Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40358.t1 | XP_003603572.2 | 97.8 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 2.10E-127 | 464.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40358.t1 | Q84MC1 | 84.1 | 182 | 29 | 0 | 1 | 182 | 1 | 182 | 1.7e-90 | 333.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40358.t1 | G7J2V4 | 97.8 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 1.5e-127 | 464.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40358 | MS.gene63001 | PPI |
| MS.gene40358 | MS.gene65955 | PPI |
| MS.gene33588 | MS.gene40358 | PPI |
| MS.gene40358 | MS.gene026619 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40358.t1 | MTR_3g109250 | 97.768 | 224 | 5 | 0 | 1 | 224 | 1 | 224 | 3.12e-166 | 457 |
| MS.gene40358.t1 | MTR_1g009210 | 80.203 | 197 | 37 | 2 | 1 | 196 | 1 | 196 | 1.40e-116 | 331 |
| MS.gene40358.t1 | MTR_1g030430 | 53.846 | 182 | 83 | 1 | 1 | 182 | 1 | 181 | 1.37e-69 | 211 |
| MS.gene40358.t1 | MTR_1g009155 | 62.500 | 64 | 11 | 1 | 122 | 185 | 3 | 53 | 2.43e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40358.t1 | AT4G31290 | 83.607 | 183 | 30 | 0 | 1 | 183 | 1 | 183 | 4.96e-116 | 330 |
| MS.gene40358.t1 | AT5G26220 | 71.770 | 209 | 54 | 2 | 1 | 206 | 1 | 207 | 1.22e-111 | 319 |
| MS.gene40358.t1 | AT5G26220 | 76.608 | 171 | 40 | 0 | 1 | 171 | 1 | 171 | 1.13e-101 | 292 |
| MS.gene40358.t1 | AT1G44790 | 52.747 | 182 | 85 | 1 | 1 | 182 | 1 | 181 | 1.29e-65 | 201 |
Find 54 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCATTAGCGGTTGCTATT+TGG | 0.193245 | 3.3:-89129200 | None:intergenic |
| ACCTGCTCCACTGGAGGATA+TGG | 0.266481 | 3.3:+89129080 | MS.gene40358:CDS |
| TACAGACGCGTCTTTGATTT+AGG | 0.273803 | 3.3:+89127962 | MS.gene40358:CDS |
| AGAAAACAACATATACTATC+TGG | 0.274299 | 3.3:+89129056 | MS.gene40358:CDS |
| TCCAAAGTGCAAGTTCTTGC+AGG | 0.307625 | 3.3:-89128121 | None:intergenic |
| TCACTGCATCCCGCTCTTAC+TGG | 0.308644 | 3.3:+89128899 | MS.gene40358:CDS |
| CCTATTGCTTTGGATAGTTA+AGG | 0.347565 | 3.3:+89129556 | MS.gene40358:CDS |
| TTGGTTATGGCTCACTGGTA+TGG | 0.390542 | 3.3:+89127891 | MS.gene40358:CDS |
| ATGGCCCGTGCGGTAACAAC+AGG | 0.410141 | 3.3:+89129217 | MS.gene40358:CDS |
| CTATCCAAAGCAATAGGTTC+TGG | 0.416085 | 3.3:-89129550 | None:intergenic |
| AGCCAAATAGCAACCGCTAA+TGG | 0.416726 | 3.3:+89129198 | MS.gene40358:intron |
| CTGGCAGTGGGTGCAACTGA+AGG | 0.420662 | 3.3:-89129531 | None:intergenic |
| ACTGCCAGAACCTATTGCTT+TGG | 0.421046 | 3.3:+89129546 | MS.gene40358:CDS |
| GTGCAACTGAAGGGTTGAAA+TGG | 0.429177 | 3.3:-89129521 | None:intergenic |
| CCTTAACTATCCAAAGCAAT+AGG | 0.443036 | 3.3:-89129556 | None:intergenic |
| CTATCTGGGACCTGCTCCAC+TGG | 0.443265 | 3.3:+89129071 | MS.gene40358:CDS |
| CCCTGCAAGAACTTGCACTT+TGG | 0.451715 | 3.3:+89128120 | MS.gene40358:CDS |
| GGAGTTGCTTATTGCGTTCG+AGG | 0.455497 | 3.3:+89128257 | MS.gene40358:CDS |
| GCCATATCCTCCAGTGGAGC+AGG | 0.460152 | 3.3:-89129081 | None:intergenic |
| GAAAAGGCTATGCATAATCT+TGG | 0.466324 | 3.3:+89129258 | MS.gene40358:CDS |
| TGCAAGAACTTGCACTTTGG+AGG | 0.469666 | 3.3:+89128123 | MS.gene40358:CDS |
| CGTTCGAGGAGGCCCTGAAA+AGG | 0.481513 | 3.3:+89128271 | MS.gene40358:CDS |
| TGCACTTTGGAGGAGAAAGA+AGG | 0.493990 | 3.3:+89128133 | MS.gene40358:CDS |
| CACAATAACTCCAGTAAGAG+CGG | 0.495349 | 3.3:-89128909 | None:intergenic |
| CCAAAGTGCAAGTTCTTGCA+GGG | 0.511811 | 3.3:-89128120 | None:intergenic |
| TGCAACTGAAGGGTTGAAAT+GGG | 0.528726 | 3.3:-89129520 | None:intergenic |
| AAAGCAATAGGTTCTGGCAG+TGG | 0.533297 | 3.3:-89129544 | None:intergenic |
| GGCTCACTGGTATGGAACCC+AGG | 0.533321 | 3.3:+89127899 | MS.gene40358:CDS |
| GTTACCGCACGGGCCATTAG+CGG | 0.536192 | 3.3:-89129211 | None:intergenic |
| GAAAACAACATATACTATCT+GGG | 0.536324 | 3.3:+89129057 | MS.gene40358:CDS |
| GACTCTTGTAAACTTCTACA+AGG | 0.542115 | 3.3:+89128755 | MS.gene40358:CDS |
| TTTCATCATAATCAAAACCT+GGG | 0.543292 | 3.3:-89127916 | None:intergenic |
| GCACTTTGGAGGAGAAAGAA+GGG | 0.544976 | 3.3:+89128134 | MS.gene40358:CDS |
| AATGAAGTGAGGAAAGTCCT+TGG | 0.562153 | 3.3:+89129427 | MS.gene40358:CDS |
| AAGCAATAGGTTCTGGCAGT+GGG | 0.580614 | 3.3:-89129543 | None:intergenic |
| TGGCAGTGGGTGCAACTGAA+GGG | 0.581577 | 3.3:-89129530 | None:intergenic |
| CTCCACTGGAGGATATGGCT+AGG | 0.582307 | 3.3:+89129085 | MS.gene40358:CDS |
| TCTTGCTTGCACAGGTCATG+AGG | 0.591479 | 3.3:+89129381 | MS.gene40358:intron |
| ACAATAACTCCAGTAAGAGC+GGG | 0.597275 | 3.3:-89128908 | None:intergenic |
| CACTTTGGAGGAGAAAGAAG+GGG | 0.602281 | 3.3:+89128135 | MS.gene40358:CDS |
| TAGTCCCTGTTGTTACCGCA+CGG | 0.610018 | 3.3:-89129222 | None:intergenic |
| AGTCCCTGTTGTTACCGCAC+GGG | 0.614977 | 3.3:-89129221 | None:intergenic |
| GCACTACATTCACCACTCCA+AGG | 0.622706 | 3.3:-89129444 | None:intergenic |
| GGCTGATGTGAAAGTTGCGC+CGG | 0.632554 | 3.3:-89129490 | None:intergenic |
| TCTGGGACCTGCTCCACTGG+AGG | 0.633231 | 3.3:+89129074 | MS.gene40358:CDS |
| GTTGCTTATTGCGTTCGAGG+AGG | 0.647222 | 3.3:+89128260 | MS.gene40358:CDS |
| TGTTTGTGTAGTATTTGGAG+CGG | 0.650521 | 3.3:+89128709 | MS.gene40358:intron |
| TAGAACTTGCTAATGAAGTG+AGG | 0.661336 | 3.3:+89129416 | MS.gene40358:CDS |
| TACCTAGCCATATCCTCCAG+TGG | 0.671210 | 3.3:-89129087 | None:intergenic |
| TGGCCCGTGCGGTAACAACA+GGG | 0.686091 | 3.3:+89129218 | MS.gene40358:CDS |
| AGGGTTGAAATGGGTACATG+CGG | 0.723336 | 3.3:-89129511 | None:intergenic |
| GCAACCGCTAATGGCCCGTG+CGG | 0.759900 | 3.3:+89129207 | MS.gene40358:CDS |
| AGTGAGGAAAGTCCTTGGAG+TGG | 0.768117 | 3.3:+89129432 | MS.gene40358:CDS |
| GCAGCATGTATTGATCACAG+AGG | 0.779426 | 3.3:+89128085 | MS.gene40358:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGAAAAAAATAAAATAA+TGG | - | chr3.3:89128795-89128814 | None:intergenic | 10.0% |
| !!! | AAAATTTTGACATAAAAAAG+AGG | - | chr3.3:89129139-89129158 | None:intergenic | 15.0% |
| !!! | AAATTTTGACATAAAAAAGA+GGG | - | chr3.3:89129138-89129157 | None:intergenic | 15.0% |
| !!! | TCTTTTTTATGTCAAAATTT+TGG | + | chr3.3:89129138-89129157 | MS.gene40358:intron | 15.0% |
| !!! | TTAAGTTTAGAATTGTATAA+GGG | - | chr3.3:89128329-89128348 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTAGAATTGTATA+AGG | - | chr3.3:89128330-89128349 | None:intergenic | 15.0% |
| !! | TAAATTATTTATGTGCTTTC+TGG | + | chr3.3:89128667-89128686 | MS.gene40358:intron | 20.0% |
| !! | TTTATGACTTTCTAACTAAA+TGG | + | chr3.3:89128402-89128421 | MS.gene40358:intron | 20.0% |
| !!! | AATTTTGACATAAAAAAGAG+GGG | - | chr3.3:89129137-89129156 | None:intergenic | 20.0% |
| !!! | AGAAAGCACATAAATAATTT+AGG | - | chr3.3:89128668-89128687 | None:intergenic | 20.0% |
| ! | AAAAAATATCCTCCTACAAA+CGG | - | chr3.3:89128385-89128404 | None:intergenic | 25.0% |
| ! | AAAAGCTTATAGCCATATTT+AGG | - | chr3.3:89128618-89128637 | None:intergenic | 25.0% |
| ! | AAAGCTTATAGCCATATTTA+GGG | - | chr3.3:89128617-89128636 | None:intergenic | 25.0% |
| ! | AGAAAACAACATATACTATC+TGG | + | chr3.3:89129056-89129075 | MS.gene40358:CDS | 25.0% |
| ! | ATCAACATTTCATGAATGAT+TGG | + | chr3.3:89128973-89128992 | MS.gene40358:intron | 25.0% |
| ! | CGGGAAGATAAAATTATTAT+AGG | - | chr3.3:89128365-89128384 | None:intergenic | 25.0% |
| ! | GAAAACAACATATACTATCT+GGG | + | chr3.3:89129057-89129076 | MS.gene40358:CDS | 25.0% |
| ! | GATTATGATGAAAAAATGCT+TGG | + | chr3.3:89127926-89127945 | MS.gene40358:CDS | 25.0% |
| ! | TCATTTGTTTGTGTAGTATT+TGG | + | chr3.3:89128704-89128723 | MS.gene40358:intron | 25.0% |
| ! | TTTCATCATAATCAAAACCT+GGG | - | chr3.3:89127919-89127938 | None:intergenic | 25.0% |
| !! | TTTCTAACTAAATGGATTCT+AGG | + | chr3.3:89128410-89128429 | MS.gene40358:intron | 25.0% |
| !! | TTTTCATCATAATCAAAACC+TGG | - | chr3.3:89127920-89127939 | None:intergenic | 25.0% |
| !!! | ATTGCTAGTTTTGTCTTTAA+TGG | + | chr3.3:89128824-89128843 | MS.gene40358:intron | 25.0% |
| !!! | CTATCTTTTTCTTCTAGAAA+AGG | + | chr3.3:89129242-89129261 | MS.gene40358:CDS | 25.0% |
| !!! | TAATTTGTTATCTTTCCTTC+AGG | + | chr3.3:89128868-89128887 | MS.gene40358:intron | 25.0% |
| !!! | TATATGTTGTTTTCTTTGTC+TGG | - | chr3.3:89129051-89129070 | None:intergenic | 25.0% |
| !!! | TCCATTTGTTATTTTAGCTA+GGG | + | chr3.3:89128442-89128461 | MS.gene40358:intron | 25.0% |
| !!! | TGTTTTGTTTTCATTTCAGT+GGG | + | chr3.3:89128235-89128254 | MS.gene40358:intron | 25.0% |
| !!! | TTGTTTTGTTTTCATTTCAG+TGG | + | chr3.3:89128234-89128253 | MS.gene40358:intron | 25.0% |
| AAAAATATCCTCCTACAAAC+GGG | - | chr3.3:89128384-89128403 | None:intergenic | 30.0% | |
| AAAAATGCTTGGCTTCATTA+AGG | + | chr3.3:89127937-89127956 | MS.gene40358:CDS | 30.0% | |
| AGCACATAAATAATTTAGGC+AGG | - | chr3.3:89128664-89128683 | None:intergenic | 30.0% | |
| TCCCTAGCTAAAATAACAAA+TGG | - | chr3.3:89128446-89128465 | None:intergenic | 30.0% | |
| ! | AATTTTATCTTCCCGTTTGT+AGG | + | chr3.3:89128370-89128389 | MS.gene40358:intron | 30.0% |
| !! | TCGTTCATATTCTATTTCTG+TGG | + | chr3.3:89128172-89128191 | MS.gene40358:intron | 30.0% |
| !!! | GTCCATTTGTTATTTTAGCT+AGG | + | chr3.3:89128441-89128460 | MS.gene40358:intron | 30.0% |
| !!! | GTTTTGTTTTCATTTCAGTG+GGG | + | chr3.3:89128236-89128255 | MS.gene40358:intron | 30.0% |
| AAGCAAAGTGTAGACAACAA+TGG | - | chr3.3:89128034-89128053 | None:intergenic | 35.0% | |
| ACTAGCAATCACTAGACATA+AGG | - | chr3.3:89128813-89128832 | None:intergenic | 35.0% | |
| ACTCCATTAATTCCACATGT+TGG | + | chr3.3:89127987-89128006 | MS.gene40358:intron | 35.0% | |
| AGCAAAGTGTAGACAACAAT+GGG | - | chr3.3:89128033-89128052 | None:intergenic | 35.0% | |
| AGTAAGTGGAATACAAGGTT+AGG | - | chr3.3:89129164-89129183 | None:intergenic | 35.0% | |
| CTGAACGAGAAAAAATTGGT+TGG | + | chr3.3:89129466-89129485 | MS.gene40358:CDS | 35.0% | |
| GAAAAGGCTATGCATAATCT+TGG | + | chr3.3:89129258-89129277 | MS.gene40358:CDS | 35.0% | |
| GAATGAATAAGCACAGTAAG+TGG | - | chr3.3:89129178-89129197 | None:intergenic | 35.0% | |
| GACTCTTGTAAACTTCTACA+AGG | + | chr3.3:89128755-89128774 | MS.gene40358:CDS | 35.0% | |
| GTACCAACATGTGGAATTAA+TGG | - | chr3.3:89127993-89128012 | None:intergenic | 35.0% | |
| TGTTTGTGTAGTATTTGGAG+CGG | + | chr3.3:89128709-89128728 | MS.gene40358:intron | 35.0% | |
| TTGACATAAAAAAGAGGGGA+AGG | - | chr3.3:89129133-89129152 | None:intergenic | 35.0% | |
| TTGTTATCTTTCCTTCAGGA+AGG | + | chr3.3:89128872-89128891 | MS.gene40358:intron | 35.0% | |
| ! | AGTGCTGAACGAGAAAAAAT+TGG | + | chr3.3:89129462-89129481 | MS.gene40358:CDS | 35.0% |
| ! | ATAGCCAGTTTTTCCTTTTC+AGG | - | chr3.3:89128287-89128306 | None:intergenic | 35.0% |
| ! | TAGCCAGTTTTTCCTTTTCA+GGG | - | chr3.3:89128286-89128305 | None:intergenic | 35.0% |
| !! | TAGAACTTGCTAATGAAGTG+AGG | + | chr3.3:89129416-89129435 | MS.gene40358:CDS | 35.0% |
| !!! | GTTTTCTGGGTTTTTGGTTA+TGG | + | chr3.3:89127878-89127897 | MS.gene40358:CDS | 35.0% |
| AAAGGAAAAACTGGCTATGC+AGG | + | chr3.3:89128289-89128308 | MS.gene40358:CDS | 40.0% | |
| AATGAAGTGAGGAAAGTCCT+TGG | + | chr3.3:89129427-89129446 | MS.gene40358:CDS | 40.0% | |
| ACAATAACTCCAGTAAGAGC+GGG | - | chr3.3:89128911-89128930 | None:intergenic | 40.0% | |
| AGCACAGTAAGTGGAATACA+AGG | - | chr3.3:89129169-89129188 | None:intergenic | 40.0% | |
| ATCCCAACATGCCCTAAATA+TGG | + | chr3.3:89128603-89128622 | MS.gene40358:intron | 40.0% | |
| CACAATAACTCCAGTAAGAG+CGG | - | chr3.3:89128912-89128931 | None:intergenic | 40.0% | |
| CGAGAAAAAATTGGTTGGAC+CGG | + | chr3.3:89129471-89129490 | MS.gene40358:CDS | 40.0% | |
| CTATCCAAAGCAATAGGTTC+TGG | - | chr3.3:89129553-89129572 | None:intergenic | 40.0% | |
| TGCAACTGAAGGGTTGAAAT+GGG | - | chr3.3:89129523-89129542 | None:intergenic | 40.0% | |
| TTTATCTTCCCGTTTGTAGG+AGG | + | chr3.3:89128373-89128392 | MS.gene40358:intron | 40.0% | |
| ! | AGCCATATTTAGGGCATGTT+GGG | - | chr3.3:89128608-89128627 | None:intergenic | 40.0% |
| ! | TACAGACGCGTCTTTGATTT+AGG | + | chr3.3:89127962-89127981 | MS.gene40358:CDS | 40.0% |
| ! | TAGCCATATTTAGGGCATGT+TGG | - | chr3.3:89128609-89128628 | None:intergenic | 40.0% |
| ! | TAGGCAGGCTTAGAAAGTAT+TGG | - | chr3.3:89128649-89128668 | None:intergenic | 40.0% |
| ! | TATTTAGGGCATGTTGGGAT+TGG | - | chr3.3:89128603-89128622 | None:intergenic | 40.0% |
| !! | AGGCAGGCTTAGAAAGTATT+GGG | - | chr3.3:89128648-89128667 | None:intergenic | 40.0% |
| !!! | ATTTTAGCTAGGGACTCGTT+TGG | + | chr3.3:89128452-89128471 | MS.gene40358:intron | 40.0% |
| ACTGCCAGAACCTATTGCTT+TGG | + | chr3.3:89129546-89129565 | MS.gene40358:CDS | 45.0% | |
| AGCCAAATAGCAACCGCTAA+TGG | + | chr3.3:89129198-89129217 | MS.gene40358:intron | 45.0% | |
| AGGCCCTGAAAAGGAAAAAC+TGG | + | chr3.3:89128280-89128299 | MS.gene40358:CDS | 45.0% | |
| AGGGTTGAAATGGGTACATG+CGG | - | chr3.3:89129514-89129533 | None:intergenic | 45.0% | |
| CCAAAGTGCAAGTTCTTGCA+GGG | - | chr3.3:89128123-89128142 | None:intergenic | 45.0% | |
| GTGCAACTGAAGGGTTGAAA+TGG | - | chr3.3:89129524-89129543 | None:intergenic | 45.0% | |
| TCCAAAGTGCAAGTTCTTGC+AGG | - | chr3.3:89128124-89128143 | None:intergenic | 45.0% | |
| TCGAAACTCGTACCAACATG+TGG | - | chr3.3:89128002-89128021 | None:intergenic | 45.0% | |
| TGCAAGAACTTGCACTTTGG+AGG | + | chr3.3:89128123-89128142 | MS.gene40358:CDS | 45.0% | |
| TTGGTTATGGCTCACTGGTA+TGG | + | chr3.3:89127891-89127910 | MS.gene40358:CDS | 45.0% | |
| ! | AAAGCAATAGGTTCTGGCAG+TGG | - | chr3.3:89129547-89129566 | None:intergenic | 45.0% |
| ! | AAGCAATAGGTTCTGGCAGT+GGG | - | chr3.3:89129546-89129565 | None:intergenic | 45.0% |
| ! | CAAGTTCTTGCAGGGTTTTC+AGG | - | chr3.3:89128115-89128134 | None:intergenic | 45.0% |
| ! | CACTTTGGAGGAGAAAGAAG+GGG | + | chr3.3:89128135-89128154 | MS.gene40358:CDS | 45.0% |
| ! | GCACTTTGGAGGAGAAAGAA+GGG | + | chr3.3:89128134-89128153 | MS.gene40358:CDS | 45.0% |
| ! | GCAGCATGTATTGATCACAG+AGG | + | chr3.3:89128085-89128104 | MS.gene40358:intron | 45.0% |
| ! | TGCACTTTGGAGGAGAAAGA+AGG | + | chr3.3:89128133-89128152 | MS.gene40358:CDS | 45.0% |
| !!! | GGTTTTTGGTTATGGCTCAC+TGG | + | chr3.3:89127886-89127905 | MS.gene40358:CDS | 45.0% |
| AGCTAGGGACTCGTTTGGAT+TGG | + | chr3.3:89128457-89128476 | MS.gene40358:intron | 50.0% | |
| AGTGAGGAAAGTCCTTGGAG+TGG | + | chr3.3:89129432-89129451 | MS.gene40358:CDS | 50.0% | |
| CCCTGCAAGAACTTGCACTT+TGG | + | chr3.3:89128120-89128139 | MS.gene40358:CDS | 50.0% | |
| GCACTACATTCACCACTCCA+AGG | - | chr3.3:89129447-89129466 | None:intergenic | 50.0% | |
| GCAGTGAATCTCCTTCCTGA+AGG | - | chr3.3:89128886-89128905 | None:intergenic | 50.0% | |
| GGAGTTGCTTATTGCGTTCG+AGG | + | chr3.3:89128257-89128276 | MS.gene40358:CDS | 50.0% | |
| GTTGCTTATTGCGTTCGAGG+AGG | + | chr3.3:89128260-89128279 | MS.gene40358:CDS | 50.0% | |
| TACCTAGCCATATCCTCCAG+TGG | - | chr3.3:89129090-89129109 | None:intergenic | 50.0% | |
| TAGTCCCTGTTGTTACCGCA+CGG | - | chr3.3:89129225-89129244 | None:intergenic | 50.0% | |
| TCTTGCTTGCACAGGTCATG+AGG | + | chr3.3:89129381-89129400 | MS.gene40358:intron | 50.0% | |
| TTGAGAGCTCTTGCTTGCAC+AGG | + | chr3.3:89129373-89129392 | MS.gene40358:intron | 50.0% | |
| ! | GGCCATTAGCGGTTGCTATT+TGG | - | chr3.3:89129203-89129222 | None:intergenic | 50.0% |
| ACCTGCTCCACTGGAGGATA+TGG | + | chr3.3:89129080-89129099 | MS.gene40358:CDS | 55.0% | |
| AGTCCCTGTTGTTACCGCAC+GGG | - | chr3.3:89129224-89129243 | None:intergenic | 55.0% | |
| CTCCACTGGAGGATATGGCT+AGG | + | chr3.3:89129085-89129104 | MS.gene40358:CDS | 55.0% | |
| GGCTGATGTGAAAGTTGCGC+CGG | - | chr3.3:89129493-89129512 | None:intergenic | 55.0% | |
| TCACTGCATCCCGCTCTTAC+TGG | + | chr3.3:89128899-89128918 | MS.gene40358:CDS | 55.0% | |
| TGGCAGTGGGTGCAACTGAA+GGG | - | chr3.3:89129533-89129552 | None:intergenic | 55.0% | |
| ATGGCCCGTGCGGTAACAAC+AGG | + | chr3.3:89129217-89129236 | MS.gene40358:CDS | 60.0% | |
| CGTTCGAGGAGGCCCTGAAA+AGG | + | chr3.3:89128271-89128290 | MS.gene40358:CDS | 60.0% | |
| CTGGCAGTGGGTGCAACTGA+AGG | - | chr3.3:89129534-89129553 | None:intergenic | 60.0% | |
| GCCATATCCTCCAGTGGAGC+AGG | - | chr3.3:89129084-89129103 | None:intergenic | 60.0% | |
| GGCTCACTGGTATGGAACCC+AGG | + | chr3.3:89127899-89127918 | MS.gene40358:CDS | 60.0% | |
| GTTACCGCACGGGCCATTAG+CGG | - | chr3.3:89129214-89129233 | None:intergenic | 60.0% | |
| TGGCCCGTGCGGTAACAACA+GGG | + | chr3.3:89129218-89129237 | MS.gene40358:CDS | 60.0% | |
| ! | CTATCTGGGACCTGCTCCAC+TGG | + | chr3.3:89129071-89129090 | MS.gene40358:CDS | 60.0% |
| GCAACCGCTAATGGCCCGTG+CGG | + | chr3.3:89129207-89129226 | MS.gene40358:CDS | 65.0% | |
| ! | TCTGGGACCTGCTCCACTGG+AGG | + | chr3.3:89129074-89129093 | MS.gene40358:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89127875 | 89129576 | 89127875 | ID=MS.gene40358 |
| chr3.3 | mRNA | 89127875 | 89129576 | 89127875 | ID=MS.gene40358.t1;Parent=MS.gene40358 |
| chr3.3 | exon | 89127875 | 89127983 | 89127875 | ID=MS.gene40358.t1.exon1;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89127875 | 89127983 | 89127875 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89128089 | 89128165 | 89128089 | ID=MS.gene40358.t1.exon2;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89128089 | 89128165 | 89128089 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89128254 | 89128310 | 89128254 | ID=MS.gene40358.t1.exon3;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89128254 | 89128310 | 89128254 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89128720 | 89128776 | 89128720 | ID=MS.gene40358.t1.exon4;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89128720 | 89128776 | 89128720 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89128890 | 89128930 | 89128890 | ID=MS.gene40358.t1.exon5;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89128890 | 89128930 | 89128890 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89129035 | 89129106 | 89129035 | ID=MS.gene40358.t1.exon6;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89129035 | 89129106 | 89129035 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89129200 | 89129279 | 89129200 | ID=MS.gene40358.t1.exon7;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89129200 | 89129279 | 89129200 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| chr3.3 | exon | 89129395 | 89129576 | 89129395 | ID=MS.gene40358.t1.exon8;Parent=MS.gene40358.t1 |
| chr3.3 | CDS | 89129395 | 89129576 | 89129395 | ID=cds.MS.gene40358.t1;Parent=MS.gene40358.t1 |
| Gene Sequence |
| Protein sequence |
