic | 40.0% | |
| TTTATCTTCCCGTTTGTAGG+AGG | - | chr3.1:87050795-87050814 | MS.gene014703:CDS | 40.0% | |
| ! | AGCCATATTTAGGGCATGTT+GGG | + | chr3.1:87051078-87051097 | None:intergenic | 40.0% |
| ! | TACAGACGCGTCTTTGATTT+AGG | - | chr3.1:87050384-87050403 | MS.gene014703:CDS | 40.0% |
| ! | TAGCCATATTTAGGGCATGT+TGG | + | chr3.1:87051079-87051098 | None:intergenic | 40.0% |
| ! | TAGGCAGGCTTAGAAAGTAT+TGG | + | chr3.1:87051119-87051138 | None:intergenic | 40.0% |
| ! | TATTTAGGGCATGTTGGGAT+TGG | + | chr3.1:87051073-87051092 | None:intergenic | 40.0% |
| !! | AGGCAGGCTTAGAAAGTATT+GGG | + | chr3.1:87051118-87051137 | None:intergenic | 40.0% |
| !!! | ATTTTAGCTAGGGACTCGTT+TGG | - | chr3.1:87050874-87050893 | MS.gene014703:intron | 40.0% |
| ACTGCCAGAACCTATTGCTT+TGG | - | chr3.1:87052016-87052035 | MS.gene014703:CDS | 45.0% | |
| AGGCAAATAGCAACCGCTAA+TGG | - | chr3.1:87051668-87051687 | MS.gene014703:intron | 45.0% | |
| AGGCCCTGAAAAGGAAAAAC+TGG | - | chr3.1:87050702-87050721 | MS.gene014703:intron | 45.0% | |
| AGGGTTGAAATGGGTACATG+CGG | + | chr3.1:87051984-87052003 | None:intergenic | 45.0% | |
| ATACCTAGCCATATCCTCCA+GGG | + | chr3.1:87051561-87051580 | None:intergenic | 45.0% | |
| CCAAAGTGCAAGTTCTTGCA+GGG | + | chr3.1:87050545-87050564 | None:intergenic | 45.0% | |
| GTGCAACTGAAGGGTTGAAA+TGG | + | chr3.1:87051994-87052013 | None:intergenic | 45.0% | |
| TATACCTAGCCATATCCTCC+AGG | + | chr3.1:87051562-87051581 | None:intergenic | 45.0% | |
| TCCAAAGTGCAAGTTCTTGC+AGG | + | chr3.1:87050546-87050565 | None:intergenic | 45.0% | |
| TCGAAACTCGTACCAACATG+TGG | + | chr3.1:87050424-87050443 | None:intergenic | 45.0% | |
| TGCAAGAACTTGCACTTTGG+AGG | - | chr3.1:87050545-87050564 | MS.gene014703:intron | 45.0% | |
| TTGGTTATGGCTCACTGGTA+TGG | - | chr3.1:87050313-87050332 | MS.gene014703:CDS | 45.0% | |
| ! | AAAGCAATAGGTTCTGGCAG+TGG | + | chr3.1:87052017-87052036 | None:intergenic | 45.0% |
| ! | AAGCAATAGGTTCTGGCAGT+GGG | + | chr3.1:87052016-87052035 | None:intergenic | 45.0% |
| ! | CAAGTTCTTGCAGGGTTTTC+AGG | + | chr3.1:87050537-87050556 | None:intergenic | 45.0% |
| ! | CACTTTGGAGGAGAAAGAAG+GGG | - | chr3.1:87050557-87050576 | MS.gene014703:intron | 45.0% |
| ! | GCACTTTGGAGGAGAAAGAA+GGG | - | chr3.1:87050556-87050575 | MS.gene014703:intron | 45.0% |
| ! | GCAGCATGTATTGATCACAG+AGG | - | chr3.1:87050507-87050526 | MS.gene014703:intron | 45.0% |
| ! | TGCACTTTGGAGGAGAAAGA+AGG | - | chr3.1:87050555-87050574 | MS.gene014703:intron | 45.0% |
| !!! | GGTTTTTGGTTATGGCTCAC+TGG | - | chr3.1:87050308-87050327 | MS.gene014703:CDS | 45.0% |
| AGCTAGGGACTCGTTTGGAT+TGG | - | chr3.1:87050879-87050898 | MS.gene014703:intron | 50.0% | |
| AGTCCCTGTTGTTACCGCAT+GGG | + | chr3.1:87051694-87051713 | None:intergenic | 50.0% | |
| AGTGAGGAAAGTCCTTGGAG+TGG | - | chr3.1:87051902-87051921 | MS.gene014703:intron | 50.0% | |
| CCCTGCAAGAACTTGCACTT+TGG | - | chr3.1:87050542-87050561 | MS.gene014703:intron | 50.0% | |
| GCACTACATTCACCACTCCA+AGG | + | chr3.1:87051917-87051936 | None:intergenic | 50.0% | |
| GCAGTGAATCTCCTTCCTGA+AGG | + | chr3.1:87051356-87051375 | None:intergenic | 50.0% | |
| GGAGTTGCTTATTGCGTTCG+AGG | - | chr3.1:87050679-87050698 | MS.gene014703:intron | 50.0% | |
| GTTGCTTATTGCGTTCGAGG+AGG | - | chr3.1:87050682-87050701 | MS.gene014703:intron | 50.0% | |
| TACCTAGCCATATCCTCCAG+GGG | + | chr3.1:87051560-87051579 | None:intergenic | 50.0% | |
| TAGTCCCTGTTGTTACCGCA+TGG | + | chr3.1:87051695-87051714 | None:intergenic | 50.0% | |
| TCTTGCTTGCACAGGTCATG+AGG | - | chr3.1:87051851-87051870 | MS.gene014703:intron | 50.0% | |
| TTGAGAGCTCTTGCTTGCAC+AGG | - | chr3.1:87051843-87051862 | MS.gene014703:intron | 50.0% | |
| ATGGCCCATGCGGTAACAAC+AGG | - | chr3.1:87051687-87051706 | MS.gene014703:intron | 55.0% | |
| GGCTGATGTGAAAGTTGCGC+CGG | + | chr3.1:87051963-87051982 | None:intergenic | 55.0% | |
| GTTACCGCATGGGCCATTAG+CGG | + | chr3.1:87051684-87051703 | None:intergenic | 55.0% | |
| TCACTGCATCCCGCTCTTAC+TGG | - | chr3.1:87051369-87051388 | MS.gene014703:intron | 55.0% | |
| TGGCAGTGGGTGCAACTGAA+GGG | + | chr3.1:87052003-87052022 | None:intergenic | 55.0% | |
| TGGCCCATGCGGTAACAACA+GGG | - | chr3.1:87051688-87051707 | MS.gene014703:intron | 55.0% | |
| ACCTGCTCCCCTGGAGGATA+TGG | - | chr3.1:87051550-87051569 | MS.gene014703:intron | 60.0% | |
| CGTTCGAGGAGGCCCTGAAA+AGG | - | chr3.1:87050693-87050712 | MS.gene014703:intron | 60.0% | |
| CTCCCCTGGAGGATATGGCT+AGG | - | chr3.1:87051555-87051574 | MS.gene014703:intron | 60.0% | |
| CTGGCAGTGGGTGCAACTGA+AGG | + | chr3.1:87052004-87052023 | None:intergenic | 60.0% | |
| GCAACCGCTAATGGCCCATG+CGG | - | chr3.1:87051677-87051696 | MS.gene014703:intron | 60.0% | |
| GGCTCACTGGTATGGAACCC+AGG | - | chr3.1:87050321-87050340 | MS.gene014703:CDS | 60.0% | |
| GCCATATCCTCCAGGGGAGC+AGG | + | chr3.1:87051554-87051573 | None:intergenic | 65.0% | |
| ! | CTATCTGGGACCTGCTCCCC+TGG | - | chr3.1:87051541-87051560 | MS.gene014703:intron | 65.0% |
| ! | TCTGGGACCTGCTCCCCTGG+AGG | - | chr3.1:87051544-87051563 | MS.gene014703:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 87050297 | 87052046 | 87050297 | ID=MS.gene014703 |
| chr3.1 | mRNA | 87050297 | 87052046 | 87050297 | ID=MS.gene014703.t1;Parent=MS.gene014703 |
| chr3.1 | exon | 87051938 | 87052046 | 87051938 | ID=MS.gene014703.t1.exon1;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87051938 | 87052046 | 87051938 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87051756 | 87051832 | 87051756 | ID=MS.gene014703.t1.exon2;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87051756 | 87051832 | 87051756 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87051611 | 87051667 | 87051611 | ID=MS.gene014703.t1.exon3;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87051611 | 87051667 | 87051611 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87051097 | 87051153 | 87051097 | ID=MS.gene014703.t1.exon4;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87051097 | 87051153 | 87051097 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87050943 | 87050983 | 87050943 | ID=MS.gene014703.t1.exon5;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87050943 | 87050983 | 87050943 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87050767 | 87050838 | 87050767 | ID=MS.gene014703.t1.exon6;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87050767 | 87050838 | 87050767 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87050594 | 87050673 | 87050594 | ID=MS.gene014703.t1.exon7;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87050594 | 87050673 | 87050594 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| chr3.1 | exon | 87050297 | 87050478 | 87050297 | ID=MS.gene014703.t1.exon8;Parent=MS.gene014703.t1 |
| chr3.1 | CDS | 87050297 | 87050478 | 87050297 | ID=cds.MS.gene014703.t1;Parent=MS.gene014703.t1 |
| Gene Sequence |
| Protein sequence |
