AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026929

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026929.t1 MTR_6g007663 96.306 379 5 1 1 370 1 379 0.0 734
MS.gene026929.t1 MTR_2g436750 37.075 294 134 4 75 363 47 294 1.88e-56 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026929.t1 AT5G14790 54.907 377 123 7 1 370 1 337 2.71e-119 349
MS.gene026929.t1 AT3G01450 53.083 373 123 5 1 370 1 324 4.37e-114 335
MS.gene026929.t1 AT3G01450 53.083 373 123 5 1 370 1 324 4.37e-114 335
MS.gene026929.t1 AT4G15830 39.667 300 133 4 68 362 38 294 4.25e-62 201
MS.gene026929.t1 AT3G18530 47.410 251 122 5 1 250 1 242 5.50e-53 179
MS.gene026929.t1 AT3G18530 68.382 136 43 0 115 250 9 144 2.38e-50 169
MS.gene026929.t1 AT3G18530 66.400 125 42 0 126 250 1 125 7.70e-43 149

Find 77 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGGTATGGTTGCAATTT+TGG 0.187233 6.3:-3361467 None:intergenic
TGATCTTATAATAGATTCTT+TGG 0.215909 6.3:+3361219 MS.gene026929:CDS
TCACTCTTCCTTTCAGTTGC+AGG 0.227531 6.3:-3360422 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.3:-3362401 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.3:-3362428 None:intergenic
CAGGAAGCTGGTCGCTCAAT+TGG 0.275487 6.3:-3362283 None:intergenic
TTGGTTTCCCCACATGTTAA+TGG 0.287937 6.3:+3360536 MS.gene026929:CDS
TCAGATACTGTCACGGTCTC+TGG 0.338960 6.3:-3362482 None:intergenic
AGTACAGCTTGAGCACTTAA+AGG 0.343680 6.3:-3362560 None:intergenic
TTCTCGAAGTGTTCCACAAC+TGG 0.360569 6.3:+3361532 MS.gene026929:CDS
CCCACATGTTAATGGAAATC+AGG 0.366358 6.3:+3360544 MS.gene026929:CDS
AGCAGCTCGAACCCTACTTC+TGG 0.366714 6.3:+3362316 MS.gene026929:CDS
CAAGATTCTGTCGCGATCTC+TGG 0.369704 6.3:-3362509 None:intergenic
CAGAGATCGCGACAGAATCT+TGG 0.372783 6.3:+3362510 MS.gene026929:CDS
AATAGATTCTTTGGATCCTC+TGG 0.383460 6.3:+3361228 MS.gene026929:CDS
AGTGGCTGCTGGCACGAGAT+TGG 0.387556 6.3:-3362366 None:intergenic
GCTGATTCTGTTGTAGAGAT+TGG 0.388850 6.3:+3360575 MS.gene026929:CDS
TAGGGTTCGAGCTGCTTCTC+TGG 0.400244 6.3:-3362309 None:intergenic
GTGGCTGCTGGCACGAGATT+GGG 0.420543 6.3:-3362365 None:intergenic
TTGTTTGGATAGGGTGCAAA+AGG 0.439767 6.3:+3362215 MS.gene026929:intron
TGTTAACAGACCCTCTTAGC+TGG 0.450176 6.3:+3360864 MS.gene026929:intron
ACAAGTAGTCATTGATATCA+AGG 0.452524 6.3:-3361423 None:intergenic
CTTGAGCACTTAAAGGAGAA+AGG 0.455045 6.3:-3362553 None:intergenic
GCAAAAGGCATAAATACATA+TGG 0.458559 6.3:+3362230 MS.gene026929:CDS
AAGACCCTCCCGTGCAATGC+TGG 0.466560 6.3:-3362591 None:intergenic
AGGAAGCTGGTCGCTCAATT+GGG 0.467947 6.3:-3362282 None:intergenic
AGAGATCGCGACAGAATCTT+GGG 0.469637 6.3:+3362511 MS.gene026929:CDS
AGCATTGTCAACAGGAGGCT+TGG 0.476134 6.3:-3360468 None:intergenic
CTGGACTAGACTCAAAGGAT+TGG 0.485003 6.3:+3360883 MS.gene026929:CDS
CTTCTCTGGACTCAGGAAGC+TGG 0.493252 6.3:-3362295 None:intergenic
TGCATCCTCTGATACTGTCT+CGG 0.499453 6.3:-3362435 None:intergenic
TGGACTAGACTCAAAGGATT+GGG 0.500742 6.3:+3360884 MS.gene026929:CDS
TGATGCCTTTGCACGAACAC+GGG 0.509631 6.3:-3361501 None:intergenic
AGACTCAAAGGATTGGGTCC+TGG 0.512503 6.3:+3360890 MS.gene026929:CDS
TTGATGCCTTTGCACGAACA+CGG 0.516013 6.3:-3361502 None:intergenic
TTGAGTCTAGTCCAGCTAAG+AGG 0.519140 6.3:-3360875 None:intergenic
CCAAGGCCCTGAAAAGTCCT+AGG 0.528718 6.3:+3361140 MS.gene026929:CDS
GCTTCTTCTCAAGTCTTCAC+AGG 0.533896 6.3:+3361367 MS.gene026929:CDS
TGGATCCTCTGATACTGTCT+CGG 0.534414 6.3:-3362408 None:intergenic
GAAGAGTGAGGGCTCTGGTA+AGG 0.534884 6.3:+3360436 MS.gene026929:CDS
TCCTCAGATACAGTGGCTGC+TGG 0.535902 6.3:-3362377 None:intergenic
TGTGACCAGCATTGCACGGG+AGG 0.542793 6.3:+3362586 MS.gene026929:CDS
GGGTGCTTGTGCTTAAGGTA+TGG 0.543193 6.3:-3361479 None:intergenic
TTCGTGTGACCAGCATTGCA+CGG 0.548504 6.3:+3362582 MS.gene026929:CDS
TGAGTCTAGTCCAGCTAAGA+GGG 0.551003 6.3:-3360874 None:intergenic
ATAATATTCCTGCAACTGAA+AGG 0.555415 6.3:+3360414 MS.gene026929:CDS
GAAAGGAAGAGTGAGGGCTC+TGG 0.555889 6.3:+3360431 MS.gene026929:CDS
AAAGGTACTCATACCAGTTG+TGG 0.558875 6.3:-3361545 None:intergenic
GCCTGATTTCCATTAACATG+TGG 0.560884 6.3:-3360545 None:intergenic
CGAGCTGCTTCTCTGGACTC+AGG 0.564410 6.3:-3362302 None:intergenic
TCGTGTGACCAGCATTGCAC+GGG 0.575627 6.3:+3362583 MS.gene026929:CDS
ATCTCTACAACAGAATCAGC+AGG 0.577215 6.3:-3360572 None:intergenic
TCATTAGCATTGTCAACAGG+AGG 0.580927 6.3:-3360473 None:intergenic
CCTGATTTCCATTAACATGT+GGG 0.582748 6.3:-3360544 None:intergenic
GATGTCGGAGACAGCACTGA+AGG 0.584563 6.3:+3360385 None:intergenic
AATGTCAGCAGATGTCATAA+TGG 0.592994 6.3:-3361182 None:intergenic
GCCAGCAGCCACTGTATCTG+AGG 0.601163 6.3:+3362376 MS.gene026929:CDS
CTTAGCTGGACTAGACTCAA+AGG 0.601990 6.3:+3360878 MS.gene026929:CDS
GATGCCTTTGCACGAACACG+GGG 0.604224 6.3:-3361500 None:intergenic
TGGATCCTCTGATACTGTCA+CGG 0.608295 6.3:-3362462 None:intergenic
GTGACCAGCATTGCACGGGA+GGG 0.615180 6.3:+3362587 MS.gene026929:CDS
CTGATTTCCATTAACATGTG+GGG 0.618242 6.3:-3360543 None:intergenic
TGCAACTGAAAGGAAGAGTG+AGG 0.618257 6.3:+3360424 MS.gene026929:CDS
AACATGTGGGGAAACCAAAG+AGG 0.636905 6.3:-3360531 None:intergenic
TGTGATCACACGTATTGCCA+AGG 0.639205 6.3:+3361123 MS.gene026929:CDS
TACAACAGAATCAGCAGGCA+CGG 0.640260 6.3:-3360567 None:intergenic
GGACAAACGCTTTGTATGTG+AGG 0.643274 6.3:+3361388 MS.gene026929:CDS
GCAACTGAAAGGAAGAGTGA+GGG 0.647825 6.3:+3360425 MS.gene026929:CDS
TGGTTCCTCAGATACTGTCA+CGG 0.648009 6.3:-3362489 None:intergenic
TATTTAGAGTATCACAAACC+AGG 0.649406 6.3:-3360908 None:intergenic
CTTTGGATCCTCAGATACAG+TGG 0.658342 6.3:-3362384 None:intergenic
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.3:+3362403 MS.gene026929:CDS
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.3:+3362430 MS.gene026929:CDS
AAATGTTGATGCTTGTGTCA+AGG 0.672297 6.3:+3360646 MS.gene026929:CDS
AGAGACCGTGACAGTATCTG+AGG 0.675746 6.3:+3362484 MS.gene026929:CDS
AAAGACCGTGACAGTATCAG+AGG 0.679340 6.3:+3362457 MS.gene026929:CDS
ATGCCTTTGCACGAACACGG+GGG 0.759816 6.3:-3361499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAACATAAAAAATTA+TGG - chr6.3:3361752-3361771 None:intergenic 10.0%
!!! ATAAACAAATTAATATTTTC+AGG - chr6.3:3361990-3362009 None:intergenic 10.0%
!!! ATAATTTTTTATGTTTGTTT+TGG + chr6.3:3361751-3361770 MS.gene026929:intron 10.0%
!!! GAAAATATTAATTTGTTTAT+TGG + chr6.3:3361990-3362009 MS.gene026929:intron 10.0%
!!! TAAACAAATTAATATTTTCA+GGG - chr6.3:3361989-3362008 None:intergenic 10.0%
!! TAAATTATTCATATGCTATA+TGG + chr6.3:3361087-3361106 MS.gene026929:intron 15.0%
!! TATATAAAGCTAATAATCAA+AGG - chr6.3:3360792-3360811 None:intergenic 15.0%
!!! ATTATTTTATCCATCTTTTT+TGG + chr6.3:3360670-3360689 MS.gene026929:intron 15.0%
!!! TTATTTTATCCATCTTTTTT+GGG + chr6.3:3360671-3360690 MS.gene026929:intron 15.0%
!! AGAAGCTTTCTTAAATAATT+TGG - chr6.3:3361812-3361831 None:intergenic 20.0%
!! GAAGCTTTCTTAAATAATTT+GGG - chr6.3:3361811-3361830 None:intergenic 20.0%
!! TGATCTTATAATAGATTCTT+TGG + chr6.3:3361219-3361238 MS.gene026929:CDS 20.0%
!! TTGCAAATTTAATAGTACAA+AGG - chr6.3:3361269-3361288 None:intergenic 20.0%
!!! CAATGATTTTAATTGATACA+TGG + chr6.3:3361957-3361976 MS.gene026929:intron 20.0%
! ACATAGCAAAATCAAATAGA+AGG + chr6.3:3361910-3361929 MS.gene026929:intron 25.0%
! CAAATTTAATAGTACAAAGG+AGG - chr6.3:3361266-3361285 None:intergenic 25.0%
! CCTTATGAAAAATAGACAAA+CGG - chr6.3:3360941-3360960 None:intergenic 25.0%
! GTAAATTGACATGTTCTTAA+TGG + chr6.3:3361327-3361346 MS.gene026929:intron 25.0%
! GTCTATGTTAAATTTGTGAA+TGG + chr6.3:3361835-3361854 MS.gene026929:intron 25.0%
! TAACCTGCTAGTATTAATAT+TGG + chr6.3:3362051-3362070 MS.gene026929:intron 25.0%
! TAACGATACTGACATAAAAT+AGG - chr6.3:3360829-3360848 None:intergenic 25.0%
!! AATATGCAATGGTTTTTGTT+TGG + chr6.3:3361051-3361070 MS.gene026929:intron 25.0%
!! AATGTTTTCTGATTGAAAGA+TGG + chr6.3:3361003-3361022 MS.gene026929:intron 25.0%
!! TTAACATCTTCTCTTTTGTT+TGG + chr6.3:3362200-3362219 MS.gene026929:intron 25.0%
!!! AAGTTGATAACCATTGAAAT+TGG + chr6.3:3360717-3360736 MS.gene026929:intron 25.0%
!!! CTATTTGATTTTGCTATGTT+AGG - chr6.3:3361909-3361928 None:intergenic 25.0%
!!! TAATTGGCTTCCTAAAATTT+TGG - chr6.3:3361686-3361705 None:intergenic 25.0%
!!! TGACATAAAATAGGTATTGA+AGG - chr6.3:3360820-3360839 None:intergenic 25.0%
AACCATTGCATATTAAGCAA+TGG - chr6.3:3361045-3361064 None:intergenic 30.0%
AAGAAGAGCAAAAGTCATAA+AGG - chr6.3:3361566-3361585 None:intergenic 30.0%
AATTGACATGTTCTTAATGG+TGG + chr6.3:3361330-3361349 MS.gene026929:intron 30.0%
ACAAGTAGTCATTGATATCA+AGG - chr6.3:3361426-3361445 None:intergenic 30.0%
AGACCAATATTAATACTAGC+AGG - chr6.3:3362057-3362076 None:intergenic 30.0%
ATAATATTCCTGCAACTGAA+AGG + chr6.3:3360414-3360433 MS.gene026929:CDS 30.0%
ATATGCTATATGGTAAACAG+GGG + chr6.3:3361097-3361116 MS.gene026929:intron 30.0%
ATCACAGAAAATCATTTCGT+GGG - chr6.3:3361642-3361661 None:intergenic 30.0%
CATATGCTATATGGTAAACA+GGG + chr6.3:3361096-3361115 MS.gene026929:intron 30.0%
GCTAGGAAGGTTAATAAATA+TGG + chr6.3:3362146-3362165 MS.gene026929:intron 30.0%
TACCATTGCTTAATATGCAA+TGG + chr6.3:3361040-3361059 MS.gene026929:intron 30.0%
TCATATGCTATATGGTAAAC+AGG + chr6.3:3361095-3361114 MS.gene026929:intron 30.0%
TGCTCTGCTAGTATTAATAT+TGG + chr6.3:3362103-3362122 MS.gene026929:intron 30.0%
TTATGGAATTTCATCATCAG+TGG - chr6.3:3361735-3361754 None:intergenic 30.0%
! GCAAAAGGCATAAATACATA+TGG + chr6.3:3362230-3362249 MS.gene026929:CDS 30.0%
! TATTTAGAGTATCACAAACC+AGG - chr6.3:3360911-3360930 None:intergenic 30.0%
! TTAAGGTATGGTTGCAATTT+TGG - chr6.3:3361470-3361489 None:intergenic 30.0%
! TTTTCATTAGCATTGTCAAC+AGG - chr6.3:3360479-3360498 None:intergenic 30.0%
!! AATTTTGGCAGCAATGAAAT+AGG - chr6.3:3361455-3361474 None:intergenic 30.0%
!! ATATCTGTTTTGTTCTACCA+TGG + chr6.3:3362078-3362097 MS.gene026929:intron 30.0%
!! ATCTTCTCTTTTGTTTGGAT+AGG + chr6.3:3362205-3362224 MS.gene026929:intron 30.0%
!! ATTTTGGCAGCAATGAAATA+GGG - chr6.3:3361454-3361473 None:intergenic 30.0%
!! CCGTTTGTCTATTTTTCATA+AGG + chr6.3:3360938-3360957 MS.gene026929:CDS 30.0%
!! TCTTCTCTTTTGTTTGGATA+GGG + chr6.3:3362206-3362225 MS.gene026929:intron 30.0%
AAATGTTGATGCTTGTGTCA+AGG + chr6.3:3360646-3360665 MS.gene026929:CDS 35.0%
AATAGATTCTTTGGATCCTC+TGG + chr6.3:3361228-3361247 MS.gene026929:CDS 35.0%
AATGTCAGCAGATGTCATAA+TGG - chr6.3:3361185-3361204 None:intergenic 35.0%
CATCACAGAAAATCATTTCG+TGG - chr6.3:3361643-3361662 None:intergenic 35.0%
CCTGATTTCCATTAACATGT+GGG - chr6.3:3360547-3360566 None:intergenic 35.0%
CTGATTTCCATTAACATGTG+GGG - chr6.3:3360546-3360565 None:intergenic 35.0%
GAAGAAAAACTGTTCCTCTT+TGG + chr6.3:3360517-3360536 MS.gene026929:CDS 35.0%
GAATTTAATGAAACACCCCA+AGG - chr6.3:3360755-3360774 None:intergenic 35.0%
GATAACCATTGAAATTGGTG+TGG + chr6.3:3360722-3360741 MS.gene026929:intron 35.0%
GTAATCTCAGAATACACTTG+TGG + chr6.3:3361302-3361321 MS.gene026929:intron 35.0%
TATATCTGTTCTGTTCAGCT+AGG + chr6.3:3362129-3362148 MS.gene026929:intron 35.0%
TATGCTATATGGTAAACAGG+GGG + chr6.3:3361098-3361117 MS.gene026929:intron 35.0%
TCTTTGCCTGCATCATTAAT+TGG - chr6.3:3361702-3361721 None:intergenic 35.0%
TTGAACCACACCAATTTCAA+TGG - chr6.3:3360730-3360749 None:intergenic 35.0%
! AGCGACGAAACCAAAATTTT+AGG + chr6.3:3361673-3361692 MS.gene026929:intron 35.0%
! ATGACATCTGCTGACATTTT+CGG + chr6.3:3361187-3361206 MS.gene026929:CDS 35.0%
! CACGAAATGATTTTCTGTGA+TGG + chr6.3:3361641-3361660 MS.gene026929:intron 35.0%
! TGTTTATTGGGAGCATGTAT+TGG + chr6.3:3362003-3362022 MS.gene026929:intron 35.0%
! TTTTGGCAGCAATGAAATAG+GGG - chr6.3:3361453-3361472 None:intergenic 35.0%
!!! ATCCATCTTTTTTGGGTAGA+GGG + chr6.3:3360678-3360697 MS.gene026929:intron 35.0%
!!! TATCCATCTTTTTTGGGTAG+AGG + chr6.3:3360677-3360696 MS.gene026929:intron 35.0%
AGGAAGCCAATTAATGATGC+AGG + chr6.3:3361693-3361712 MS.gene026929:intron 40.0%
AGTACAGCTTGAGCACTTAA+AGG - chr6.3:3362563-3362582 None:intergenic 40.0%
ATCTCTACAACAGAATCAGC+AGG - chr6.3:3360575-3360594 None:intergenic 40.0%
ATGCTATATGGTAAACAGGG+GGG + chr6.3:3361099-3361118 MS.gene026929:intron 40.0%
ATTGGTGTGGTTCAATACCT+TGG + chr6.3:3360735-3360754 MS.gene026929:intron 40.0%
CCCACATGTTAATGGAAATC+AGG + chr6.3:3360544-3360563 MS.gene026929:CDS 40.0%
CTTGAGCACTTAAAGGAGAA+AGG - chr6.3:3362556-3362575 None:intergenic 40.0%
GAGGAATTCTAACTTACCAG+AGG - chr6.3:3361247-3361266 None:intergenic 40.0%
GCCTGATTTCCATTAACATG+TGG - chr6.3:3360548-3360567 None:intergenic 40.0%
GGAGCATGTATTGGATTTCT+AGG + chr6.3:3362012-3362031 MS.gene026929:intron 40.0%
TCATTAGCATTGTCAACAGG+AGG - chr6.3:3360476-3360495 None:intergenic 40.0%
TTGGTGTGGTTCAATACCTT+GGG + chr6.3:3360736-3360755 MS.gene026929:intron 40.0%
TTGGTTTCCCCACATGTTAA+TGG + chr6.3:3360536-3360555 MS.gene026929:CDS 40.0%
TTGTTTGGATAGGGTGCAAA+AGG + chr6.3:3362215-3362234 MS.gene026929:intron 40.0%
! AATACTAGCAGAGCATTCCA+TGG - chr6.3:3362098-3362117 None:intergenic 40.0%
! GCTGATTCTGTTGTAGAGAT+TGG + chr6.3:3360575-3360594 MS.gene026929:CDS 40.0%
! TGGACTAGACTCAAAGGATT+GGG + chr6.3:3360884-3360903 MS.gene026929:CDS 40.0%
!! AAAGGTACTCATACCAGTTG+TGG - chr6.3:3361548-3361567 None:intergenic 40.0%
!! GTTTTGATAACAGCACTCCT+AGG - chr6.3:3361160-3361179 None:intergenic 40.0%
!!! GTTTTGAAGCTCCAGAAGTA+GGG - chr6.3:3362330-3362349 None:intergenic 40.0%
AAAGACCGAGACAGTATCAG+AGG + chr6.3:3362403-3362422 MS.gene026929:CDS 45.0%
AAAGACCGTGACAGTATCAG+AGG + chr6.3:3362457-3362476 MS.gene026929:CDS 45.0%
AACATGTGGGGAAACCAAAG+AGG - chr6.3:3360534-3360553 None:intergenic 45.0%
AGAGATCGCGACAGAATCTT+GGG + chr6.3:3362511-3362530 MS.gene026929:CDS 45.0%
ATGATGCAGGCAAAGAACCT+TGG + chr6.3:3361706-3361725 MS.gene026929:intron 45.0%
ATTCAGTCGCAAACATAGGC+TGG - chr6.3:3362172-3362191 None:intergenic 45.0%
CCACATTCAGTCGCAAACAT+AGG - chr6.3:3362176-3362195 None:intergenic 45.0%
CCTATGTTTGCGACTGAATG+TGG + chr6.3:3362173-3362192 MS.gene026929:intron 45.0%
CTTTGGATCCTCAGATACAG+TGG - chr6.3:3362387-3362406 None:intergenic 45.0%
GCAACTGAAAGGAAGAGTGA+GGG + chr6.3:3360425-3360444 MS.gene026929:CDS 45.0%
GCTTCTTCTCAAGTCTTCAC+AGG + chr6.3:3361367-3361386 MS.gene026929:CDS 45.0%
GGACAAACGCTTTGTATGTG+AGG + chr6.3:3361388-3361407 MS.gene026929:CDS 45.0%
GTCCCTCTACCCAAAAAAGA+TGG - chr6.3:3360683-3360702 None:intergenic 45.0%
TACAACAGAATCAGCAGGCA+CGG - chr6.3:3360570-3360589 None:intergenic 45.0%
TCACTCTTCCTTTCAGTTGC+AGG - chr6.3:3360425-3360444 None:intergenic 45.0%
TCTGATACTGTCTCGGTCTT+TGG - chr6.3:3362404-3362423 None:intergenic 45.0%
TCTGTTCTGTTCAGCTAGGA+AGG + chr6.3:3362133-3362152 MS.gene026929:intron 45.0%
TGAGTCTAGTCCAGCTAAGA+GGG - chr6.3:3360877-3360896 None:intergenic 45.0%
TGCAACTGAAAGGAAGAGTG+AGG + chr6.3:3360424-3360443 MS.gene026929:CDS 45.0%
TGCATCCTCTGATACTGTCT+CGG - chr6.3:3362438-3362457 None:intergenic 45.0%
TGGATCCTCTGATACTGTCA+CGG - chr6.3:3362465-3362484 None:intergenic 45.0%
TGGATCCTCTGATACTGTCT+CGG - chr6.3:3362411-3362430 None:intergenic 45.0%
TGGTGTGGTTCAATACCTTG+GGG + chr6.3:3360737-3360756 MS.gene026929:intron 45.0%
TGGTTCCTCAGATACTGTCA+CGG - chr6.3:3362492-3362511 None:intergenic 45.0%
TGTGATCACACGTATTGCCA+AGG + chr6.3:3361123-3361142 MS.gene026929:CDS 45.0%
TGTTAACAGACCCTCTTAGC+TGG + chr6.3:3360864-3360883 MS.gene026929:intron 45.0%
TTCATCATCAGTGGTGACCA+AGG - chr6.3:3361726-3361745 None:intergenic 45.0%
TTGAGTCTAGTCCAGCTAAG+AGG - chr6.3:3360878-3360897 None:intergenic 45.0%
TTGATGCCTTTGCACGAACA+CGG - chr6.3:3361505-3361524 None:intergenic 45.0%
TTTGGGTAGAGGGACTAGAT+GGG + chr6.3:3360688-3360707 MS.gene026929:intron 45.0%
! AGCACTCCTAGGACTTTTCA+GGG - chr6.3:3361149-3361168 None:intergenic 45.0%
! CTGGACTAGACTCAAAGGAT+TGG + chr6.3:3360883-3360902 MS.gene026929:CDS 45.0%
! CTTAGCTGGACTAGACTCAA+AGG + chr6.3:3360878-3360897 MS.gene026929:CDS 45.0%
! TTCTCGAAGTGTTCCACAAC+TGG + chr6.3:3361532-3361551 MS.gene026929:CDS 45.0%
!! TTTTGGGTAGAGGGACTAGA+TGG + chr6.3:3360687-3360706 MS.gene026929:intron 45.0%
!!! CGTTTTGAAGCTCCAGAAGT+AGG - chr6.3:3362331-3362350 None:intergenic 45.0%
!!! AAAATATTAATTTGTTTATT+GGG + chr6.3:3361991-3362010 MS.gene026929:intron 5.0%
AGACTCAAAGGATTGGGTCC+TGG + chr6.3:3360890-3360909 MS.gene026929:CDS 50.0%
AGAGACCGTGACAGTATCTG+AGG + chr6.3:3362484-3362503 MS.gene026929:CDS 50.0%
AGCATTGTCAACAGGAGGCT+TGG - chr6.3:3360471-3360490 None:intergenic 50.0%
AGGAAGCTGGTCGCTCAATT+GGG - chr6.3:3362285-3362304 None:intergenic 50.0%
CAAGATTCTGTCGCGATCTC+TGG - chr6.3:3362512-3362531 None:intergenic 50.0%
CAGAGATCGCGACAGAATCT+TGG + chr6.3:3362510-3362529 MS.gene026929:CDS 50.0%
GGGTGCTTGTGCTTAAGGTA+TGG - chr6.3:3361482-3361501 None:intergenic 50.0%
TCAGATACTGTCACGGTCTC+TGG - chr6.3:3362485-3362504 None:intergenic 50.0%
TGATGCCTTTGCACGAACAC+GGG - chr6.3:3361504-3361523 None:intergenic 50.0%
TTCGTGTGACCAGCATTGCA+CGG + chr6.3:3362582-3362601 MS.gene026929:CDS 50.0%
! CAGCACTCCTAGGACTTTTC+AGG - chr6.3:3361150-3361169 None:intergenic 50.0%
AGCAGCTCGAACCCTACTTC+TGG + chr6.3:3362316-3362335 MS.gene026929:CDS 55.0%
ATGCCTTTGCACGAACACGG+GGG - chr6.3:3361502-3361521 None:intergenic 55.0%
CAGGAAGCTGGTCGCTCAAT+TGG - chr6.3:3362286-3362305 None:intergenic 55.0%
CCAAGGCCCTGAAAAGTCCT+AGG + chr6.3:3361140-3361159 MS.gene026929:CDS 55.0%
CTTCTCTGGACTCAGGAAGC+TGG - chr6.3:3362298-3362317 None:intergenic 55.0%
GAAAGGAAGAGTGAGGGCTC+TGG + chr6.3:3360431-3360450 MS.gene026929:CDS 55.0%
GATGCCTTTGCACGAACACG+GGG - chr6.3:3361503-3361522 None:intergenic 55.0%
TAGGGTTCGAGCTGCTTCTC+TGG - chr6.3:3362312-3362331 None:intergenic 55.0%
TCCTCAGATACAGTGGCTGC+TGG - chr6.3:3362380-3362399 None:intergenic 55.0%
TCGTGTGACCAGCATTGCAC+GGG + chr6.3:3362583-3362602 MS.gene026929:CDS 55.0%
! GAAGAGTGAGGGCTCTGGTA+AGG + chr6.3:3360436-3360455 MS.gene026929:CDS 55.0%
!! CCTAGGACTTTTCAGGGCCT+TGG - chr6.3:3361143-3361162 None:intergenic 55.0%
AAGACCCTCCCGTGCAATGC+TGG - chr6.3:3362594-3362613 None:intergenic 60.0%
AGTGGCTGCTGGCACGAGAT+TGG - chr6.3:3362369-3362388 None:intergenic 60.0%
CGAGCTGCTTCTCTGGACTC+AGG - chr6.3:3362305-3362324 None:intergenic 60.0%
GCCAGCAGCCACTGTATCTG+AGG + chr6.3:3362376-3362395 MS.gene026929:CDS 60.0%
GTGACCAGCATTGCACGGGA+GGG + chr6.3:3362587-3362606 MS.gene026929:CDS 60.0%
GTGGCTGCTGGCACGAGATT+GGG - chr6.3:3362368-3362387 None:intergenic 60.0%
TGTGACCAGCATTGCACGGG+AGG + chr6.3:3362586-3362605 MS.gene026929:CDS 60.0%
!! CACGGGGGTGCTTGTGCTTA+AGG - chr6.3:3361487-3361506 None:intergenic 60.0%
GCACCCCCGTGTTCGTGCAA+AGG + chr6.3:3361496-3361515 MS.gene026929:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 3360386 3362622 3360386 ID=MS.gene026929
chr6.3 mRNA 3360386 3362622 3360386 ID=MS.gene026929.t1;Parent=MS.gene026929
chr6.3 exon 3360386 3360667 3360386 ID=MS.gene026929.t1.exon1;Parent=MS.gene026929.t1
chr6.3 CDS 3360386 3360667 3360386 ID=cds.MS.gene026929.t1;Parent=MS.gene026929.t1
chr6.3 exon 3360873 3360979 3360873 ID=MS.gene026929.t1.exon2;Parent=MS.gene026929.t1
chr6.3 CDS 3360873 3360979 3360873 ID=cds.MS.gene026929.t1;Parent=MS.gene026929.t1
chr6.3 exon 3361117 3361249 3361117 ID=MS.gene026929.t1.exon3;Parent=MS.gene026929.t1
chr6.3 CDS 3361117 3361249 3361117 ID=cds.MS.gene026929.t1;Parent=MS.gene026929.t1
chr6.3 exon 3361359 3361553 3361359 ID=MS.gene026929.t1.exon4;Parent=MS.gene026929.t1
chr6.3 CDS 3361359 3361553 3361359 ID=cds.MS.gene026929.t1;Parent=MS.gene026929.t1
chr6.3 exon 3362227 3362622 3362227 ID=MS.gene026929.t1.exon5;Parent=MS.gene026929.t1
chr6.3 CDS 3362227 3362622 3362227 ID=cds.MS.gene026929.t1;Parent=MS.gene026929.t1
Gene Sequence

>MS.gene026929

ATGTCGGAGACAGCACTGAAGGATCTCAATAATATTCCTGCAACTGAAAGGAAGAGTGAGGGCTCTGGTAAGGCGTGTTTGACCAAGCCTCCTGTTGACAATGCTAATGAAAATACTGAAGAAAGTCAAAAGAAGAAAAACTGTTCCTCTTTGGTTTCCCCACATGTTAATGGAAATCAGGCCGTGCCTGCTGATTCTGTTGTAGAGATTGGAACTGTAGAAGTAGAATACATTGATTCTGAGAACTTAAATGATCTAGAAAATGTTGATGCTTGTGTCAAGGTATTATTTTATCCATCTTTTTTGGGTAGAGGGACTAGATGGGTTTGAAAAGTTGATAACCATTGAAATTGGTGTGGTTCAATACCTTGGGGTGTTTCATTAAATTCTTTTTCGATATTTACCTTTGATTATTAGCTTTATATAATATTCCTTCAATACCTATTTTATGTCAGTATCGTTATTAGTTATTTTTTTTTGTTAACAGACCCTCTTAGCTGGACTAGACTCAAAGGATTGGGTCCTGGTTTGTGATACTCTAAATAATGTACGCCGTTTGTCTATTTTTCATAAGGAAGCAATGCTTGATATTCTGTAAGTATTGAACTTTTTTCTTCAATGTTTTCTGATTGAAAGATGGTTTTTAAATTAAAATACCATTGCTTAATATGCAATGGTTTTTGTTTGGTTTTATAAGTTATTAAATTATTCATATGCTATATGGTAAACAGGGGGGATGTGATCACACGTATTGCCAAGGCCCTGAAAAGTCCTAGGAGTGCTGTTATCAAAACTGCCATTATGACATCTGCTGACATTTTCGGTGCATATAATGATCTTATAATAGATTCTTTGGATCCTCTGGTAAGTTAGAATTCCTCCTTTGTACTATTAAATTTGCAATCTTAAGCATTATGTAATCTCAGAATACACTTGTGGTAGTAAATTGACATGTTCTTAATGGTGGATGCAGCTACTACAGCTTCTTCTCAAGTCTTCACAGGACAAACGCTTTGTATGTGAGGCAGCAGAAAAAGCCTTGATATCAATGACTACTTGTATTTCCCCTATTTCATTGCTGCCAAAATTGCAACCATACCTTAAGCACAAGCACCCCCGTGTTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACAACTGGTATGAGTACCTTTATGACTTTTGCTCTTCTTGATGACTCTTCATATTGATGTCTTTTAGTTTTAATTTATTTCTAGAGTTGTTTCCCACGAAATGATTTTCTGTGATGGAAAAAGAAAAGCGACGAAACCAAAATTTTAGGAAGCCAATTAATGATGCAGGCAAAGAACCTTGGTCACCACTGATGATGAAATTCCATAATTTTTTATGTTTGTTTTGGACATCTGACTGAATTTGAAAAAAGTTGTTTCAGACCCAAATTATTTAAGAAAGCTTCTCATGTCTATGTTAAATTTGTGAATGGTTTATCATGATCATGCATGTAATTCTGTTGTTGATAATTGATATATTGCCTAACATAGCAAAATCAAATAGAAGGACACTTAGTTGTGTGATCAAATAGCAATGATTTTAATTGATACATGGCATATGCCCTGAAAATATTAATTTGTTTATTGGGAGCATGTATTGGATTTCTAGGTTAATGATTATATGTTTAACCTGCTAGTATTAATATTGGTCTTATATCTGTTTTGTTCTACCATGGAATGCTCTGCTAGTATTAATATTGGTCTTATATCTGTTCTGTTCAGCTAGGAAGGTTAATAAATATGGCCAGCCTATGTTTGCGACTGAATGTGGATCATTAACATCTTCTCTTTTGTTTGGATAGGGTGCAAAAGGCATAAATACATATGGCATTGACAAATTGATTCAAGTAGCTGCATCCCAATTGAGCGACCAGCTTCCTGAGTCCAGAGAAGCAGCTCGAACCCTACTTCTGGAGCTTCAAAACGTGTACGAGAAATTTCCCAATCTCGTGCCAGCAGCCACTGTATCTGAGGATCCAAAGACCGAGACAGTATCAGAGGATCCAAAGACCGAGACAGTATCAGAGGATGCAAAGACCGTGACAGTATCAGAGGATCCAGAGACCGTGACAGTATCTGAGGAACCAGAGATCGCGACAGAATCTTGGGAAAGCTTCTGTCAGTCAAACCTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTGACCAGCATTGCACGGGAGGGTCTTGTTTCATGA
Protein sequence

>MS.gene026929.t1

MSETALKDLNNIPATERKSEGSGKACLTKPPVDNANENTEESQKKKNCSSLVSPHVNGNQAVPADSVVEIGTVEVEYIDSENLNDLENVDACVKTLLAGLDSKDWVLVCDTLNNVRRLSIFHKEAMLDILGDVITRIAKALKSPRSAVIKTAIMTSADIFGAYNDLIIDSLDPLLLQLLLKSSQDKRFVCEAAEKALISMTTCISPISLLPKLQPYLKHKHPRVRAKASMCFSRSVPQLGAKGINTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKFPNLVPAATVSEDPKTETVSEDPKTETVSEDAKTVTVSEDPETVTVSEEPEIATESWESFCQSNLSPLSAQAVLRVTSIAREGLVS